AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1380720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1380720 MtrunA17_Chr2g0280611 93.991 233 12 1 1 231 1 233 2.88e-164 452
Msa1380720 MtrunA17_Chr4g0067641 62.727 110 41 0 75 184 79 188 3.61e-49 162
Msa1380720 MtrunA17_Chr1g0166671 52.518 139 58 2 79 209 76 214 7.96e-45 149
Msa1380720 MtrunA17_Chr1g0187251 48.921 139 63 3 79 209 94 232 6.47e-42 142
Msa1380720 MtrunA17_Chr2g0277431 55.039 129 57 1 76 203 115 243 4.09e-41 146
Msa1380720 MtrunA17_Chr2g0316311 51.261 119 52 2 75 193 85 197 1.88e-36 131
Msa1380720 MtrunA17_Chr1g0148081 36.150 213 107 5 1 211 28 213 4.33e-36 129
Msa1380720 MtrunA17_Chr6g0467031 33.758 157 86 3 23 178 30 169 7.31e-24 94.4
Msa1380720 MtrunA17_Chr2g0316321 43.564 101 42 4 75 175 74 159 1.15e-20 85.1
Msa1380720 MtrunA17_Chr1g0198431 32.432 111 75 0 74 184 68 178 4.70e-17 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1380720 AT1G11430.1 83.889 180 28 1 51 229 53 232 4.62e-109 313
Msa1380720 AT3G06790.2 62.727 110 40 1 75 184 84 192 1.81e-46 154
Msa1380720 AT3G06790.1 62.727 110 40 1 75 184 84 192 2.19e-46 154
Msa1380720 AT1G32580.1 50.355 141 59 3 79 209 87 226 3.16e-43 145
Msa1380720 AT2G35240.1 56.604 106 46 0 79 184 90 195 4.60e-42 143
Msa1380720 AT4G20020.2 60.550 109 41 2 76 182 78 186 1.77e-38 138
Msa1380720 AT4G20020.1 60.550 109 41 2 76 182 78 186 2.83e-38 137
Msa1380720 AT5G44780.1 59.633 109 43 1 82 189 79 187 4.22e-37 137
Msa1380720 AT3G15000.1 48.739 119 55 2 75 193 87 199 1.31e-34 127
Msa1380720 AT1G72530.1 42.453 106 60 1 79 184 48 152 4.06e-29 108
Msa1380720 AT1G72530.2 39.370 127 68 3 66 184 31 156 7.14e-27 102
Msa1380720 AT3G20930.2 30.769 117 79 1 61 175 147 263 7.46e-14 70.5
Msa1380720 AT3G20930.2 32.955 88 59 0 86 173 71 158 5.01e-12 65.1
Msa1380720 AT3G20930.1 30.769 117 79 1 61 175 147 263 7.62e-14 70.1
Msa1380720 AT3G20930.1 32.955 88 59 0 86 173 71 158 5.43e-12 64.7
Msa1380720 AT1G53260.2 49.254 67 29 1 127 193 3 64 3.46e-13 67.0
Msa1380720 AT1G53260.1 51.724 58 28 0 127 184 3 60 5.56e-13 67.0
Msa1380720 AT5G44780.2 59.184 49 18 1 141 189 2 48 7.94e-11 61.6

Find 96 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACGGATTTGATAATATTTA+TGG 0.128227 tig0020402:-1286 Msa1380720:three_prime_UTR
ATAGGTTAGGGTTAGGGTTT+TGG 0.172019 tig0020402:+3984 None:intergenic
TTGAATTCGGATAGGGTTTC+GGG 0.228428 tig0020402:+3903 None:intergenic
ATAATATTTATGGCCCTATA+TGG 0.242864 tig0020402:-1276 Msa1380720:three_prime_UTR
TAGGTTTGCCTGGTGTTCTC+TGG 0.252246 tig0020402:-2338 Msa1380720:CDS
TCGGATAGGGTTTCGGGAAT+TGG 0.264768 tig0020402:+3909 None:intergenic
CTCTTTGATCCACTGCGTTT+TGG 0.276909 tig0020402:+2123 None:intergenic
AGGGATGGCCCTCCTGCTGC+TGG 0.277213 tig0020402:-2075 Msa1380720:CDS
CTTGAATTCGGATAGGGTTT+CGG 0.277711 tig0020402:+3902 None:intergenic
GAAGTTGAAACTTGGGGTTT+TGG 0.278259 tig0020402:+3957 None:intergenic
ATCTTAGGAATATGTGCTTT+TGG 0.283908 tig0020402:-1505 Msa1380720:three_prime_UTR
TTGATAATGCCGCGTGATTA+AGG 0.292956 tig0020402:+1632 None:intergenic
AGGGTTTCGGGAATTGGGTT+TGG 0.293537 tig0020402:+3915 None:intergenic
TATGGGTTTGAGCAGCTTCT+AGG 0.303429 tig0020402:+1597 None:intergenic
TGGGATGATAGGTTAGGGTT+AGG 0.303465 tig0020402:+3977 None:intergenic
TTCATATTCTAACACATCTA+TGG 0.308742 tig0020402:+1240 None:intergenic
TGTTAGGGTTGTTTGTAATT+TGG 0.316234 tig0020402:-1450 Msa1380720:three_prime_UTR
GCTGTCTCTTGTCTTGGCTT+TGG 0.323442 tig0020402:+2048 None:intergenic
GGAGGAACGATCCTTTGTTT+TGG 0.326208 tig0020402:+1653 None:intergenic
GGGATGATAGGTTAGGGTTA+GGG 0.334623 tig0020402:+3978 None:intergenic
TGAGATGTAAGACTGGTGTT+AGG 0.342528 tig0020402:-1466 Msa1380720:three_prime_UTR
TTGTCTTCCATCTCTCAAAA+TGG 0.346471 tig0020402:-4034 Msa1380720:CDS
CAAACTCTTGCCACTGTCTT+GGG 0.352865 tig0020402:-3721 Msa1380720:CDS
CGGATAGGGTTTCGGGAATT+GGG 0.358641 tig0020402:+3910 None:intergenic
CAATCATTGGCTTATTGTAA+TGG 0.359191 tig0020402:-3797 Msa1380720:CDS
CATCTAGTGAGAATTCAATA+TGG 0.361008 tig0020402:+1579 None:intergenic
CTGGTTGTGATTACAATCAT+TGG 0.368609 tig0020402:-3810 Msa1380720:CDS
GTTACTCATGATACCCATAT+AGG 0.381685 tig0020402:+1262 None:intergenic
GAGGCAGCTGTCTCTTGTCT+TGG 0.382851 tig0020402:+2042 None:intergenic
TCAAACTCTTGCCACTGTCT+TGG 0.389785 tig0020402:-3722 Msa1380720:CDS
GGCATGTCACAAATTATCTT+AGG 0.393627 tig0020402:-1520 Msa1380720:three_prime_UTR
GTATGTATTAGCTTTCTTAA+CGG 0.396600 tig0020402:-1304 Msa1380720:three_prime_UTR
GCGAGAGGGTGCAGGATCCT+TGG 0.397568 tig0020402:+3768 None:intergenic
GGCTTTGGACGCCCAGCAGC+AGG 0.406073 tig0020402:+2063 None:intergenic
GTCCTGCTTATAGGTTTGCC+TGG 0.407569 tig0020402:-2348 Msa1380720:intron
AGAGGATTGAAGTTGAAACT+TGG 0.412741 tig0020402:+3949 None:intergenic
CATCCAATACTGCTTGAATT+CGG 0.416464 tig0020402:+3890 None:intergenic
TAGGTGACAAGTACATCAAC+GGG 0.417308 tig0020402:-2179 Msa1380720:CDS
GAACACATAAAGTGACTGAT+AGG 0.418366 tig0020402:-1411 Msa1380720:three_prime_UTR
AGGTTTGCCTGGTGTTCTCT+GGG 0.419184 tig0020402:-2337 Msa1380720:CDS
GATCAAAGAGTGACGGTAGA+AGG 0.423075 tig0020402:-2110 Msa1380720:CDS
TTGACATCTATGTATGAGTC+TGG 0.424793 tig0020402:+2309 None:intergenic
GAGGATTGAAGTTGAAACTT+GGG 0.426358 tig0020402:+3950 None:intergenic
TTACTCATGATACCCATATA+GGG 0.435497 tig0020402:+1263 None:intergenic
CGAGAGGGTGCAGGATCCTT+GGG 0.445990 tig0020402:+3769 None:intergenic
TAATATTTATGGCCCTATAT+GGG 0.449685 tig0020402:-1275 Msa1380720:three_prime_UTR
AAGTTTACAGCATACTCAAA+AGG 0.460909 tig0020402:-1542 Msa1380720:three_prime_UTR
CAAGTTTGTAACAATGCCAT+TGG 0.468053 tig0020402:+4054 None:intergenic
ATCTAGTGAGAATTCAATAT+GGG 0.478721 tig0020402:+1580 None:intergenic
CAATGTGCATATTTAGCTCT+AGG 0.491786 tig0020402:-1368 Msa1380720:three_prime_UTR
TATCCGAATTCAAGCAGTAT+TGG 0.493381 tig0020402:-3893 Msa1380720:CDS
AGTGTAAGTTGTGGTGCTAA+AGG 0.493962 tig0020402:+2498 None:intergenic
ATCAATCATTTGCTCGCGAG+AGG 0.499639 tig0020402:+3753 None:intergenic
GGGATGGCCCTCCTGCTGCT+GGG 0.501985 tig0020402:-2074 Msa1380720:CDS
AGCAACCTCTGAGAAATTCA+AGG 0.504768 tig0020402:-2452 Msa1380720:CDS
ATTTGCTCGCGAGAGGGTGC+AGG 0.511963 tig0020402:+3760 None:intergenic
TTTGGACGCCCAGCAGCAGG+AGG 0.512472 tig0020402:+2066 None:intergenic
ATACTGCTTGAATTCGGATA+GGG 0.516734 tig0020402:+3896 None:intergenic
ACATACTTGTATGCTTATCA+TGG 0.518163 tig0020402:+1321 None:intergenic
TTTAGCACCACAACTTACAC+TGG 0.519722 tig0020402:-2496 Msa1380720:CDS
GGTTTGGATTTGATAGAGAG+AGG 0.523232 tig0020402:+3931 None:intergenic
AATACTGCTTGAATTCGGAT+AGG 0.526486 tig0020402:+3895 None:intergenic
AGTTTACAGCATACTCAAAA+GGG 0.531650 tig0020402:-1541 Msa1380720:three_prime_UTR
GAGATGTAAGACTGGTGTTA+GGG 0.538851 tig0020402:-1465 Msa1380720:three_prime_UTR
ACTTGTATGCTTATCATGGC+TGG 0.540012 tig0020402:+1325 None:intergenic
CTCTTGCCACTGTCTTGGGA+AGG 0.548600 tig0020402:-3717 Msa1380720:intron
ATATTTAGCTCTAGGTGTCA+TGG 0.550047 tig0020402:-1360 Msa1380720:three_prime_UTR
TATTGTAATGGAGTTTCCCA+AGG 0.561619 tig0020402:-3785 Msa1380720:CDS
TTAGAGTAATTCCAAAACAA+AGG 0.563390 tig0020402:-1664 Msa1380720:three_prime_UTR
GAGAGTCTTATCATTTCCAA+TGG 0.571929 tig0020402:-4070 Msa1380720:exon
AGGATTGAAGTTGAAACTTG+GGG 0.575115 tig0020402:+3951 None:intergenic
TTATTTATGAGATGTAAGAC+TGG 0.585810 tig0020402:-1473 Msa1380720:three_prime_UTR
GGAAGTACCCAGAGAACACC+AGG 0.587562 tig0020402:+2330 None:intergenic
TTAGGTGACAAGTACATCAA+CGG 0.594359 tig0020402:-2180 Msa1380720:intron
AGGTATGAGAGACGGAGGGA+TGG 0.596674 tig0020402:-2090 Msa1380720:CDS
GCAACCTCTGAGAAATTCAA+GGG 0.607102 tig0020402:-2451 Msa1380720:intron
CGCAGTGGATCAAAGAGTGA+CGG 0.608782 tig0020402:-2117 Msa1380720:CDS
CAAAACTGAAAATCACCTGA+AGG 0.609010 tig0020402:+1688 None:intergenic
TCAATCATTTGCTCGCGAGA+GGG 0.612753 tig0020402:+3754 None:intergenic
CAATGATTGTAATCACAACC+AGG 0.618731 tig0020402:+3811 None:intergenic
GAATGGATTACCTCATGTAG+AGG 0.619432 tig0020402:+2011 None:intergenic
ACGGTAGAAGGTATGAGAGA+CGG 0.623361 tig0020402:-2098 Msa1380720:CDS
TTGGACGCCCAGCAGCAGGA+GGG 0.625944 tig0020402:+2067 None:intergenic
AGAGAGACAATTATGCTACC+TGG 0.627529 tig0020402:-3829 Msa1380720:CDS
TCATGTAGAGGATGAATCTG+AGG 0.630035 tig0020402:+2023 None:intergenic
TCAGATTCATCCTCTACATG+AGG 0.646621 tig0020402:-2021 Msa1380720:intron
TGATAAGTAGGGTACTTGCA+AGG 0.653678 tig0020402:+2147 None:intergenic
GTAGAAGGTATGAGAGACGG+AGG 0.663095 tig0020402:-2095 Msa1380720:CDS
ATTACCCTTGAATTTCTCAG+AGG 0.665837 tig0020402:+2447 None:intergenic
ATCGTTCCTCCTTAATCACG+CGG 0.684927 tig0020402:-1641 Msa1380720:three_prime_UTR
TAGAAGGTATGAGAGACGGA+GGG 0.692634 tig0020402:-2094 Msa1380720:CDS
ACTTATCAACCAAAACGCAG+TGG 0.704807 tig0020402:-2132 Msa1380720:CDS
ATAGAACCTTCCCAAGACAG+TGG 0.708042 tig0020402:+3711 None:intergenic
CTGAAATCCAGTGTAAGTTG+TGG 0.717652 tig0020402:+2489 None:intergenic
ATAATGCCGCGTGATTAAGG+AGG 0.725292 tig0020402:+1635 None:intergenic
AGGTGACAAGTACATCAACG+GGG 0.822250 tig0020402:-2178 Msa1380720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTGTTAAATG+AGG - tig0020402:1645-1664 Msa1380720:three_prime_UTR 10.0%
!!! TTTTTTTTTTTGTTAAATGA+GGG - tig0020402:1646-1665 Msa1380720:three_prime_UTR 10.0%
!!! TATCAATTCTTTTAAATTTT+AGG - tig0020402:3059-3078 Msa1380720:intron 10.0%
!!! TTTTATTGATTGTGTTTTAA+AGG - tig0020402:1732-1751 Msa1380720:intron 15.0%
!!! AATTAAGTGTTTTAAATGAT+TGG - tig0020402:2053-2072 Msa1380720:CDS 15.0%
!! TATTATATATGGTTCTTATT+AGG - tig0020402:2309-2328 Msa1380720:CDS 15.0%
!! ATTATATATGGTTCTTATTA+GGG - tig0020402:2310-2329 Msa1380720:CDS 15.0%
!!! ATTTTAAATAAAAAGTTGGT+TGG - tig0020402:2545-2564 Msa1380720:intron 15.0%
!! AAACAAAATTAGAAGCAAAA+GGG + tig0020402:1577-1596 None:intergenic 20.0%
!! AAAACAAAATTAGAAGCAAA+AGG + tig0020402:1578-1597 None:intergenic 20.0%
!! ATATTGAACTATCTTTCATT+TGG + tig0020402:2217-2236 None:intergenic 20.0%
!! AAATCGCATACTATTATATA+TGG - tig0020402:2298-2317 Msa1380720:CDS 20.0%
!! GTTAGAAGTAAAAATATCTA+CGG - tig0020402:2429-2448 Msa1380720:intron 20.0%
!!! TAATAATGGATTCTATTTTG+TGG - tig0020402:2585-2604 Msa1380720:intron 20.0%
!!! AATAATGGATTCTATTTTGT+GGG - tig0020402:2586-2605 Msa1380720:intron 20.0%
!!! GAATCATTGATAGTTTATAT+AGG + tig0020402:3331-3350 None:intergenic 20.0%
!!! AACGGATTTGATAATATTTA+TGG - tig0020402:3971-3990 Msa1380720:CDS 20.0%
! AACAAAATTAGAAGCAAAAG+GGG + tig0020402:1576-1595 None:intergenic 25.0%
!! CTTTGTTTCAATTTGGAAAT+TGG - tig0020402:1761-1780 Msa1380720:intron 25.0%
! TTTCAATTTGGAAATTGGAA+TGG - tig0020402:1766-1785 Msa1380720:intron 25.0%
! AGAATATATAGCAATAGTGT+CGG - tig0020402:1827-1846 Msa1380720:intron 25.0%
!!! ATTTTGTTTAGACTTTAGCA+TGG - tig0020402:1862-1881 Msa1380720:intron 25.0%
! ATGAAATGGAAGAATATTCT+AGG - tig0020402:1911-1930 Msa1380720:intron 25.0%
! AAATGTATCAAATGTTTCAG+AGG - tig0020402:1949-1968 Msa1380720:intron 25.0%
! ATGGTATACAATGGTAATAA+TGG - tig0020402:2571-2590 Msa1380720:intron 25.0%
!!! ATAATGGATTCTATTTTGTG+GGG - tig0020402:2587-2606 Msa1380720:intron 25.0%
! AATAGTAATAGATGTGTTTG+TGG - tig0020402:2696-2715 Msa1380720:intron 25.0%
! GATGTCAAAAATAAAGACTA+CGG - tig0020402:2963-2982 Msa1380720:intron 25.0%
!!! TTAGTGATAAGATTTTCAAG+AGG + tig0020402:3038-3057 None:intergenic 25.0%
! TAGGTATAACTTAACATATC+AGG + tig0020402:3312-3331 None:intergenic 25.0%
! ACTATCAATGATTCATATCA+TGG - tig0020402:3337-3356 Msa1380720:intron 25.0%
!! AGTTAGGATTTTTGTCTAAT+AGG - tig0020402:3380-3399 Msa1380720:intron 25.0%
! TTAGAGTAATTCCAAAACAA+AGG - tig0020402:3593-3612 Msa1380720:intron 25.0%
! ATCTAGTGAGAATTCAATAT+GGG + tig0020402:3680-3699 None:intergenic 25.0%
! TTATTTATGAGATGTAAGAC+TGG - tig0020402:3784-3803 Msa1380720:CDS 25.0%
!!! GTATGTATTAGCTTTCTTAA+CGG - tig0020402:3953-3972 Msa1380720:CDS 25.0%
! ATAATATTTATGGCCCTATA+TGG - tig0020402:3981-4000 Msa1380720:CDS 25.0%
! TAATATTTATGGCCCTATAT+GGG - tig0020402:3982-4001 Msa1380720:CDS 25.0%
! TTCATATTCTAACACATCTA+TGG + tig0020402:4020-4039 None:intergenic 25.0%
!! CAATCATTGGCTTATTGTAA+TGG - tig0020402:1460-1479 Msa1380720:three_prime_UTR 30.0%
!! GTGAAAGCTTTGTTTCAATT+TGG - tig0020402:1754-1773 Msa1380720:intron 30.0%
TGGTTCAAATATGACTCAAT+TGG - tig0020402:1882-1901 Msa1380720:intron 30.0%
GGTTCAAATATGACTCAATT+GGG - tig0020402:1883-1902 Msa1380720:intron 30.0%
!! GTGTTTTAAATGATTGGTCA+CGG - tig0020402:2059-2078 Msa1380720:CDS 30.0%
!! TGTTTTAAATGATTGGTCAC+GGG - tig0020402:2060-2079 Msa1380720:CDS 30.0%
AACAGAATCATTAGAGAAGT+AGG - tig0020402:2108-2127 Msa1380720:CDS 30.0%
ACAGAATCATTAGAGAAGTA+GGG - tig0020402:2109-2128 Msa1380720:CDS 30.0%
AAGTAGGGTAGTACAAATTA+CGG - tig0020402:2124-2143 Msa1380720:CDS 30.0%
TAACTTGAAACCTTTCTAGA+AGG + tig0020402:2279-2298 None:intergenic 30.0%
AGTTTATAGAAGCTACTAAG+TGG - tig0020402:2396-2415 Msa1380720:intron 30.0%
! AAATTCTTTTCCCACAAGAT+GGG + tig0020402:2518-2537 None:intergenic 30.0%
!! ATAAAAAGTTGGTTGGTGAA+TGG - tig0020402:2552-2571 Msa1380720:intron 30.0%
!!! TAATGGATTCTATTTTGTGG+GGG - tig0020402:2588-2607 Msa1380720:intron 30.0%
!!! GGATTTTGTTTTGTTCAACA+TGG - tig0020402:2631-2650 Msa1380720:intron 30.0%
! TTTGTTCAACATGGTAATGA+TGG - tig0020402:2640-2659 Msa1380720:intron 30.0%
TCAAGGGTAATGTTTCAATT+CGG - tig0020402:2822-2841 Msa1380720:intron 30.0%
TATTGAGCGCATGAAAAATT+AGG + tig0020402:3010-3029 None:intergenic 30.0%
TGTCTAATAGGAAATGAGAA+TGG - tig0020402:3392-3411 Msa1380720:intron 30.0%
GTCTAATAGGAAATGAGAAT+GGG - tig0020402:3393-3412 Msa1380720:intron 30.0%
CATCTAGTGAGAATTCAATA+TGG + tig0020402:3681-3700 None:intergenic 30.0%
AAGTTTACAGCATACTCAAA+AGG - tig0020402:3715-3734 Msa1380720:intron 30.0%
AGTTTACAGCATACTCAAAA+GGG - tig0020402:3716-3735 Msa1380720:intron 30.0%
! ATCTTAGGAATATGTGCTTT+TGG - tig0020402:3752-3771 Msa1380720:CDS 30.0%
TGTTAGGGTTGTTTGTAATT+TGG - tig0020402:3807-3826 Msa1380720:CDS 30.0%
ACATACTTGTATGCTTATCA+TGG + tig0020402:3939-3958 None:intergenic 30.0%
TTACTCATGATACCCATATA+GGG + tig0020402:3997-4016 None:intergenic 30.0%
! GAGAGTCTTATCATTTCCAA+TGG - tig0020402:1187-1206 Msa1380720:three_prime_UTR 35.0%
CAAGTTTGTAACAATGCCAT+TGG + tig0020402:1206-1225 None:intergenic 35.0%
TTGTCTTCCATCTCTCAAAA+TGG - tig0020402:1223-1242 Msa1380720:three_prime_UTR 35.0%
!! ATTGTAGCCATTTTGAGAGA+TGG + tig0020402:1233-1252 None:intergenic 35.0%
! AAGTTGAAACTTGGGGTTTT+GGG + tig0020402:1302-1321 None:intergenic 35.0%
AGGATTGAAGTTGAAACTTG+GGG + tig0020402:1309-1328 None:intergenic 35.0%
GAGGATTGAAGTTGAAACTT+GGG + tig0020402:1310-1329 None:intergenic 35.0%
AGAGGATTGAAGTTGAAACT+TGG + tig0020402:1311-1330 None:intergenic 35.0%
ATACTGCTTGAATTCGGATA+GGG + tig0020402:1364-1383 None:intergenic 35.0%
AATACTGCTTGAATTCGGAT+AGG + tig0020402:1365-1384 None:intergenic 35.0%
TATCCGAATTCAAGCAGTAT+TGG - tig0020402:1364-1383 Msa1380720:three_prime_UTR 35.0%
CATCCAATACTGCTTGAATT+CGG + tig0020402:1370-1389 None:intergenic 35.0%
CAATGATTGTAATCACAACC+AGG + tig0020402:1449-1468 None:intergenic 35.0%
CTGGTTGTGATTACAATCAT+TGG - tig0020402:1447-1466 Msa1380720:three_prime_UTR 35.0%
! TATTGTAATGGAGTTTCCCA+AGG - tig0020402:1472-1491 Msa1380720:three_prime_UTR 35.0%
!! AGGGTTTTGTAGTTGTTTGT+AGG - tig0020402:1665-1684 Msa1380720:three_prime_UTR 35.0%
TCAATTGGGCTACTATGAAA+TGG - tig0020402:1897-1916 Msa1380720:intron 35.0%
TCCTAATCATGTCTTGTCTT+CGG + tig0020402:2089-2108 None:intergenic 35.0%
! AATTACGGTAGTCTCGTTTT+AGG - tig0020402:2139-2158 Msa1380720:CDS 35.0%
ATCCTCAAGGATACTTCTAT+AGG + tig0020402:2188-2207 None:intergenic 35.0%
!! TATAGAAGTATCCTTGAGGA+TGG - tig0020402:2187-2206 Msa1380720:intron 35.0%
GTTGTGACCAAGGAAAATTA+TGG - tig0020402:2247-2266 Msa1380720:intron 35.0%
TGAGTTTGAGAACTTAGACA+TGG - tig0020402:2469-2488 Msa1380720:CDS 35.0%
! CAAATTCTTTTCCCACAAGA+TGG + tig0020402:2519-2538 None:intergenic 35.0%
CATCTTGTGGGAAAAGAATT+TGG - tig0020402:2517-2536 Msa1380720:CDS 35.0%
GACTTGTATGTGGAAAACAA+TGG - tig0020402:2610-2629 Msa1380720:intron 35.0%
TATTGTATTCAGCATTGCAC+AGG + tig0020402:2680-2699 None:intergenic 35.0%
ATTACCCTTGAATTTCTCAG+AGG + tig0020402:2813-2832 None:intergenic 35.0%
GACAATCTTGTGAAGTTTCT+TGG - tig0020402:2853-2872 Msa1380720:intron 35.0%
TTTATGCTTGTCCTGCTTAT+AGG - tig0020402:2900-2919 Msa1380720:intron 35.0%
TTGACATCTATGTATGAGTC+TGG + tig0020402:2951-2970 None:intergenic 35.0%
GTCAAAAATAAAGACTACGG+AGG - tig0020402:2966-2985 Msa1380720:intron 35.0%
TTAGGTGACAAGTACATCAA+CGG - tig0020402:3077-3096 Msa1380720:intron 35.0%
!!! TGCGTTTTGGTTGATAAGTA+GGG + tig0020402:3124-3143 None:intergenic 35.0%
CAAATGAACTTCCATCTCAA+AGG + tig0020402:3422-3441 None:intergenic 35.0%
ATGTGATTAACAACATGCAC+GGG + tig0020402:3506-3525 None:intergenic 35.0%
GATGTGATTAACAACATGCA+CGG + tig0020402:3507-3526 None:intergenic 35.0%
CAAAACTGAAAATCACCTGA+AGG + tig0020402:3572-3591 None:intergenic 35.0%
GGCATGTCACAAATTATCTT+AGG - tig0020402:3737-3756 Msa1380720:CDS 35.0%
GAACACATAAAGTGACTGAT+AGG - tig0020402:3846-3865 Msa1380720:CDS 35.0%
!! CAATGTGCATATTTAGCTCT+AGG - tig0020402:3889-3908 Msa1380720:CDS 35.0%
!! ATATTTAGCTCTAGGTGTCA+TGG - tig0020402:3897-3916 Msa1380720:CDS 35.0%
GTTACTCATGATACCCATAT+AGG + tig0020402:3998-4017 None:intergenic 35.0%
! TAGGTTAGGGTTAGGGTTTT+GGG + tig0020402:1275-1294 None:intergenic 40.0%
! ATAGGTTAGGGTTAGGGTTT+TGG + tig0020402:1276-1295 None:intergenic 40.0%
!!! GGTTTTGGGATGATAGGTTA+GGG + tig0020402:1288-1307 None:intergenic 40.0%
! GAAGTTGAAACTTGGGGTTT+TGG + tig0020402:1303-1322 None:intergenic 40.0%
GGTTTGGATTTGATAGAGAG+AGG + tig0020402:1329-1348 None:intergenic 40.0%
TTGAATTCGGATAGGGTTTC+GGG + tig0020402:1357-1376 None:intergenic 40.0%
CTTGAATTCGGATAGGGTTT+CGG + tig0020402:1358-1377 None:intergenic 40.0%
AGAGAGACAATTATGCTACC+TGG - tig0020402:1428-1447 Msa1380720:three_prime_UTR 40.0%
TGTAGTTGTTTGTAGGCACA+TGG - tig0020402:1672-1691 Msa1380720:three_prime_UTR 40.0%
GTAGTTGTTTGTAGGCACAT+GGG - tig0020402:1673-1692 Msa1380720:three_prime_UTR 40.0%
! TTTGTAGGCACATGGGTTTT+GGG - tig0020402:1680-1699 Msa1380720:three_prime_UTR 40.0%
ACCGAAGACAAGACATGATT+AGG - tig0020402:2085-2104 Msa1380720:CDS 40.0%
!! TAGTCTCGTTTTAGGTGGTT+TGG - tig0020402:2147-2166 Msa1380720:CDS 40.0%
!! GACCTATAGAAGTATCCTTG+AGG - tig0020402:2183-2202 Msa1380720:intron 40.0%
TTAGAGACAAGTTGTGACCA+AGG - tig0020402:2237-2256 Msa1380720:intron 40.0%
! GCTTGGACCATAATTTTCCT+TGG + tig0020402:2257-2276 None:intergenic 40.0%
! TGAAACCTTTCTAGAAGGCT+TGG + tig0020402:2274-2293 None:intergenic 40.0%
CATACTACATGGATCACATG+AGG + tig0020402:2343-2362 None:intergenic 40.0%
TGATCCATGTAGTATGTCTC+TGG - tig0020402:2347-2366 Msa1380720:intron 40.0%
CATGTAGTATGTCTCTGGTA+GGG - tig0020402:2352-2371 Msa1380720:intron 40.0%
ATGGAACCTAACAACCTAGT+AGG - tig0020402:2488-2507 Msa1380720:CDS 40.0%
TGGAACCTAACAACCTAGTA+GGG - tig0020402:2489-2508 Msa1380720:CDS 40.0%
!! GGTTGGTGAATGGTATACAA+TGG - tig0020402:2562-2581 Msa1380720:intron 40.0%
TTTGTGGTTGTGTATCAGCA+TGG - tig0020402:2712-2731 Msa1380720:intron 40.0%
! AGTGTAAGTTGTGGTGCTAA+AGG + tig0020402:2762-2781 None:intergenic 40.0%
TTTAGCACCACAACTTACAC+TGG - tig0020402:2761-2780 Msa1380720:intron 40.0%
CTGAAATCCAGTGTAAGTTG+TGG + tig0020402:2771-2790 None:intergenic 40.0%
! AGCAACCTCTGAGAAATTCA+AGG - tig0020402:2805-2824 Msa1380720:intron 40.0%
! GCAACCTCTGAGAAATTCAA+GGG - tig0020402:2806-2825 Msa1380720:intron 40.0%
TAGGTGACAAGTACATCAAC+GGG - tig0020402:3078-3097 Msa1380720:intron 40.0%
! TGATAAGTAGGGTACTTGCA+AGG + tig0020402:3113-3132 None:intergenic 40.0%
!!! CTGCGTTTTGGTTGATAAGT+AGG + tig0020402:3125-3144 None:intergenic 40.0%
ACTTATCAACCAAAACGCAG+TGG - tig0020402:3125-3144 Msa1380720:intron 40.0%
TCATGTAGAGGATGAATCTG+AGG + tig0020402:3237-3256 None:intergenic 40.0%
TCAGATTCATCCTCTACATG+AGG - tig0020402:3236-3255 Msa1380720:intron 40.0%
!! GAATGGATTACCTCATGTAG+AGG + tig0020402:3249-3268 None:intergenic 40.0%
AAATCCTAACTCTCCCTTGA+CGG + tig0020402:3371-3390 None:intergenic 40.0%
! AGAATGGGATTCCTTTGAGA+TGG - tig0020402:3408-3427 Msa1380720:intron 40.0%
TGAGATGGAAGTTCATTTGC+TGG - tig0020402:3423-3442 Msa1380720:intron 40.0%
GAGATGGAAGTTCATTTGCT+GGG - tig0020402:3424-3443 Msa1380720:intron 40.0%
ACATGCACGGGAAAAACTAA+TGG + tig0020402:3494-3513 None:intergenic 40.0%
!! TTACTTTTGTTGCAGCCTTC+AGG - tig0020402:3554-3573 Msa1380720:intron 40.0%
!! TTGATAATGCCGCGTGATTA+AGG + tig0020402:3628-3647 None:intergenic 40.0%
TGAGATGTAAGACTGGTGTT+AGG - tig0020402:3791-3810 Msa1380720:CDS 40.0%
! GAGATGTAAGACTGGTGTTA+GGG - tig0020402:3792-3811 Msa1380720:CDS 40.0%
ACTTGTATGCTTATCATGGC+TGG + tig0020402:3935-3954 None:intergenic 40.0%
! AGGTTAGGGTTAGGGTTTTG+GGG + tig0020402:1274-1293 None:intergenic 45.0%
GGGATGATAGGTTAGGGTTA+GGG + tig0020402:1282-1301 None:intergenic 45.0%
TGGGATGATAGGTTAGGGTT+AGG + tig0020402:1283-1302 None:intergenic 45.0%
!!! GGGTTTTGGGATGATAGGTT+AGG + tig0020402:1289-1308 None:intergenic 45.0%
!!! ACTTGGGGTTTTGGGATGAT+AGG + tig0020402:1294-1313 None:intergenic 45.0%
TCAATCATTTGCTCGCGAGA+GGG + tig0020402:1506-1525 None:intergenic 45.0%
ATCAATCATTTGCTCGCGAG+AGG + tig0020402:1507-1526 None:intergenic 45.0%
TCAAACTCTTGCCACTGTCT+TGG - tig0020402:1535-1554 Msa1380720:three_prime_UTR 45.0%
CAAACTCTTGCCACTGTCTT+GGG - tig0020402:1536-1555 Msa1380720:three_prime_UTR 45.0%
ATAGAACCTTCCCAAGACAG+TGG + tig0020402:1549-1568 None:intergenic 45.0%
! GTTTGTAGGCACATGGGTTT+TGG - tig0020402:1679-1698 Msa1380720:three_prime_UTR 45.0%
! TTGTAGGCACATGGGTTTTG+GGG - tig0020402:1681-1700 Msa1380720:three_prime_UTR 45.0%
!!! GGTTTTGGGGTTAGGGAATT+GGG - tig0020402:1694-1713 Msa1380720:intron 45.0%
!!! GTTTTGGGGTTAGGGAATTG+GGG - tig0020402:1695-1714 Msa1380720:intron 45.0%
!! TACGGTAGTCTCGTTTTAGG+TGG - tig0020402:2142-2161 Msa1380720:CDS 45.0%
CATTTGGTCTACCATCCTCA+AGG + tig0020402:2201-2220 None:intergenic 45.0%
! ATGGTCCAAGCCTTCTAGAA+AGG - tig0020402:2266-2285 Msa1380720:intron 45.0%
CCTACCAGAGACATACTACA+TGG + tig0020402:2354-2373 None:intergenic 45.0%
CCATGTAGTATGTCTCTGGT+AGG - tig0020402:2351-2370 Msa1380720:intron 45.0%
TAGTATGTCTCTGGTAGGGT+GGG - tig0020402:2356-2375 Msa1380720:intron 45.0%
TCTCAAACTCACGTCTAGAG+TGG + tig0020402:2460-2479 None:intergenic 45.0%
! TTTTGTGGGGGACTTGTATG+TGG - tig0020402:2600-2619 Msa1380720:intron 45.0%
AGGTGACAAGTACATCAACG+GGG - tig0020402:3079-3098 Msa1380720:intron 45.0%
! CTCTTTGATCCACTGCGTTT+TGG + tig0020402:3137-3156 None:intergenic 45.0%
GATCAAAGAGTGACGGTAGA+AGG - tig0020402:3147-3166 Msa1380720:intron 45.0%
! ACGGTAGAAGGTATGAGAGA+CGG - tig0020402:3159-3178 Msa1380720:intron 45.0%
! TAGAAGGTATGAGAGACGGA+GGG - tig0020402:3163-3182 Msa1380720:intron 45.0%
TGCTGGAACAGAGAATGGAA+TGG + tig0020402:3266-3285 None:intergenic 45.0%
TTCCATTCTCTGTTCCAGCA+TGG - tig0020402:3266-3285 Msa1380720:intron 45.0%
ATCCATGCTGGAACAGAGAA+TGG + tig0020402:3271-3290 None:intergenic 45.0%
TGTTCCAGCATGGATGTTAC+TGG - tig0020402:3276-3295 Msa1380720:intron 45.0%
AAGACCAGTAACATCCATGC+TGG + tig0020402:3283-3302 None:intergenic 45.0%
AATCCTAACTCTCCCTTGAC+GGG + tig0020402:3370-3389 None:intergenic 45.0%
TGGAGCTTCACAGAACAGTT+GGG + tig0020402:3474-3493 None:intergenic 45.0%
ATGGAGCTTCACAGAACAGT+TGG + tig0020402:3475-3494 None:intergenic 45.0%
!! GGAGGAACGATCCTTTGTTT+TGG + tig0020402:3607-3626 None:intergenic 45.0%
ATCGTTCCTCCTTAATCACG+CGG - tig0020402:3616-3635 Msa1380720:intron 45.0%
ATAATGCCGCGTGATTAAGG+AGG + tig0020402:3625-3644 None:intergenic 45.0%
TATGGGTTTGAGCAGCTTCT+AGG + tig0020402:3663-3682 None:intergenic 45.0%
!!! TATTATTTTAAATAAAAAGT+TGG - tig0020402:2541-2560 Msa1380720:intron 5.0%
!! GGTTAGGGTTAGGGTTTTGG+GGG + tig0020402:1273-1292 None:intergenic 50.0%
AGGGTTTCGGGAATTGGGTT+TGG + tig0020402:1345-1364 None:intergenic 50.0%
CGGATAGGGTTTCGGGAATT+GGG + tig0020402:1350-1369 None:intergenic 50.0%
TCGGATAGGGTTTCGGGAAT+TGG + tig0020402:1351-1370 None:intergenic 50.0%
!!! GCACATGGGTTTTGGGGTTA+GGG - tig0020402:1687-1706 Msa1380720:three_prime_UTR 50.0%
!!! GGGTTTTGGGGTTAGGGAAT+TGG - tig0020402:1693-1712 Msa1380720:intron 50.0%
GTAGTATGTCTCTGGTAGGG+TGG - tig0020402:2355-2374 Msa1380720:intron 50.0%
GTCCTGCTTATAGGTTTGCC+TGG - tig0020402:2909-2928 Msa1380720:intron 50.0%
CACCAGGCAAACCTATAAGC+AGG + tig0020402:2914-2933 None:intergenic 50.0%
TAGGTTTGCCTGGTGTTCTC+TGG - tig0020402:2919-2938 Msa1380720:intron 50.0%
AGGTTTGCCTGGTGTTCTCT+GGG - tig0020402:2920-2939 Msa1380720:intron 50.0%
CGCAGTGGATCAAAGAGTGA+CGG - tig0020402:3140-3159 Msa1380720:intron 50.0%
! GTAGAAGGTATGAGAGACGG+AGG - tig0020402:3162-3181 Msa1380720:intron 50.0%
GCTGTCTCTTGTCTTGGCTT+TGG + tig0020402:3212-3231 None:intergenic 50.0%
TCATGGCTTACTTCCCGTCA+AGG - tig0020402:3354-3373 Msa1380720:intron 50.0%
CATGGCTTACTTCCCGTCAA+GGG - tig0020402:3355-3374 Msa1380720:intron 50.0%
GGAGCTTCACAGAACAGTTG+GGG + tig0020402:3473-3492 None:intergenic 50.0%
TTTGGGGGAGAGGGTGAAAG+AGG + tig0020402:1258-1277 None:intergenic 55.0%
!!! GGTTAGGGTTTTGGGGGAGA+GGG + tig0020402:1267-1286 None:intergenic 55.0%
CTCTTGCCACTGTCTTGGGA+AGG - tig0020402:1540-1559 Msa1380720:three_prime_UTR 55.0%
!!! GGCACATGGGTTTTGGGGTT+AGG - tig0020402:1686-1705 Msa1380720:three_prime_UTR 55.0%
GGACGCCCTACTAGGTTGTT+AGG + tig0020402:2497-2516 None:intergenic 55.0%
ACAAGATGGGACGCCCTACT+AGG + tig0020402:2505-2524 None:intergenic 55.0%
! TAGTAGGGCGTCCCATCTTG+TGG - tig0020402:2504-2523 Msa1380720:CDS 55.0%
! AGTAGGGCGTCCCATCTTGT+GGG - tig0020402:2505-2524 Msa1380720:CDS 55.0%
!! GGAAGTACCCAGAGAACACC+AGG + tig0020402:2930-2949 None:intergenic 55.0%
AGGTATGAGAGACGGAGGGA+TGG - tig0020402:3167-3186 Msa1380720:intron 55.0%
GAGGCAGCTGTCTCTTGTCT+TGG + tig0020402:3218-3237 None:intergenic 55.0%
CTTCCCGTCAAGGGAGAGTT+AGG - tig0020402:3364-3383 Msa1380720:intron 55.0%
!!! GGGTTAGGGTTTTGGGGGAG+AGG + tig0020402:1268-1287 None:intergenic 60.0%
! CGAGAGGGTGCAGGATCCTT+GGG + tig0020402:1491-1510 None:intergenic 60.0%
! ATTTGCTCGCGAGAGGGTGC+AGG + tig0020402:1500-1519 None:intergenic 60.0%
GTCTCTGGTAGGGTGGGCAT+TGG - tig0020402:2362-2381 Msa1380720:intron 60.0%
! GCGAGAGGGTGCAGGATCCT+TGG + tig0020402:1492-1511 None:intergenic 65.0%
TTGGACGCCCAGCAGCAGGA+GGG + tig0020402:3193-3212 None:intergenic 65.0%
TTTGGACGCCCAGCAGCAGG+AGG + tig0020402:3194-3213 None:intergenic 65.0%
AGGGATGGCCCTCCTGCTGC+TGG - tig0020402:3182-3201 Msa1380720:intron 70.0%
GGGATGGCCCTCCTGCTGCT+GGG - tig0020402:3183-3202 Msa1380720:intron 70.0%
!! GGCTTTGGACGCCCAGCAGC+AGG + tig0020402:3197-3216 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0020402 gene 1183 4096 1183 ID=Msa1380720;Name=Msa1380720
tig0020402 mRNA 1183 4096 1183 ID=Msa1380720-mRNA-1;Parent=Msa1380720;Name=Msa1380720-mRNA-1;_AED=0.05;_eAED=0.05;_QI=23|1|1|1|0.75|0.6|5|529|231
tig0020402 exon 1183 1710 1183 ID=Msa1380720-mRNA-1:exon:7218;Parent=Msa1380720-mRNA-1
tig0020402 exon 2022 2198 2022 ID=Msa1380720-mRNA-1:exon:7217;Parent=Msa1380720-mRNA-1
tig0020402 exon 2292 2357 2292 ID=Msa1380720-mRNA-1:exon:7216;Parent=Msa1380720-mRNA-1
tig0020402 exon 2452 2549 2452 ID=Msa1380720-mRNA-1:exon:7215;Parent=Msa1380720-mRNA-1
tig0020402 exon 3718 4096 3718 ID=Msa1380720-mRNA-1:exon:7214;Parent=Msa1380720-mRNA-1
tig0020402 five_prime_UTR 4074 4096 4074 ID=Msa1380720-mRNA-1:five_prime_utr;Parent=Msa1380720-mRNA-1
tig0020402 CDS 3718 4073 3718 ID=Msa1380720-mRNA-1:cds;Parent=Msa1380720-mRNA-1
tig0020402 CDS 2452 2549 2452 ID=Msa1380720-mRNA-1:cds;Parent=Msa1380720-mRNA-1
tig0020402 CDS 2292 2357 2292 ID=Msa1380720-mRNA-1:cds;Parent=Msa1380720-mRNA-1
tig0020402 CDS 2023 2198 2023 ID=Msa1380720-mRNA-1:cds;Parent=Msa1380720-mRNA-1
tig0020402 three_prime_UTR 2022 2022 2022 ID=Msa1380720-mRNA-1:three_prime_utr;Parent=Msa1380720-mRNA-1
tig0020402 three_prime_UTR 1183 1710 1183 ID=Msa1380720-mRNA-1:three_prime_utr;Parent=Msa1380720-mRNA-1
Gene Sequence

>Msa1380720

ATGGCATTGTTACAAACTTGTCTTCCATCTCTCAAAATGGCTACAATTTCCTCTTTCACCCTCTCCCCCAAAACCCTAACCCTAACCTATCATCCCAAAACCCCAAGTTTCAACTTCAATCCTCTCTCTATCAAATCCAAACCCAATTCCCGAAACCCTATCCGAATTCAAGCAGTATTGGATGAAGATTACTCTTCAAAAAGAAGCAGTAGCAATGAACAGAGAGAGACAATTATGCTACCTGGTTGTGATTACAATCATTGGCTTATTGTAATGGAGTTTCCCAAGGATCCTGCACCCTCTCGCGAGCAAATGATTGATACTTATCTTCAAACTCTTGCCACTGTCTTGGGAAGCATGGAAGAAGCTAAGAAGAACATGTATGCCTTTAGCACCACAACTTACACTGGATTTCAGTGCACTGTTGATGAAGCAACCTCTGAGAAATTCAAGGGTTTGCCTGGTGTTCTCTGGGTACTTCCAGACTCATACATAGATGTCAAAAATAAAGACTACGGAGGTGACAAGTACATCAACGGGGAGATAATTCCTTGCAAGTACCCTACTTATCAACCAAAACGCAGTGGATCAAAGAGTGACGGTAGAAGGTATGAGAGACGGAGGGATGGCCCTCCTGCTGCTGGGCGTCCAAAGCCAAGACAAGAGACAGCTGCCTCAGATTCATCCTCTACATGA

Protein sequence

>Msa1380720

MALLQTCLPSLKMATISSFTLSPKTLTLTYHPKTPSFNFNPLSIKSKPNSRNPIRIQAVLDEDYSSKRSSSNEQRETIMLPGCDYNHWLIVMEFPKDPAPSREQMIDTYLQTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVDEATSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYINGEIIPCKYPTYQPKRSGSKSDGRRYERRRDGPPAAGRPKPRQETAASDSSST*