AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1365800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1365800 MtrunA17_Chr3g0144691 97.191 178 5 0 1 178 1 178 7.92e-129 358
Msa1365800 MtrunA17_Chr1g0176311 27.011 174 93 5 32 171 12 185 1.50e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1365800 AT2G21620.1 76.966 178 40 1 1 178 1 177 2.11e-93 270
Msa1365800 AT2G21620.2 74.457 184 40 2 1 178 1 183 1.00e-90 263

Find 54 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCTTGTTCATGCTGTTTC+TGG 0.024473 tig0018387:+15936 Msa1365800:CDS
CTCTACTCAAAATTTATTAA+AGG 0.159462 tig0018387:-15637 None:intergenic
TGAATTTCCAAACATGAAAA+TGG 0.188960 tig0018387:-17363 None:intergenic
TAAACCTGCAGCTGTGGTTT+TGG 0.252116 tig0018387:+16921 Msa1365800:CDS
ATCAATGGTCTAATGGATTT+AGG 0.280276 tig0018387:+17265 Msa1365800:exon
GAGTCAAGTCATACACAATT+TGG 0.321342 tig0018387:-16108 None:intergenic
TTCTTGAATGTAACATTGTT+TGG 0.326541 tig0018387:+17429 Msa1365800:three_prime_UTR
AAGTGAAGATTGTAAATTAA+TGG 0.331046 tig0018387:+15704 Msa1365800:exon
GCACCTGTTGTGATCGTTCC+TGG 0.338638 tig0018387:+17143 Msa1365800:CDS
TCAAAAGCATGTTTACTGTT+TGG 0.339328 tig0018387:-15873 None:intergenic
CCAGAGCTTGAGAGGGAAAC+AGG 0.363491 tig0018387:+15804 Msa1365800:CDS
AGCTCTGGCTCAGGCACTAT+TGG 0.369995 tig0018387:-15789 None:intergenic
GAGAAACAACACAGCGCAAT+AGG 0.380672 tig0018387:-17566 None:intergenic
ACTGTTTGGACCATGATCTA+TGG 0.408420 tig0018387:-15859 None:intergenic
TTGAAACAAGCTTCTGCCTC+TGG 0.408871 tig0018387:-16947 None:intergenic
GTGATGCATCAATGGTCTAA+TGG 0.411227 tig0018387:+17258 Msa1365800:CDS
CCTGTTTCCCTCTCAAGCTC+TGG 0.412478 tig0018387:-15804 None:intergenic
ACAATCTTCACTTCACAACT+TGG 0.437242 tig0018387:-15694 None:intergenic
TCCCTCTCAAGCTCTGGCTC+AGG 0.455326 tig0018387:-15798 None:intergenic
TTTCCAGGAACGATCACAAC+AGG 0.474556 tig0018387:-17146 None:intergenic
CAGGAGAAAGAAGAAGAGGA+AGG 0.480520 tig0018387:+15823 Msa1365800:CDS
GAATTTCCAAACATGAAAAT+GGG 0.481633 tig0018387:-17362 None:intergenic
GAGGCAGAAGCTTGTTTCAA+AGG 0.482260 tig0018387:+16950 Msa1365800:CDS
GAAACAGGAGAAAGAAGAAG+AGG 0.483483 tig0018387:+15819 Msa1365800:CDS
CGGATAGTGCAAGGTGATGC+AGG 0.488351 tig0018387:+16868 Msa1365800:CDS
TTTCATGTTTGGAAATTCAT+GGG 0.492429 tig0018387:+17367 Msa1365800:three_prime_UTR
GTCCCCAAAACCACAGCTGC+AGG 0.501479 tig0018387:-16925 None:intergenic
GTATCTAACTTCGTATGTTG+TGG 0.502757 tig0018387:+17328 Msa1365800:three_prime_UTR
TGACTTGACTCAGGGGCTGA+TGG 0.515307 tig0018387:+16120 Msa1365800:CDS
GTTGTGATCGTTCCTGGAAA+AGG 0.523884 tig0018387:+17149 Msa1365800:CDS
TCCTTCTTCAGTGTGCTACA+AGG 0.530640 tig0018387:+17083 Msa1365800:intron
AGGAGAAAGAAGAAGAGGAA+GGG 0.532412 tig0018387:+15824 Msa1365800:CDS
TAAATTAATGGAGACAGTGA+TGG 0.533156 tig0018387:+15716 Msa1365800:exon
TGCCTGAGCCAGAGCTTGAG+AGG 0.541192 tig0018387:+15796 Msa1365800:CDS
AGATGCTGGTGATGCATCAA+TGG 0.543889 tig0018387:+17250 Msa1365800:intron
GATGGAGAAATTAGCGGTTG+AGG 0.552604 tig0018387:+16138 Msa1365800:CDS
ATAGTATTAGCCATAGATCA+TGG 0.553466 tig0018387:+15849 Msa1365800:CDS
AACAGGTGAAAACAGTAGCT+CGG 0.557174 tig0018387:+16848 Msa1365800:intron
AATTGTGTATGACTTGACTC+AGG 0.563614 tig0018387:+16111 Msa1365800:CDS
GAGGATTAAACCTGCAGCTG+TGG 0.569878 tig0018387:+16915 Msa1365800:CDS
GGCACTATTGGTATCAGTGA+AGG 0.576088 tig0018387:-15777 None:intergenic
GGGGCTGATGGAGAAATTAG+CGG 0.584454 tig0018387:+16132 Msa1365800:CDS
ATTGTGTATGACTTGACTCA+GGG 0.600784 tig0018387:+16112 Msa1365800:CDS
AACCAGAAACAGCATGAACA+AGG 0.607545 tig0018387:-15938 None:intergenic
GCCTGAGCCAGAGCTTGAGA+GGG 0.610344 tig0018387:+15797 Msa1365800:CDS
TGCAGGAAAAGTAATTTGCA+AGG 0.617105 tig0018387:+16885 Msa1365800:CDS
AACAGCATGAACAAGGTGGA+TGG 0.627059 tig0018387:-15931 None:intergenic
ACAGTAGCTCGGATAGTGCA+AGG 0.631985 tig0018387:+16859 Msa1365800:CDS
AAACAAACTACTATGCCAGA+AGG 0.637457 tig0018387:-17495 None:intergenic
CAGAAACAGCATGAACAAGG+TGG 0.686182 tig0018387:-15935 None:intergenic
CAACAGGTGCTGCTTTACAG+TGG 0.687014 tig0018387:-17130 None:intergenic
AGTGTGCTACAAGGAAGCGT+CGG 0.687872 tig0018387:+17092 Msa1365800:intron
TAATTTGCAAGGAAGCAGAG+AGG 0.695628 tig0018387:+16896 Msa1365800:CDS
TTGTGTATGACTTGACTCAG+GGG 0.744708 tig0018387:+16113 Msa1365800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTAAAAGTTTTCTTTT+TGG - tig0018387:15584-15603 None:intergenic 10.0%
!! CAAAAAAATAAAAATAAACA+TGG + tig0018387:16274-16293 Msa1365800:intron 10.0%
!!! TTATTGTGAATTTATTTTTT+TGG + tig0018387:16732-16751 Msa1365800:intron 10.0%
!!! TTAATTAAAAGTTTTCTTTT+TGG - tig0018387:15584-15603 None:intergenic 10.0%
!! CAAAAAAATAAAAATAAACA+TGG + tig0018387:16274-16293 Msa1365800:intron 10.0%
!!! TTATTGTGAATTTATTTTTT+TGG + tig0018387:16732-16751 Msa1365800:intron 10.0%
!! AAAAAACTTCATAAGTAAAT+AGG - tig0018387:16200-16219 None:intergenic 15.0%
!! TTCAATTTGACAAATTATAT+AGG + tig0018387:16226-16245 Msa1365800:intron 15.0%
!!! TATTACAAGTTGATTTTATA+CGG - tig0018387:16568-16587 None:intergenic 15.0%
!!! AAAACTTATTCTTTTTCAAT+GGG + tig0018387:16619-16638 Msa1365800:intron 15.0%
!! AAAAAACATATACAGAATAA+TGG - tig0018387:17061-17080 None:intergenic 15.0%
!! AAAAAACTTCATAAGTAAAT+AGG - tig0018387:16200-16219 None:intergenic 15.0%
!! TTCAATTTGACAAATTATAT+AGG + tig0018387:16226-16245 Msa1365800:intron 15.0%
!!! TATTACAAGTTGATTTTATA+CGG - tig0018387:16568-16587 None:intergenic 15.0%
!!! AAAACTTATTCTTTTTCAAT+GGG + tig0018387:16619-16638 Msa1365800:intron 15.0%
!! AAAAAACATATACAGAATAA+TGG - tig0018387:17061-17080 None:intergenic 15.0%
!!! TTAAAAGTTTTCTTTTTGGT+TGG - tig0018387:15580-15599 None:intergenic 20.0%
!! CTCTACTCAAAATTTATTAA+AGG - tig0018387:15640-15659 None:intergenic 20.0%
!! AAGTGAAGATTGTAAATTAA+TGG + tig0018387:15704-15723 Msa1365800:exon 20.0%
!! TATAAAGTGATTCAAATTTG+TGG + tig0018387:16029-16048 Msa1365800:intron 20.0%
!! TTCATAAGTAAATAGGAAAA+CGG - tig0018387:16193-16212 None:intergenic 20.0%
!! ATCACATGTAAAAAAAACAA+TGG + tig0018387:16368-16387 Msa1365800:intron 20.0%
!! TCACATGTAAAAAAAACAAT+GGG + tig0018387:16369-16388 Msa1365800:intron 20.0%
!! GCATATCTTGAAATATTTAA+TGG + tig0018387:16417-16436 Msa1365800:intron 20.0%
!! TATCTTGAAATATTTAATGG+AGG + tig0018387:16420-16439 Msa1365800:intron 20.0%
!! TAAAATCAACTTGTAATACA+AGG + tig0018387:16570-16589 Msa1365800:intron 20.0%
!!! CAAAACTTATTCTTTTTCAA+TGG + tig0018387:16618-16637 Msa1365800:intron 20.0%
!!! TTAAAAGTTTTCTTTTTGGT+TGG - tig0018387:15580-15599 None:intergenic 20.0%
!! CTCTACTCAAAATTTATTAA+AGG - tig0018387:15640-15659 None:intergenic 20.0%
!! AAGTGAAGATTGTAAATTAA+TGG + tig0018387:15704-15723 Msa1365800:exon 20.0%
!! TATAAAGTGATTCAAATTTG+TGG + tig0018387:16029-16048 Msa1365800:intron 20.0%
!! TTCATAAGTAAATAGGAAAA+CGG - tig0018387:16193-16212 None:intergenic 20.0%
!! ATCACATGTAAAAAAAACAA+TGG + tig0018387:16368-16387 Msa1365800:intron 20.0%
!! TCACATGTAAAAAAAACAAT+GGG + tig0018387:16369-16388 Msa1365800:intron 20.0%
!! GCATATCTTGAAATATTTAA+TGG + tig0018387:16417-16436 Msa1365800:intron 20.0%
!! TATCTTGAAATATTTAATGG+AGG + tig0018387:16420-16439 Msa1365800:intron 20.0%
!! TAAAATCAACTTGTAATACA+AGG + tig0018387:16570-16589 Msa1365800:intron 20.0%
!!! CAAAACTTATTCTTTTTCAA+TGG + tig0018387:16618-16637 Msa1365800:intron 20.0%
!!! GATTCAAATTTGTGGTTTTA+TGG + tig0018387:16037-16056 Msa1365800:intron 25.0%
! CACATGTAAAAAAAACAATG+GGG + tig0018387:16370-16389 Msa1365800:intron 25.0%
! TCAATAGCATAATTAAGTCA+AGG + tig0018387:16394-16413 Msa1365800:intron 25.0%
! CAATAGCATAATTAAGTCAA+GGG + tig0018387:16395-16414 Msa1365800:intron 25.0%
! AAAAGTTTAATCAACCATCA+TGG + tig0018387:16476-16495 Msa1365800:intron 25.0%
! GGGATTATTAATACATGTAA+AGG - tig0018387:16656-16675 None:intergenic 25.0%
! TAATGAGTGATAAACAATAG+AGG - tig0018387:16762-16781 None:intergenic 25.0%
! CATACTAATCATAAGTAGAA+TGG - tig0018387:16821-16840 None:intergenic 25.0%
! GAATTTCCAAACATGAAAAT+GGG - tig0018387:17365-17384 None:intergenic 25.0%
! TGAATTTCCAAACATGAAAA+TGG - tig0018387:17366-17385 None:intergenic 25.0%
!! TTTTCATGTTTGGAAATTCA+TGG + tig0018387:17366-17385 Msa1365800:three_prime_UTR 25.0%
! TTTCATGTTTGGAAATTCAT+GGG + tig0018387:17367-17386 Msa1365800:three_prime_UTR 25.0%
! TTCTTGAATGTAACATTGTT+TGG + tig0018387:17429-17448 Msa1365800:three_prime_UTR 25.0%
!!! GATTCAAATTTGTGGTTTTA+TGG + tig0018387:16037-16056 Msa1365800:intron 25.0%
! CACATGTAAAAAAAACAATG+GGG + tig0018387:16370-16389 Msa1365800:intron 25.0%
! TCAATAGCATAATTAAGTCA+AGG + tig0018387:16394-16413 Msa1365800:intron 25.0%
! CAATAGCATAATTAAGTCAA+GGG + tig0018387:16395-16414 Msa1365800:intron 25.0%
! AAAAGTTTAATCAACCATCA+TGG + tig0018387:16476-16495 Msa1365800:intron 25.0%
! GGGATTATTAATACATGTAA+AGG - tig0018387:16656-16675 None:intergenic 25.0%
! TAATGAGTGATAAACAATAG+AGG - tig0018387:16762-16781 None:intergenic 25.0%
! CATACTAATCATAAGTAGAA+TGG - tig0018387:16821-16840 None:intergenic 25.0%
! GAATTTCCAAACATGAAAAT+GGG - tig0018387:17365-17384 None:intergenic 25.0%
! TGAATTTCCAAACATGAAAA+TGG - tig0018387:17366-17385 None:intergenic 25.0%
!! TTTTCATGTTTGGAAATTCA+TGG + tig0018387:17366-17385 Msa1365800:three_prime_UTR 25.0%
! TTTCATGTTTGGAAATTCAT+GGG + tig0018387:17367-17386 Msa1365800:three_prime_UTR 25.0%
! TTCTTGAATGTAACATTGTT+TGG + tig0018387:17429-17448 Msa1365800:three_prime_UTR 25.0%
!!! AAAGTTTTCTTTTTGGTTGG+TGG - tig0018387:15577-15596 None:intergenic 30.0%
TAAATTAATGGAGACAGTGA+TGG + tig0018387:15716-15735 Msa1365800:exon 30.0%
ATAGTATTAGCCATAGATCA+TGG + tig0018387:15849-15868 Msa1365800:CDS 30.0%
! TCAAAAGCATGTTTACTGTT+TGG - tig0018387:15876-15895 None:intergenic 30.0%
! ACAGTAAACATGCTTTTGAT+TGG + tig0018387:15877-15896 Msa1365800:CDS 30.0%
!! CAGTAAACATGCTTTTGATT+GGG + tig0018387:15878-15897 Msa1365800:CDS 30.0%
ATGAGAAGTTAAGAAAGTGA+AGG - tig0018387:15972-15991 None:intergenic 30.0%
GAGGTCAAAGATACTAATTA+CGG + tig0018387:16439-16458 Msa1365800:intron 30.0%
GTTATCAATAAATGCTGCAA+GGG - tig0018387:16676-16695 None:intergenic 30.0%
AGTTATCAATAAATGCTGCA+AGG - tig0018387:16677-16696 None:intergenic 30.0%
! GCAGCATTTATTGATAACTT+TGG + tig0018387:16678-16697 Msa1365800:intron 30.0%
GATTAGTATGATGTGAAAAC+AGG + tig0018387:16831-16850 Msa1365800:intron 30.0%
TTCAATCCCTTTCTATATCT+CGG + tig0018387:17011-17030 Msa1365800:intron 30.0%
!! ATCAATGGTCTAATGGATTT+AGG + tig0018387:17265-17284 Msa1365800:exon 30.0%
! AATGCTTTTATGTAACCTTC+TGG + tig0018387:17480-17499 Msa1365800:three_prime_UTR 30.0%
!!! AAAGTTTTCTTTTTGGTTGG+TGG - tig0018387:15577-15596 None:intergenic 30.0%
TAAATTAATGGAGACAGTGA+TGG + tig0018387:15716-15735 Msa1365800:exon 30.0%
ATAGTATTAGCCATAGATCA+TGG + tig0018387:15849-15868 Msa1365800:CDS 30.0%
! TCAAAAGCATGTTTACTGTT+TGG - tig0018387:15876-15895 None:intergenic 30.0%
! ACAGTAAACATGCTTTTGAT+TGG + tig0018387:15877-15896 Msa1365800:CDS 30.0%
!! CAGTAAACATGCTTTTGATT+GGG + tig0018387:15878-15897 Msa1365800:CDS 30.0%
ATGAGAAGTTAAGAAAGTGA+AGG - tig0018387:15972-15991 None:intergenic 30.0%
GAGGTCAAAGATACTAATTA+CGG + tig0018387:16439-16458 Msa1365800:intron 30.0%
GTTATCAATAAATGCTGCAA+GGG - tig0018387:16676-16695 None:intergenic 30.0%
AGTTATCAATAAATGCTGCA+AGG - tig0018387:16677-16696 None:intergenic 30.0%
! GCAGCATTTATTGATAACTT+TGG + tig0018387:16678-16697 Msa1365800:intron 30.0%
GATTAGTATGATGTGAAAAC+AGG + tig0018387:16831-16850 Msa1365800:intron 30.0%
TTCAATCCCTTTCTATATCT+CGG + tig0018387:17011-17030 Msa1365800:intron 30.0%
!! ATCAATGGTCTAATGGATTT+AGG + tig0018387:17265-17284 Msa1365800:exon 30.0%
! AATGCTTTTATGTAACCTTC+TGG + tig0018387:17480-17499 Msa1365800:three_prime_UTR 30.0%
ACAATCTTCACTTCACAACT+TGG - tig0018387:15697-15716 None:intergenic 35.0%
GAGTCAAGTCATACACAATT+TGG - tig0018387:16111-16130 None:intergenic 35.0%
AATTGTGTATGACTTGACTC+AGG + tig0018387:16111-16130 Msa1365800:CDS 35.0%
ATTGTGTATGACTTGACTCA+GGG + tig0018387:16112-16131 Msa1365800:CDS 35.0%
GTCAAAGATACTAATTACGG+TGG + tig0018387:16442-16461 Msa1365800:intron 35.0%
! GATACTAATTACGGTGGATT+AGG + tig0018387:16448-16467 Msa1365800:intron 35.0%
!!! TTCTTTTTCAATGGGAGACT+TGG + tig0018387:16627-16646 Msa1365800:intron 35.0%
CTCATTACTACTCTATTTCC+TGG + tig0018387:16775-16794 Msa1365800:intron 35.0%
TACTCTATTTCCTGGCAAAT+TGG + tig0018387:16783-16802 Msa1365800:intron 35.0%
! TGCAGGAAAAGTAATTTGCA+AGG + tig0018387:16885-16904 Msa1365800:CDS 35.0%
GTATCTAACTTCGTATGTTG+TGG + tig0018387:17328-17347 Msa1365800:three_prime_UTR 35.0%
! TTTCGACCCATTTTCATGTT+TGG + tig0018387:17356-17375 Msa1365800:three_prime_UTR 35.0%
AAACAAACTACTATGCCAGA+AGG - tig0018387:17498-17517 None:intergenic 35.0%
ACAATCTTCACTTCACAACT+TGG - tig0018387:15697-15716 None:intergenic 35.0%
GAGTCAAGTCATACACAATT+TGG - tig0018387:16111-16130 None:intergenic 35.0%
AATTGTGTATGACTTGACTC+AGG + tig0018387:16111-16130 Msa1365800:CDS 35.0%
ATTGTGTATGACTTGACTCA+GGG + tig0018387:16112-16131 Msa1365800:CDS 35.0%
GTCAAAGATACTAATTACGG+TGG + tig0018387:16442-16461 Msa1365800:intron 35.0%
! GATACTAATTACGGTGGATT+AGG + tig0018387:16448-16467 Msa1365800:intron 35.0%
!!! TTCTTTTTCAATGGGAGACT+TGG + tig0018387:16627-16646 Msa1365800:intron 35.0%
CTCATTACTACTCTATTTCC+TGG + tig0018387:16775-16794 Msa1365800:intron 35.0%
TACTCTATTTCCTGGCAAAT+TGG + tig0018387:16783-16802 Msa1365800:intron 35.0%
! TGCAGGAAAAGTAATTTGCA+AGG + tig0018387:16885-16904 Msa1365800:CDS 35.0%
GTATCTAACTTCGTATGTTG+TGG + tig0018387:17328-17347 Msa1365800:three_prime_UTR 35.0%
! TTTCGACCCATTTTCATGTT+TGG + tig0018387:17356-17375 Msa1365800:three_prime_UTR 35.0%
AAACAAACTACTATGCCAGA+AGG - tig0018387:17498-17517 None:intergenic 35.0%
GAAACAGGAGAAAGAAGAAG+AGG + tig0018387:15819-15838 Msa1365800:CDS 40.0%
AGGAGAAAGAAGAAGAGGAA+GGG + tig0018387:15824-15843 Msa1365800:CDS 40.0%
ACTGTTTGGACCATGATCTA+TGG - tig0018387:15862-15881 None:intergenic 40.0%
AACCAGAAACAGCATGAACA+AGG - tig0018387:15941-15960 None:intergenic 40.0%
!! TTGTTCATGCTGTTTCTGGT+TGG + tig0018387:15940-15959 Msa1365800:intron 40.0%
TTGTGTATGACTTGACTCAG+GGG + tig0018387:16113-16132 Msa1365800:CDS 40.0%
!!! TGAGGCTTTTGAAGTTGCAA+TGG + tig0018387:16156-16175 Msa1365800:CDS 40.0%
CACAATTTGTGTCCCATTCA+CGG + tig0018387:16321-16340 Msa1365800:intron 40.0%
AAATGGACAACTCCGTGAAT+GGG - tig0018387:16336-16355 None:intergenic 40.0%
TAAATGGACAACTCCGTGAA+TGG - tig0018387:16337-16356 None:intergenic 40.0%
ATTCACGGAGTTGTCCATTT+AGG + tig0018387:16336-16355 Msa1365800:intron 40.0%
GTGATTGACTACCACCTAAA+TGG - tig0018387:16353-16372 None:intergenic 40.0%
GAACAACTTGTAAGCCATGA+TGG - tig0018387:16493-16512 None:intergenic 40.0%
GAATAGATTGCCAATTTGCC+AGG - tig0018387:16796-16815 None:intergenic 40.0%
AACAGGTGAAAACAGTAGCT+CGG + tig0018387:16848-16867 Msa1365800:intron 40.0%
! TAATTTGCAAGGAAGCAGAG+AGG + tig0018387:16896-16915 Msa1365800:CDS 40.0%
GAATGGCCGAGATATAGAAA+GGG - tig0018387:17020-17039 None:intergenic 40.0%
AGAATGGCCGAGATATAGAA+AGG - tig0018387:17021-17040 None:intergenic 40.0%
TAACTGCAGTGTGTAGAGAA+TGG - tig0018387:17037-17056 None:intergenic 40.0%
! TAGTAATGCACACCTTTTCC+AGG - tig0018387:17164-17183 None:intergenic 40.0%
CTTCTTTGATTGACAGATGC+TGG + tig0018387:17236-17255 Msa1365800:intron 40.0%
GTGATGCATCAATGGTCTAA+TGG + tig0018387:17258-17277 Msa1365800:CDS 40.0%
GAAACAGGAGAAAGAAGAAG+AGG + tig0018387:15819-15838 Msa1365800:CDS 40.0%
AGGAGAAAGAAGAAGAGGAA+GGG + tig0018387:15824-15843 Msa1365800:CDS 40.0%
ACTGTTTGGACCATGATCTA+TGG - tig0018387:15862-15881 None:intergenic 40.0%
AACCAGAAACAGCATGAACA+AGG - tig0018387:15941-15960 None:intergenic 40.0%
!! TTGTTCATGCTGTTTCTGGT+TGG + tig0018387:15940-15959 Msa1365800:intron 40.0%
TTGTGTATGACTTGACTCAG+GGG + tig0018387:16113-16132 Msa1365800:CDS 40.0%
!!! TGAGGCTTTTGAAGTTGCAA+TGG + tig0018387:16156-16175 Msa1365800:CDS 40.0%
CACAATTTGTGTCCCATTCA+CGG + tig0018387:16321-16340 Msa1365800:intron 40.0%
AAATGGACAACTCCGTGAAT+GGG - tig0018387:16336-16355 None:intergenic 40.0%
TAAATGGACAACTCCGTGAA+TGG - tig0018387:16337-16356 None:intergenic 40.0%
ATTCACGGAGTTGTCCATTT+AGG + tig0018387:16336-16355 Msa1365800:intron 40.0%
GTGATTGACTACCACCTAAA+TGG - tig0018387:16353-16372 None:intergenic 40.0%
GAACAACTTGTAAGCCATGA+TGG - tig0018387:16493-16512 None:intergenic 40.0%
GAATAGATTGCCAATTTGCC+AGG - tig0018387:16796-16815 None:intergenic 40.0%
AACAGGTGAAAACAGTAGCT+CGG + tig0018387:16848-16867 Msa1365800:intron 40.0%
! TAATTTGCAAGGAAGCAGAG+AGG + tig0018387:16896-16915 Msa1365800:CDS 40.0%
GAATGGCCGAGATATAGAAA+GGG - tig0018387:17020-17039 None:intergenic 40.0%
AGAATGGCCGAGATATAGAA+AGG - tig0018387:17021-17040 None:intergenic 40.0%
TAACTGCAGTGTGTAGAGAA+TGG - tig0018387:17037-17056 None:intergenic 40.0%
! TAGTAATGCACACCTTTTCC+AGG - tig0018387:17164-17183 None:intergenic 40.0%
CTTCTTTGATTGACAGATGC+TGG + tig0018387:17236-17255 Msa1365800:intron 40.0%
GTGATGCATCAATGGTCTAA+TGG + tig0018387:17258-17277 Msa1365800:CDS 40.0%
GGCACTATTGGTATCAGTGA+AGG - tig0018387:15780-15799 None:intergenic 45.0%
CAGGAGAAAGAAGAAGAGGA+AGG + tig0018387:15823-15842 Msa1365800:CDS 45.0%
AACAGCATGAACAAGGTGGA+TGG - tig0018387:15934-15953 None:intergenic 45.0%
CAGAAACAGCATGAACAAGG+TGG - tig0018387:15938-15957 None:intergenic 45.0%
!! CACCTTGTTCATGCTGTTTC+TGG + tig0018387:15936-15955 Msa1365800:CDS 45.0%
!! TCATGCTGTTTCTGGTTGGT+TGG + tig0018387:15944-15963 Msa1365800:intron 45.0%
GATGGAGAAATTAGCGGTTG+AGG + tig0018387:16138-16157 Msa1365800:CDS 45.0%
CGTGAATGGGACACAAATTG+TGG - tig0018387:16323-16342 None:intergenic 45.0%
! TAAACCTGCAGCTGTGGTTT+TGG + tig0018387:16921-16940 Msa1365800:CDS 45.0%
! AAACCTGCAGCTGTGGTTTT+GGG + tig0018387:16922-16941 Msa1365800:CDS 45.0%
TTGAAACAAGCTTCTGCCTC+TGG - tig0018387:16950-16969 None:intergenic 45.0%
! GAGGCAGAAGCTTGTTTCAA+AGG + tig0018387:16950-16969 Msa1365800:CDS 45.0%
TCCTTCTTCAGTGTGCTACA+AGG + tig0018387:17083-17102 Msa1365800:intron 45.0%
TCCTTGTAGCACACTGAAGA+AGG - tig0018387:17087-17106 None:intergenic 45.0%
TTTCCAGGAACGATCACAAC+AGG - tig0018387:17149-17168 None:intergenic 45.0%
GTTGTGATCGTTCCTGGAAA+AGG + tig0018387:17149-17168 Msa1365800:CDS 45.0%
! AGATGCTGGTGATGCATCAA+TGG + tig0018387:17250-17269 Msa1365800:intron 45.0%
GAGAAACAACACAGCGCAAT+AGG - tig0018387:17569-17588 None:intergenic 45.0%
GGCACTATTGGTATCAGTGA+AGG - tig0018387:15780-15799 None:intergenic 45.0%
CAGGAGAAAGAAGAAGAGGA+AGG + tig0018387:15823-15842 Msa1365800:CDS 45.0%
AACAGCATGAACAAGGTGGA+TGG - tig0018387:15934-15953 None:intergenic 45.0%
CAGAAACAGCATGAACAAGG+TGG - tig0018387:15938-15957 None:intergenic 45.0%
!! CACCTTGTTCATGCTGTTTC+TGG + tig0018387:15936-15955 Msa1365800:CDS 45.0%
!! TCATGCTGTTTCTGGTTGGT+TGG + tig0018387:15944-15963 Msa1365800:intron 45.0%
GATGGAGAAATTAGCGGTTG+AGG + tig0018387:16138-16157 Msa1365800:CDS 45.0%
CGTGAATGGGACACAAATTG+TGG - tig0018387:16323-16342 None:intergenic 45.0%
! TAAACCTGCAGCTGTGGTTT+TGG + tig0018387:16921-16940 Msa1365800:CDS 45.0%
! AAACCTGCAGCTGTGGTTTT+GGG + tig0018387:16922-16941 Msa1365800:CDS 45.0%
TTGAAACAAGCTTCTGCCTC+TGG - tig0018387:16950-16969 None:intergenic 45.0%
! GAGGCAGAAGCTTGTTTCAA+AGG + tig0018387:16950-16969 Msa1365800:CDS 45.0%
TCCTTCTTCAGTGTGCTACA+AGG + tig0018387:17083-17102 Msa1365800:intron 45.0%
TCCTTGTAGCACACTGAAGA+AGG - tig0018387:17087-17106 None:intergenic 45.0%
TTTCCAGGAACGATCACAAC+AGG - tig0018387:17149-17168 None:intergenic 45.0%
GTTGTGATCGTTCCTGGAAA+AGG + tig0018387:17149-17168 Msa1365800:CDS 45.0%
! AGATGCTGGTGATGCATCAA+TGG + tig0018387:17250-17269 Msa1365800:intron 45.0%
GAGAAACAACACAGCGCAAT+AGG - tig0018387:17569-17588 None:intergenic 45.0%
GGGGCTGATGGAGAAATTAG+CGG + tig0018387:16132-16151 Msa1365800:CDS 50.0%
CACGGAGTTGTCCATTTAGG+TGG + tig0018387:16339-16358 Msa1365800:intron 50.0%
ACAGTAGCTCGGATAGTGCA+AGG + tig0018387:16859-16878 Msa1365800:CDS 50.0%
GAGGATTAAACCTGCAGCTG+TGG + tig0018387:16915-16934 Msa1365800:CDS 50.0%
!! AACCTGCAGCTGTGGTTTTG+GGG + tig0018387:16923-16942 Msa1365800:CDS 50.0%
GTGAGCGTGTGTGTGTGTAT+GGG + tig0018387:16972-16991 Msa1365800:intron 50.0%
! AGTGTGCTACAAGGAAGCGT+CGG + tig0018387:17092-17111 Msa1365800:intron 50.0%
!! CAACAGGTGCTGCTTTACAG+TGG - tig0018387:17133-17152 None:intergenic 50.0%
GACTGAGCATGAGAACCGAA+CGG - tig0018387:15537-15556 None:intergenic 50.0%
GGGGCTGATGGAGAAATTAG+CGG + tig0018387:16132-16151 Msa1365800:CDS 50.0%
CACGGAGTTGTCCATTTAGG+TGG + tig0018387:16339-16358 Msa1365800:intron 50.0%
ACAGTAGCTCGGATAGTGCA+AGG + tig0018387:16859-16878 Msa1365800:CDS 50.0%
GAGGATTAAACCTGCAGCTG+TGG + tig0018387:16915-16934 Msa1365800:CDS 50.0%
!! AACCTGCAGCTGTGGTTTTG+GGG + tig0018387:16923-16942 Msa1365800:CDS 50.0%
GTGAGCGTGTGTGTGTGTAT+GGG + tig0018387:16972-16991 Msa1365800:intron 50.0%
! AGTGTGCTACAAGGAAGCGT+CGG + tig0018387:17092-17111 Msa1365800:intron 50.0%
!! CAACAGGTGCTGCTTTACAG+TGG - tig0018387:17133-17152 None:intergenic 50.0%
! GGTGGCACGCTGTCTTTTCT+AGG - tig0018387:15559-15578 None:intergenic 55.0%
! AGCTCTGGCTCAGGCACTAT+TGG - tig0018387:15792-15811 None:intergenic 55.0%
CCTGTTTCCCTCTCAAGCTC+TGG - tig0018387:15807-15826 None:intergenic 55.0%
CCAGAGCTTGAGAGGGAAAC+AGG + tig0018387:15804-15823 Msa1365800:CDS 55.0%
TGACTTGACTCAGGGGCTGA+TGG + tig0018387:16120-16139 Msa1365800:CDS 55.0%
CGGATAGTGCAAGGTGATGC+AGG + tig0018387:16868-16887 Msa1365800:CDS 55.0%
GGTGAGCGTGTGTGTGTGTA+TGG + tig0018387:16971-16990 Msa1365800:intron 55.0%
GCACCTGTTGTGATCGTTCC+TGG + tig0018387:17143-17162 Msa1365800:CDS 55.0%
! GGTGGCACGCTGTCTTTTCT+AGG - tig0018387:15559-15578 None:intergenic 55.0%
! AGCTCTGGCTCAGGCACTAT+TGG - tig0018387:15792-15811 None:intergenic 55.0%
CCTGTTTCCCTCTCAAGCTC+TGG - tig0018387:15807-15826 None:intergenic 55.0%
CCAGAGCTTGAGAGGGAAAC+AGG + tig0018387:15804-15823 Msa1365800:CDS 55.0%
TGACTTGACTCAGGGGCTGA+TGG + tig0018387:16120-16139 Msa1365800:CDS 55.0%
CGGATAGTGCAAGGTGATGC+AGG + tig0018387:16868-16887 Msa1365800:CDS 55.0%
GGTGAGCGTGTGTGTGTGTA+TGG + tig0018387:16971-16990 Msa1365800:intron 55.0%
GCACCTGTTGTGATCGTTCC+TGG + tig0018387:17143-17162 Msa1365800:CDS 55.0%
TGCCTGAGCCAGAGCTTGAG+AGG + tig0018387:15796-15815 Msa1365800:CDS 60.0%
GCCTGAGCCAGAGCTTGAGA+GGG + tig0018387:15797-15816 Msa1365800:CDS 60.0%
! TCCCTCTCAAGCTCTGGCTC+AGG - tig0018387:15801-15820 None:intergenic 60.0%
GTCCCCAAAACCACAGCTGC+AGG - tig0018387:16928-16947 None:intergenic 60.0%
!!! GCTGTGGTTTTGGGGACCAG+AGG + tig0018387:16931-16950 Msa1365800:CDS 60.0%
TGCCTGAGCCAGAGCTTGAG+AGG + tig0018387:15796-15815 Msa1365800:CDS 60.0%
GCCTGAGCCAGAGCTTGAGA+GGG + tig0018387:15797-15816 Msa1365800:CDS 60.0%
! TCCCTCTCAAGCTCTGGCTC+AGG - tig0018387:15801-15820 None:intergenic 60.0%
GTCCCCAAAACCACAGCTGC+AGG - tig0018387:16928-16947 None:intergenic 60.0%
!!! GCTGTGGTTTTGGGGACCAG+AGG + tig0018387:16931-16950 Msa1365800:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0018387 gene 15537 17623 15537 ID=Msa1365800;Name=Msa1365800
tig0018387 mRNA 15537 17623 15537 ID=Msa1365800-mRNA-1;Parent=Msa1365800;Name=Msa1365800-mRNA-1;_AED=0.02;_eAED=0.02;_QI=186|1|1|1|1|1|5|346|178
tig0018387 exon 15537 15957 15537 ID=Msa1365800-mRNA-1:exon:14803;Parent=Msa1365800-mRNA-1
tig0018387 exon 16098 16177 16098 ID=Msa1365800-mRNA-1:exon:14804;Parent=Msa1365800-mRNA-1
tig0018387 exon 16853 16971 16853 ID=Msa1365800-mRNA-1:exon:14805;Parent=Msa1365800-mRNA-1
tig0018387 exon 17094 17170 17094 ID=Msa1365800-mRNA-1:exon:14806;Parent=Msa1365800-mRNA-1
tig0018387 exon 17252 17623 17252 ID=Msa1365800-mRNA-1:exon:14807;Parent=Msa1365800-mRNA-1
tig0018387 five_prime_UTR 15537 15722 15537 ID=Msa1365800-mRNA-1:five_prime_utr;Parent=Msa1365800-mRNA-1
tig0018387 CDS 15723 15957 15723 ID=Msa1365800-mRNA-1:cds;Parent=Msa1365800-mRNA-1
tig0018387 CDS 16098 16177 16098 ID=Msa1365800-mRNA-1:cds;Parent=Msa1365800-mRNA-1
tig0018387 CDS 16853 16971 16853 ID=Msa1365800-mRNA-1:cds;Parent=Msa1365800-mRNA-1
tig0018387 CDS 17094 17170 17094 ID=Msa1365800-mRNA-1:cds;Parent=Msa1365800-mRNA-1
tig0018387 CDS 17252 17277 17252 ID=Msa1365800-mRNA-1:cds;Parent=Msa1365800-mRNA-1
tig0018387 three_prime_UTR 17278 17623 17278 ID=Msa1365800-mRNA-1:three_prime_utr;Parent=Msa1365800-mRNA-1
Gene Sequence

>Msa1365800

ATGGAGACAGTGATGGAAGATGTAGAAGAATACAACTACAGAGAAGTGAAGCTTCCTTCACTGATACCAATAGTGCCTGAGCCAGAGCTTGAGAGGGAAACAGGAGAAAGAAGAAGAGGAAGGGATATAGTATTAGCCATAGATCATGGTCCAAACAGTAAACATGCTTTTGATTGGGCTCTTATTCATCTATGCAGACTTGCTGATACCATCCACCTTGTTCATGCTGTTTCTGATGTGAAGAACCAAATTGTGTATGACTTGACTCAGGGGCTGATGGAGAAATTAGCGGTTGAGGCTTTTGAAGTTGCAATGGTGAAAACAGTAGCTCGGATAGTGCAAGGTGATGCAGGAAAAGTAATTTGCAAGGAAGCAGAGAGGATTAAACCTGCAGCTGTGGTTTTGGGGACCAGAGGCAGAAGCTTGTTTCAAAGTGTGCTACAAGGAAGCGTCGGTGAGTATTGCTTTCACCACTGTAAAGCAGCACCTGTTGTGATCGTTCCTGGAAAAGATGCTGGTGATGCATCAATGGTCTAA

Protein sequence

>Msa1365800

METVMEDVEEYNYREVKLPSLIPIVPEPELERETGERRRGRDIVLAIDHGPNSKHAFDWALIHLCRLADTIHLVHAVSDVKNQIVYDLTQGLMEKLAVEAFEVAMVKTVARIVQGDAGKVICKEAERIKPAAVVLGTRGRSLFQSVLQGSVGEYCFHHCKAAPVVIVPGKDAGDASMV*