AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0264780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0264780 MtrunA17_Chr2g0329041 91.908 346 14 3 1 346 1 332 0.0 619
Msa0264780 MtrunA17_Chr2g0329071 97.619 210 5 0 346 555 272 481 1.57e-145 428
Msa0264780 MtrunA17_Chr4g0033031 69.444 216 59 5 346 555 274 488 5.84e-93 293
Msa0264780 MtrunA17_Chr4g0032951 44.473 389 141 16 1 347 1 356 2.62e-85 272
Msa0264780 MtrunA17_Chr1g0174271 37.008 254 123 10 115 346 60 298 3.60e-27 113
Msa0264780 MtrunA17_Chr3g0087771 29.330 358 182 16 5 346 20 322 2.50e-13 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0264780 AT4G12070.1 53.425 219 79 4 346 552 272 479 7.75e-61 209
Msa0264780 AT2G42280.2 27.557 352 157 14 11 346 10 279 1.03e-16 81.6
Msa0264780 AT2G42280.1 26.705 352 160 12 11 346 10 279 1.27e-16 82.0
Msa0264780 AT2G42280.3 27.273 352 158 13 11 346 10 279 1.55e-16 82.0

Find 112 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTACATTGTCCTTAATTT+TGG 0.127043 2_2:-64796867 None:intergenic
GCCATTTCAGATGAAGTATT+TGG 0.195078 2_2:-64799293 None:intergenic
TTCCTTGAAGTAGAAAATTT+TGG 0.197445 2_2:-64798885 None:intergenic
CGCTCTGTTTCTGGACTTGA+TGG 0.209227 2_2:-64797695 None:intergenic
AACAGACACTTGTAGATTAT+TGG 0.210823 2_2:+64799851 Msa0264780:CDS
TCTCAAATTAACATTGAAAA+TGG 0.226358 2_2:+64798130 Msa0264780:CDS
TTGTTCGAGCAGTTCGTTTA+TGG 0.226809 2_2:+64799486 Msa0264780:CDS
TTCTCCTCCATGTCTTCCTT+TGG 0.249282 2_2:+64800000 Msa0264780:CDS
CCAAATCAGAATGTTTCTTC+TGG 0.278715 2_2:+64797998 Msa0264780:CDS
TCAAGGTTTATTAACAGTTT+TGG 0.288729 2_2:+64797725 Msa0264780:CDS
AATGTACCTGCTACACGTTC+AGG 0.296544 2_2:+64799804 Msa0264780:CDS
TCAGTTTGTTTCCAAAATTA+AGG 0.301115 2_2:+64796856 Msa0264780:five_prime_UTR
GGACTTGAGATGGGAGAAAA+AGG 0.309705 2_2:-64796809 None:intergenic
TTGCCATCTGAAGTTCAAAT+TGG 0.317258 2_2:+64800095 Msa0264780:CDS
TAAATCTTGATTCACAGATT+TGG 0.317726 2_2:-64796905 None:intergenic
TCTCCTCCATGTCTTCCTTT+GGG 0.323310 2_2:+64800001 Msa0264780:CDS
CACCCACAAGTAAATTCTTC+AGG 0.335781 2_2:+64797590 Msa0264780:CDS
CCAGAAGAAACATTCTGATT+TGG 0.339425 2_2:-64797998 None:intergenic
ATGGTTGATTAGAATGAAAC+AGG 0.344190 2_2:+64799227 Msa0264780:intron
AATGAAGAAAATGAAGCTTT+TGG 0.348594 2_2:+64798987 Msa0264780:CDS
ATTTCTCTCTCTCTAGCAAC+TGG 0.355297 2_2:+64800249 Msa0264780:CDS
ATGAGAGGAATGGGAACTTT+AGG 0.362085 2_2:+64798837 Msa0264780:CDS
AGGAAGACATGGAGGAGAAT+TGG 0.368027 2_2:-64799996 None:intergenic
GCCAAATACTTCATCTGAAA+TGG 0.370699 2_2:+64799292 Msa0264780:CDS
AATGTTTCTTCTGGTTTAGA+TGG 0.373647 2_2:+64798007 Msa0264780:CDS
AGAAAGAAAGTTTAAAGTAA+TGG 0.384370 2_2:-64797021 None:intergenic
AGGACATTCTAATTCTCCTT+TGG 0.389735 2_2:+64799253 Msa0264780:CDS
AATCAATCAAACTATTCATC+AGG 0.391137 2_2:+64798915 Msa0264780:CDS
AAAGCTTTGGTAGAAAACTA+TGG 0.391199 2_2:+64797544 Msa0264780:exon
TAACGAATATGTGGATTATC+AGG 0.397601 2_2:+64799022 Msa0264780:CDS
TACAAAGAACAACAAAATAA+TGG 0.399644 2_2:-64800400 None:intergenic
AACTCTGTTCCTTCTTCTCA+TGG 0.404649 2_2:+64797944 Msa0264780:CDS
TATGAGTTTCATTTGAAAAC+CGG 0.409910 2_2:-64800118 None:intergenic
TCGGTTGGATCAGAAGCTTC+TGG 0.416167 2_2:-64800155 None:intergenic
TGAAACCTCGCTAGTGATAT+CGG 0.425137 2_2:-64800174 None:intergenic
TGGATTATCAGGTTGATACT+TGG 0.436048 2_2:+64799033 Msa0264780:CDS
ACATAGAGGAACACATAAAC+AGG 0.436219 2_2:+64797109 Msa0264780:five_prime_UTR
ATAGAAAGCTCTCCTCCAAC+TGG 0.440635 2_2:-64799515 None:intergenic
AAAGAAGAAGATTCAAAACT+TGG 0.442147 2_2:+64799551 Msa0264780:CDS
TTCATCTGAAATGGCAGCTA+TGG 0.443352 2_2:+64799301 Msa0264780:CDS
CCATGGATGGTATCTTCAAC+AGG 0.458400 2_2:+64799906 Msa0264780:CDS
TATGTTAGTATGAGAGGAAT+GGG 0.466243 2_2:+64798828 Msa0264780:CDS
TCAGAAGCTTCTGGTGGCAA+TGG 0.477271 2_2:-64800146 None:intergenic
ATCTTGATTCACAGATTTGG+TGG 0.478032 2_2:-64796902 None:intergenic
GACCTCTTCAGTACGACTAA+TGG 0.480305 2_2:-64799579 None:intergenic
CATCTGAAGTTCAAATTGGC+CGG 0.481830 2_2:+64800099 Msa0264780:CDS
GGCAAAGGCTGCAGCACAGA+AGG 0.489845 2_2:-64800077 None:intergenic
AACCTGAAGAATTTACTTGT+GGG 0.489854 2_2:-64797592 None:intergenic
CGTTTATGGTATGCTCCAGT+TGG 0.489922 2_2:+64799500 Msa0264780:CDS
TTTCCACCATGATTCTTCAC+TGG 0.490723 2_2:-64798061 None:intergenic
GTCTGTGCAAGGATAGCTTC+TGG 0.498058 2_2:-64799962 None:intergenic
CAGAAGCTTCTGGTGGCAAT+GGG 0.506734 2_2:-64800145 None:intergenic
ACAACAACAAGATCAGGGTT+TGG 0.506743 2_2:+64797847 Msa0264780:CDS
TTATGGTATGCTCCAGTTGG+AGG 0.512618 2_2:+64799503 Msa0264780:CDS
AACAGTGAAAGAAGAAGAAG+AGG 0.518044 2_2:+64797793 Msa0264780:CDS
CTTCCTTTGGGACCGATCGT+TGG 0.519217 2_2:+64800013 Msa0264780:CDS
CGGCCAATTTGAACTTCAGA+TGG 0.521290 2_2:-64800098 None:intergenic
GCAGGTTATGTTAGTATGAG+AGG 0.524043 2_2:+64798822 Msa0264780:intron
ATTTGAGAAAATAATCCAGC+TGG 0.524222 2_2:-64798115 None:intergenic
TGTTGTTGAGGTTTGAGTGG+TGG 0.538426 2_2:-64797077 None:intergenic
ATGTACCTGCTACACGTTCA+GGG 0.538477 2_2:+64799805 Msa0264780:CDS
GCATTTGATTTGTAGAACAA+TGG 0.540004 2_2:+64800352 Msa0264780:intron
CGCCATTAGTCGTACTGAAG+AGG 0.541414 2_2:+64799577 Msa0264780:CDS
ACATTCTGATTTGGCAAAGG+TGG 0.545087 2_2:-64797989 None:intergenic
TTGATTCACAGATTTGGTGG+TGG 0.548258 2_2:-64796899 None:intergenic
ACCTCGCTAGTGATATCGGT+TGG 0.551736 2_2:-64800170 None:intergenic
CTTAGCCCTGAACGTGTAGC+AGG 0.552589 2_2:-64799810 None:intergenic
GAAACATTCTGATTTGGCAA+AGG 0.556566 2_2:-64797992 None:intergenic
TTATGTTAGTATGAGAGGAA+TGG 0.558938 2_2:+64798827 Msa0264780:CDS
AAGTCATGGTAACGAATATG+TGG 0.563078 2_2:+64799013 Msa0264780:CDS
AACTCTGGTGTGTCTGTGCA+AGG 0.563105 2_2:-64799973 None:intergenic
CAAGGATAGCTTCTGGCTCA+AGG 0.563411 2_2:-64799955 None:intergenic
GTGGTTCTTTGTGCAGCCAA+TGG 0.563637 2_2:-64796947 None:intergenic
AGACATAGTAGTTCACCAGC+TGG 0.569208 2_2:+64798100 Msa0264780:CDS
TTGCAGCCAGTGAAGAATCA+TGG 0.569699 2_2:+64798055 Msa0264780:CDS
ATGTCAACAATAGCTGAAGT+TGG 0.572331 2_2:+64798942 Msa0264780:CDS
ATGGAGGAGAATTGGAACTC+TGG 0.573386 2_2:-64799988 None:intergenic
GAAATCATGAAATCTGAATG+AGG 0.576150 2_2:-64800231 None:intergenic
CCTGTTGAAGATACCATCCA+TGG 0.578338 2_2:-64799906 None:intergenic
ATCAATCAAACTATTCATCA+GGG 0.580340 2_2:+64798916 Msa0264780:CDS
TGACACGTGAGGACTTGAGA+TGG 0.582199 2_2:-64796819 None:intergenic
AAACCTGAAGAATTTACTTG+TGG 0.586193 2_2:-64797593 None:intergenic
GACACGTGAGGACTTGAGAT+GGG 0.591861 2_2:-64796818 None:intergenic
ATAGCTGAAGTTGGTGACAA+AGG 0.592602 2_2:+64798951 Msa0264780:CDS
TGTTGTTGTTGAGGTTTGAG+TGG 0.595008 2_2:-64797080 None:intergenic
CAACAACAACAATAACATAG+AGG 0.595502 2_2:+64797095 Msa0264780:five_prime_UTR
CGTTGGTTAATTCAAGCGGT+GGG 0.598754 2_2:+64800030 Msa0264780:CDS
TCGTTGGTTAATTCAAGCGG+TGG 0.599562 2_2:+64800029 Msa0264780:CDS
TAAATTCTTCAGGTTTAACA+AGG 0.602353 2_2:+64797600 Msa0264780:CDS
ATTTGAACTTCAGATGGCAA+AGG 0.607015 2_2:-64800092 None:intergenic
TTCAATCAACAATGAACATG+TGG 0.608573 2_2:+64797871 Msa0264780:CDS
AGGCTTGAGAGAGATACAGC+TGG 0.610095 2_2:+64800203 Msa0264780:CDS
GGATTATCAGGTTGATACTT+GGG 0.610172 2_2:+64799034 Msa0264780:CDS
GATTAGAATGAAACAGGAGG+AGG 0.610884 2_2:+64799233 Msa0264780:intron
ATCGGTCCCAAAGGAAGACA+TGG 0.611774 2_2:-64800007 None:intergenic
CGATCGTTGGTTAATTCAAG+CGG 0.619505 2_2:+64800026 Msa0264780:CDS
TAACCAACGATCGGTCCCAA+AGG 0.619719 2_2:-64800016 None:intergenic
ATGATGTCTGAAAATGTTGG+TGG 0.620048 2_2:+64799068 Msa0264780:CDS
ATACTCAATTGATGAGCCAA+AGG 0.626112 2_2:-64799269 None:intergenic
CGCTTGAATTAACCAACGAT+CGG 0.631713 2_2:-64800025 None:intergenic
TTTCTCTCTCTCTAGCAACT+GGG 0.634700 2_2:+64800250 Msa0264780:CDS
CTAGCGAGGTTTCACAATCG+AGG 0.649633 2_2:+64800183 Msa0264780:CDS
ATGTTGTTGAAATATGAACT+TGG 0.650570 2_2:-64797635 None:intergenic
ACAAACTGAGTGTAAGATGA+GGG 0.663005 2_2:-64796842 None:intergenic
GAAATGATGTCTGAAAATGT+TGG 0.668717 2_2:+64799065 Msa0264780:CDS
TAAGATGAGGGTGACACGTG+AGG 0.669684 2_2:-64796830 None:intergenic
GTTGATTAGAATGAAACAGG+AGG 0.674543 2_2:+64799230 Msa0264780:intron
TCCAACCGATATCACTAGCG+AGG 0.687705 2_2:+64800169 Msa0264780:CDS
GTTGGATCAGAAGCTTCTGG+TGG 0.702542 2_2:-64800152 None:intergenic
CAGCCAGTGAAGAATCATGG+TGG 0.713307 2_2:+64798058 Msa0264780:CDS
GGTCCCAAAGGAAGACATGG+AGG 0.715574 2_2:-64800004 None:intergenic
AACAAACTGAGTGTAAGATG+AGG 0.742880 2_2:-64796843 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTAGTTATTACTTATT+AGG + chr2_2:64798724-64798743 Msa0264780:intron 10.0%
!! TTAAAGAAATAAAATAGTTT+GGG - chr2_2:64798763-64798782 None:intergenic 10.0%
!!! ATAATTTTATTGTAATATAC+AGG + chr2_2:64799746-64799765 Msa0264780:intron 10.0%
!!! TAATTTTATTGTAATATACA+GGG + chr2_2:64799747-64799766 Msa0264780:intron 10.0%
!!! ATGGATTATTTTATTTTACA+GGG - chr2_2:64797005-64797024 None:intergenic 15.0%
!!! AATGGATTATTTTATTTTAC+AGG - chr2_2:64797006-64797025 None:intergenic 15.0%
!!! TATTTTTTTCTCTTTAAAGT+AGG - chr2_2:64798521-64798540 None:intergenic 15.0%
!!! TTCAAATTTAACATTTTTCT+AGG - chr2_2:64798551-64798570 None:intergenic 15.0%
!! TATATATTAAAGATCTCTTT+AGG + chr2_2:64798604-64798623 Msa0264780:intron 15.0%
!! ATATATTAAAGATCTCTTTA+GGG + chr2_2:64798605-64798624 Msa0264780:intron 15.0%
!!! TTTTAATATTTGCTATTATG+TGG + chr2_2:64798639-64798658 Msa0264780:intron 15.0%
!! TAAAGAAATAAAATAGTTTG+GGG - chr2_2:64798762-64798781 None:intergenic 15.0%
!! GTTAAAGAAATAAAATAGTT+TGG - chr2_2:64798764-64798783 None:intergenic 15.0%
!!! NNNNNNNNACGAATTTTCAT+CGG - chr2_2:64799356-64799375 None:intergenic 15.0%
!! TATAATACATATAGTTAAAG+AGG + chr2_2:64799696-64799715 Msa0264780:intron 15.0%
!!! AAATAGTATTTTATTGTGTG+TGG - chr2_2:64796969-64796988 None:intergenic 20.0%
!!! AGAAAGAAAGTTTAAAGTAA+TGG - chr2_2:64797024-64797043 None:intergenic 20.0%
!!! TTTTAGCTGTATATTATTGT+TGG - chr2_2:64797051-64797070 None:intergenic 20.0%
!!! CAGCTGAATAATTTTTTTTT+TGG - chr2_2:64797211-64797230 None:intergenic 20.0%
!! AACAAAAAATGATATTGAGA+AGG - chr2_2:64797276-64797295 None:intergenic 20.0%
!! AGATGAAATTCATTTATTGT+TGG - chr2_2:64797434-64797453 None:intergenic 20.0%
!! TACATATAGATCTGAAAAAA+GGG + chr2_2:64797453-64797472 Msa0264780:intron 20.0%
!! TCTCAAATTAACATTGAAAA+TGG + chr2_2:64798130-64798149 Msa0264780:CDS 20.0%
!! AAATAAAAATCTTGAAACAC+TGG - chr2_2:64798271-64798290 None:intergenic 20.0%
!! TGAAGAAAATGAATTGTAAA+AGG + chr2_2:64798391-64798410 Msa0264780:intron 20.0%
!!! AATTTGAAAATTTTCTTGTC+AGG + chr2_2:64798563-64798582 Msa0264780:intron 20.0%
!!! ATTTGAAAATTTTCTTGTCA+GGG + chr2_2:64798564-64798583 Msa0264780:intron 20.0%
!! NNNNNNNATGGAATAGACAT+AGG + chr2_2:64799461-64799480 Msa0264780:intron 20.0%
!! TACAAAGAACAACAAAATAA+TGG - chr2_2:64800403-64800422 None:intergenic 20.0%
!! TCAGTTTGTTTCCAAAATTA+AGG + chr2_2:64796856-64796875 Msa0264780:five_prime_UTR 25.0%
!! TACTACATTGTCCTTAATTT+TGG - chr2_2:64796870-64796889 None:intergenic 25.0%
! TAAATCTTGATTCACAGATT+TGG - chr2_2:64796908-64796927 None:intergenic 25.0%
! CTACATATAGATCTGAAAAA+AGG + chr2_2:64797452-64797471 Msa0264780:intron 25.0%
! AGAAGTGAAAAAAAAAGCTT+TGG + chr2_2:64797531-64797550 Msa0264780:five_prime_UTR 25.0%
!! TAAATTCTTCAGGTTTAACA+AGG + chr2_2:64797600-64797619 Msa0264780:CDS 25.0%
! ATGTTGTTGAAATATGAACT+TGG - chr2_2:64797638-64797657 None:intergenic 25.0%
!! TCAAGGTTTATTAACAGTTT+TGG + chr2_2:64797725-64797744 Msa0264780:CDS 25.0%
!!! TTTAGATGGAAGTTTTTCAA+TGG + chr2_2:64798021-64798040 Msa0264780:CDS 25.0%
!!! TTAGATGGAAGTTTTTCAAT+GGG + chr2_2:64798022-64798041 Msa0264780:CDS 25.0%
! TGTGAGTAAAATTTCAGATT+TGG - chr2_2:64798243-64798262 None:intergenic 25.0%
! TCTAATAAAATCCACCATTT+CGG - chr2_2:64798343-64798362 None:intergenic 25.0%
!! ATGAATTGTAAAAGGTTTTC+TGG + chr2_2:64798399-64798418 Msa0264780:intron 25.0%
!! TTTGAAAATTTTCTTGTCAG+GGG + chr2_2:64798565-64798584 Msa0264780:intron 25.0%
! TGAAAAAAAAAAACCCTAGT+GGG + chr2_2:64798701-64798720 Msa0264780:intron 25.0%
! AATAACTAATATTCCCACTA+GGG - chr2_2:64798717-64798736 None:intergenic 25.0%
! TAATAACTAATATTCCCACT+AGG - chr2_2:64798718-64798737 None:intergenic 25.0%
! TGATGTTATGCAAGTTTAAT+TGG + chr2_2:64798800-64798819 Msa0264780:intron 25.0%
!! AACCAAAATTTTCTACTTCA+AGG + chr2_2:64798883-64798902 Msa0264780:CDS 25.0%
!! TTCCTTGAAGTAGAAAATTT+TGG - chr2_2:64798888-64798907 None:intergenic 25.0%
! AATCAATCAAACTATTCATC+AGG + chr2_2:64798915-64798934 Msa0264780:CDS 25.0%
! ATCAATCAAACTATTCATCA+GGG + chr2_2:64798916-64798935 Msa0264780:CDS 25.0%
!! AATGAAGAAAATGAAGCTTT+TGG + chr2_2:64798987-64799006 Msa0264780:CDS 25.0%
!! GATTCAAAACAACAATTTTC+TGG + chr2_2:64799113-64799132 Msa0264780:CDS 25.0%
!!! ATTTTCTGGTTTAAATGTTC+AGG + chr2_2:64799127-64799146 Msa0264780:CDS 25.0%
!! CATTTGACATGATTTTGTTA+TGG + chr2_2:64799208-64799227 Msa0264780:intron 25.0%
! AAAGAAGAAGATTCAAAACT+TGG + chr2_2:64799551-64799570 Msa0264780:CDS 25.0%
! TATGAGTTTCATTTGAAAAC+CGG - chr2_2:64800121-64800140 None:intergenic 25.0%
! TGTTATTGTTGTTGTTGTTG+AGG - chr2_2:64797092-64797111 None:intergenic 30.0%
CAACAACAACAATAACATAG+AGG + chr2_2:64797095-64797114 Msa0264780:five_prime_UTR 30.0%
!! ACAGGAGAATAAAAAGTGTT+CGG + chr2_2:64797127-64797146 Msa0264780:five_prime_UTR 30.0%
AATGATATTGAGAAGGTCAA+TGG - chr2_2:64797269-64797288 None:intergenic 30.0%
AAAAAGGGTCAATAATTGCT+TGG + chr2_2:64797468-64797487 Msa0264780:intron 30.0%
!!! CAATAATTGCTTGGTTTTGA+AGG + chr2_2:64797477-64797496 Msa0264780:intron 30.0%
! AAAGCTTTGGTAGAAAACTA+TGG + chr2_2:64797544-64797563 Msa0264780:exon 30.0%
AACCTGAAGAATTTACTTGT+GGG - chr2_2:64797595-64797614 None:intergenic 30.0%
AAACCTGAAGAATTTACTTG+TGG - chr2_2:64797596-64797615 None:intergenic 30.0%
TTCAATCAACAATGAACATG+TGG + chr2_2:64797871-64797890 Msa0264780:CDS 30.0%
TGATAAAAACCATGAGAAGA+AGG - chr2_2:64797956-64797975 None:intergenic 30.0%
!! AATGTTTCTTCTGGTTTAGA+TGG + chr2_2:64798007-64798026 Msa0264780:CDS 30.0%
!! GTTTTTCAATGGGAGTTAAT+AGG + chr2_2:64798032-64798051 Msa0264780:CDS 30.0%
ATTTGAGAAAATAATCCAGC+TGG - chr2_2:64798118-64798137 None:intergenic 30.0%
! TTTTCTTTGTTACGCACTTT+TGG + chr2_2:64798178-64798197 Msa0264780:intron 30.0%
CTCGTTTCTGTTAAAATAGA+GGG - chr2_2:64798205-64798224 None:intergenic 30.0%
TCTCGTTTCTGTTAAAATAG+AGG - chr2_2:64798206-64798225 None:intergenic 30.0%
!!! TACTGATTTTTGATCCGAAA+TGG + chr2_2:64798326-64798345 Msa0264780:intron 30.0%
!! TTTCTCTTTAAAGTAGGACA+AGG - chr2_2:64798515-64798534 None:intergenic 30.0%
GTGAAAAAAAAAAACCCTAG+TGG + chr2_2:64798700-64798719 Msa0264780:intron 30.0%
TTATGTTAGTATGAGAGGAA+TGG + chr2_2:64798827-64798846 Msa0264780:CDS 30.0%
TATGTTAGTATGAGAGGAAT+GGG + chr2_2:64798828-64798847 Msa0264780:CDS 30.0%
! TAACGAATATGTGGATTATC+AGG + chr2_2:64799022-64799041 Msa0264780:CDS 30.0%
GAAATGATGTCTGAAAATGT+TGG + chr2_2:64799065-64799084 Msa0264780:CDS 30.0%
TCGTAAGTGTAGTTTCTTAA+TGG + chr2_2:64799180-64799199 Msa0264780:intron 30.0%
ATGGTTGATTAGAATGAAAC+AGG + chr2_2:64799227-64799246 Msa0264780:intron 30.0%
AACAGACACTTGTAGATTAT+TGG + chr2_2:64799851-64799870 Msa0264780:CDS 30.0%
GAAATCATGAAATCTGAATG+AGG - chr2_2:64800234-64800253 None:intergenic 30.0%
!! GCATTTGATTTGTAGAACAA+TGG + chr2_2:64800352-64800371 Msa0264780:intron 30.0%
ACAAACTGAGTGTAAGATGA+GGG - chr2_2:64796845-64796864 None:intergenic 35.0%
AACAAACTGAGTGTAAGATG+AGG - chr2_2:64796846-64796865 None:intergenic 35.0%
ATCTTGATTCACAGATTTGG+TGG - chr2_2:64796905-64796924 None:intergenic 35.0%
CCAATGGAAAGTGAAAAACA+TGG - chr2_2:64796934-64796953 None:intergenic 35.0%
! CCATGTTTTTCACTTTCCAT+TGG + chr2_2:64796931-64796950 Msa0264780:five_prime_UTR 35.0%
ACATAGAGGAACACATAAAC+AGG + chr2_2:64797109-64797128 Msa0264780:five_prime_UTR 35.0%
!!! AAACAGAGCGAGTTTTTTCA+AGG + chr2_2:64797708-64797727 Msa0264780:CDS 35.0%
AACAGTGAAAGAAGAAGAAG+AGG + chr2_2:64797793-64797812 Msa0264780:CDS 35.0%
ACAACAACAACAACAAGATC+AGG + chr2_2:64797841-64797860 Msa0264780:CDS 35.0%
CAACAACAACAACAAGATCA+GGG + chr2_2:64797842-64797861 Msa0264780:CDS 35.0%
!! GAAACATTCTGATTTGGCAA+AGG - chr2_2:64797995-64798014 None:intergenic 35.0%
CCAGAAGAAACATTCTGATT+TGG - chr2_2:64798001-64798020 None:intergenic 35.0%
CCAAATCAGAATGTTTCTTC+TGG + chr2_2:64797998-64798017 Msa0264780:CDS 35.0%
! TGATTTTTGATCCGAAATGG+TGG + chr2_2:64798329-64798348 Msa0264780:intron 35.0%
TAGTACACGTTACTAGTATG+TGG + chr2_2:64798429-64798448 Msa0264780:intron 35.0%
TACTAGTATGTGGACTTGTA+AGG + chr2_2:64798439-64798458 Msa0264780:intron 35.0%
TATTGAAGTTGTACATGCCA+CGG - chr2_2:64798471-64798490 None:intergenic 35.0%
AAAGTAGGACAAGGAAAACT+GGG - chr2_2:64798506-64798525 None:intergenic 35.0%
TAAAGTAGGACAAGGAAAAC+TGG - chr2_2:64798507-64798526 None:intergenic 35.0%
! TTTGTACTTGTTGCAACAAG+TGG + chr2_2:64798678-64798697 Msa0264780:intron 35.0%
GTTATGCAAGTTTAATTGGC+AGG + chr2_2:64798804-64798823 Msa0264780:intron 35.0%
ATGTCAACAATAGCTGAAGT+TGG + chr2_2:64798942-64798961 Msa0264780:CDS 35.0%
! AAGTCATGGTAACGAATATG+TGG + chr2_2:64799013-64799032 Msa0264780:CDS 35.0%
!! TGGATTATCAGGTTGATACT+TGG + chr2_2:64799033-64799052 Msa0264780:CDS 35.0%
!! GGATTATCAGGTTGATACTT+GGG + chr2_2:64799034-64799053 Msa0264780:CDS 35.0%
ATGATGTCTGAAAATGTTGG+TGG + chr2_2:64799068-64799087 Msa0264780:CDS 35.0%
GGTAGAATACTATCTAGCAT+TGG + chr2_2:64799148-64799167 Msa0264780:intron 35.0%
GTTGATTAGAATGAAACAGG+AGG + chr2_2:64799230-64799249 Msa0264780:intron 35.0%
AGGACATTCTAATTCTCCTT+TGG + chr2_2:64799253-64799272 Msa0264780:CDS 35.0%
ATACTCAATTGATGAGCCAA+AGG - chr2_2:64799272-64799291 None:intergenic 35.0%
GCCAAATACTTCATCTGAAA+TGG + chr2_2:64799292-64799311 Msa0264780:CDS 35.0%
! GCCATTTCAGATGAAGTATT+TGG - chr2_2:64799296-64799315 None:intergenic 35.0%
ATAATCGACAAGAGAAGAGA+TGG - chr2_2:64799614-64799633 None:intergenic 35.0%
!! CAAACCAAAAAGTACTTCCA+TGG + chr2_2:64799889-64799908 Msa0264780:CDS 35.0%
ATTTGAACTTCAGATGGCAA+AGG - chr2_2:64800095-64800114 None:intergenic 35.0%
! TTGCCATCTGAAGTTCAAAT+TGG + chr2_2:64800095-64800114 Msa0264780:CDS 35.0%
GACTTGAGATGGGAGAAAAA+GGG - chr2_2:64796811-64796830 None:intergenic 40.0%
!! TTGATTCACAGATTTGGTGG+TGG - chr2_2:64796902-64796921 None:intergenic 40.0%
! TGTTGTTGTTGAGGTTTGAG+TGG - chr2_2:64797083-64797102 None:intergenic 40.0%
! AGTGTTCGGTTTTTACACAG+AGG + chr2_2:64797141-64797160 Msa0264780:five_prime_UTR 40.0%
AACAGGACAAAACAGAGGAA+TGG - chr2_2:64797370-64797389 None:intergenic 40.0%
TACGAAACAGGACAAAACAG+AGG - chr2_2:64797375-64797394 None:intergenic 40.0%
TGAACTGTGAAGTATGGTGA+AGG - chr2_2:64797407-64797426 None:intergenic 40.0%
GGAGTTTGAACTGTGAAGTA+TGG - chr2_2:64797413-64797432 None:intergenic 40.0%
CACCCACAAGTAAATTCTTC+AGG + chr2_2:64797590-64797609 Msa0264780:CDS 40.0%
GAAAAAACTCGCTCTGTTTC+TGG - chr2_2:64797707-64797726 None:intergenic 40.0%
ACAACAACAAGATCAGGGTT+TGG + chr2_2:64797847-64797866 Msa0264780:CDS 40.0%
AACTCTGTTCCTTCTTCTCA+TGG + chr2_2:64797944-64797963 Msa0264780:CDS 40.0%
!! ACATTCTGATTTGGCAAAGG+TGG - chr2_2:64797992-64798011 None:intergenic 40.0%
TTTCCACCATGATTCTTCAC+TGG - chr2_2:64798064-64798083 None:intergenic 40.0%
GCAGGTTATGTTAGTATGAG+AGG + chr2_2:64798822-64798841 Msa0264780:intron 40.0%
ATGAGAGGAATGGGAACTTT+AGG + chr2_2:64798837-64798856 Msa0264780:CDS 40.0%
!! ATAGCTGAAGTTGGTGACAA+AGG + chr2_2:64798951-64798970 Msa0264780:CDS 40.0%
! GAAGCTTTTGGTGAAAGTCA+TGG + chr2_2:64798999-64799018 Msa0264780:CDS 40.0%
GATTAGAATGAAACAGGAGG+AGG + chr2_2:64799233-64799252 Msa0264780:intron 40.0%
! TTCATCTGAAATGGCAGCTA+TGG + chr2_2:64799301-64799320 Msa0264780:CDS 40.0%
TTGTTCGAGCAGTTCGTTTA+TGG + chr2_2:64799486-64799505 Msa0264780:CDS 40.0%
!!! CCATCCATGGAAGTACTTTT+TGG - chr2_2:64799896-64799915 None:intergenic 40.0%
!! CCAAAAAGTACTTCCATGGA+TGG + chr2_2:64799893-64799912 Msa0264780:CDS 40.0%
CGCTTGAATTAACCAACGAT+CGG - chr2_2:64800028-64800047 None:intergenic 40.0%
! CGATCGTTGGTTAATTCAAG+CGG + chr2_2:64800026-64800045 Msa0264780:CDS 40.0%
! CATCTGAAGTTCAAATTGGC+CGG + chr2_2:64800099-64800118 Msa0264780:CDS 40.0%
TGAAACCTCGCTAGTGATAT+CGG - chr2_2:64800177-64800196 None:intergenic 40.0%
ATTTCTCTCTCTCTAGCAAC+TGG + chr2_2:64800249-64800268 Msa0264780:CDS 40.0%
TTTCTCTCTCTCTAGCAACT+GGG + chr2_2:64800250-64800269 Msa0264780:CDS 40.0%
GGACTTGAGATGGGAGAAAA+AGG - chr2_2:64796812-64796831 None:intergenic 45.0%
TGTTGTTGAGGTTTGAGTGG+TGG - chr2_2:64797080-64797099 None:intergenic 45.0%
AGGTAGAGTGCATACGAAAC+AGG - chr2_2:64797387-64797406 None:intergenic 45.0%
TTGCAGCCAGTGAAGAATCA+TGG + chr2_2:64798055-64798074 Msa0264780:CDS 45.0%
AGACATAGTAGTTCACCAGC+TGG + chr2_2:64798100-64798119 Msa0264780:CDS 45.0%
CGTTTATGGTATGCTCCAGT+TGG + chr2_2:64799500-64799519 Msa0264780:CDS 45.0%
TTATGGTATGCTCCAGTTGG+AGG + chr2_2:64799503-64799522 Msa0264780:CDS 45.0%
ATAGAAAGCTCTCCTCCAAC+TGG - chr2_2:64799518-64799537 None:intergenic 45.0%
GACCTCTTCAGTACGACTAA+TGG - chr2_2:64799582-64799601 None:intergenic 45.0%
AATGTACCTGCTACACGTTC+AGG + chr2_2:64799804-64799823 Msa0264780:CDS 45.0%
ATGTACCTGCTACACGTTCA+GGG + chr2_2:64799805-64799824 Msa0264780:CDS 45.0%
CCTGTTGAAGATACCATCCA+TGG - chr2_2:64799909-64799928 None:intergenic 45.0%
CCATGGATGGTATCTTCAAC+AGG + chr2_2:64799906-64799925 Msa0264780:CDS 45.0%
ATGGAGGAGAATTGGAACTC+TGG - chr2_2:64799991-64800010 None:intergenic 45.0%
AGGAAGACATGGAGGAGAAT+TGG - chr2_2:64799999-64800018 None:intergenic 45.0%
TTCTCCTCCATGTCTTCCTT+TGG + chr2_2:64800000-64800019 Msa0264780:CDS 45.0%
TCTCCTCCATGTCTTCCTTT+GGG + chr2_2:64800001-64800020 Msa0264780:CDS 45.0%
! TCGTTGGTTAATTCAAGCGG+TGG + chr2_2:64800029-64800048 Msa0264780:CDS 45.0%
! CGTTGGTTAATTCAAGCGGT+GGG + chr2_2:64800030-64800049 Msa0264780:CDS 45.0%
CGGCCAATTTGAACTTCAGA+TGG - chr2_2:64800101-64800120 None:intergenic 45.0%
!! GAAAAATATATATAAAAATA+GGG - chr2_2:64797342-64797361 None:intergenic 5.0%
!! TGAAAAATATATATAAAAAT+AGG - chr2_2:64797343-64797362 None:intergenic 5.0%
GACACGTGAGGACTTGAGAT+GGG - chr2_2:64796821-64796840 None:intergenic 50.0%
TGACACGTGAGGACTTGAGA+TGG - chr2_2:64796822-64796841 None:intergenic 50.0%
TAAGATGAGGGTGACACGTG+AGG - chr2_2:64796833-64796852 None:intergenic 50.0%
GTGGTTCTTTGTGCAGCCAA+TGG - chr2_2:64796950-64796969 None:intergenic 50.0%
!! CGCTCTGTTTCTGGACTTGA+TGG - chr2_2:64797698-64797717 None:intergenic 50.0%
CAGCCAGTGAAGAATCATGG+TGG + chr2_2:64798058-64798077 Msa0264780:CDS 50.0%
!! GACTTGTAAGGTACTGTCCG+TGG + chr2_2:64798451-64798470 Msa0264780:intron 50.0%
CGCCATTAGTCGTACTGAAG+AGG + chr2_2:64799577-64799596 Msa0264780:CDS 50.0%
!! CAAGGATAGCTTCTGGCTCA+AGG - chr2_2:64799958-64799977 None:intergenic 50.0%
GTCTGTGCAAGGATAGCTTC+TGG - chr2_2:64799965-64799984 None:intergenic 50.0%
AACTCTGGTGTGTCTGTGCA+AGG - chr2_2:64799976-64799995 None:intergenic 50.0%
ATCGGTCCCAAAGGAAGACA+TGG - chr2_2:64800010-64800029 None:intergenic 50.0%
TAACCAACGATCGGTCCCAA+AGG - chr2_2:64800019-64800038 None:intergenic 50.0%
CAGAAGCTTCTGGTGGCAAT+GGG - chr2_2:64800148-64800167 None:intergenic 50.0%
TCAGAAGCTTCTGGTGGCAA+TGG - chr2_2:64800149-64800168 None:intergenic 50.0%
GTTGGATCAGAAGCTTCTGG+TGG - chr2_2:64800155-64800174 None:intergenic 50.0%
TCGGTTGGATCAGAAGCTTC+TGG - chr2_2:64800158-64800177 None:intergenic 50.0%
TCCAACCGATATCACTAGCG+AGG + chr2_2:64800169-64800188 Msa0264780:CDS 50.0%
ACCTCGCTAGTGATATCGGT+TGG - chr2_2:64800173-64800192 None:intergenic 50.0%
CTAGCGAGGTTTCACAATCG+AGG + chr2_2:64800183-64800202 Msa0264780:CDS 50.0%
AGGCTTGAGAGAGATACAGC+TGG + chr2_2:64800203-64800222 Msa0264780:CDS 50.0%
CTTAGCCCTGAACGTGTAGC+AGG - chr2_2:64799813-64799832 None:intergenic 55.0%
GGTCCCAAAGGAAGACATGG+AGG - chr2_2:64800007-64800026 None:intergenic 55.0%
!! CTTCCTTTGGGACCGATCGT+TGG + chr2_2:64800013-64800032 Msa0264780:CDS 55.0%
GGCAAAGGCTGCAGCACAGA+AGG - chr2_2:64800080-64800099 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 64796791 64800423 64796791 ID=Msa0264780;Name=Msa0264780
chr2_2 mRNA 64796791 64800423 64796791 ID=Msa0264780-mRNA-1;Parent=Msa0264780;Name=Msa0264780-mRNA-1;_AED=0.28;_eAED=0.28;_QI=436|0.5|0.42|0.57|0.83|0.71|7|0|573
chr2_2 exon 64796791 64797162 64796791 ID=Msa0264780-mRNA-1:exon:20285;Parent=Msa0264780-mRNA-1
chr2_2 exon 64797499 64798151 64797499 ID=Msa0264780-mRNA-1:exon:20286;Parent=Msa0264780-mRNA-1
chr2_2 exon 64798826 64799148 64798826 ID=Msa0264780-mRNA-1:exon:20287;Parent=Msa0264780-mRNA-1
chr2_2 exon 64799239 64799365 64799239 ID=Msa0264780-mRNA-1:exon:20288;Parent=Msa0264780-mRNA-1
chr2_2 exon 64799477 64799598 64799477 ID=Msa0264780-mRNA-1:exon:20289;Parent=Msa0264780-mRNA-1
chr2_2 exon 64799768 64800271 64799768 ID=Msa0264780-mRNA-1:exon:20290;Parent=Msa0264780-mRNA-1
chr2_2 exon 64800367 64800423 64800367 ID=Msa0264780-mRNA-1:exon:20291;Parent=Msa0264780-mRNA-1
chr2_2 five_prime_UTR 64796791 64797162 64796791 ID=Msa0264780-mRNA-1:five_prime_utr;Parent=Msa0264780-mRNA-1
chr2_2 five_prime_UTR 64797499 64797562 64797499 ID=Msa0264780-mRNA-1:five_prime_utr;Parent=Msa0264780-mRNA-1
chr2_2 CDS 64797563 64798151 64797563 ID=Msa0264780-mRNA-1:cds;Parent=Msa0264780-mRNA-1
chr2_2 CDS 64798826 64799148 64798826 ID=Msa0264780-mRNA-1:cds;Parent=Msa0264780-mRNA-1
chr2_2 CDS 64799239 64799365 64799239 ID=Msa0264780-mRNA-1:cds;Parent=Msa0264780-mRNA-1
chr2_2 CDS 64799477 64799598 64799477 ID=Msa0264780-mRNA-1:cds;Parent=Msa0264780-mRNA-1
chr2_2 CDS 64799768 64800271 64799768 ID=Msa0264780-mRNA-1:cds;Parent=Msa0264780-mRNA-1
chr2_2 CDS 64800367 64800423 64800367 ID=Msa0264780-mRNA-1:cds;Parent=Msa0264780-mRNA-1
Gene Sequence

>Msa0264780

ATGGAGTCAGATCTTCATCAACAACAACACCCACAAGTAAATTCTTCAGGTTTAACAAGGTTTAAATCAGCACCAAGTTCATATTTCAACAACATCATTGACAGAGAATTCTACGAGCATGTTTTCAATAAACCATCAAGTCCAGAAACAGAGCGAGTTTTTTCAAGGTTTATTAACAGTTTTGGTTCAGAAGATGATTTACTAGCAGCTCAAAAAATCTCAGTAGATTCAACAGTGAAAGAAGAAGAAGAGGTTAATATGAATCATCAACAACAACAACAACAACAACAACAAGATCAGGGTTTGGCTTCAATCAACAATGAACATGTGGTTCATCAGCAGAGTAATATCAATATCAATATCAGTGATAATAATTATAACAACTCTGTTCCTTCTTCTCATGGTTTTTATCAAAGTTCTATGATGCCACCTTTGCCAAATCAGAATGTTTCTTCTGGTTTAGATGGAAGTTTTTCAATGGGAGTTAATAGGTTGCAGCCAGTGAAGAATCATGGTGGAAATAATTCAAATCTTATTAGACATAGTAGTTCACCAGCTGGATTATTTTCTCAAATTAACATTGAAAATGGTTATGTTAGTATGAGAGGAATGGGAACTTTAGGAGCTGTTAATAATTCTATGAAAGAACCAAAATTTTCTACTTCAAGGAATTTGAAGAATCAATCAAACTATTCATCAGGGTTAATGTCAACAATAGCTGAAGTTGGTGACAAAGGCAATAGAGAAAATAATGAAGAAAATGAAGCTTTTGGTGAAAGTCATGGTAACGAATATGTGGATTATCAGGTTGATACTTGGGATGATTCTGAAATGATGTCTGAAAATGTTGGTGGTTTAAAAAGATTTAGAGATAATGATTCAAAACAACAATTTTCTGGTTTAAATGTTCAGAATGAAACAGGAGGAGGACATTCTAATTCTCCTTTGGCTCATCAATTGAGTATGCCAAATACTTCATCTGAAATGGCAGCTATGGAGAAGTTTCTGCATTTCTCAGATTCTGTTCCGATGAAAATTCACATAGGTGTTGTTCGAGCAGTTCGTTTATGGTATGCTCCAGTTGGAGGAGAGCTTTCTATTGAGATCAAACTAAAAGAAGAAGATTCAAAACTTGGATTCGCCATTAGTCGTACTGAAGAGGGATTTATTTTCATATCATCAGTGATTAATCAAGAAAATGTACCTGCTACACGTTCAGGGCTAAGCAGTCTTTATAAACTAGCAACAGACACTTGTAGATTATTGGTAGTGTCAAGAGTGTCAAACCAAAAAGTACTTCCATGGATGGTATCTTCAACAGGAGCAATTCGATGTTACGACACAGTTTCCTTGAGCCAGAAGCTATCCTTGCACAGACACACCAGAGTTCCAATTCTCCTCCATGTCTTCCTTTGGGACCGATCGTTGGTTAATTCAAGCGGTGGGAGCAATAGATTCAGAGCTCTATCTCCTTCTGTGCTGCAGCCTTTGCCATCTGAAGTTCAAATTGGCCGGTTTTCAAATGAAACTCATACGCTCCCATTGCCACCAGAAGCTTCTGATCCAACCGATATCACTAGCGAGGTTTCACAATCGAGGCTTGAGAGAGATACAGCTGGTGAAGCCTCATTCAGATTTCATGATTTCTCTCTCTCTAGCAACTGGAACAATGGAGCATATAGAGTTGAAAAAGAAAAACCATTATTTTGTTGTTCTTTGTAG

Protein sequence

>Msa0264780

MESDLHQQQHPQVNSSGLTRFKSAPSSYFNNIIDREFYEHVFNKPSSPETERVFSRFINSFGSEDDLLAAQKISVDSTVKEEEEVNMNHQQQQQQQQQDQGLASINNEHVVHQQSNININISDNNYNNSVPSSHGFYQSSMMPPLPNQNVSSGLDGSFSMGVNRLQPVKNHGGNNSNLIRHSSSPAGLFSQINIENGYVSMRGMGTLGAVNNSMKEPKFSTSRNLKNQSNYSSGLMSTIAEVGDKGNRENNEENEAFGESHGNEYVDYQVDTWDDSEMMSENVGGLKRFRDNDSKQQFSGLNVQNETGGGHSNSPLAHQLSMPNTSSEMAAMEKFLHFSDSVPMKIHIGVVRAVRLWYAPVGGELSIEIKLKEEDSKLGFAISRTEEGFIFISSVINQENVPATRSGLSSLYKLATDTCRLLVVSRVSNQKVLPWMVSSTGAIRCYDTVSLSQKLSLHRHTRVPILLHVFLWDRSLVNSSGGSNRFRALSPSVLQPLPSEVQIGRFSNETHTLPLPPEASDPTDITSEVSQSRLERDTAGEASFRFHDFSLSSNWNNGAYRVEKEKPLFCCSL*