AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0689320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0689320 MtrunA17_Chr3g0109721 86.000 200 11 2 1 183 1 200 4.49e-121 340
Msa0689320 MtrunA17_Chr5g0433561 80.000 200 23 2 1 183 1 200 1.14e-115 326
Msa0689320 MtrunA17_Chr8g0390561 56.995 193 65 3 8 183 7 198 8.03e-73 218
Msa0689320 MtrunA17_Chr1g0199331 53.892 167 59 3 8 156 29 195 2.75e-57 178
Msa0689320 MtrunA17_Chr4g0055651 37.755 196 94 7 12 183 10 201 5.62e-33 116
Msa0689320 MtrunA17_Chr3g0123971 38.182 165 77 4 12 155 11 171 2.24e-32 115
Msa0689320 MtrunA17_Chr8g0382221 38.182 165 77 4 12 155 11 171 3.62e-32 114
Msa0689320 MtrunA17_Chr4g0040781 33.495 206 99 4 12 183 15 216 8.50e-32 114
Msa0689320 MtrunA17_Chr8g0349711 37.037 162 85 2 12 156 8 169 1.18e-31 113
Msa0689320 MtrunA17_Chr6g0458081 38.125 160 82 2 12 154 8 167 1.92e-31 113
Msa0689320 MtrunA17_Chr2g0315551 33.981 206 98 5 12 183 15 216 4.99e-31 112
Msa0689320 MtrunA17_Chr4g0046261 32.673 202 106 3 12 183 15 216 7.42e-31 111
Msa0689320 MtrunA17_Chr2g0283131 33.010 206 100 4 12 183 15 216 7.75e-31 111
Msa0689320 MtrunA17_Chr5g0400131 35.000 180 92 3 12 170 11 186 8.43e-31 111
Msa0689320 MtrunA17_Chr2g0319951 37.654 162 84 2 12 156 15 176 1.74e-30 110
Msa0689320 MtrunA17_Chr4g0032201 35.829 187 95 4 12 176 14 197 3.01e-30 110
Msa0689320 MtrunA17_Chr2g0276941 40.909 154 72 2 12 147 17 169 3.11e-30 110
Msa0689320 MtrunA17_Chr8g0381841 39.103 156 78 2 12 150 19 174 3.95e-30 110
Msa0689320 MtrunA17_Chr6g0482721 37.500 160 83 1 12 154 14 173 7.42e-30 108
Msa0689320 MtrunA17_Chr4g0055081 35.758 165 81 3 12 155 11 171 9.82e-30 108
Msa0689320 MtrunA17_Chr3g0123821 37.821 156 80 2 12 150 18 173 1.26e-29 108
Msa0689320 MtrunA17_Chr1g0189361 34.615 208 100 4 12 183 16 223 1.48e-29 108
Msa0689320 MtrunA17_Chr3g0112681 34.158 202 103 5 12 183 14 215 2.86e-29 107
Msa0689320 MtrunA17_Chr2g0290891 35.185 162 88 2 12 156 8 169 3.49e-29 107
Msa0689320 MtrunA17_Chr8g0349681 33.668 199 105 3 12 183 386 584 6.99e-29 112
Msa0689320 MtrunA17_Chr8g0349681 37.500 160 83 2 12 154 177 336 1.40e-28 110
Msa0689320 MtrunA17_Chr8g0349681 35.669 157 84 2 12 151 15 171 1.61e-26 105
Msa0689320 MtrunA17_Chr1g0182301 32.161 199 106 5 12 182 17 214 1.03e-28 106
Msa0689320 MtrunA17_Chr1g0212521 33.333 198 105 5 12 182 17 214 2.15e-28 105
Msa0689320 MtrunA17_Chr7g0234201 34.634 205 97 6 12 183 15 215 2.15e-28 105
Msa0689320 MtrunA17_Chr2g0325091 35.000 160 87 1 12 154 13 172 2.27e-28 105
Msa0689320 MtrunA17_Chr1g0182321 32.161 199 106 5 12 182 17 214 2.62e-28 105
Msa0689320 MtrunA17_Chr7g0250531 33.161 193 107 4 12 183 10 201 3.41e-28 104
Msa0689320 MtrunA17_Chr7g0275991 34.969 163 89 2 12 157 22 184 5.41e-28 104
Msa0689320 MtrunA17_Chr4g0030911 32.487 197 107 4 12 182 17 213 5.81e-28 104
Msa0689320 MtrunA17_Chr8g0335471 33.673 196 103 6 12 183 10 202 2.70e-27 102
Msa0689320 MtrunA17_Chr7g0231131 32.020 203 106 4 12 182 17 219 2.83e-27 102
Msa0689320 MtrunA17_Chr8g0351861 37.908 153 78 2 12 147 18 170 4.76e-27 102
Msa0689320 MtrunA17_Chr1g0174281 35.802 162 87 2 12 156 17 178 1.04e-26 101
Msa0689320 MtrunA17_Chr7g0214241 35.000 160 87 2 12 154 17 176 2.28e-26 100
Msa0689320 MtrunA17_Chr7g0263071 34.356 163 89 2 12 156 17 179 3.09e-26 99.8
Msa0689320 MtrunA17_Chr8g0346421 33.520 179 97 3 12 168 28 206 3.20e-26 100
Msa0689320 MtrunA17_Chr8g0383261 33.505 194 105 6 12 181 14 207 1.16e-25 98.2
Msa0689320 MtrunA17_Chr2g0276931 32.164 171 98 3 12 165 11 180 1.33e-23 92.4
Msa0689320 MtrunA17_Chr8g0392931 39.744 156 77 2 12 150 16 171 1.34e-23 92.8
Msa0689320 MtrunA17_Chr8g0384311 31.795 195 108 5 12 182 15 208 1.74e-23 92.4
Msa0689320 MtrunA17_Chr2g0327911 29.082 196 114 6 12 182 17 212 2.78e-23 92.0
Msa0689320 MtrunA17_Chr6g0466301 34.545 165 84 4 12 152 10 174 9.05e-22 87.8
Msa0689320 MtrunA17_Chr6g0465491 34.545 165 84 4 12 152 10 174 9.05e-22 87.8
Msa0689320 MtrunA17_Chr7g0265001 31.034 203 113 5 7 183 13 214 1.06e-21 87.8
Msa0689320 MtrunA17_Chr1g0159481 31.980 197 108 7 12 183 19 214 2.06e-21 87.0
Msa0689320 MtrunA17_Chr1g0201121 35.152 165 83 4 12 152 10 174 2.69e-21 86.7
Msa0689320 MtrunA17_Chr3g0130271 30.612 196 110 6 12 182 14 208 6.00e-21 85.9
Msa0689320 MtrunA17_Chr1g0180291 31.343 201 110 6 8 182 12 210 6.11e-21 85.9
Msa0689320 MtrunA17_Chr4g0034871 33.333 165 86 4 12 152 10 174 1.74e-20 84.3
Msa0689320 MtrunA17_Chr2g0331691 30.270 185 105 4 1 161 1 185 2.98e-19 81.3
Msa0689320 MtrunA17_Chr4g0004661 31.034 174 96 4 12 161 66 239 5.62e-18 79.0
Msa0689320 MtrunA17_Chr2g0331831 47.692 65 33 1 119 183 2 65 4.86e-16 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0689320 AT5G45130.1 67.500 200 48 2 1 183 1 200 1.09e-93 271
Msa0689320 AT4G19640.1 66.000 200 51 1 1 183 1 200 2.98e-93 270
Msa0689320 AT5G45130.2 67.914 187 43 2 14 183 22 208 3.19e-88 258
Msa0689320 AT4G19640.2 67.857 140 28 2 1 123 1 140 6.80e-58 179
Msa0689320 AT4G19640.3 66.197 142 31 2 1 125 1 142 1.25e-57 179
Msa0689320 AT3G54840.1 52.047 171 64 3 8 160 31 201 1.66e-55 174
Msa0689320 AT3G54840.3 51.807 166 62 3 13 160 2 167 1.35e-53 168
Msa0689320 AT3G54840.2 51.266 158 59 3 8 147 31 188 4.42e-49 157
Msa0689320 AT5G45750.1 33.831 201 104 4 12 183 15 215 1.35e-32 116
Msa0689320 AT2G44610.1 36.702 188 94 4 12 178 11 194 1.44e-32 116
Msa0689320 AT1G16920.1 40.741 162 79 2 12 156 15 176 2.19e-32 115
Msa0689320 AT5G10260.1 38.788 165 76 4 12 155 11 171 3.98e-32 115
Msa0689320 AT2G22290.1 34.000 200 100 5 12 183 11 206 5.68e-32 114
Msa0689320 AT4G18800.1 33.668 199 105 4 12 183 15 213 6.16e-32 114
Msa0689320 AT4G17160.1 39.490 157 78 2 12 151 8 164 1.38e-31 113
Msa0689320 AT4G39890.1 37.423 163 82 3 12 155 11 172 2.03e-31 113
Msa0689320 AT4G39990.1 33.495 206 101 6 12 183 19 222 2.83e-31 113
Msa0689320 AT5G60860.1 32.178 202 107 3 12 183 15 216 2.98e-31 113
Msa0689320 AT1G09630.1 39.506 162 81 2 12 156 14 175 1.00e-30 111
Msa0689320 AT1G28550.1 35.802 162 87 1 12 156 15 176 1.02e-30 111
Msa0689320 AT4G18430.1 32.178 202 107 3 12 183 15 216 1.44e-30 111
Msa0689320 AT1G06400.1 34.328 201 103 4 12 183 15 215 1.49e-30 111
Msa0689320 AT3G15060.1 36.420 162 86 1 12 156 15 176 2.03e-30 110
Msa0689320 AT1G07410.1 36.364 187 93 4 12 176 14 196 2.84e-30 110
Msa0689320 AT2G33870.1 36.420 162 86 1 12 156 15 176 4.23e-30 110
Msa0689320 AT4G35860.1 37.500 160 83 2 12 154 8 167 1.04e-29 108
Msa0689320 AT5G47520.1 33.981 206 101 5 12 183 16 220 2.90e-29 108
Msa0689320 AT3G07410.1 34.975 203 101 6 12 183 14 216 9.31e-29 106
Msa0689320 AT1G02130.1 34.694 196 101 6 12 183 10 202 1.17e-28 105
Msa0689320 AT5G65270.1 37.255 153 79 2 12 147 19 171 2.38e-28 105
Msa0689320 AT4G17170.1 34.568 162 89 2 12 156 8 169 2.62e-28 105
Msa0689320 AT2G43130.1 32.500 200 107 4 12 183 14 213 5.17e-28 104
Msa0689320 AT5G64990.1 37.267 161 82 3 12 154 9 168 5.24e-28 104
Msa0689320 AT4G17530.1 32.474 194 107 5 12 183 10 201 7.14e-28 103
Msa0689320 AT5G47200.1 32.292 192 110 3 12 183 10 201 7.29e-28 103
Msa0689320 AT5G59840.1 32.828 198 106 5 12 182 17 214 9.06e-28 103
Msa0689320 AT3G46830.1 33.981 206 99 6 12 183 14 216 1.05e-27 103
Msa0689320 AT3G46830.2 33.981 206 99 6 12 183 14 216 1.05e-27 103
Msa0689320 AT3G12160.1 36.420 162 86 2 12 156 17 178 1.74e-27 103
Msa0689320 AT5G59150.1 37.908 153 78 2 12 147 14 166 1.86e-27 103
Msa0689320 AT3G46060.2 31.818 198 108 5 12 182 17 214 5.68e-27 102
Msa0689320 AT3G46060.3 31.818 198 108 5 12 182 17 214 5.68e-27 102
Msa0689320 AT3G46060.1 31.818 198 108 5 12 182 17 214 5.68e-27 102
Msa0689320 AT1G73640.1 37.500 160 83 2 12 154 15 174 2.74e-26 100
Msa0689320 AT3G11730.1 30.412 194 111 3 12 181 10 203 4.91e-26 99.4
Msa0689320 AT3G53610.2 32.828 198 106 5 12 182 17 214 6.26e-26 99.4
Msa0689320 AT3G53610.3 32.828 198 106 5 12 182 17 214 6.26e-26 99.4
Msa0689320 AT3G53610.1 32.828 198 106 5 12 182 17 214 6.26e-26 99.4
Msa0689320 AT1G18200.1 37.500 160 83 2 12 154 15 174 6.82e-26 99.4
Msa0689320 AT1G05810.1 33.005 203 105 5 12 183 14 216 6.98e-26 99.4
Msa0689320 AT5G47960.1 34.524 168 93 2 12 162 17 184 8.05e-26 99.4
Msa0689320 AT1G05810.2 33.005 203 105 5 12 183 60 262 1.67e-25 99.4
Msa0689320 AT5G03520.1 34.343 198 104 5 12 183 17 214 1.89e-25 98.2
Msa0689320 AT2G31680.1 32.353 204 106 5 12 183 14 217 2.16e-25 97.8
Msa0689320 AT5G64990.2 35.714 168 82 4 12 154 9 175 3.15e-25 97.4
Msa0689320 AT3G09900.1 32.500 200 107 4 12 183 17 216 1.16e-24 95.9
Msa0689320 AT1G22740.1 35.758 165 82 5 12 152 10 174 1.42e-22 90.1
Msa0689320 AT1G01200.1 34.043 188 100 5 12 177 30 215 1.58e-22 90.9
Msa0689320 AT3G16100.1 32.184 174 94 4 12 161 10 183 2.41e-21 87.0
Msa0689320 AT1G52280.1 31.250 176 97 4 12 163 10 185 1.01e-20 85.5
Msa0689320 AT1G43890.3 33.951 162 87 4 12 154 15 175 2.63e-20 84.3
Msa0689320 AT1G43890.1 33.951 162 87 4 12 154 15 175 2.63e-20 84.3
Msa0689320 AT1G43890.2 33.951 162 87 4 12 154 15 175 2.63e-20 84.3
Msa0689320 AT3G18820.1 33.333 165 86 4 12 152 10 174 4.08e-20 84.0
Msa0689320 AT5G03530.2 31.188 202 111 6 8 183 11 210 1.04e-19 82.8
Msa0689320 AT5G03530.1 31.188 202 111 6 8 183 11 210 1.04e-19 82.8
Msa0689320 AT5G39620.1 34.118 170 80 6 12 153 7 172 1.04e-19 82.8
Msa0689320 AT2G21880.1 32.927 164 86 5 12 151 11 174 1.43e-19 82.4
Msa0689320 AT4G09720.1 34.545 165 84 5 12 152 10 174 6.63e-19 80.9
Msa0689320 AT4G35860.2 37.500 120 58 2 52 154 2 121 1.05e-18 79.3
Msa0689320 AT1G49300.2 31.707 164 88 4 12 151 10 173 3.20e-18 79.0
Msa0689320 AT1G49300.1 31.707 164 88 4 12 151 10 173 3.20e-18 79.0
Msa0689320 AT4G09720.4 34.118 170 83 6 12 152 10 179 4.27e-17 75.9
Msa0689320 AT5G03520.2 31.288 163 86 5 47 183 42 204 9.19e-17 75.1
Msa0689320 AT4G09720.3 32.386 176 84 5 12 152 10 185 5.12e-16 73.2
Msa0689320 AT5G59150.2 35.398 113 56 2 52 147 3 115 5.03e-14 67.0
Msa0689320 AT2G21880.4 30.612 147 78 5 29 151 3 149 2.41e-12 62.8
Msa0689320 AT2G21880.3 30.612 147 78 5 29 151 3 149 2.41e-12 62.8
Msa0689320 AT2G21880.2 27.564 156 97 4 12 151 11 166 7.42e-12 61.6
Msa0689320 AT4G09720.6 33.577 137 67 5 40 152 4 140 1.98e-11 60.1
Msa0689320 AT4G09720.5 33.577 137 67 5 40 152 4 140 1.98e-11 60.1
Msa0689320 AT4G09720.2 33.577 137 67 5 40 152 4 140 1.98e-11 60.1

Find 61 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATCCCTTGGATGCATATT+TGG 0.119558 4_4:+56349602 Msa0689320:three_prime_UTR
CAAAACAATACAAATTAAAA+AGG 0.201113 4_4:-56349478 None:intergenic
TCAGGTTCTTCTTGGTGATA+TGG 0.214614 4_4:+56344961 Msa0689320:intron
GGGTCAATTTCTCGAATTTC+AGG 0.243303 4_4:+56345021 Msa0689320:CDS
AAGATTTAAGCTTTGAAGTT+AGG 0.257925 4_4:-56344769 None:intergenic
CAACAATCTCAATGCTAAAT+TGG 0.259093 4_4:+56344865 Msa0689320:CDS
CAACGGTTAAATTTGAGATT+TGG 0.280373 4_4:+56346359 Msa0689320:CDS
GCAAGAGCCATGACCATGTT+TGG 0.310928 4_4:-56347841 None:intergenic
AACGGTTAAATTTGAGATTT+GGG 0.317804 4_4:+56346360 Msa0689320:CDS
CTTGGGTTATCACTGTTATA+TGG 0.319977 4_4:+56349526 Msa0689320:three_prime_UTR
ATTAACATTGGCTGCAGATT+TGG 0.324617 4_4:-56348477 None:intergenic
AGTGTTTAAGCTGTATTTAC+CGG 0.350418 4_4:+56349450 Msa0689320:exon
TATCCCTTGGATGCATATTT+GGG 0.359069 4_4:+56349603 Msa0689320:three_prime_UTR
CGTGTATATGCCGAGGAAAA+TGG 0.363462 4_4:+56348431 Msa0689320:CDS
AACATGGTCATGGCTCTTGC+TGG 0.370648 4_4:+56347844 Msa0689320:CDS
GTGGTGCAGGAATCAACAAT+AGG 0.376165 4_4:+56346298 Msa0689320:intron
CGTAGCCATGAGAAGAGAAT+TGG 0.383455 4_4:-56344834 None:intergenic
CAGGTTCTTCTTGGTGATAT+GGG 0.397120 4_4:+56344962 Msa0689320:intron
AGATTTAAGCTTTGAAGTTA+GGG 0.398448 4_4:-56344768 None:intergenic
ATAGACCTGCCGAAGGATCT+AGG 0.399113 4_4:+56349407 Msa0689320:CDS
GAATATCTAAATTATGTTCC+CGG 0.401727 4_4:-56349697 None:intergenic
CAAGAGCCATGACCATGTTT+GGG 0.423378 4_4:-56347840 None:intergenic
TTTATGTACTGCACAGAACT+TGG 0.427414 4_4:+56349508 Msa0689320:three_prime_UTR
TGGTGCAGGAATCAACAATA+GGG 0.434766 4_4:+56346299 Msa0689320:intron
CTTCTTGGTGATATGGGTGC+TGG 0.450654 4_4:+56344968 Msa0689320:CDS
GATCGAAAGTGAAGAGAGAA+AGG 0.471446 4_4:-56344808 None:intergenic
CGATGCAGCCCTAGATCCTT+CGG 0.472784 4_4:-56349416 None:intergenic
ATTTGCCACACAGAACTTGT+TGG 0.477154 4_4:+56349572 Msa0689320:three_prime_UTR
CAGCCAGCTCAAAACCCAGC+AGG 0.480898 4_4:+56349370 Msa0689320:CDS
TCAACAAGAACCATCCCTGC+TGG 0.485332 4_4:-56349385 None:intergenic
ATAAAATACATCATTAACAT+TGG 0.495428 4_4:-56348489 None:intergenic
TGCTGGCAACAAATCTGACT+TGG 0.506651 4_4:+56347861 Msa0689320:CDS
AGCTCAAAACCCAGCAGGGA+TGG 0.507722 4_4:+56349375 Msa0689320:CDS
AATATCTAAATTATGTTCCC+GGG 0.515074 4_4:-56349696 None:intergenic
CTATAGTCTAAAATATCTGT+TGG 0.524888 4_4:+56349640 Msa0689320:three_prime_UTR
TAGACTATAGATTTATAGCA+AGG 0.538228 4_4:-56349627 None:intergenic
TTTGAGATTTGGGACACAGC+AGG 0.542819 4_4:+56346370 Msa0689320:CDS
AAATTGCATTCATATACTGT+TGG 0.548433 4_4:-56349553 None:intergenic
TAGACCTGCCGAAGGATCTA+GGG 0.549720 4_4:+56349408 Msa0689320:CDS
TCGATCCAATTCTCTTCTCA+TGG 0.551685 4_4:+56344829 Msa0689320:exon
TTATGTACTGCACAGAACTT+GGG 0.560984 4_4:+56349509 Msa0689320:three_prime_UTR
CAACAAGAACCATCCCTGCT+GGG 0.567898 4_4:-56349384 None:intergenic
AGGACCCAAATATGCATCCA+AGG 0.569874 4_4:-56349607 None:intergenic
CCTTCTCACGAGCTAAGAAG+TGG 0.589371 4_4:+56347107 Msa0689320:CDS
ACAAGAGAGATACCATAGCT+TGG 0.597101 4_4:+56346393 Msa0689320:CDS
GCAGCCCTAGATCCTTCGGC+AGG 0.598606 4_4:-56349412 None:intergenic
ATTGGCTGCAGATTTGGCAG+AGG 0.603013 4_4:-56348471 None:intergenic
AATACATGGGAGCCAAGCTA+TGG 0.603780 4_4:-56346405 None:intergenic
GCTTGCAGGCAACCCAAACA+TGG 0.608135 4_4:+56347828 Msa0689320:intron
GGACCCAAATATGCATCCAA+GGG 0.612652 4_4:-56349606 None:intergenic
AACAGCTAAAAGATTACCAA+GGG 0.615040 4_4:+56349345 Msa0689320:intron
CCACTTCTTAGCTCGTGAGA+AGG 0.618362 4_4:-56347107 None:intergenic
AGCCAGCTCAAAACCCAGCA+GGG 0.622894 4_4:+56349371 Msa0689320:CDS
AGGCAACCCAAACATGGTCA+TGG 0.632739 4_4:+56347834 Msa0689320:intron
AAACAGCTAAAAGATTACCA+AGG 0.641621 4_4:+56349344 Msa0689320:intron
CTTGTTGATAGACCTGCCGA+AGG 0.644031 4_4:+56349400 Msa0689320:CDS
GGAAGCTCGTGTATATGCCG+AGG 0.658380 4_4:+56348424 Msa0689320:intron
ATTAGCAGTAAATGACGCAA+CGG 0.668502 4_4:+56346342 Msa0689320:CDS
GGTGCAGGAATCAACAATAG+GGG 0.672375 4_4:+56346300 Msa0689320:intron
CTTCTCACGAGCTAAGAAGT+GGG 0.674595 4_4:+56347108 Msa0689320:CDS
TTGAACCAACAAGTTCTGTG+TGG 0.689121 4_4:-56349577 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACAATACAAATTAAAAA+GGG - chr4_4:56349480-56349499 None:intergenic 10.0%
!! ATCTATAATATTTAACATGA+TGG + chr4_4:56346587-56346606 Msa0689320:intron 15.0%
!!! TAACATATCAATTTTAAAAC+AGG - chr4_4:56346643-56346662 None:intergenic 15.0%
!! AATAACTTATTAATCATTTG+AGG + chr4_4:56347360-56347379 Msa0689320:intron 15.0%
!!! GATTATTGATTATAGTATAT+TGG - chr4_4:56348355-56348374 None:intergenic 15.0%
!! ATAAAATACATCATTAACAT+TGG - chr4_4:56348492-56348511 None:intergenic 15.0%
!!! AATGATGTATTTTATGAAAT+AGG + chr4_4:56348497-56348516 Msa0689320:CDS 15.0%
!! CAAAACAATACAAATTAAAA+AGG - chr4_4:56349481-56349500 None:intergenic 15.0%
!! ATCAGAATTAAAAAAGATGA+AGG - chr4_4:56344916-56344935 None:intergenic 20.0%
!!! TCATCATTTTTGATTTGATT+AGG + chr4_4:56345050-56345069 Msa0689320:intron 20.0%
!!! AAGATTTTTCAATTAGAAGT+TGG + chr4_4:56345152-56345171 Msa0689320:intron 20.0%
!!! AGATTTTTCAATTAGAAGTT+GGG + chr4_4:56345153-56345172 Msa0689320:intron 20.0%
!!! ACTAATTTTCAAAGTTATTG+AGG + chr4_4:56345223-56345242 Msa0689320:intron 20.0%
!! TACAATAAATAATTTCGTGA+TGG + chr4_4:56345663-56345682 Msa0689320:intron 20.0%
!! AATTGAATGTAAATTTGTGT+AGG - chr4_4:56345991-56346010 None:intergenic 20.0%
!!! GTAAGTATAAGTTAGAATTT+TGG + chr4_4:56346085-56346104 Msa0689320:intron 20.0%
!!! ATTTTGTTCACAAGTTTATA+TGG + chr4_4:56346269-56346288 Msa0689320:intron 20.0%
!! TCAAATAATAAGTATCATTC+TGG - chr4_4:56346783-56346802 None:intergenic 20.0%
!!! AATTTTGTACCAATTATAGT+TGG - chr4_4:56346892-56346911 None:intergenic 20.0%
!! ACTATAATTGGTACAAAATT+TGG + chr4_4:56346892-56346911 Msa0689320:intron 20.0%
!! TAGAATTGATATATTGCAAA+AGG + chr4_4:56347210-56347229 Msa0689320:intron 20.0%
!!! GTTTTTACTAGATTCAATTT+TGG + chr4_4:56347337-56347356 Msa0689320:intron 20.0%
!! ATTCTTAATCAACATACAAT+AGG + chr4_4:56347640-56347659 Msa0689320:intron 20.0%
!! CAGATTAAAGCATATATAAT+AGG - chr4_4:56348533-56348552 None:intergenic 20.0%
!!! AAATGGTCTTATTTTATTCT+TGG + chr4_4:56348557-56348576 Msa0689320:intron 20.0%
!!! CTAAACTTTCCTTTTTATAA+GGG - chr4_4:56348589-56348608 None:intergenic 20.0%
!! CTTATAAAAAGGAAAGTTTA+GGG + chr4_4:56348588-56348607 Msa0689320:intron 20.0%
!! TTATAAAAAGGAAAGTTTAG+GGG + chr4_4:56348589-56348608 Msa0689320:intron 20.0%
!! TTTATCAAATCTTCTCTAAT+TGG + chr4_4:56348734-56348753 Msa0689320:intron 20.0%
!! CATGAAATTTAACAGAAATT+CGG - chr4_4:56349206-56349225 None:intergenic 20.0%
!! ATCATAAAATGTAGATCAAT+TGG - chr4_4:56349243-56349262 None:intergenic 20.0%
!!! TTAATTTGTATTGTTTTGAG+TGG + chr4_4:56349483-56349502 Msa0689320:three_prime_UTR 20.0%
!!! AGATTTAAGCTTTGAAGTTA+GGG - chr4_4:56344771-56344790 None:intergenic 25.0%
!!! AAGATTTAAGCTTTGAAGTT+AGG - chr4_4:56344772-56344791 None:intergenic 25.0%
! GATTAAAAAACGAAGTTAGA+GGG - chr4_4:56344943-56344962 None:intergenic 25.0%
! TGATTAAAAAACGAAGTTAG+AGG - chr4_4:56344944-56344963 None:intergenic 25.0%
!!! TCTAACTTCGTTTTTTAATC+AGG + chr4_4:56344943-56344962 Msa0689320:intron 25.0%
!!! TTTTTTAATCAGGTTCTTCT+TGG + chr4_4:56344953-56344972 Msa0689320:intron 25.0%
!!! TCTTGTTTTAAGATTTGTCA+AGG + chr4_4:56345000-56345019 Msa0689320:CDS 25.0%
!!! CTTGTTTTAAGATTTGTCAA+GGG + chr4_4:56345001-56345020 Msa0689320:CDS 25.0%
! TACAATAAATAACTTCGTGA+TGG + chr4_4:56345479-56345498 Msa0689320:intron 25.0%
! AAATAATTTCGTGATGGTTA+TGG + chr4_4:56345669-56345688 Msa0689320:intron 25.0%
! CCACTAATAATGTAAGAAAA+TGG - chr4_4:56345850-56345869 None:intergenic 25.0%
!! CCATTTTCTTACATTATTAG+TGG + chr4_4:56345847-56345866 Msa0689320:intron 25.0%
!!! AGCTTTAAATAATTGTAGTC+TGG + chr4_4:56346108-56346127 Msa0689320:intron 25.0%
! TTTAAATAATTGTAGTCTGG+TGG + chr4_4:56346111-56346130 Msa0689320:intron 25.0%
! TTAAATAATTGTAGTCTGGT+GGG + chr4_4:56346112-56346131 Msa0689320:intron 25.0%
! ATTATGTTAATGATGCTTCT+GGG + chr4_4:56346182-56346201 Msa0689320:intron 25.0%
!! AACGGTTAAATTTGAGATTT+GGG + chr4_4:56346360-56346379 Msa0689320:CDS 25.0%
! CAAAATTACAAGTCAAAAAC+TGG - chr4_4:56346535-56346554 None:intergenic 25.0%
! TGCGAAGTATAACTTAAAAA+TGG + chr4_4:56346702-56346721 Msa0689320:intron 25.0%
! TTCATACTTATTAAACTTCC+AGG - chr4_4:56346751-56346770 None:intergenic 25.0%
! ATATTATCAGCTCTTTATCA+GGG + chr4_4:56346807-56346826 Msa0689320:intron 25.0%
!! AATTGTAATGAGGATTTTTC+TGG - chr4_4:56346847-56346866 None:intergenic 25.0%
! TATTCGTCTAATTTCTCAAT+AGG + chr4_4:56347046-56347065 Msa0689320:intron 25.0%
! ATTCGTCTAATTTCTCAATA+GGG + chr4_4:56347047-56347066 Msa0689320:intron 25.0%
!!! AAAGCAAGGTATTAACTTTT+TGG + chr4_4:56347145-56347164 Msa0689320:intron 25.0%
! AAACATAAAAGATAACACGA+GGG - chr4_4:56347321-56347340 None:intergenic 25.0%
! AAAACATAAAAGATAACACG+AGG - chr4_4:56347322-56347341 None:intergenic 25.0%
!! TGTTTTATAATAGAACAGCA+TGG + chr4_4:56347397-56347416 Msa0689320:intron 25.0%
! CATGGTATAAAAAGCAATAT+TGG - chr4_4:56347930-56347949 None:intergenic 25.0%
! GTCAAAATTGAAGTTTATGA+TGG - chr4_4:56348283-56348302 None:intergenic 25.0%
!!! TAATCAATAATCACTTTTCC+TGG + chr4_4:56348363-56348382 Msa0689320:intron 25.0%
!! CCTAAACTTTCCTTTTTATA+AGG - chr4_4:56348590-56348609 None:intergenic 25.0%
! CCTTATAAAAAGGAAAGTTT+AGG + chr4_4:56348587-56348606 Msa0689320:intron 25.0%
! AGACTTTATGAATTATGAGA+AGG - chr4_4:56348795-56348814 None:intergenic 25.0%
! TTCATAAAGTCTTCTCTAAT+TGG + chr4_4:56348803-56348822 Msa0689320:intron 25.0%
!! CAAAAAGGGTACATATAATA+TGG - chr4_4:56348897-56348916 None:intergenic 25.0%
!! CATATTATATGTACCCTTTT+TGG + chr4_4:56348895-56348914 Msa0689320:intron 25.0%
! AACATTAAAGTGACCAAAAA+GGG - chr4_4:56348911-56348930 None:intergenic 25.0%
! AAAGTGTAATAAGGACAAAA+GGG - chr4_4:56348946-56348965 None:intergenic 25.0%
! TAAAGTGTAATAAGGACAAA+AGG - chr4_4:56348947-56348966 None:intergenic 25.0%
! TGTTGCAATAAAGTGTAATA+AGG - chr4_4:56348955-56348974 None:intergenic 25.0%
! CCTATGAAAAAACAGAAATT+AGG - chr4_4:56349068-56349087 None:intergenic 25.0%
!!! CCTAATTTCTGTTTTTTCAT+AGG + chr4_4:56349065-56349084 Msa0689320:intron 25.0%
! TAATCAAAGTTAGCAGTTTA+TGG - chr4_4:56349297-56349316 None:intergenic 25.0%
! CAATACAAATTAAAAAGGGA+AGG - chr4_4:56349476-56349495 None:intergenic 25.0%
! AAATTGCATTCATATACTGT+TGG - chr4_4:56349556-56349575 None:intergenic 25.0%
! TAGACTATAGATTTATAGCA+AGG - chr4_4:56349630-56349649 None:intergenic 25.0%
!! CTATAGTCTAAAATATCTGT+TGG + chr4_4:56349640-56349659 Msa0689320:three_prime_UTR 25.0%
!! TAATAAAATGAGATTTTGCC+CGG + chr4_4:56349678-56349697 Msa0689320:three_prime_UTR 25.0%
!! ATTCTATTGCTTTTCGCTTA+CGG - chr4_4:56344684-56344703 None:intergenic 30.0%
!! AGCTTAAATCTTTCGCTTTT+TGG + chr4_4:56344780-56344799 Msa0689320:five_prime_UTR 30.0%
!!! GCTTAAATCTTTCGCTTTTT+GGG + chr4_4:56344781-56344800 Msa0689320:five_prime_UTR 30.0%
CAACAATCTCAATGCTAAAT+TGG + chr4_4:56344865-56344884 Msa0689320:CDS 30.0%
! AGGAAGTTGTTTAAGTTCAA+TGG + chr4_4:56345070-56345089 Msa0689320:intron 30.0%
! GGAAGTTGTTTAAGTTCAAT+GGG + chr4_4:56345071-56345090 Msa0689320:intron 30.0%
AAATAACTTCGTGATGGTTA+TGG + chr4_4:56345485-56345504 Msa0689320:intron 30.0%
TAGCACTTACACTTTGAATA+AGG + chr4_4:56345598-56345617 Msa0689320:intron 30.0%
TAAATAATTGTAGTCTGGTG+GGG + chr4_4:56346113-56346132 Msa0689320:intron 30.0%
! TTTCTTCTTTCTTTTCTCTG+AGG + chr4_4:56346147-56346166 Msa0689320:intron 30.0%
GATTATGTTAATGATGCTTC+TGG + chr4_4:56346181-56346200 Msa0689320:intron 30.0%
! CAAGTTTATATGGTCTTTTG+TGG + chr4_4:56346279-56346298 Msa0689320:intron 30.0%
! CAACGGTTAAATTTGAGATT+TGG + chr4_4:56346359-56346378 Msa0689320:CDS 30.0%
! TTTTTGAATACCTACTTCGT+TGG + chr4_4:56346499-56346518 Msa0689320:intron 30.0%
! TTTTGAATACCTACTTCGTT+GGG + chr4_4:56346500-56346519 Msa0689320:intron 30.0%
AAAAATGTTCTGATTCTGAC+TGG + chr4_4:56346662-56346681 Msa0689320:intron 30.0%
AAAATGTTCTGATTCTGACT+GGG + chr4_4:56346663-56346682 Msa0689320:intron 30.0%
CATATTATCAGCTCTTTATC+AGG + chr4_4:56346806-56346825 Msa0689320:intron 30.0%
TCATTACAATTGTATGCACA+GGG + chr4_4:56346856-56346875 Msa0689320:intron 30.0%
!!! CATCAATTTTTTCCTAAACG+TGG + chr4_4:56346945-56346964 Msa0689320:intron 30.0%
TACTTCTATCTTCTATTCAC+AGG + chr4_4:56347081-56347100 Msa0689320:intron 30.0%
!!! AGGTATTAACTTTTTGGTTC+AGG + chr4_4:56347151-56347170 Msa0689320:intron 30.0%
TAAAACCATTTCCAAACTTC+TGG + chr4_4:56347248-56347267 Msa0689320:intron 30.0%
ATGGAAAATGCTTTACTAGA+AGG - chr4_4:56347280-56347299 None:intergenic 30.0%
TCAAAAGTTAAATGTGTCTC+TGG - chr4_4:56347522-56347541 None:intergenic 30.0%
TTACTATACATCTTGCTAGA+AGG + chr4_4:56347596-56347615 Msa0689320:intron 30.0%
TTCCTTTCTCTAGTAATACT+TGG + chr4_4:56347737-56347756 Msa0689320:intron 30.0%
AACCAAGTATTACTAGAGAA+AGG - chr4_4:56347742-56347761 None:intergenic 30.0%
TTCTCTAGTAATACTTGGTT+TGG + chr4_4:56347742-56347761 Msa0689320:intron 30.0%
GAGAATATTGACACTTACTT+CGG - chr4_4:56347908-56347927 None:intergenic 30.0%
! TGTTATTGATTGCTTAGGAT+AGG - chr4_4:56348014-56348033 None:intergenic 30.0%
!! TGCTTTGTTATTGATTGCTT+AGG - chr4_4:56348019-56348038 None:intergenic 30.0%
! CAATCAATAACAAAGCATCA+GGG + chr4_4:56348022-56348041 Msa0689320:intron 30.0%
! AATCAATAACAAAGCATCAG+GGG + chr4_4:56348023-56348042 Msa0689320:intron 30.0%
TTAGCAAAGAAGTTAATCAC+AGG + chr4_4:56348067-56348086 Msa0689320:intron 30.0%
!!! TCAATTGCTTTTGAAGTGTT+TGG + chr4_4:56348136-56348155 Msa0689320:intron 30.0%
! AGCATGATTGGTAATTTCAT+AGG + chr4_4:56348321-56348340 Msa0689320:intron 30.0%
TTTCGATTCATTGATATTGC+AGG + chr4_4:56348403-56348422 Msa0689320:intron 30.0%
! GAAAAACAAACCATTTTCCT+CGG - chr4_4:56348444-56348463 None:intergenic 30.0%
!!! GGAAAATGGTTTGTTTTTCA+TGG + chr4_4:56348445-56348464 Msa0689320:CDS 30.0%
ATGCTTTAATCTGCAGAAAA+TGG + chr4_4:56348540-56348559 Msa0689320:intron 30.0%
TGGTTGAATCCCTTATAAAA+AGG + chr4_4:56348577-56348596 Msa0689320:intron 30.0%
TGAATATGATAGCAATGTCT+TGG - chr4_4:56348689-56348708 None:intergenic 30.0%
CAACATTAAAGTGACCAAAA+AGG - chr4_4:56348912-56348931 None:intergenic 30.0%
ACACTTTATTGCAACATTCA+TGG + chr4_4:56348959-56348978 Msa0689320:intron 30.0%
CACTTTATTGCAACATTCAT+GGG + chr4_4:56348960-56348979 Msa0689320:intron 30.0%
TAGGCAAAATGTTAGTAAGT+CGG + chr4_4:56349084-56349103 Msa0689320:intron 30.0%
TACACAAGCAATTGTAAGTT+AGG - chr4_4:56349325-56349344 None:intergenic 30.0%
AAACAGCTAAAAGATTACCA+AGG + chr4_4:56349344-56349363 Msa0689320:intron 30.0%
AACAGCTAAAAGATTACCAA+GGG + chr4_4:56349345-56349364 Msa0689320:intron 30.0%
AGTGTTTAAGCTGTATTTAC+CGG + chr4_4:56349450-56349469 Msa0689320:exon 30.0%
! AATAAAATGAGATTTTGCCC+GGG + chr4_4:56349679-56349698 Msa0689320:three_prime_UTR 30.0%
ACATTACAGTGACAACATGT+CGG - chr4_4:56345301-56345320 None:intergenic 35.0%
ATGTTGTCACTGTAATGTGA+TGG + chr4_4:56345303-56345322 Msa0689320:intron 35.0%
TCACTGTAATGTGATGGTTA+CGG + chr4_4:56345309-56345328 Msa0689320:intron 35.0%
GTCATGTATTACCTATGCTT+TGG + chr4_4:56345344-56345363 Msa0689320:intron 35.0%
AAGACTTGAATCCAAAGCAT+AGG - chr4_4:56345358-56345377 None:intergenic 35.0%
TAGCCCTTACACTTTGATTA+AGG + chr4_4:56345415-56345434 Msa0689320:intron 35.0%
CCTCCTTAATCAAAGTGTAA+GGG - chr4_4:56345421-56345440 None:intergenic 35.0%
ACCTCCTTAATCAAAGTGTA+AGG - chr4_4:56345422-56345441 None:intergenic 35.0%
AAGACTTGAATCCGAAGTAT+CGG - chr4_4:56345541-56345560 None:intergenic 35.0%
TAATTTCGTGATGGTTATGG+AGG + chr4_4:56345672-56345691 Msa0689320:intron 35.0%
!! TACTAGTAAGTTCTGAAGCA+CGG + chr4_4:56345904-56345923 Msa0689320:intron 35.0%
AAATAATTGTAGTCTGGTGG+GGG + chr4_4:56346114-56346133 Msa0689320:intron 35.0%
!!! TTTTGAGCCCTGTTATTTTG+TGG + chr4_4:56346211-56346230 Msa0689320:intron 35.0%
! GGTGATGTGCTTTAAATGTA+TGG + chr4_4:56346236-56346255 Msa0689320:intron 35.0%
ATTAGCAGTAAATGACGCAA+CGG + chr4_4:56346342-56346361 Msa0689320:CDS 35.0%
! GATGGTTAGTTAACAGACAT+AGG + chr4_4:56346605-56346624 Msa0689320:intron 35.0%
CTGTGCATACAATTGTAATG+AGG - chr4_4:56346857-56346876 None:intergenic 35.0%
CTCATTACAATTGTATGCAC+AGG + chr4_4:56346855-56346874 Msa0689320:intron 35.0%
CCAATTATAGTTGGAACAAG+TGG - chr4_4:56346883-56346902 None:intergenic 35.0%
CCACTTGTTCCAACTATAAT+TGG + chr4_4:56346880-56346899 Msa0689320:intron 35.0%
GAAGAGATCGAATATGCTAA+CGG + chr4_4:56346967-56346986 Msa0689320:intron 35.0%
AAGAGATCGAATATGCTAAC+GGG + chr4_4:56346968-56346987 Msa0689320:intron 35.0%
! GGATTCTTTCTTTTGTCTTG+TGG + chr4_4:56346989-56347008 Msa0689320:intron 35.0%
! TCTTTCTTTTGTCTTGTGGT+TGG + chr4_4:56346993-56347012 Msa0689320:intron 35.0%
! CTTTCTTTTGTCTTGTGGTT+GGG + chr4_4:56346994-56347013 Msa0689320:intron 35.0%
! TGCATGTAAGTATTGTGAAC+AGG + chr4_4:56347467-56347486 Msa0689320:intron 35.0%
! GCATGTAAGTATTGTGAACA+GGG + chr4_4:56347468-56347487 Msa0689320:intron 35.0%
CAATCAAACATTGTCTGCTT+TGG + chr4_4:56347711-56347730 Msa0689320:intron 35.0%
! AATTTCATGTTGTTGCTTGC+AGG + chr4_4:56347814-56347833 Msa0689320:intron 35.0%
GCACATAACACTTACTAACA+TGG - chr4_4:56347948-56347967 None:intergenic 35.0%
! GCAATCAATAACAAAGCATC+AGG + chr4_4:56348021-56348040 Msa0689320:intron 35.0%
CTCCATCAGATTTCACTAAT+TGG + chr4_4:56348105-56348124 Msa0689320:intron 35.0%
GACCAATTAGTGAAATCTGA+TGG - chr4_4:56348110-56348129 None:intergenic 35.0%
!!! TTGCTTTTGAAGTGTTTGGA+AGG + chr4_4:56348140-56348159 Msa0689320:intron 35.0%
!!! TGCTTTTGAAGTGTTTGGAA+GGG + chr4_4:56348141-56348160 Msa0689320:intron 35.0%
ATTACCAATCATGCTGCAAT+GGG - chr4_4:56348316-56348335 None:intergenic 35.0%
AATTACCAATCATGCTGCAA+TGG - chr4_4:56348317-56348336 None:intergenic 35.0%
ATCGAAAGTGATAAACCAGT+AGG - chr4_4:56348390-56348409 None:intergenic 35.0%
! ATTAACATTGGCTGCAGATT+TGG - chr4_4:56348480-56348499 None:intergenic 35.0%
AATATTATTAGCCCGAAGAG+TGG + chr4_4:56348612-56348631 Msa0689320:intron 35.0%
ATATTATTAGCCCGAAGAGT+GGG + chr4_4:56348613-56348632 Msa0689320:intron 35.0%
CTCTAATTGGTTATAAGCCA+TGG + chr4_4:56348747-56348766 Msa0689320:intron 35.0%
AGTCTTCTCTAATTGGCTAT+TGG + chr4_4:56348810-56348829 Msa0689320:intron 35.0%
AGGACAAAAGGGAAAATTTC+TGG - chr4_4:56348935-56348954 None:intergenic 35.0%
GATACGCCAATAACATAAAG+CGG - chr4_4:56349014-56349033 None:intergenic 35.0%
GAACCTCCTTAAAACTCATT+TGG + chr4_4:56349138-56349157 Msa0689320:intron 35.0%
!!! ACACCAAATGAGTTTTAAGG+AGG - chr4_4:56349144-56349163 None:intergenic 35.0%
! GAGACACCAAATGAGTTTTA+AGG - chr4_4:56349147-56349166 None:intergenic 35.0%
ACAAATTAAAAAGGGAAGGC+CGG - chr4_4:56349472-56349491 None:intergenic 35.0%
TTTATGTACTGCACAGAACT+TGG + chr4_4:56349508-56349527 Msa0689320:three_prime_UTR 35.0%
TTATGTACTGCACAGAACTT+GGG + chr4_4:56349509-56349528 Msa0689320:three_prime_UTR 35.0%
CTTGGGTTATCACTGTTATA+TGG + chr4_4:56349526-56349545 Msa0689320:three_prime_UTR 35.0%
! GTTGGTTCAAAAATATCCCT+TGG + chr4_4:56349590-56349609 Msa0689320:three_prime_UTR 35.0%
ATATCCCTTGGATGCATATT+TGG + chr4_4:56349602-56349621 Msa0689320:three_prime_UTR 35.0%
TATCCCTTGGATGCATATTT+GGG + chr4_4:56349603-56349622 Msa0689320:three_prime_UTR 35.0%
GATCGAAAGTGAAGAGAGAA+AGG - chr4_4:56344811-56344830 None:intergenic 40.0%
TCGATCCAATTCTCTTCTCA+TGG + chr4_4:56344829-56344848 Msa0689320:exon 40.0%
ATGAAGGAAGAGAAGAACAG+AGG - chr4_4:56344900-56344919 None:intergenic 40.0%
! TCAGGTTCTTCTTGGTGATA+TGG + chr4_4:56344961-56344980 Msa0689320:intron 40.0%
! CAGGTTCTTCTTGGTGATAT+GGG + chr4_4:56344962-56344981 Msa0689320:intron 40.0%
GGGTCAATTTCTCGAATTTC+AGG + chr4_4:56345021-56345040 Msa0689320:CDS 40.0%
TCTTGTCTGATGTTCCACAA+TGG + chr4_4:56345374-56345393 Msa0689320:intron 40.0%
CCCTTACACTTTGATTAAGG+AGG + chr4_4:56345418-56345437 Msa0689320:intron 40.0%
TACCACAGTAATGACACATG+CGG - chr4_4:56345454-56345473 None:intergenic 40.0%
TAACTTCGTGATGGTTATGG+AGG + chr4_4:56345488-56345507 Msa0689320:intron 40.0%
CTAACTACTACCTCCATTGT+GGG - chr4_4:56345390-56345409 None:intergenic 40.0%
TAGTGACTAGTGACACATGT+CGG - chr4_4:56345740-56345759 None:intergenic 40.0%
TGTCAGTGTCAGTGTTTCAT+AGG + chr4_4:56345870-56345889 Msa0689320:intron 40.0%
CAGGAAACACCTAATCTAAG+AGG - chr4_4:56345933-56345952 None:intergenic 40.0%
TATCCATGTCAGTGTCTTGT+CGG + chr4_4:56346045-56346064 Msa0689320:intron 40.0%
TCACCAGCCACAAAATAACA+GGG - chr4_4:56346221-56346240 None:intergenic 40.0%
ATCACCAGCCACAAAATAAC+AGG - chr4_4:56346222-56346241 None:intergenic 40.0%
! TATATGGTCTTTTGTGGTGC+AGG + chr4_4:56346285-56346304 Msa0689320:intron 40.0%
TGGTGCAGGAATCAACAATA+GGG + chr4_4:56346299-56346318 Msa0689320:intron 40.0%
ACAAGAGAGATACCATAGCT+TGG + chr4_4:56346393-56346412 Msa0689320:CDS 40.0%
ATTCGATCTCTTCCACGTTT+AGG - chr4_4:56346960-56346979 None:intergenic 40.0%
TCCAAGAGCTTCAAAAAGCA+AGG + chr4_4:56347131-56347150 Msa0689320:CDS 40.0%
!!! ACCTTGCTTTTTGAAGCTCT+TGG - chr4_4:56347135-56347154 None:intergenic 40.0%
ACCATTTCCAAACTTCTGGA+TGG + chr4_4:56347252-56347271 Msa0689320:intron 40.0%
ACCATCCAGAAGTTTGGAAA+TGG - chr4_4:56347256-56347275 None:intergenic 40.0%
GACATTGACATTGGCAGATA+TGG - chr4_4:56347299-56347318 None:intergenic 40.0%
TATTATTAGCCCGAAGAGTG+GGG + chr4_4:56348614-56348633 Msa0689320:intron 40.0%
CAATGTCTTGGAGTGTAAAG+TGG - chr4_4:56348677-56348696 None:intergenic 40.0%
GAAGACAAGTTTCAGGAACA+AGG - chr4_4:56348871-56348890 None:intergenic 40.0%
! ATGGACTGAAGACAAGTTTC+AGG - chr4_4:56348878-56348897 None:intergenic 40.0%
! ATTTTCCTTCTGTTCCTAGC+AGG + chr4_4:56348985-56349004 Msa0689320:intron 40.0%
AGGCTTCCGCTTTATGTTAT+TGG + chr4_4:56349005-56349024 Msa0689320:intron 40.0%
GGAATATGTCCCACATATGT+AGG - chr4_4:56349185-56349204 None:intergenic 40.0%
ATTTGCCACACAGAACTTGT+TGG + chr4_4:56349572-56349591 Msa0689320:three_prime_UTR 40.0%
TTGAACCAACAAGTTCTGTG+TGG - chr4_4:56349580-56349599 None:intergenic 40.0%
CGTAGCCATGAGAAGAGAAT+TGG - chr4_4:56344837-56344856 None:intergenic 45.0%
CTGTAATGTGATGGTTACGG+AGG + chr4_4:56345312-56345331 Msa0689320:intron 45.0%
TGTCTGATGTTCCACAATGG+AGG + chr4_4:56345377-56345396 Msa0689320:intron 45.0%
GCTAACTACTACCTCCATTG+TGG - chr4_4:56345391-56345410 None:intergenic 45.0%
TATCGGCAATACATGGCTGA+TGG - chr4_4:56345524-56345543 None:intergenic 45.0%
GCCATGTATTGCCGATACTT+CGG + chr4_4:56345527-56345546 Msa0689320:intron 45.0%
!! TCCGAAGTATCGGCAATACA+TGG - chr4_4:56345531-56345550 None:intergenic 45.0%
TCTTGTCTGATGTCCCACAA+TGG + chr4_4:56345557-56345576 Msa0689320:intron 45.0%
GCTAACTACTACCTCCATTG+TGG - chr4_4:56345391-56345410 None:intergenic 45.0%
ACCACAGTAGTGACACATGT+CGG - chr4_4:56345637-56345656 None:intergenic 45.0%
ATGTAAACACACGCTGACAC+AGG - chr4_4:56345817-56345836 None:intergenic 45.0%
TGACATGGATATGTCGACAC+AGG - chr4_4:56346036-56346055 None:intergenic 45.0%
GTGGTGCAGGAATCAACAAT+AGG + chr4_4:56346298-56346317 Msa0689320:intron 45.0%
GGTGCAGGAATCAACAATAG+GGG + chr4_4:56346300-56346319 Msa0689320:intron 45.0%
! TTTGAGATTTGGGACACAGC+AGG + chr4_4:56346370-56346389 Msa0689320:CDS 45.0%
AATACATGGGAGCCAAGCTA+TGG - chr4_4:56346408-56346427 None:intergenic 45.0%
TTGGCTCCCATGTATTACAG+AGG + chr4_4:56346412-56346431 Msa0689320:intron 45.0%
CAAAGATTGCCCAACGAAGT+AGG - chr4_4:56346512-56346531 None:intergenic 45.0%
ATTGAGACACAACTCAGACC+TGG + chr4_4:56346730-56346749 Msa0689320:intron 45.0%
CTTCTCACGAGCTAAGAAGT+GGG + chr4_4:56347108-56347127 Msa0689320:CDS 45.0%
!! GAAGGTACCATCCAGAAGTT+TGG - chr4_4:56347262-56347281 None:intergenic 45.0%
AACACGAGGGACATTGACAT+TGG - chr4_4:56347308-56347327 None:intergenic 45.0%
CAAGAGCCATGACCATGTTT+GGG - chr4_4:56347843-56347862 None:intergenic 45.0%
TGCTGGCAACAAATCTGACT+TGG + chr4_4:56347861-56347880 Msa0689320:CDS 45.0%
!! ATCACTTTTCCTGGACCTAC+TGG + chr4_4:56348372-56348391 Msa0689320:intron 45.0%
AGTGATAAACCAGTAGGTCC+AGG - chr4_4:56348384-56348403 None:intergenic 45.0%
CGTGTATATGCCGAGGAAAA+TGG + chr4_4:56348431-56348450 Msa0689320:CDS 45.0%
AAGAAAGCTTCCCCACTCTT+CGG - chr4_4:56348627-56348646 None:intergenic 45.0%
! AGTGGGGAAGCTTTCTTTTG+AGG + chr4_4:56348630-56348649 Msa0689320:intron 45.0%
! GTGGGGAAGCTTTCTTTTGA+GGG + chr4_4:56348631-56348650 Msa0689320:intron 45.0%
CTCTAATTGGCTATTGGCCA+TGG + chr4_4:56348816-56348835 Msa0689320:intron 45.0%
AGGTTTGGATAACTGTGCCA+TGG - chr4_4:56348836-56348855 None:intergenic 45.0%
AGGCATGTCATGAGAAGGTT+TGG - chr4_4:56348851-56348870 None:intergenic 45.0%
GAACAAGGCATGTCATGAGA+AGG - chr4_4:56348856-56348875 None:intergenic 45.0%
TCACCAATCGCCTACATATG+TGG + chr4_4:56349172-56349191 Msa0689320:intron 45.0%
CACCAATCGCCTACATATGT+GGG + chr4_4:56349173-56349192 Msa0689320:intron 45.0%
GGACCCAAATATGCATCCAA+GGG - chr4_4:56349609-56349628 None:intergenic 45.0%
AGGACCCAAATATGCATCCA+AGG - chr4_4:56349610-56349629 None:intergenic 45.0%
! CTTCTTGGTGATATGGGTGC+TGG + chr4_4:56344968-56344987 Msa0689320:CDS 50.0%
! GTCCGCATGTGTCATTACTG+TGG + chr4_4:56345449-56345468 Msa0689320:intron 50.0%
TGTCTGATGTCCCACAATGG+AGG + chr4_4:56345560-56345579 Msa0689320:intron 50.0%
! TCCGACATGTGTCACTACTG+TGG + chr4_4:56345633-56345652 Msa0689320:intron 50.0%
! TCAGTGGTGTCAGTGCTACA+CGG - chr4_4:56345771-56345790 None:intergenic 50.0%
!! GTAGCACTGACACCACTGAT+TGG + chr4_4:56345772-56345791 Msa0689320:intron 50.0%
CTGAACACGTCTCCAATCAG+TGG - chr4_4:56345787-56345806 None:intergenic 50.0%
AAACACACGCTGACACAGGT+TGG - chr4_4:56345813-56345832 None:intergenic 50.0%
GCACGGACACCTCTTAGATT+AGG + chr4_4:56345921-56345940 Msa0689320:intron 50.0%
ACACCGACAAGACACTGACA+TGG - chr4_4:56346051-56346070 None:intergenic 50.0%
!!! GAGCCCTGTTATTTTGTGGC+TGG + chr4_4:56346215-56346234 Msa0689320:intron 50.0%
GCTGCGCCTCTGTAATACAT+GGG - chr4_4:56346421-56346440 None:intergenic 50.0%
AGCTGCGCCTCTGTAATACA+TGG - chr4_4:56346422-56346441 None:intergenic 50.0%
! CTTTTGTCTTGTGGTTGGGC+TGG + chr4_4:56346998-56347017 Msa0689320:intron 50.0%
CCACTTCTTAGCTCGTGAGA+AGG - chr4_4:56347110-56347129 None:intergenic 50.0%
CCTTCTCACGAGCTAAGAAG+TGG + chr4_4:56347107-56347126 Msa0689320:CDS 50.0%
!! TGTCTCTGGCTCTCTGTACA+TGG - chr4_4:56347508-56347527 None:intergenic 50.0%
AGGCAACCCAAACATGGTCA+TGG + chr4_4:56347834-56347853 Msa0689320:intron 50.0%
GCAAGAGCCATGACCATGTT+TGG - chr4_4:56347844-56347863 None:intergenic 50.0%
AACATGGTCATGGCTCTTGC+TGG + chr4_4:56347844-56347863 Msa0689320:CDS 50.0%
TGTGTGTGTGTGTGTGTGTG+TGG + chr4_4:56348189-56348208 Msa0689320:intron 50.0%
GTGTGTGTGTGTGTGTGTGT+GGG + chr4_4:56348190-56348209 Msa0689320:intron 50.0%
GATGCCCATTGCAGCATGAT+TGG + chr4_4:56348309-56348328 Msa0689320:intron 50.0%
ATTGGCTGCAGATTTGGCAG+AGG - chr4_4:56348474-56348493 None:intergenic 50.0%
AGAAAGCTTCCCCACTCTTC+GGG - chr4_4:56348626-56348645 None:intergenic 50.0%
ATTCAGACAACTGTGCGCCA+TGG - chr4_4:56348767-56348786 None:intergenic 50.0%
ACATAAAGCGGAAGCCTGCT+AGG - chr4_4:56349002-56349021 None:intergenic 50.0%
GTCCCACATATGTAGGCGAT+TGG - chr4_4:56349178-56349197 None:intergenic 50.0%
CAACAAGAACCATCCCTGCT+GGG - chr4_4:56349387-56349406 None:intergenic 50.0%
TCAACAAGAACCATCCCTGC+TGG - chr4_4:56349388-56349407 None:intergenic 50.0%
! CTTGTTGATAGACCTGCCGA+AGG + chr4_4:56349400-56349419 Msa0689320:CDS 50.0%
ATAGACCTGCCGAAGGATCT+AGG + chr4_4:56349407-56349426 Msa0689320:CDS 50.0%
TAGACCTGCCGAAGGATCTA+GGG + chr4_4:56349408-56349427 Msa0689320:CDS 50.0%
! TCTTGTGGTTGGGCTGGATC+TGG + chr4_4:56347004-56347023 Msa0689320:intron 55.0%
GCTTGCAGGCAACCCAAACA+TGG + chr4_4:56347828-56347847 Msa0689320:intron 55.0%
TGTGTGTGTGTGTGTGTGGG+TGG + chr4_4:56348197-56348216 Msa0689320:intron 55.0%
GTGTGTGTGTGTGTGTGGGT+GGG + chr4_4:56348198-56348217 Msa0689320:intron 55.0%
TGTGTGTGTGTGTGTGGGTG+GGG + chr4_4:56348199-56348218 Msa0689320:intron 55.0%
GTGGGGGCTAGGTTTCAATC+TGG + chr4_4:56348221-56348240 Msa0689320:intron 55.0%
GGAAGCTCGTGTATATGCCG+AGG + chr4_4:56348424-56348443 Msa0689320:intron 55.0%
GGAAGCCTGCTAGGAACAGA+AGG - chr4_4:56348993-56349012 None:intergenic 55.0%
! TTTTGAGCTGGCTGAGCCCT+TGG - chr4_4:56349364-56349383 None:intergenic 55.0%
AGCCAGCTCAAAACCCAGCA+GGG + chr4_4:56349371-56349390 Msa0689320:CDS 55.0%
!!! ATCCCTGCTGGGTTTTGAGC+TGG - chr4_4:56349376-56349395 None:intergenic 55.0%
AGCTCAAAACCCAGCAGGGA+TGG + chr4_4:56349375-56349394 Msa0689320:CDS 55.0%
CGATGCAGCCCTAGATCCTT+CGG - chr4_4:56349419-56349438 None:intergenic 55.0%
TGTGTGTGTGTGGGTGGGGT+GGG + chr4_4:56348203-56348222 Msa0689320:intron 60.0%
CAGCCAGCTCAAAACCCAGC+AGG + chr4_4:56349370-56349389 Msa0689320:CDS 60.0%
TTCCTGTGTCCGACGCGCGT+CGG + chr4_4:56345947-56345966 Msa0689320:intron 65.0%
AGACAGACACCGACGCGCGT+CGG - chr4_4:56345959-56345978 None:intergenic 65.0%
GTGTGTGTGTGTGGGTGGGG+TGG + chr4_4:56348202-56348221 Msa0689320:intron 65.0%
GTGTGTGTGTGGGTGGGGTG+GGG + chr4_4:56348204-56348223 Msa0689320:intron 65.0%
TGTGTGTGTGGGTGGGGTGG+GGG + chr4_4:56348205-56348224 Msa0689320:intron 65.0%
GCAGCCCTAGATCCTTCGGC+AGG - chr4_4:56349415-56349434 None:intergenic 65.0%
CACCGACGCGCGTCGGACAC+AGG - chr4_4:56345952-56345971 None:intergenic 75.0%
GTGTGGGTGGGGTGGGGGCT+AGG + chr4_4:56348210-56348229 Msa0689320:intron 75.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 56344613 56349707 56344613 ID=Msa0689320;Name=Msa0689320
chr4_4 mRNA 56344613 56349707 56344613 ID=Msa0689320-mRNA-1;Parent=Msa0689320;Name=Msa0689320-mRNA-1;_AED=0.17;_eAED=0.17;_QI=235|0.83|0.85|1|0.83|0.85|7|257|183
chr4_4 exon 56344613 56344886 56344613 ID=Msa0689320-mRNA-1:exon:14835;Parent=Msa0689320-mRNA-1
chr4_4 exon 56344965 56345042 56344965 ID=Msa0689320-mRNA-1:exon:14836;Parent=Msa0689320-mRNA-1
chr4_4 exon 56346307 56346422 56346307 ID=Msa0689320-mRNA-1:exon:14837;Parent=Msa0689320-mRNA-1
chr4_4 exon 56347103 56347152 56347103 ID=Msa0689320-mRNA-1:exon:14838;Parent=Msa0689320-mRNA-1
chr4_4 exon 56347836 56347909 56347836 ID=Msa0689320-mRNA-1:exon:14839;Parent=Msa0689320-mRNA-1
chr4_4 exon 56348425 56348518 56348425 ID=Msa0689320-mRNA-1:exon:14840;Parent=Msa0689320-mRNA-1
chr4_4 exon 56349350 56349707 56349350 ID=Msa0689320-mRNA-1:exon:14841;Parent=Msa0689320-mRNA-1
chr4_4 five_prime_UTR 56344613 56344847 56344613 ID=Msa0689320-mRNA-1:five_prime_utr;Parent=Msa0689320-mRNA-1
chr4_4 CDS 56344848 56344886 56344848 ID=Msa0689320-mRNA-1:cds;Parent=Msa0689320-mRNA-1
chr4_4 CDS 56344965 56345042 56344965 ID=Msa0689320-mRNA-1:cds;Parent=Msa0689320-mRNA-1
chr4_4 CDS 56346307 56346422 56346307 ID=Msa0689320-mRNA-1:cds;Parent=Msa0689320-mRNA-1
chr4_4 CDS 56347103 56347152 56347103 ID=Msa0689320-mRNA-1:cds;Parent=Msa0689320-mRNA-1
chr4_4 CDS 56347836 56347909 56347836 ID=Msa0689320-mRNA-1:cds;Parent=Msa0689320-mRNA-1
chr4_4 CDS 56348425 56348518 56348425 ID=Msa0689320-mRNA-1:cds;Parent=Msa0689320-mRNA-1
chr4_4 CDS 56349350 56349450 56349350 ID=Msa0689320-mRNA-1:cds;Parent=Msa0689320-mRNA-1
chr4_4 three_prime_UTR 56349451 56349707 56349451 ID=Msa0689320-mRNA-1:three_prime_utr;Parent=Msa0689320-mRNA-1
Gene Sequence

>Msa0689320

ATGGCTACGATCGCACACAACAATCTCAATGCTAAATTGGTTCTTCTTGGTGATATGGGTGCTGGAAAATCTAGTCTTGTTTTAAGATTTGTCAAGGGTCAATTTCTCGAATTTCAGGAATCAACAATAGGGGCAGCATTTTTCTCTCAGACATTAGCAGTAAATGACGCAACGGTTAAATTTGAGATTTGGGACACAGCAGGACAAGAGAGATACCATAGCTTGGCTCCCATGATTCCTTCTCACGAGCTAAGAAGTGGGTCCAAGAGCTTCAAAAAGCAAGGCAACCCAAACATGGTCATGGCTCTTGCTGGCAACAAATCTGACTTGGAAGATAAAAGAAAAGTGACAGCCGAAGAAGCTCGTGTATATGCCGAGGAAAATGGTTTGTTTTTCATGGAGACCTCTGCCAAATCTGCAGCCAATGTTAATGATGTATTTTATGAAATAGCTAAAAGATTACCAAGGGCTCAGCCAGCTCAAAACCCAGCAGGGATGGTTCTTGTTGATAGACCTGCCGAAGGATCTAGGGCTGCATCGTGTTGTTCATAA
Protein sequence

>Msa0689320

MATIAHNNLNAKLVLLGDMGAGKSSLVLRFVKGQFLEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMIPSHELRSGSKSFKKQGNPNMVMALAGNKSDLEDKRKVTAEEARVYAEENGLFFMETSAKSAANVNDVFYEIAKRLPRAQPAQNPAGMVLVDRPAEGSRAASCCS*