Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386770 | XP_003603940.1 | 98.315 | 178 | 3 | 0 | 1 | 178 | 1 | 178 | 4.50e-126 | 362 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386770 | B7FMY9 | 98.315 | 178 | 3 | 0 | 1 | 178 | 1 | 178 | 2.15e-126 | 362 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0072420 | Msa0386770 | 0.810110 | 1.356275e-50 | -8.615850e-47 |
| Msa0204960 | Msa0386770 | 0.808751 | 2.654621e-50 | -8.615850e-47 |
| Msa0385500 | Msa0386770 | 0.813044 | 3.123126e-51 | -8.615850e-47 |
| Msa0386770 | Msa0542560 | 0.820810 | 5.633399e-53 | -8.615850e-47 |
| Msa0386770 | Msa0604290 | 0.815366 | 9.590940e-52 | -8.615850e-47 |
| Msa0386770 | Msa0689320 | 0.802321 | 5.929329e-49 | -8.615850e-47 |
| Msa0386770 | Msa0828590 | 0.802134 | 6.480770e-49 | -8.615850e-47 |
| Msa0386770 | Msa0933380 | 0.805199 | 1.497694e-49 | -8.615850e-47 |
| Msa0386770 | Msa1192140 | -0.800371 | 1.487184e-48 | -8.615850e-47 |
| Msa0386770 | Msa1365800 | 0.812146 | 4.910984e-51 | -8.615850e-47 |
| Msa0386770 | Msa1368530 | 0.817670 | 2.924292e-52 | -8.615850e-47 |
| Msa0386770 | Msa1458290 | 0.800232 | 1.587426e-48 | -8.615850e-47 |
| Msa0281530 | Msa0386770 | 0.813201 | 2.886201e-51 | -8.615850e-47 |
| Msa0320590 | Msa0386770 | 0.802358 | 5.825781e-49 | -8.615850e-47 |
| Msa0343500 | Msa0386770 | 0.813161 | 2.944649e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386770 | MtrunA17_Chr3g0144691 | 98.315 | 178 | 3 | 0 | 1 | 178 | 1 | 178 | 4.14e-130 | 362 |
| Msa0386770 | MtrunA17_Chr1g0176311 | 27.011 | 174 | 93 | 5 | 32 | 171 | 12 | 185 | 3.69e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386770 | AT2G21620.1 | 77.528 | 178 | 39 | 1 | 1 | 178 | 1 | 177 | 1.89e-93 | 270 |
| Msa0386770 | AT2G21620.2 | 75.000 | 184 | 39 | 2 | 1 | 178 | 1 | 183 | 8.24e-91 | 263 |
Find 52 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCTTGTTCATGCTGTTTC+TGG | 0.024473 | 3_1:+90532308 | Msa0386770:CDS |
| TGAATTTCCAAACATGAAAA+TGG | 0.184323 | 3_1:-90533760 | None:intergenic |
| TAAACCTGCAGCTGTGGTTT+TGG | 0.252116 | 3_1:+90533309 | Msa0386770:CDS |
| ATCAATCGTCTAATGGATTT+AGG | 0.267905 | 3_1:+90533662 | Msa0386770:exon |
| TTCTTGAATGTAACATTGTT+TGG | 0.326541 | 3_1:+90533826 | Msa0386770:three_prime_UTR |
| AAGTGAAGATTGTAAATTAA+TGG | 0.331046 | 3_1:+90532076 | Msa0386770:exon |
| GCACCTGTTGTGATCGTTCC+TGG | 0.338638 | 3_1:+90533530 | Msa0386770:CDS |
| TCAAAAGCATGTTTACTGTT+TGG | 0.339328 | 3_1:-90532245 | None:intergenic |
| GAGAAACAACACAGAGCAAT+AGG | 0.361464 | 3_1:-90533960 | None:intergenic |
| CCAGAGCTTGAGAGGGAAAC+AGG | 0.363491 | 3_1:+90532176 | Msa0386770:CDS |
| AGCTCTGGCTCAGGCACTAT+TGG | 0.369995 | 3_1:-90532161 | None:intergenic |
| ACTGTTTGGACCATGATCTA+TGG | 0.408420 | 3_1:-90532231 | None:intergenic |
| TTGAAACAAGCTTCTGCCTC+TGG | 0.408871 | 3_1:-90533335 | None:intergenic |
| CCTGTTTCCCTCTCAAGCTC+TGG | 0.412478 | 3_1:-90532176 | None:intergenic |
| GTGATGCATCAATCGTCTAA+TGG | 0.415705 | 3_1:+90533655 | Msa0386770:CDS |
| ACAATCTTCACTTCACAACT+TGG | 0.437242 | 3_1:-90532066 | None:intergenic |
| TGCATTGTTTACAAAACAAA+AGG | 0.438743 | 3_1:-90533892 | None:intergenic |
| TCCCTCTCAAGCTCTGGCTC+AGG | 0.455326 | 3_1:-90532170 | None:intergenic |
| GAGTCAAGTCATACACAGTT+TGG | 0.473887 | 3_1:-90532463 | None:intergenic |
| TTTCCAGGAACGATCACAAC+AGG | 0.474556 | 3_1:-90533533 | None:intergenic |
| CAGGAGAAAGAAGAAGAGGA+AGG | 0.480520 | 3_1:+90532195 | Msa0386770:CDS |
| GAATTTCCAAACATGAAAAT+GGG | 0.481633 | 3_1:-90533759 | None:intergenic |
| GAGGCAGAAGCTTGTTTCAA+AGG | 0.482260 | 3_1:+90533338 | Msa0386770:CDS |
| GAAACAGGAGAAAGAAGAAG+AGG | 0.483483 | 3_1:+90532191 | Msa0386770:CDS |
| CGGATAGTGCAAGGTGATGC+AGG | 0.488351 | 3_1:+90533256 | Msa0386770:CDS |
| GTCCCCAAAACCACAGCTGC+AGG | 0.501479 | 3_1:-90533313 | None:intergenic |
| GTATCTAACTTCATATGTTG+TGG | 0.504777 | 3_1:+90533725 | Msa0386770:three_prime_UTR |
| TGACTTGACTCAGGGGCTGA+TGG | 0.515307 | 3_1:+90532475 | Msa0386770:CDS |
| GTTGTGATCGTTCCTGGAAA+AGG | 0.523884 | 3_1:+90533536 | Msa0386770:CDS |
| TCCTTCTTCAGTGTGCTACA+AGG | 0.530640 | 3_1:+90533470 | Msa0386770:intron |
| AGGAGAAAGAAGAAGAGGAA+GGG | 0.532412 | 3_1:+90532196 | Msa0386770:CDS |
| TAAATTAATGGAGACAGTGA+TGG | 0.533156 | 3_1:+90532088 | Msa0386770:exon |
| TGCCTGAGCCAGAGCTTGAG+AGG | 0.541192 | 3_1:+90532168 | Msa0386770:CDS |
| AACTGTGTATGACTTGACTC+AGG | 0.550941 | 3_1:+90532466 | Msa0386770:CDS |
| GATGGAGAAATTAGCGGTTG+AGG | 0.552604 | 3_1:+90532493 | Msa0386770:CDS |
| ATAGTATTAGCCATAGATCA+TGG | 0.553466 | 3_1:+90532221 | Msa0386770:CDS |
| AACAGGTGAAAACAGTAGCT+CGG | 0.557174 | 3_1:+90533236 | Msa0386770:intron |
| GGCACTATTGGTATCAGAGA+AGG | 0.564937 | 3_1:-90532149 | None:intergenic |
| GAGGATTAAACCTGCAGCTG+TGG | 0.569878 | 3_1:+90533303 | Msa0386770:CDS |
| GGGGCTGATGGAGAAATTAG+CGG | 0.584454 | 3_1:+90532487 | Msa0386770:CDS |
| TTTCTGATTATCTCTCTACT+CGG | 0.590148 | 3_1:-90532022 | None:intergenic |
| AACCAGAAACAGCATGAACA+AGG | 0.607545 | 3_1:-90532310 | None:intergenic |
| GCCTGAGCCAGAGCTTGAGA+GGG | 0.610344 | 3_1:+90532169 | Msa0386770:CDS |
| ACTGTGTATGACTTGACTCA+GGG | 0.611762 | 3_1:+90532467 | Msa0386770:CDS |
| TGCAGGAAAAGTAATTTGCA+AGG | 0.617105 | 3_1:+90533273 | Msa0386770:CDS |
| AACAGCATGAACAAGGTGGA+TGG | 0.627059 | 3_1:-90532303 | None:intergenic |
| ACAGTAGCTCGGATAGTGCA+AGG | 0.631985 | 3_1:+90533247 | Msa0386770:CDS |
| CAGAAACAGCATGAACAAGG+TGG | 0.686182 | 3_1:-90532307 | None:intergenic |
| CAACAGGTGCTGCTTTACAG+TGG | 0.687014 | 3_1:-90533517 | None:intergenic |
| AGTGTGCTACAAGGAAGCGT+CGG | 0.687872 | 3_1:+90533479 | Msa0386770:intron |
| TAATTTGCAAGGAAGCAGAG+AGG | 0.695628 | 3_1:+90533284 | Msa0386770:CDS |
| CTGTGTATGACTTGACTCAG+GGG | 0.769088 | 3_1:+90532468 | Msa0386770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTAAAAGTTTTCTTTT+CGG | - | chr3_1:90531786-90531805 | None:intergenic | 10.0% |
| !!! | GAAAACTTTTAATTAAAAAA+AGG | + | chr3_1:90531790-90531809 | Msa0386770:intron | 10.0% |
| !! | CAAAAAAATAAAAATAAACA+TGG | + | chr3_1:90532629-90532648 | Msa0386770:intron | 10.0% |
| !! | GTAAAAAAAAAAAAAAACAA+TGG | + | chr3_1:90532721-90532740 | Msa0386770:intron | 10.0% |
| !!! | TTATTGTGAATTTATTTTTT+TGG | + | chr3_1:90533120-90533139 | Msa0386770:intron | 10.0% |
| !! | AAAAAACTTCATAAGTAAAT+AGG | - | chr3_1:90532555-90532574 | None:intergenic | 15.0% |
| !! | TTCAATTTGACAAATTATAT+AGG | + | chr3_1:90532581-90532600 | Msa0386770:intron | 15.0% |
| !!! | TATTACAAGTTGATTTTATA+CGG | - | chr3_1:90532956-90532975 | None:intergenic | 15.0% |
| !!! | AAAACTTATTCTTTTTCAAT+GGG | + | chr3_1:90533007-90533026 | Msa0386770:intron | 15.0% |
| !! | AAAAAACATATACAGAATAA+TGG | - | chr3_1:90533449-90533468 | None:intergenic | 15.0% |
| !! | TGATAAAAAGAAAAGTAATT+AGG | - | chr3_1:90533575-90533594 | None:intergenic | 15.0% |
| !! | GAAATATACATATCAAAAGA+CGG | - | chr3_1:90531915-90531934 | None:intergenic | 20.0% |
| !!! | GTGCTGTTATTATTTTTTTA+AGG | - | chr3_1:90531986-90532005 | None:intergenic | 20.0% |
| !! | AAGTGAAGATTGTAAATTAA+TGG | + | chr3_1:90532076-90532095 | Msa0386770:exon | 20.0% |
| !! | TATAAAGTGATTGAAATTTG+TGG | + | chr3_1:90532387-90532406 | Msa0386770:intron | 20.0% |
| !! | TTCATAAGTAAATAGGAAAA+CGG | - | chr3_1:90532548-90532567 | None:intergenic | 20.0% |
| !! | TAAAATCAACTTGTAATACA+AGG | + | chr3_1:90532958-90532977 | Msa0386770:intron | 20.0% |
| !!! | CAAAACTTATTCTTTTTCAA+TGG | + | chr3_1:90533006-90533025 | Msa0386770:intron | 20.0% |
| !! | TTAAAAGTTTTCTTTTCGGT+TGG | - | chr3_1:90531782-90531801 | None:intergenic | 25.0% |
| ! | AATGCAAAATTGCTCTATTT+AGG | - | chr3_1:90531854-90531873 | None:intergenic | 25.0% |
| !!! | GATTGAAATTTGTGGTTTTA+TGG | + | chr3_1:90532395-90532414 | Msa0386770:intron | 25.0% |
| ! | AAAAAAAAAACAATGGCTTG+CGG | + | chr3_1:90532728-90532747 | Msa0386770:intron | 25.0% |
| ! | GCATATCTTGAAATGTTTAA+TGG | + | chr3_1:90532803-90532822 | Msa0386770:intron | 25.0% |
| ! | TATCTTGAAATGTTTAATGG+AGG | + | chr3_1:90532806-90532825 | Msa0386770:intron | 25.0% |
| ! | AAAAGTTAAATCAACCATCA+TGG | + | chr3_1:90532866-90532885 | Msa0386770:intron | 25.0% |
| ! | GGGATTATTAATACATGTAA+AGG | - | chr3_1:90533044-90533063 | None:intergenic | 25.0% |
| ! | TAATGAGTGATATACAATAG+AGG | - | chr3_1:90533150-90533169 | None:intergenic | 25.0% |
| ! | CATACTAATCATAAGTAGAA+TGG | - | chr3_1:90533209-90533228 | None:intergenic | 25.0% |
| ! | GAATTTCCAAACATGAAAAT+GGG | - | chr3_1:90533762-90533781 | None:intergenic | 25.0% |
| ! | TGAATTTCCAAACATGAAAA+TGG | - | chr3_1:90533763-90533782 | None:intergenic | 25.0% |
| ! | TTCTTGAATGTAACATTGTT+TGG | + | chr3_1:90533826-90533845 | Msa0386770:three_prime_UTR | 25.0% |
| ! | TGCATTGTTTACAAAACAAA+AGG | - | chr3_1:90533895-90533914 | None:intergenic | 25.0% |
| TTTCTGATTATCTCTCTACT+CGG | - | chr3_1:90532025-90532044 | None:intergenic | 30.0% | |
| TAAATTAATGGAGACAGTGA+TGG | + | chr3_1:90532088-90532107 | Msa0386770:exon | 30.0% | |
| ATAGTATTAGCCATAGATCA+TGG | + | chr3_1:90532221-90532240 | Msa0386770:CDS | 30.0% | |
| ! | TCAAAAGCATGTTTACTGTT+TGG | - | chr3_1:90532248-90532267 | None:intergenic | 30.0% |
| ! | ACAGTAAACATGCTTTTGAT+TGG | + | chr3_1:90532249-90532268 | Msa0386770:CDS | 30.0% |
| !! | CAGTAAACATGCTTTTGATT+GGG | + | chr3_1:90532250-90532269 | Msa0386770:CDS | 30.0% |
| ATGAGAAGTTAAGAAAGTGA+AGG | - | chr3_1:90532344-90532363 | None:intergenic | 30.0% | |
| TTTACATACTACCTCCTAAA+TGG | - | chr3_1:90532706-90532725 | None:intergenic | 30.0% | |
| TCAATAGCCTAATTAAGTCA+AGG | + | chr3_1:90532780-90532799 | Msa0386770:intron | 30.0% | |
| CAATAGCCTAATTAAGTCAA+GGG | + | chr3_1:90532781-90532800 | Msa0386770:intron | 30.0% | |
| GAGGTCAAAGATACTAATTA+CGG | + | chr3_1:90532825-90532844 | Msa0386770:intron | 30.0% | |
| !! | ATACTAATTACGGTGGATTA+GGG | + | chr3_1:90532835-90532854 | Msa0386770:intron | 30.0% |
| GTTATCAATAAATGCTGCAA+GGG | - | chr3_1:90533064-90533083 | None:intergenic | 30.0% | |
| AGTTATCAATAAATGCTGCA+AGG | - | chr3_1:90533065-90533084 | None:intergenic | 30.0% | |
| ! | GCAGCATTTATTGATAACTT+TGG | + | chr3_1:90533066-90533085 | Msa0386770:intron | 30.0% |
| ACTAATCATAAGTAGAATGG+AGG | - | chr3_1:90533206-90533225 | None:intergenic | 30.0% | |
| GATTAGTATGATGTGAAAAC+AGG | + | chr3_1:90533219-90533238 | Msa0386770:intron | 30.0% | |
| AAGGGATTGAATTGAATGTA+AGG | - | chr3_1:90533390-90533409 | None:intergenic | 30.0% | |
| AAAAGAAAAGTAATTAGGCG+AGG | - | chr3_1:90533570-90533589 | None:intergenic | 30.0% | |
| !! | ATCAATCGTCTAATGGATTT+AGG | + | chr3_1:90533662-90533681 | Msa0386770:exon | 30.0% |
| GTATCTAACTTCATATGTTG+TGG | + | chr3_1:90533725-90533744 | Msa0386770:three_prime_UTR | 30.0% | |
| ! | AAAGTTTTCTTTTCGGTTGG+TGG | - | chr3_1:90531779-90531798 | None:intergenic | 35.0% |
| !! | AATGTTAATTTGTGCCCTCA+AGG | - | chr3_1:90531961-90531980 | None:intergenic | 35.0% |
| ACAATCTTCACTTCACAACT+TGG | - | chr3_1:90532069-90532088 | None:intergenic | 35.0% | |
| !! | TATAGGACTAGTTCTCAACT+CGG | - | chr3_1:90532754-90532773 | None:intergenic | 35.0% |
| TTGAGAACTAGTCCTATAAC+AGG | + | chr3_1:90532756-90532775 | Msa0386770:intron | 35.0% | |
| TAGGCTATTGAACCTGTTAT+AGG | - | chr3_1:90532771-90532790 | None:intergenic | 35.0% | |
| GATATGCCCTTGACTTAATT+AGG | - | chr3_1:90532790-90532809 | None:intergenic | 35.0% | |
| GTCAAAGATACTAATTACGG+TGG | + | chr3_1:90532828-90532847 | Msa0386770:intron | 35.0% | |
| ! | GATACTAATTACGGTGGATT+AGG | + | chr3_1:90532834-90532853 | Msa0386770:intron | 35.0% |
| TAACAACTTGTAAGCCATGA+TGG | - | chr3_1:90532883-90532902 | None:intergenic | 35.0% | |
| !!! | TTCTTTTTCAATGGGAGACT+TGG | + | chr3_1:90533015-90533034 | Msa0386770:intron | 35.0% |
| ! | TGCAGGAAAAGTAATTTGCA+AGG | + | chr3_1:90533273-90533292 | Msa0386770:CDS | 35.0% |
| TTCAATCCCTTTCTATATCC+CGG | + | chr3_1:90533399-90533418 | Msa0386770:intron | 35.0% | |
| ! | TTTCGACCCATTTTCATGTT+TGG | + | chr3_1:90533753-90533772 | Msa0386770:three_prime_UTR | 35.0% |
| !! | TCGTGTTAACTTGTGCCTTT+AGG | + | chr3_1:90531813-90531832 | Msa0386770:intron | 40.0% |
| !! | CGTGTTAACTTGTGCCTTTA+GGG | + | chr3_1:90531814-90531833 | Msa0386770:intron | 40.0% |
| TTGCTTAACATGTGCCCTAA+AGG | - | chr3_1:90531831-90531850 | None:intergenic | 40.0% | |
| TATCTTAACACGTGCCTTGA+GGG | + | chr3_1:90531944-90531963 | Msa0386770:intron | 40.0% | |
| GAAACAGGAGAAAGAAGAAG+AGG | + | chr3_1:90532191-90532210 | Msa0386770:CDS | 40.0% | |
| AGGAGAAAGAAGAAGAGGAA+GGG | + | chr3_1:90532196-90532215 | Msa0386770:CDS | 40.0% | |
| ACTGTTTGGACCATGATCTA+TGG | - | chr3_1:90532234-90532253 | None:intergenic | 40.0% | |
| AACCAGAAACAGCATGAACA+AGG | - | chr3_1:90532313-90532332 | None:intergenic | 40.0% | |
| !! | TTGTTCATGCTGTTTCTGGT+TGG | + | chr3_1:90532312-90532331 | Msa0386770:intron | 40.0% |
| GAGTCAAGTCATACACAGTT+TGG | - | chr3_1:90532466-90532485 | None:intergenic | 40.0% | |
| AACTGTGTATGACTTGACTC+AGG | + | chr3_1:90532466-90532485 | Msa0386770:CDS | 40.0% | |
| ACTGTGTATGACTTGACTCA+GGG | + | chr3_1:90532467-90532486 | Msa0386770:CDS | 40.0% | |
| !!! | TGAGGCTTTTGAAGTTGCAA+TGG | + | chr3_1:90532511-90532530 | Msa0386770:CDS | 40.0% |
| CACAATTTGTGTCCCATTCA+CGG | + | chr3_1:90532674-90532693 | Msa0386770:intron | 40.0% | |
| AAATGGACAACTCCGTGAAT+GGG | - | chr3_1:90532689-90532708 | None:intergenic | 40.0% | |
| TAAATGGACAACTCCGTGAA+TGG | - | chr3_1:90532690-90532709 | None:intergenic | 40.0% | |
| ATTCACGGAGTTGTCCATTT+AGG | + | chr3_1:90532689-90532708 | Msa0386770:intron | 40.0% | |
| CTCATTACTGCTCTATTTCC+TGG | + | chr3_1:90533163-90533182 | Msa0386770:intron | 40.0% | |
| TGCTCTATTTCCTGGCAAAT+TGG | + | chr3_1:90533171-90533190 | Msa0386770:intron | 40.0% | |
| GAATAGATTGCCAATTTGCC+AGG | - | chr3_1:90533184-90533203 | None:intergenic | 40.0% | |
| AACAGGTGAAAACAGTAGCT+CGG | + | chr3_1:90533236-90533255 | Msa0386770:intron | 40.0% | |
| ! | TAATTTGCAAGGAAGCAGAG+AGG | + | chr3_1:90533284-90533303 | Msa0386770:CDS | 40.0% |
| TAACTGCAGTGTGTAGAGAA+TGG | - | chr3_1:90533425-90533444 | None:intergenic | 40.0% | |
| CTTCTTTGATTGACAGATGC+TGG | + | chr3_1:90533633-90533652 | Msa0386770:intron | 40.0% | |
| GTGATGCATCAATCGTCTAA+TGG | + | chr3_1:90533655-90533674 | Msa0386770:CDS | 40.0% | |
| GAGAAACAACACAGAGCAAT+AGG | - | chr3_1:90533963-90533982 | None:intergenic | 40.0% | |
| !!! | TTTTCTTTTCGGTTGGTGGC+TGG | - | chr3_1:90531775-90531794 | None:intergenic | 45.0% |
| GTATCTTAACACGTGCCTTG+AGG | + | chr3_1:90531943-90531962 | Msa0386770:intron | 45.0% | |
| GGCACTATTGGTATCAGAGA+AGG | - | chr3_1:90532152-90532171 | None:intergenic | 45.0% | |
| CAGGAGAAAGAAGAAGAGGA+AGG | + | chr3_1:90532195-90532214 | Msa0386770:CDS | 45.0% | |
| AACAGCATGAACAAGGTGGA+TGG | - | chr3_1:90532306-90532325 | None:intergenic | 45.0% | |
| CAGAAACAGCATGAACAAGG+TGG | - | chr3_1:90532310-90532329 | None:intergenic | 45.0% | |
| !! | CACCTTGTTCATGCTGTTTC+TGG | + | chr3_1:90532308-90532327 | Msa0386770:CDS | 45.0% |
| !! | TCATGCTGTTTCTGGTTGGT+TGG | + | chr3_1:90532316-90532335 | Msa0386770:intron | 45.0% |
| CTGTGTATGACTTGACTCAG+GGG | + | chr3_1:90532468-90532487 | Msa0386770:CDS | 45.0% | |
| GATGGAGAAATTAGCGGTTG+AGG | + | chr3_1:90532493-90532512 | Msa0386770:CDS | 45.0% | |
| ! | TAAACCTGCAGCTGTGGTTT+TGG | + | chr3_1:90533309-90533328 | Msa0386770:CDS | 45.0% |
| ! | AAACCTGCAGCTGTGGTTTT+GGG | + | chr3_1:90533310-90533329 | Msa0386770:CDS | 45.0% |
| TTGAAACAAGCTTCTGCCTC+TGG | - | chr3_1:90533338-90533357 | None:intergenic | 45.0% | |
| ! | GAGGCAGAAGCTTGTTTCAA+AGG | + | chr3_1:90533338-90533357 | Msa0386770:CDS | 45.0% |
| GAATGGCCGGGATATAGAAA+GGG | - | chr3_1:90533408-90533427 | None:intergenic | 45.0% | |
| AGAATGGCCGGGATATAGAA+AGG | - | chr3_1:90533409-90533428 | None:intergenic | 45.0% | |
| TCCTTCTTCAGTGTGCTACA+AGG | + | chr3_1:90533470-90533489 | Msa0386770:intron | 45.0% | |
| TCCTTGTAGCACACTGAAGA+AGG | - | chr3_1:90533474-90533493 | None:intergenic | 45.0% | |
| TTTCCAGGAACGATCACAAC+AGG | - | chr3_1:90533536-90533555 | None:intergenic | 45.0% | |
| GTTGTGATCGTTCCTGGAAA+AGG | + | chr3_1:90533536-90533555 | Msa0386770:CDS | 45.0% | |
| GGGGCTGATGGAGAAATTAG+CGG | + | chr3_1:90532487-90532506 | Msa0386770:CDS | 50.0% | |
| CACGGAGTTGTCCATTTAGG+AGG | + | chr3_1:90532692-90532711 | Msa0386770:intron | 50.0% | |
| ACAGTAGCTCGGATAGTGCA+AGG | + | chr3_1:90533247-90533266 | Msa0386770:CDS | 50.0% | |
| GAGGATTAAACCTGCAGCTG+TGG | + | chr3_1:90533303-90533322 | Msa0386770:CDS | 50.0% | |
| !! | AACCTGCAGCTGTGGTTTTG+GGG | + | chr3_1:90533311-90533330 | Msa0386770:CDS | 50.0% |
| GTGAGCGTGTGTGTGTGTAT+GGG | + | chr3_1:90533360-90533379 | Msa0386770:intron | 50.0% | |
| TGCAGTGTGTAGAGAATGGC+CGG | - | chr3_1:90533421-90533440 | None:intergenic | 50.0% | |
| ! | AGTGTGCTACAAGGAAGCGT+CGG | + | chr3_1:90533479-90533498 | Msa0386770:intron | 50.0% |
| !! | CAACAGGTGCTGCTTTACAG+TGG | - | chr3_1:90533520-90533539 | None:intergenic | 50.0% |
| ! | GAGGAATGCACACCTTTTCC+AGG | - | chr3_1:90533551-90533570 | None:intergenic | 50.0% |
| ! | AGCTCTGGCTCAGGCACTAT+TGG | - | chr3_1:90532164-90532183 | None:intergenic | 55.0% |
| CCTGTTTCCCTCTCAAGCTC+TGG | - | chr3_1:90532179-90532198 | None:intergenic | 55.0% | |
| CCAGAGCTTGAGAGGGAAAC+AGG | + | chr3_1:90532176-90532195 | Msa0386770:CDS | 55.0% | |
| TGACTTGACTCAGGGGCTGA+TGG | + | chr3_1:90532475-90532494 | Msa0386770:CDS | 55.0% | |
| CGGATAGTGCAAGGTGATGC+AGG | + | chr3_1:90533256-90533275 | Msa0386770:CDS | 55.0% | |
| GGTGAGCGTGTGTGTGTGTA+TGG | + | chr3_1:90533359-90533378 | Msa0386770:intron | 55.0% | |
| GCAGTGTGTAGAGAATGGCC+GGG | - | chr3_1:90533420-90533439 | None:intergenic | 55.0% | |
| GCACCTGTTGTGATCGTTCC+TGG | + | chr3_1:90533530-90533549 | Msa0386770:CDS | 55.0% | |
| TGCCTGAGCCAGAGCTTGAG+AGG | + | chr3_1:90532168-90532187 | Msa0386770:CDS | 60.0% | |
| GCCTGAGCCAGAGCTTGAGA+GGG | + | chr3_1:90532169-90532188 | Msa0386770:CDS | 60.0% | |
| ! | TCCCTCTCAAGCTCTGGCTC+AGG | - | chr3_1:90532173-90532192 | None:intergenic | 60.0% |
| GTCCCCAAAACCACAGCTGC+AGG | - | chr3_1:90533316-90533335 | None:intergenic | 60.0% | |
| !!! | GCTGTGGTTTTGGGGACCAG+AGG | + | chr3_1:90533319-90533338 | Msa0386770:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 90531754 | 90534015 | 90531754 | ID=Msa0386770;Name=Msa0386770 |
| chr3_1 | mRNA | 90531754 | 90534015 | 90531754 | ID=Msa0386770-mRNA-1;Parent=Msa0386770;Name=Msa0386770-mRNA-1;_AED=0.06;_eAED=0.06;_QI=158|1|1|1|0.8|0.66|6|341|178 |
| chr3_1 | exon | 90531754 | 90531807 | 90531754 | ID=Msa0386770-mRNA-1:exon:25021;Parent=Msa0386770-mRNA-1 |
| chr3_1 | exon | 90531991 | 90532329 | 90531991 | ID=Msa0386770-mRNA-1:exon:25022;Parent=Msa0386770-mRNA-1 |
| chr3_1 | exon | 90532453 | 90532532 | 90532453 | ID=Msa0386770-mRNA-1:exon:25023;Parent=Msa0386770-mRNA-1 |
| chr3_1 | exon | 90533241 | 90533359 | 90533241 | ID=Msa0386770-mRNA-1:exon:25024;Parent=Msa0386770-mRNA-1 |
| chr3_1 | exon | 90533481 | 90533557 | 90533481 | ID=Msa0386770-mRNA-1:exon:25025;Parent=Msa0386770-mRNA-1 |
| chr3_1 | exon | 90533649 | 90534015 | 90533649 | ID=Msa0386770-mRNA-1:exon:25026;Parent=Msa0386770-mRNA-1 |
| chr3_1 | five_prime_UTR | 90531754 | 90531807 | 90531754 | ID=Msa0386770-mRNA-1:five_prime_utr;Parent=Msa0386770-mRNA-1 |
| chr3_1 | five_prime_UTR | 90531991 | 90532094 | 90531991 | ID=Msa0386770-mRNA-1:five_prime_utr;Parent=Msa0386770-mRNA-1 |
| chr3_1 | CDS | 90532095 | 90532329 | 90532095 | ID=Msa0386770-mRNA-1:cds;Parent=Msa0386770-mRNA-1 |
| chr3_1 | CDS | 90532453 | 90532532 | 90532453 | ID=Msa0386770-mRNA-1:cds;Parent=Msa0386770-mRNA-1 |
| chr3_1 | CDS | 90533241 | 90533359 | 90533241 | ID=Msa0386770-mRNA-1:cds;Parent=Msa0386770-mRNA-1 |
| chr3_1 | CDS | 90533481 | 90533557 | 90533481 | ID=Msa0386770-mRNA-1:cds;Parent=Msa0386770-mRNA-1 |
| chr3_1 | CDS | 90533649 | 90533674 | 90533649 | ID=Msa0386770-mRNA-1:cds;Parent=Msa0386770-mRNA-1 |
| chr3_1 | three_prime_UTR | 90533675 | 90534015 | 90533675 | ID=Msa0386770-mRNA-1:three_prime_utr;Parent=Msa0386770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
