AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0358290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0358290 MtrunA17_Chr3g0116171 85.522 967 32 5 1 959 1 867 0.0 1627
Msa0358290 MtrunA17_Chr4g0057731 74.830 735 121 6 43 765 2 684 0.0 1089
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0358290 AT5G63420.1 65.491 907 219 11 80 958 71 911 0.0 1132

Find 239 sgRNAs with CRISPR-Local

Find 599 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAGACATTTACACATTTA+TGG 0.143360 3_1:-43056777 None:intergenic
TCCAAAAGATGCAAGATTTA+AGG 0.149877 3_1:-43052393 None:intergenic
GCCTTAAATCTTGCATCTTT+TGG 0.181875 3_1:+43052392 Msa0358290:CDS
TTGGCTGGAAACACCTTAAA+AGG 0.186376 3_1:+43053870 Msa0358290:CDS
TATTTGTTGGCATGTCTTTA+AGG 0.202740 3_1:+43051319 Msa0358290:CDS
CAGGGGAATCGGATGAATTT+TGG 0.207468 3_1:+43055028 Msa0358290:CDS
GGGCAGAATAAGAAATATTT+TGG 0.234453 3_1:+43056405 Msa0358290:three_prime_UTR
CAAATCTTTGTGGACATCTT+TGG 0.240355 3_1:+43055407 Msa0358290:CDS
CCTTAGCCCTAAAAGAATTA+TGG 0.243849 3_1:-43056551 None:intergenic
ATCCATGGATGAACATAAAA+AGG 0.267555 3_1:+43054184 Msa0358290:CDS
ATTGGTGGTTTGGGTGAAAT+TGG 0.278425 3_1:+43048285 Msa0358290:CDS
GATTCACTGGTTGTCCTTCC+AGG 0.285382 3_1:-43051061 None:intergenic
CAAGTGATTCATGCTCCTTC+AGG 0.286343 3_1:-43053318 None:intergenic
TTTCTTATAAATGTTGTATC+AGG 0.286634 3_1:-43048694 None:intergenic
CCATTACGTGTTCTTCCTAT+TGG 0.296621 3_1:+43048267 Msa0358290:CDS
GAAGGCGATTTATCTGATTC+AGG 0.300145 3_1:+43055009 Msa0358290:CDS
AAAGCTGCTGCCGATTTAAC+TGG 0.300725 3_1:+43051181 Msa0358290:CDS
ATACAACATTTATAAGAAAA+TGG 0.305949 3_1:+43048698 Msa0358290:CDS
CCTTGGAAAAGAAAATTTAC+AGG 0.307438 3_1:+43053551 Msa0358290:CDS
AAGGTAATAGGCAACATAAA+AGG 0.316546 3_1:+43056570 Msa0358290:three_prime_UTR
TCCGCATCAGACATTTCTTT+TGG 0.317583 3_1:-43055204 None:intergenic
CTATCAAGGGAAAGAGTATA+TGG 0.320547 3_1:+43056622 Msa0358290:three_prime_UTR
ATCCATCATTTACATGGTTC+TGG 0.325333 3_1:+43056499 Msa0358290:three_prime_UTR
GGGAGTGAGGAAGTGGAGGG+AGG 0.340603 3_1:-43047933 None:intergenic
TGTAGGCAAGTCACTGGTTA+TGG 0.341707 3_1:+43051575 Msa0358290:CDS
GAGAGGAGGGAGTGAGGAAG+TGG 0.344758 3_1:-43047940 None:intergenic
GATGTAGATTTGATGCAAAC+TGG 0.345615 3_1:-43051144 None:intergenic
GTGAGGAAGTGGAGGGAGGG+TGG 0.347780 3_1:-43047929 None:intergenic
ATGTAATGGAAATATCTAAT+TGG 0.351219 3_1:+43048094 Msa0358290:CDS
TGAAAGGAAGGATGGCTCTC+TGG 0.354049 3_1:+43055328 Msa0358290:CDS
CTTCTAAATGTTGATATTCC+AGG 0.354594 3_1:-43054161 None:intergenic
AATAGAAGGGTTCTTTCTAA+TGG 0.365515 3_1:+43053519 Msa0358290:CDS
TGTTCTTCCTATTGGTGGTT+TGG 0.367711 3_1:+43048275 Msa0358290:CDS
ATTTCCATTCAATTTGTTGC+CGG 0.369154 3_1:-43056377 None:intergenic
ATCTTTGGCACTTAAATATG+AGG 0.370175 3_1:+43055422 Msa0358290:CDS
CGGAGGGAGAGGAGGGAGTG+AGG 0.374912 3_1:-43047946 None:intergenic
ATCATATCGGTGCGTTGCCT+TGG 0.376836 3_1:+43048764 Msa0358290:CDS
TTATTATATCAGGTATTTGT+TGG 0.378839 3_1:+43051306 Msa0358290:intron
ATCGCAATGGCAATTACTTC+GGG 0.381041 3_1:-43054071 None:intergenic
GTTCTTCCTATTGGTGGTTT+GGG 0.382494 3_1:+43048276 Msa0358290:CDS
TTTCACACTTGAGAAATAGA+AGG 0.384172 3_1:+43053505 Msa0358290:CDS
GCATTTATTACCAGAGTTGA+TGG 0.385749 3_1:-43051387 None:intergenic
ATGCACCAGGTTATTAAGAA+TGG 0.386575 3_1:+43053468 Msa0358290:intron
TTGTTTGCAGTGTGGTGGAC+TGG 0.387215 3_1:-43054211 None:intergenic
TTCCCTTGATAGCTTAGCTT+GGG 0.391980 3_1:-43056611 None:intergenic
CAACTTTCTCCCAGTTAAAT+CGG 0.401807 3_1:-43051191 None:intergenic
TGAATCTCCTGTTGCTGAAA+AGG 0.403407 3_1:+43050320 Msa0358290:CDS
CTAGTTCTTCGTTGTTCTGA+TGG 0.406463 3_1:+43050220 Msa0358290:CDS
TAGATGGCATCATTGTGATT+AGG 0.412496 3_1:+43053737 Msa0358290:CDS
AATGAAAACTTACACACATC+TGG 0.415170 3_1:+43052751 Msa0358290:CDS
AGAATGAGAATTGCATTAGA+TGG 0.417290 3_1:+43053721 Msa0358290:CDS
TAACCCAAGCTAAGCTATCA+AGG 0.419408 3_1:+43056608 Msa0358290:three_prime_UTR
ATTGGATCAACAATAGTTAT+GGG 0.421279 3_1:+43052724 Msa0358290:CDS
GGCAAATCCCACGTTGGTCC+TGG 0.424025 3_1:+43054143 Msa0358290:CDS
GATTGGATCAACAATAGTTA+TGG 0.427638 3_1:+43052723 Msa0358290:CDS
TTTCCCTTGATAGCTTAGCT+TGG 0.427851 3_1:-43056612 None:intergenic
TTTAGAGCGGAGGGAGAGGA+GGG 0.428100 3_1:-43047953 None:intergenic
AGGAGGGAGTGAGGAAGTGG+AGG 0.430363 3_1:-43047937 None:intergenic
CTATTCTTCACACTGGGGAT+TGG 0.430987 3_1:+43050245 Msa0358290:CDS
ATCACACGGGACTCATTACC+AGG 0.431628 3_1:-43052676 None:intergenic
GTTTAGAGCGGAGGGAGAGG+AGG 0.436100 3_1:-43047954 None:intergenic
GAATTACCACAAGATGTCTA+TGG 0.437596 3_1:+43053901 Msa0358290:CDS
GGAGTGAGGAAGTGGAGGGA+GGG 0.438173 3_1:-43047932 None:intergenic
GAGAAAGAGACCACTACAAC+TGG 0.440855 3_1:+43054982 Msa0358290:CDS
CATTTGAGATAGAACCAATC+AGG 0.444198 3_1:+43050167 Msa0358290:CDS
CTGGACAATGCAAATCTTTG+TGG 0.444645 3_1:+43055397 Msa0358290:CDS
ACATGCATATCGTGGAGAAT+TGG 0.445598 3_1:+43052774 Msa0358290:CDS
GAATCACTTGGAAAATCAAC+TGG 0.447489 3_1:+43053331 Msa0358290:CDS
TCTAATGGTTTCATTTCCCT+TGG 0.447711 3_1:+43053534 Msa0358290:CDS
TATCGCAATGGCAATTACTT+CGG 0.447759 3_1:-43054072 None:intergenic
ACCAGAGTTGATGGGTCAAA+TGG 0.450689 3_1:-43051378 None:intergenic
TCATATCGGTGCGTTGCCTT+GGG 0.452996 3_1:+43048765 Msa0358290:CDS
TTACGTGTTCTTCCTATTGG+TGG 0.453954 3_1:+43048270 Msa0358290:CDS
GAGATAAACACAAAATTGTC+TGG 0.454789 3_1:+43054122 Msa0358290:CDS
TTTATCTGATTCAGGGGAAT+CGG 0.455159 3_1:+43055017 Msa0358290:CDS
AGTGATGGTGACAAAGCATT+TGG 0.457642 3_1:+43053670 Msa0358290:CDS
ATCAGACATTTCTTCAGACT+TGG 0.457953 3_1:-43055166 None:intergenic
CTGATTGGTTCTATCTCAAA+TGG 0.459887 3_1:-43050166 None:intergenic
ACTATGCTGTTATCATGTAA+TGG 0.461236 3_1:+43048080 Msa0358290:CDS
ATTTCACCCAAACCACCAAT+AGG 0.461698 3_1:-43048282 None:intergenic
ATTGACGAGACACCACTTGA+TGG 0.463031 3_1:+43050355 Msa0358290:CDS
GTTACAATAAGCAGATCCTT+AGG 0.463234 3_1:-43052242 None:intergenic
TCAACTGATGATGCAATGAA+TGG 0.463811 3_1:-43055054 None:intergenic
GATCTGCTTATTGTAACAAC+TGG 0.465028 3_1:+43052248 Msa0358290:CDS
TCAACAAATGTGCTCTCACC+TGG 0.467892 3_1:+43051043 Msa0358290:CDS
GATGGGATCAGCAGAAGTCC+TGG 0.469354 3_1:+43055378 Msa0358290:CDS
CTTAGCTTGGGTTAGAATCA+AGG 0.471830 3_1:-43056599 None:intergenic
CCTTGGTAAGTTTGAAAGCA+TGG 0.473674 3_1:-43052421 None:intergenic
ATGAATCGCATATCAGAGAT+TGG 0.474239 3_1:+43052706 Msa0358290:CDS
TCTAATCAGGAGATCAAGAA+TGG 0.475221 3_1:+43056287 Msa0358290:intron
CGATTTAACTGGGAGAAAGT+TGG 0.476469 3_1:+43051192 Msa0358290:CDS
AATCAGCTTCTTGACTTCCT+CGG 0.476513 3_1:-43055268 None:intergenic
ATTGGGCCGTGGGCGTGTAT+TGG 0.478092 3_1:-43056674 None:intergenic
CTCAGAGCTTGTTGGCTGAT+GGG 0.478275 3_1:+43055361 Msa0358290:CDS
CACAAAGATTTGCATTGTCC+AGG 0.480128 3_1:-43055396 None:intergenic
TCTCAGAGCTTGTTGGCTGA+TGG 0.481622 3_1:+43055360 Msa0358290:CDS
ATAGAATGAGTCACCCTGAT+TGG 0.482517 3_1:-43050181 None:intergenic
TTTCAGCAACAGGAGATTCA+AGG 0.483127 3_1:-43050317 None:intergenic
GTTCTGGTAACATGGACAAT+TGG 0.483222 3_1:+43056515 Msa0358290:three_prime_UTR
TGAAGCTGAAACGGAGAGTC+TGG 0.484052 3_1:-43047980 None:intergenic
TTGGAAAATCAACTGGCATT+CGG 0.486197 3_1:+43053338 Msa0358290:CDS
TCATCAGGTCATCCCAGCAT+TGG 0.486824 3_1:+43049737 Msa0358290:intron
ATACAAAACAATATCTTCCT+TGG 0.488079 3_1:-43052438 None:intergenic
TCAAGAAGCTGATTGATTTG+CGG 0.490229 3_1:+43055277 Msa0358290:CDS
CAATTCTCATTCTTTCATCA+AGG 0.490742 3_1:-43053711 None:intergenic
GACAAAGCATTTGGTACATC+CGG 0.492657 3_1:+43053679 Msa0358290:CDS
ACAAAGAACAAGTTTGTCGC+TGG 0.495185 3_1:+43050142 Msa0358290:CDS
TTGGTTTAGAGCGGAGGGAG+AGG 0.497199 3_1:-43047957 None:intergenic
GATGTCTATGGCTGGACAAA+GGG 0.497228 3_1:+43053913 Msa0358290:CDS
AAGGCGATTTATCTGATTCA+GGG 0.497243 3_1:+43055010 Msa0358290:CDS
AGGTAATAGGCAACATAAAA+GGG 0.497500 3_1:+43056571 Msa0358290:three_prime_UTR
CAAAAGTCCACTGGCTCACA+TGG 0.497633 3_1:+43053992 Msa0358290:CDS
CATACAACATTGATAGTCAT+AGG 0.497973 3_1:+43056812 Msa0358290:three_prime_UTR
CATTCTATTCCTGACTGTTG+TGG 0.499925 3_1:+43050196 Msa0358290:CDS
GTCTGGTTGGTTTAGAGCGG+AGG 0.502579 3_1:-43047963 None:intergenic
ACCTCTTGTTTGCAGTGTGG+TGG 0.502821 3_1:-43054216 None:intergenic
TTAGAAGCAGCTTGGAAGGA+TGG 0.505273 3_1:+43051348 Msa0358290:CDS
AGGCACATTTCAGCTTCAAA+AGG 0.507331 3_1:+43051106 Msa0358290:CDS
CTAGAGTACCACACAAAAGA+AGG 0.508431 3_1:+43048160 Msa0358290:CDS
GATTTAAAGTTGTGAAAGGA+AGG 0.508605 3_1:+43055316 Msa0358290:CDS
GAAAGGAAGGATGGCTCTCT+GGG 0.509095 3_1:+43055329 Msa0358290:CDS
TGAGAGTGTTGAAGCTGAAA+CGG 0.509651 3_1:-43047989 None:intergenic
ACATTTCAGCTTCAAAAGGA+AGG 0.510397 3_1:+43051110 Msa0358290:CDS
TTTACATGGTTCTGGTAACA+TGG 0.510579 3_1:+43056507 Msa0358290:three_prime_UTR
AAAAGAAGGAGAAGAATTGA+AGG 0.511278 3_1:+43048174 Msa0358290:CDS
CTGAAGGAGCATGAATCACT+TGG 0.511676 3_1:+43053319 Msa0358290:CDS
GGAGGGAGTGAGGAAGTGGA+GGG 0.514224 3_1:-43047936 None:intergenic
GCTTCAACACTCTCAGCCTC+TGG 0.517741 3_1:+43047997 Msa0358290:CDS
AACACCGGCAACAAATTGAA+TGG 0.517785 3_1:+43056373 Msa0358290:exon
AACAAGTATTCTCCATGTAC+AGG 0.517823 3_1:-43053295 None:intergenic
TGGCTGGAAACACCTTAAAA+GGG 0.519920 3_1:+43053871 Msa0358290:CDS
AATGCACGAGTAGGAAATGA+TGG 0.520317 3_1:+43048129 Msa0358290:CDS
AGAGATATCTCAGAGCTTGT+TGG 0.522256 3_1:+43055353 Msa0358290:CDS
TACCAGAACCATGTAAATGA+TGG 0.525460 3_1:-43056501 None:intergenic
TGCATCTTCCTTTACAATGG+AGG 0.526281 3_1:+43049779 Msa0358290:CDS
TATTGATGCTTATGCACCTA+AGG 0.528326 3_1:+43052226 Msa0358290:CDS
GACAGATTTAAAGTTGTGAA+AGG 0.528331 3_1:+43055312 Msa0358290:CDS
CAAGTCTGAGCTAGGTGACC+AGG 0.529734 3_1:+43056470 Msa0358290:three_prime_UTR
GCATCAAATCTACATCGGAT+TGG 0.529989 3_1:+43051151 Msa0358290:CDS
TTCATCAAGGAAGAGTTCAC+CGG 0.530019 3_1:-43053698 None:intergenic
TCAATTTGTCAGGTTATCCC+TGG 0.531224 3_1:+43052658 Msa0358290:intron
GGACATACTTAGAAGCAGCT+TGG 0.532316 3_1:+43051340 Msa0358290:CDS
ATCAACATTTAGAAGATCCA+TGG 0.532606 3_1:+43054169 Msa0358290:CDS
TTGACGAGACACCACTTGAT+GGG 0.533040 3_1:+43050356 Msa0358290:CDS
TAAATGATGGATTATCATCC+TGG 0.533252 3_1:-43056488 None:intergenic
TCCATTTGACCCATCAACTC+TGG 0.534282 3_1:+43051377 Msa0358290:CDS
AGAACTAGTCCACAACAGTC+AGG 0.535143 3_1:-43050205 None:intergenic
TACCACAAGATGTCTATGGC+TGG 0.535188 3_1:+43053905 Msa0358290:CDS
TCTTCACACTGGGGATTGGA+AGG 0.536502 3_1:+43050249 Msa0358290:CDS
ATGATAATCCATCATTTACA+TGG 0.537258 3_1:+43056493 Msa0358290:three_prime_UTR
CATGGTCATGAAGATCATAT+CGG 0.538341 3_1:+43048751 Msa0358290:CDS
GGTGTATTGGAATCCAATGC+TGG 0.538955 3_1:-43049750 None:intergenic
ATAGGCAACATAAAAGGGAT+TGG 0.539493 3_1:+43056576 Msa0358290:three_prime_UTR
GCCGAATACCTCCATTGTAA+AGG 0.539763 3_1:-43049787 None:intergenic
TAAAGTTGTGAAAGGAAGGA+TGG 0.540086 3_1:+43055320 Msa0358290:CDS
ATCTGCCACAACAGATTCAC+TGG 0.540628 3_1:-43051074 None:intergenic
TTGTGGCAGATTCATTATTG+AGG 0.541904 3_1:+43051086 Msa0358290:CDS
AGATTCTGTTCAACGTAGGA+TGG 0.542555 3_1:+43048215 Msa0358290:CDS
ATTAAGAATGGAGAGATGCT+TGG 0.543149 3_1:+43053480 Msa0358290:CDS
ATACTTAGAAGCAGCTTGGA+AGG 0.544162 3_1:+43051344 Msa0358290:CDS
TTAGAGGAACTCTCTAAAGA+AGG 0.550937 3_1:+43050400 Msa0358290:CDS
CAAAGAACAAGTTTGTCGCT+GGG 0.552337 3_1:+43050143 Msa0358290:CDS
CATTTCAGCTTCAAAAGGAA+GGG 0.552543 3_1:+43051111 Msa0358290:CDS
TCTGGTTGGTTTAGAGCGGA+GGG 0.552825 3_1:-43047962 None:intergenic
GCCATTGCGATAGAAAATCC+TGG 0.555157 3_1:+43054083 Msa0358290:CDS
CTAATCAGGAGATCAAGAAT+GGG 0.558723 3_1:+43056288 Msa0358290:intron
CTGTCCCGTCAAAAGTCCAC+TGG 0.559295 3_1:+43053983 Msa0358290:CDS
CATTTATTACCAGAGTTGAT+GGG 0.561091 3_1:-43051386 None:intergenic
GTCGGAGATGTTGAGGAAGA+TGG 0.562067 3_1:+43054025 Msa0358290:CDS
TCACAACTTTAAATCTGTCA+CGG 0.562346 3_1:-43055308 None:intergenic
TATCAAGGGAAAGAGTATAT+GGG 0.563013 3_1:+43056623 Msa0358290:three_prime_UTR
AGATGTTGAGGAAGATGGTG+AGG 0.567241 3_1:+43054030 Msa0358290:CDS
TTGGCAATATCTTGAGGACA+TGG 0.567651 3_1:+43056328 Msa0358290:CDS
GAACTGTGTCGGAGATGTTG+AGG 0.569522 3_1:+43054018 Msa0358290:CDS
ATGGAACTATTCTTCACACT+GGG 0.571280 3_1:+43050239 Msa0358290:CDS
GTCCAGCCATAGACATCTTG+TGG 0.573025 3_1:-43053907 None:intergenic
ACCACTACAACTGGAGCTGA+AGG 0.573383 3_1:+43054991 Msa0358290:CDS
CTCTAAAGAAGGAGTAACAT+TGG 0.574233 3_1:+43050411 Msa0358290:CDS
TTCACACTTGAGAAATAGAA+GGG 0.575027 3_1:+43053506 Msa0358290:CDS
AATGACCACAAGTCTGAGCT+AGG 0.576602 3_1:+43056462 Msa0358290:three_prime_UTR
CAAATTGAATGGAAATGCGG+TGG 0.578525 3_1:+43056384 Msa0358290:exon
GCTGAAACGGAGAGTCTGGT+TGG 0.581128 3_1:-43047976 None:intergenic
GGTCACCTAGCTCAGACTTG+TGG 0.581524 3_1:-43056467 None:intergenic
AGATGTCTATGGCTGGACAA+AGG 0.582028 3_1:+43053912 Msa0358290:CDS
CAATGGTTATGTTTCACGAA+AGG 0.585188 3_1:+43055095 Msa0358290:CDS
AACCCAAGCTAAGCTATCAA+GGG 0.588882 3_1:+43056609 Msa0358290:three_prime_UTR
GCCTTCAGCTCCAGTTGTAG+TGG 0.589034 3_1:-43054992 None:intergenic
GTTCTTTCCATGTGAGCCAG+TGG 0.589970 3_1:-43053999 None:intergenic
AAGCTGCTGCCGATTTAACT+GGG 0.591068 3_1:+43051182 Msa0358290:CDS
TGGTAATGAGTCCCGTGTGA+TGG 0.593761 3_1:+43052678 Msa0358290:CDS
AGTGCATGTAGGCAAGTCAC+TGG 0.598619 3_1:+43051569 Msa0358290:CDS
GGAGATTCAAGGTAAATGAA+AGG 0.599263 3_1:-43050306 None:intergenic
CCAATAGGAAGAACACGTAA+TGG 0.600542 3_1:-43048267 None:intergenic
AGCAGCTTGGAAGGATGGAA+AGG 0.602363 3_1:+43051353 Msa0358290:CDS
TCACATGGAAAGAACTGTGT+CGG 0.607611 3_1:+43054007 Msa0358290:CDS
AGCAGAAATGCAGTGCATGT+AGG 0.607851 3_1:+43051558 Msa0358290:intron
CCATGCTTTCAAACTTACCA+AGG 0.609185 3_1:+43052421 Msa0358290:CDS
GACAACCAGTGAATCTGTTG+TGG 0.610763 3_1:+43051069 Msa0358290:CDS
TCCACCACACTGCAAACAAG+AGG 0.611195 3_1:+43054215 Msa0358290:CDS
GTCTGAAGAAATGTCTGATG+CGG 0.611515 3_1:+43055170 Msa0358290:CDS
GATGATGGCATTGACACAGA+AGG 0.613399 3_1:+43054949 Msa0358290:intron
CAAATGTGCTCTCACCTGGA+AGG 0.615112 3_1:+43051047 Msa0358290:CDS
GATGGAACTATTCTTCACAC+TGG 0.616053 3_1:+43050238 Msa0358290:CDS
AAATTGAATGGAAATGCGGT+GGG 0.618308 3_1:+43056385 Msa0358290:exon
AATATCTTGAGGACATGGAA+AGG 0.619122 3_1:+43056333 Msa0358290:CDS
TCCAAAAGAAATGTCTGATG+CGG 0.621883 3_1:+43055203 Msa0358290:CDS
TGGAGAATACTTGTTCCTGA+AGG 0.627983 3_1:+43053303 Msa0358290:CDS
AGAGTCTGGTTGGTTTAGAG+CGG 0.631106 3_1:-43047966 None:intergenic
AATGTTGTTGTCGCTACCAG+AGG 0.633307 3_1:-43048013 None:intergenic
GTTACCTCTTGTTTGCAGTG+TGG 0.633512 3_1:-43054219 None:intergenic
ATGTAGATTTGATGCAAACT+GGG 0.634137 3_1:-43051143 None:intergenic
TGTAAATGTCTTCTGCGTTG+TGG 0.634999 3_1:+43056786 Msa0358290:three_prime_UTR
GATTCATCATTTCCATCACA+CGG 0.639799 3_1:-43052690 None:intergenic
CAACAAATTGAATGGAAATG+CGG 0.642972 3_1:+43056381 Msa0358290:exon
AAATGTCTTCTGCGTTGTGG+TGG 0.643205 3_1:+43056789 Msa0358290:three_prime_UTR
ATTTGAGATAGAACCAATCA+GGG 0.643383 3_1:+43050168 Msa0358290:CDS
ATTCATCATTTCCATCACAC+GGG 0.645095 3_1:-43052689 None:intergenic
AGGCGATTTATCTGATTCAG+GGG 0.651319 3_1:+43055011 Msa0358290:CDS
ATTGTCTAGTGATGAAACAC+CGG 0.652259 3_1:+43056358 Msa0358290:CDS
GTGTATTGGAATCCAATGCT+GGG 0.657667 3_1:-43049749 None:intergenic
AAATCAATCAAAGCAAACAA+TGG 0.658404 3_1:+43055078 Msa0358290:CDS
TTGGATCAACAATAGTTATG+GGG 0.659409 3_1:+43052725 Msa0358290:CDS
ACATCTGGACATGCATATCG+TGG 0.659861 3_1:+43052766 Msa0358290:CDS
AGTTTGCATCAAATCTACAT+CGG 0.660918 3_1:+43051146 Msa0358290:CDS
TCACATCCAATACACGCCCA+CGG 0.661789 3_1:+43056668 Msa0358290:three_prime_UTR
TGGAAGATTCTGTTCAACGT+AGG 0.664297 3_1:+43048211 Msa0358290:CDS
TTGATATTCCAGGACCAACG+TGG 0.664721 3_1:-43054151 None:intergenic
AAGATGGTGAGGAAGTACAG+TGG 0.672062 3_1:+43054041 Msa0358290:CDS
GAAGCACTTGTTATAACACA+TGG 0.674931 3_1:+43048733 Msa0358290:CDS
TGAGGAAGTACAGTGGTAAG+CGG 0.677242 3_1:+43054048 Msa0358290:CDS
ATGCAGTTGAAATATAGTGA+TGG 0.680617 3_1:+43053655 Msa0358290:intron
GCAAGATTTAAGGCAGCACG+TGG 0.681321 3_1:-43052383 None:intergenic
TGTACAGGAAGAAAATGTTG+CGG 0.705564 3_1:-43053280 None:intergenic
TGATATTCCAGGACCAACGT+GGG 0.714591 3_1:-43054150 None:intergenic
TTGTCTGGCAAATCCCACGT+TGG 0.720381 3_1:+43054137 Msa0358290:CDS
CAACTTTAAATCTGTCACGG+AGG 0.723247 3_1:-43055305 None:intergenic
ATAGGAAGAACACGTAATGG+CGG 0.726743 3_1:-43048264 None:intergenic
TCACACGGGACTCATTACCA+GGG 0.727328 3_1:-43052675 None:intergenic
TGGAACTATTCTTCACACTG+GGG 0.745314 3_1:+43050240 Msa0358290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTAAATATTTTCAATTG+TGG + chr3_1:43050582-43050601 Msa0358290:intron 10.0%
!! ATTTGTATAATTATTATATC+AGG + chr3_1:43051296-43051315 Msa0358290:intron 10.0%
!! ATTATAAATAGTATTATTCT+TGG + chr3_1:43051902-43051921 Msa0358290:intron 10.0%
!! TTATAAATATAAATCACAAA+TGG - chr3_1:43052099-43052118 None:intergenic 10.0%
!!! AAATAAAAATTAGTTTGAAA+AGG - chr3_1:43053122-43053141 None:intergenic 10.0%
!!! AATTTTATTAATTTTGTTAG+TGG + chr3_1:43056741-43056760 Msa0358290:three_prime_UTR 10.0%
!! TAACTTATAGAAAACTATTA+AGG - chr3_1:43048389-43048408 None:intergenic 15.0%
!! ACTTAAACAAATAAAAGTAA+AGG - chr3_1:43048607-43048626 None:intergenic 15.0%
!! ATACAACATTTATAAGAAAA+TGG + chr3_1:43048698-43048717 Msa0358290:CDS 15.0%
!! ACAATTGTTTCATATATAAT+TGG - chr3_1:43049388-43049407 None:intergenic 15.0%
!! AATTATATATGAAACAATTG+TGG + chr3_1:43049387-43049406 Msa0358290:intron 15.0%
!! ATTATATATGAAACAATTGT+GGG + chr3_1:43049388-43049407 Msa0358290:intron 15.0%
!! TCTATTATAGTAAAATTGTA+AGG - chr3_1:43049653-43049672 None:intergenic 15.0%
!!! TATTTTTTCTAACAATACAA+GGG - chr3_1:43050804-43050823 None:intergenic 15.0%
!!! ATATTTTTTCTAACAATACA+AGG - chr3_1:43050805-43050824 None:intergenic 15.0%
!!! TTGATTTATTAATTTGTTGT+TGG + chr3_1:43051632-43051651 Msa0358290:intron 15.0%
!! TACTATTTATAATCAAAACA+TGG - chr3_1:43051895-43051914 None:intergenic 15.0%
!! TAAATATAATAAAGCTGAAT+AGG - chr3_1:43052130-43052149 None:intergenic 15.0%
!! TTTGTGGATAAAAAAATATA+AGG - chr3_1:43052602-43052621 None:intergenic 15.0%
!! ATATTGATACTTAAACTAAA+AGG - chr3_1:43052838-43052857 None:intergenic 15.0%
!! TAAAAAAAATTGAATAGACA+AGG - chr3_1:43052876-43052895 None:intergenic 15.0%
!!! TTATTAGATACTTTCTAAAA+GGG - chr3_1:43053604-43053623 None:intergenic 15.0%
!!! AAAAATATTTGGTGTAAATA+AGG - chr3_1:43054864-43054883 None:intergenic 15.0%
!!! TTATTTACACCAAATATTTT+TGG + chr3_1:43054863-43054882 Msa0358290:intron 15.0%
!! AAAATTACACCAAAAATATT+TGG - chr3_1:43054875-43054894 None:intergenic 15.0%
!!! TTATTTTTCTTTACTGATTT+TGG - chr3_1:43055240-43055259 None:intergenic 15.0%
!! AATCAGTAAAGAAAAATAAA+TGG + chr3_1:43055241-43055260 Msa0358290:CDS 15.0%
!!! AAATACTTTCTTTTTTTAAG+AGG + chr3_1:43055808-43055827 Msa0358290:intron 15.0%
!!! ATAATATCCATAATTCTTTT+AGG + chr3_1:43056544-43056563 Msa0358290:three_prime_UTR 15.0%
!!! TAATATCCATAATTCTTTTA+GGG + chr3_1:43056545-43056564 Msa0358290:three_prime_UTR 15.0%
!! ACAAAAGAAACAAAAATATT+GGG - chr3_1:43056694-43056713 None:intergenic 15.0%
!!! ATGTAATGGAAATATCTAAT+TGG + chr3_1:43048094-43048113 Msa0358290:CDS 20.0%
!!! AATTTTTGTATGTATGCATT+TGG + chr3_1:43048627-43048646 Msa0358290:CDS 20.0%
!! TTTCTTATAAATGTTGTATC+AGG - chr3_1:43048697-43048716 None:intergenic 20.0%
!!! TTACTGTTTTCATAATGAAA+AGG + chr3_1:43048983-43049002 Msa0358290:intron 20.0%
!! TGTAGAATTAAGTTATTTGA+TGG - chr3_1:43049049-43049068 None:intergenic 20.0%
!! AAATAACTTAATTCTACAGT+TGG + chr3_1:43049051-43049070 Msa0358290:intron 20.0%
!! AAATATAAACATACAGCAAA+AGG - chr3_1:43049173-43049192 None:intergenic 20.0%
!! ATCTAAATCTAGAAAGATAT+AGG - chr3_1:43049488-43049507 None:intergenic 20.0%
!! TAAAGTTACATAAGACATTA+AGG - chr3_1:43049547-43049566 None:intergenic 20.0%
!!! TTTGTCCTTTATTTATATGT+TGG + chr3_1:43049691-43049710 Msa0358290:intron 20.0%
!! AAGAACCAACATATAAATAA+AGG - chr3_1:43049699-43049718 None:intergenic 20.0%
!!! ATAAATGCTAGTTTTTGAAT+CGG + chr3_1:43049826-43049845 Msa0358290:intron 20.0%
!! TAAATATGTAATCTCTACTT+TGG + chr3_1:43050754-43050773 Msa0358290:intron 20.0%
!!! ATTTTTTCTAACAATACAAG+GGG - chr3_1:43050803-43050822 None:intergenic 20.0%
!!! TTAGCATTTAAGATAAACAA+GGG - chr3_1:43050975-43050994 None:intergenic 20.0%
!!! ATTAGCATTTAAGATAAACA+AGG - chr3_1:43050976-43050995 None:intergenic 20.0%
!! TTATTATATCAGGTATTTGT+TGG + chr3_1:43051306-43051325 Msa0358290:intron 20.0%
!!! ATTTATTAATTTGTTGTTGG+AGG + chr3_1:43051635-43051654 Msa0358290:intron 20.0%
!! TTGAATGAAATAATAAAGAG+AGG - chr3_1:43051829-43051848 None:intergenic 20.0%
!! TGTTCATATTTCATGAAATT+AGG - chr3_1:43052312-43052331 None:intergenic 20.0%
!! ATTTCATGAAATATGAACAT+TGG + chr3_1:43052313-43052332 Msa0358290:intron 20.0%
!! TTTATCTTGAAGCTTAATAT+GGG + chr3_1:43052507-43052526 Msa0358290:intron 20.0%
!!! AAAAAATACAAACTAGTTTG+TGG - chr3_1:43052618-43052637 None:intergenic 20.0%
!!! TGATTTAAAATCAATTTGTC+AGG + chr3_1:43052648-43052667 Msa0358290:intron 20.0%
!!! AATTGTTTTTAAACTATCCT+TGG - chr3_1:43052941-43052960 None:intergenic 20.0%
!!! AAAACAATTTTGAAAGAAAC+TGG + chr3_1:43052952-43052971 Msa0358290:intron 20.0%
!!! TTTTTCTTACCTAAATACTA+AGG - chr3_1:43053023-43053042 None:intergenic 20.0%
!!! AATAACATCTATATTTTTGC+AGG + chr3_1:43053234-43053253 Msa0358290:intron 20.0%
!!! TATTAGATACTTTCTAAAAG+GGG - chr3_1:43053603-43053622 None:intergenic 20.0%
!! CTTATTAGATACTTTCTAAA+AGG - chr3_1:43053605-43053624 None:intergenic 20.0%
!!! AATAAGCTATCTGATTTTTT+TGG + chr3_1:43053619-43053638 Msa0358290:intron 20.0%
!!! ATAAGCTATCTGATTTTTTT+GGG + chr3_1:43053620-43053639 Msa0358290:intron 20.0%
!! TGCTGTAAAAGATAAATATT+AGG - chr3_1:43053818-43053837 None:intergenic 20.0%
!!! AATATTTATCTTTTACAGCA+TGG + chr3_1:43053818-43053837 Msa0358290:intron 20.0%
!!! CCAAACTTTCTAAATTTTTA+GGG - chr3_1:43053854-43053873 None:intergenic 20.0%
!! TATTTATACAGGTAAGAAAA+TGG - chr3_1:43054371-43054390 None:intergenic 20.0%
!! TACTATGATTATGATAAGAT+AGG - chr3_1:43054463-43054482 None:intergenic 20.0%
!! CATAGTAATCAAAACTTATT+TGG - chr3_1:43054715-43054734 None:intergenic 20.0%
!! TTATTATTTAAGTGATAGCA+TGG - chr3_1:43055491-43055510 None:intergenic 20.0%
!! AATAATAATTCTAAGCATAC+TGG + chr3_1:43055503-43055522 Msa0358290:intron 20.0%
!!! ATTTTAATGTAGAGAAAGTT+AGG + chr3_1:43056106-43056125 Msa0358290:intron 20.0%
!! ATAAGTTATTGTTGAAATAG+TGG - chr3_1:43056260-43056279 None:intergenic 20.0%
!!! ACTTATTTTGTATTCTAATC+AGG + chr3_1:43056274-43056293 Msa0358290:intron 20.0%
!! GACAAAAGAAACAAAAATAT+TGG - chr3_1:43056695-43056714 None:intergenic 20.0%
! TATGTTTATATTTCCTTGGT+TGG + chr3_1:43049180-43049199 Msa0358290:intron 25.0%
! ATGTTTATATTTCCTTGGTT+GGG + chr3_1:43049181-43049200 Msa0358290:intron 25.0%
! ATTTCAAATCAGAAAGAGAA+AGG - chr3_1:43049263-43049282 None:intergenic 25.0%
!! CTTTCTGATTTGAAATTTAG+AGG + chr3_1:43049267-43049286 Msa0358290:intron 25.0%
! AATTTAGAGGTTTCAAAGTT+TGG + chr3_1:43049280-43049299 Msa0358290:intron 25.0%
!!! TTTCAAAGTTTGGTGTTTTA+GGG + chr3_1:43049290-43049309 Msa0358290:intron 25.0%
!!! TGAAGTTTGTGTTGTTATTT+TGG + chr3_1:43049438-43049457 Msa0358290:intron 25.0%
!!! GAAGTTTGTGTTGTTATTTT+GGG + chr3_1:43049439-43049458 Msa0358290:intron 25.0%
!!! AAGTTTGTGTTGTTATTTTG+GGG + chr3_1:43049440-43049459 Msa0358290:intron 25.0%
! TAAATCTAGAAAGATATAGG+AGG - chr3_1:43049485-43049504 None:intergenic 25.0%
! TCTAGATTTAGATTTCAAAG+AGG + chr3_1:43049495-43049514 Msa0358290:intron 25.0%
! ATAATAGATGTCTATTACAG+TGG - chr3_1:43049954-43049973 None:intergenic 25.0%
! GCTTATAAAAAAACGTTTGA+AGG + chr3_1:43050078-43050097 Msa0358290:intron 25.0%
!!! ATATTTTGAGTCTAGATGTA+AGG - chr3_1:43050117-43050136 None:intergenic 25.0%
!! ATATATCTTTAGCTTATCGT+TGG + chr3_1:43050475-43050494 Msa0358290:intron 25.0%
!! TATATCTTTAGCTTATCGTT+GGG + chr3_1:43050476-43050495 Msa0358290:intron 25.0%
!!! CAATGAAATTTTGAAGTAGT+GGG - chr3_1:43050705-43050724 None:intergenic 25.0%
!!! TTTTTTCTAACAATACAAGG+GGG - chr3_1:43050802-43050821 None:intergenic 25.0%
!! ATTTAAGATAAACAAGGGAA+AGG - chr3_1:43050970-43050989 None:intergenic 25.0%
!! TTCTTTTCTGCAATTGATAA+TGG + chr3_1:43051236-43051255 Msa0358290:intron 25.0%
! GGGGTAGAAATTTAAAAATT+AGG - chr3_1:43051465-43051484 None:intergenic 25.0%
!!! TTTCCGATGTATTTTAACTT+CGG + chr3_1:43051693-43051712 Msa0358290:intron 25.0%
! CTGAAGTAATATGTCAAAAA+GGG - chr3_1:43051722-43051741 None:intergenic 25.0%
! ACTGAAGTAATATGTCAAAA+AGG - chr3_1:43051723-43051742 None:intergenic 25.0%
! AAGATGTAAAGACTGAAATA+TGG - chr3_1:43051953-43051972 None:intergenic 25.0%
! TATTTCAGTCTTTACATCTT+TGG + chr3_1:43051953-43051972 Msa0358290:intron 25.0%
!! CATTGTCTCTAATTTTACAT+AGG + chr3_1:43052190-43052209 Msa0358290:intron 25.0%
!! TGAAATTAGGCAGTATTTTA+AGG - chr3_1:43052299-43052318 None:intergenic 25.0%
! AATATGAACATTGGAATACA+AGG + chr3_1:43052322-43052341 Msa0358290:intron 25.0%
! ATACAAAACAATATCTTCCT+TGG - chr3_1:43052441-43052460 None:intergenic 25.0%
!!! TATTGTTTTGTATTCAGCTA+AGG + chr3_1:43052448-43052467 Msa0358290:CDS 25.0%
! AAAATACTGCATTATCTGTT+TGG + chr3_1:43052477-43052496 Msa0358290:intron 25.0%
! CTTTATCTTGAAGCTTAATA+TGG + chr3_1:43052506-43052525 Msa0358290:intron 25.0%
! ATTGGATCAACAATAGTTAT+GGG + chr3_1:43052724-43052743 Msa0358290:CDS 25.0%
! TTGATACTTAAACTAAAAGG+AGG - chr3_1:43052835-43052854 None:intergenic 25.0%
! GCAGAGTTGTAATAATAATT+TGG - chr3_1:43052915-43052934 None:intergenic 25.0%
! GTATTTAGGTAAGAAAAATG+AGG + chr3_1:43053025-43053044 Msa0358290:intron 25.0%
!! CTGTAAATTTTCTTTTCCAA+GGG - chr3_1:43053553-43053572 None:intergenic 25.0%
! AAAGAAAATTTACAGGTTAG+TGG + chr3_1:43053558-43053577 Msa0358290:intron 25.0%
! CCCTAAAAATTTAGAAAGTT+TGG + chr3_1:43053851-43053870 Msa0358290:CDS 25.0%
!! GCCAAACTTTCTAAATTTTT+AGG - chr3_1:43053855-43053874 None:intergenic 25.0%
! AAAAATTTAGAAAGTTTGGC+TGG + chr3_1:43053855-43053874 Msa0358290:CDS 25.0%
!! AATTCTTATCTTCCCTTTTA+AGG - chr3_1:43053886-43053905 None:intergenic 25.0%
!! TGCTTTTACCATGTATATAT+GGG - chr3_1:43054412-43054431 None:intergenic 25.0%
!!! CTATTTTTTGTGAAACTCAA+AGG + chr3_1:43054599-43054618 Msa0358290:intron 25.0%
! TGCACTAATTAATAGAACAT+GGG - chr3_1:43054929-43054948 None:intergenic 25.0%
! AAATCAATCAAAGCAAACAA+TGG + chr3_1:43055078-43055097 Msa0358290:CDS 25.0%
! GGTAAAACCATAAAAAATGA+TGG + chr3_1:43055561-43055580 Msa0358290:intron 25.0%
!! AAACCATAAAAAATGATGGA+TGG + chr3_1:43055565-43055584 Msa0358290:intron 25.0%
!!! AACCATAAAAAATGATGGAT+GGG + chr3_1:43055566-43055585 Msa0358290:intron 25.0%
! TCTTTGTAGTAAAACAAAGT+GGG - chr3_1:43056035-43056054 None:intergenic 25.0%
! TTCTTTGTAGTAAAACAAAG+TGG - chr3_1:43056036-43056055 None:intergenic 25.0%
!! ATTTTAGACCATGTATATCT+CGG + chr3_1:43056154-43056173 Msa0358290:intron 25.0%
! ATCTCGGTATTATCTATAAT+AGG + chr3_1:43056170-43056189 Msa0358290:intron 25.0%
! AAAAAATTGGCAATATCTTG+AGG + chr3_1:43056322-43056341 Msa0358290:CDS 25.0%
!!! TATTTTGGTGAGCTATATTT+TGG + chr3_1:43056420-43056439 Msa0358290:three_prime_UTR 25.0%
! ATGATAATCCATCATTTACA+TGG + chr3_1:43056493-43056512 Msa0358290:three_prime_UTR 25.0%
! AGAAGACATTTACACATTTA+TGG - chr3_1:43056780-43056799 None:intergenic 25.0%
ACTATGCTGTTATCATGTAA+TGG + chr3_1:43048080-43048099 Msa0358290:CDS 30.0%
!!! TTATTTTTGAATGCACGAGT+AGG + chr3_1:43048120-43048139 Msa0358290:CDS 30.0%
AAAAGAAGGAGAAGAATTGA+AGG + chr3_1:43048174-43048193 Msa0358290:CDS 30.0%
!!! GAATCTTCCATACTTTTTCT+TGG - chr3_1:43048201-43048220 None:intergenic 30.0%
! CAATTTTATGAAGGAAACGA+CGG + chr3_1:43048240-43048259 Msa0358290:CDS 30.0%
GAATGAATTGTATGCTTGTT+GGG + chr3_1:43048307-43048326 Msa0358290:intron 30.0%
AAAAGCTGAAAACAACTTAC+TGG + chr3_1:43048451-43048470 Msa0358290:intron 30.0%
ACAATTTGACAATGACTTTG+AGG - chr3_1:43048567-43048586 None:intergenic 30.0%
! GTATAATCTTTTGTACTCCA+AGG - chr3_1:43048675-43048694 None:intergenic 30.0%
! TAACAAGTGCTTCAATTTTG+TGG - chr3_1:43048726-43048745 None:intergenic 30.0%
TAACTTAATTCTACAGTTGG+TGG + chr3_1:43049054-43049073 Msa0358290:intron 30.0%
GCTGTATGTTTATATTTCCT+TGG + chr3_1:43049176-43049195 Msa0358290:intron 30.0%
!!! GTTTCAAAGTTTGGTGTTTT+AGG + chr3_1:43049289-43049308 Msa0358290:intron 30.0%
TTAGATGGAATCTTAACCTT+TGG - chr3_1:43049322-43049341 None:intergenic 30.0%
ACAAAAGTCTCTAACTTAGA+TGG - chr3_1:43049337-43049356 None:intergenic 30.0%
!! AGAGACTTTTGTTTGAAATG+TGG + chr3_1:43049345-43049364 Msa0358290:intron 30.0%
! AAGGAAAATGAAGTGTTAGA+AGG - chr3_1:43049634-43049653 None:intergenic 30.0%
GTTCTTAACATTACTTATCC+TGG + chr3_1:43049713-43049732 Msa0358290:intron 30.0%
AGATGCAAAAATTGGTGTAT+TGG - chr3_1:43049766-43049785 None:intergenic 30.0%
GTAAAGGAAGATGCAAAAAT+TGG - chr3_1:43049774-43049793 None:intergenic 30.0%
! TTTTGCATCTTCCTTTACAA+TGG + chr3_1:43049776-43049795 Msa0358290:CDS 30.0%
! ATTTGAGATAGAACCAATCA+GGG + chr3_1:43050168-43050187 Msa0358290:CDS 30.0%
! TTGATGGGAAAGTTTTTGAT+CGG + chr3_1:43050371-43050390 Msa0358290:CDS 30.0%
!!! GCAATGAAATTTTGAAGTAG+TGG - chr3_1:43050706-43050725 None:intergenic 30.0%
! TTTTTCTAACAATACAAGGG+GGG - chr3_1:43050801-43050820 None:intergenic 30.0%
ATTATAAACAAGTGAGCATC+TGG - chr3_1:43050891-43050910 None:intergenic 30.0%
ATGTAGATTTGATGCAAACT+GGG - chr3_1:43051146-43051165 None:intergenic 30.0%
AGTTTGCATCAAATCTACAT+CGG + chr3_1:43051146-43051165 Msa0358290:CDS 30.0%
AGAAAAGAATACTAGCTAGT+GGG - chr3_1:43051225-43051244 None:intergenic 30.0%
! TATTTGTTGGCATGTCTTTA+AGG + chr3_1:43051319-43051338 Msa0358290:CDS 30.0%
! CATTTATTACCAGAGTTGAT+GGG - chr3_1:43051389-43051408 None:intergenic 30.0%
!!! GATCTGCTTTTTCATTTACT+AGG + chr3_1:43051530-43051549 Msa0358290:intron 30.0%
AATACATCGGAAAATTCATG+TGG - chr3_1:43051686-43051705 None:intergenic 30.0%
!!! TTCCGATGTATTTTAACTTC+GGG + chr3_1:43051694-43051713 Msa0358290:intron 30.0%
TGATTTCAAGAGGTTCATTA+TGG + chr3_1:43051757-43051776 Msa0358290:intron 30.0%
TGACAGCATACTGTATTTAA+AGG - chr3_1:43051784-43051803 None:intergenic 30.0%
TGTCATTATCTGTGACTAAT+TGG + chr3_1:43051799-43051818 Msa0358290:intron 30.0%
ATGAAATAATAAAGAGAGGC+AGG - chr3_1:43051825-43051844 None:intergenic 30.0%
! GACACAAAAGCACATATATT+TGG - chr3_1:43052355-43052374 None:intergenic 30.0%
! AATATATGTGCTTTTGTGTC+AGG + chr3_1:43052355-43052374 Msa0358290:intron 30.0%
TCCAAAAGATGCAAGATTTA+AGG - chr3_1:43052396-43052415 None:intergenic 30.0%
! TTTTGTATTCAGCTAAGGTA+TGG + chr3_1:43052453-43052472 Msa0358290:intron 30.0%
GCAGGTTGTAATTTCATAAT+AGG - chr3_1:43052549-43052568 None:intergenic 30.0%
!! AATATAAGGTGTTGCTAGAA+AGG - chr3_1:43052588-43052607 None:intergenic 30.0%
GATTGGATCAACAATAGTTA+TGG + chr3_1:43052723-43052742 Msa0358290:CDS 30.0%
TTGGATCAACAATAGTTATG+GGG + chr3_1:43052725-43052744 Msa0358290:CDS 30.0%
AATGAAAACTTACACACATC+TGG + chr3_1:43052751-43052770 Msa0358290:CDS 30.0%
CATGAATGATTGTACTGAAA+AGG - chr3_1:43053156-43053175 None:intergenic 30.0%
!! AACATCTATATTTTTGCAGG+AGG + chr3_1:43053237-43053256 Msa0358290:intron 30.0%
TTTCACACTTGAGAAATAGA+AGG + chr3_1:43053505-43053524 Msa0358290:CDS 30.0%
TTCACACTTGAGAAATAGAA+GGG + chr3_1:43053506-43053525 Msa0358290:CDS 30.0%
AATAGAAGGGTTCTTTCTAA+TGG + chr3_1:43053519-43053538 Msa0358290:CDS 30.0%
! CCTGTAAATTTTCTTTTCCA+AGG - chr3_1:43053554-43053573 None:intergenic 30.0%
CCTTGGAAAAGAAAATTTAC+AGG + chr3_1:43053551-43053570 Msa0358290:CDS 30.0%
TATTTCAACTGCATGAGAAA+AGG - chr3_1:43053649-43053668 None:intergenic 30.0%
ATGCAGTTGAAATATAGTGA+TGG + chr3_1:43053655-43053674 Msa0358290:intron 30.0%
CAATTCTCATTCTTTCATCA+AGG - chr3_1:43053714-43053733 None:intergenic 30.0%
AGAATGAGAATTGCATTAGA+TGG + chr3_1:43053721-43053740 Msa0358290:CDS 30.0%
GAGATAAACACAAAATTGTC+TGG + chr3_1:43054122-43054141 Msa0358290:CDS 30.0%
CTTCTAAATGTTGATATTCC+AGG - chr3_1:43054164-43054183 None:intergenic 30.0%
ATCAACATTTAGAAGATCCA+TGG + chr3_1:43054169-43054188 Msa0358290:CDS 30.0%
ATCCATGGATGAACATAAAA+AGG + chr3_1:43054184-43054203 Msa0358290:CDS 30.0%
! TTCCTTTTTATGTTCATCCA+TGG - chr3_1:43054189-43054208 None:intergenic 30.0%
!!! GTCAGTTTTGCTATTTATAC+AGG - chr3_1:43054382-43054401 None:intergenic 30.0%
!! CTGCTTTTACCATGTATATA+TGG - chr3_1:43054413-43054432 None:intergenic 30.0%
TAGTAGAATGCTACTGTTAT+TGG + chr3_1:43054543-43054562 Msa0358290:intron 30.0%
AGTGAAAACCATAGTTAGAT+CGG - chr3_1:43054643-43054662 None:intergenic 30.0%
TTATCTTCACAAAACAATGC+TGG + chr3_1:43054670-43054689 Msa0358290:intron 30.0%
TTACTAAATAGACTGTAGTC+AGG - chr3_1:43054814-43054833 None:intergenic 30.0%
!! TGGTGTAAATAAGGTATTGA+AGG - chr3_1:43054855-43054874 None:intergenic 30.0%
CTGCACTAATTAATAGAACA+TGG - chr3_1:43054930-43054949 None:intergenic 30.0%
CTATTAATTAGTGCAGATGA+TGG + chr3_1:43054934-43054953 Msa0358290:intron 30.0%
GAAAAATAAATGGAAAACCG+AGG + chr3_1:43055251-43055270 Msa0358290:CDS 30.0%
TCACAACTTTAAATCTGTCA+CGG - chr3_1:43055311-43055330 None:intergenic 30.0%
! GACAGATTTAAAGTTGTGAA+AGG + chr3_1:43055312-43055331 Msa0358290:CDS 30.0%
! GATTTAAAGTTGTGAAAGGA+AGG + chr3_1:43055316-43055335 Msa0358290:CDS 30.0%
ATCTTTGGCACTTAAATATG+AGG + chr3_1:43055422-43055441 Msa0358290:CDS 30.0%
TGTTTAATGATCAGTTTGTG+AGG + chr3_1:43055532-43055551 Msa0358290:intron 30.0%
!!! AACCCATCCATCATTTTTTA+TGG - chr3_1:43055571-43055590 None:intergenic 30.0%
AAATCGGTGTACATTGTTAT+GGG - chr3_1:43055762-43055781 None:intergenic 30.0%
TAAATCGGTGTACATTGTTA+TGG - chr3_1:43055763-43055782 None:intergenic 30.0%
ACAAGAAAAGCAACGTAAAT+CGG - chr3_1:43055778-43055797 None:intergenic 30.0%
!! TTGCTTTTCTTGTGTAAGAT+AGG + chr3_1:43055785-43055804 Msa0358290:intron 30.0%
! AGGTTTTCTTGCATCTTTTT+CGG + chr3_1:43055828-43055847 Msa0358290:intron 30.0%
AAATATCAATTGCATGCCAT+AGG + chr3_1:43055962-43055981 Msa0358290:intron 30.0%
CTTTGTAGTAAAACAAAGTG+GGG - chr3_1:43056034-43056053 None:intergenic 30.0%
AGATAATACCGAGATATACA+TGG - chr3_1:43056165-43056184 None:intergenic 30.0%
TCGGTATTATCTATAATAGG+AGG + chr3_1:43056173-43056192 Msa0358290:intron 30.0%
CGGTATTATCTATAATAGGA+GGG + chr3_1:43056174-43056193 Msa0358290:intron 30.0%
GGAAAGATAGCAGAAAAAAT+TGG + chr3_1:43056309-43056328 Msa0358290:CDS 30.0%
!! ATTTCCATTCAATTTGTTGC+CGG - chr3_1:43056380-43056399 None:intergenic 30.0%
CAACAAATTGAATGGAAATG+CGG + chr3_1:43056381-43056400 Msa0358290:exon 30.0%
! GGGCAGAATAAGAAATATTT+TGG + chr3_1:43056405-43056424 Msa0358290:three_prime_UTR 30.0%
!! TGAGCTATATTTTGGAAATG+TGG + chr3_1:43056428-43056447 Msa0358290:three_prime_UTR 30.0%
!! TAAATGATGGATTATCATCC+TGG - chr3_1:43056491-43056510 None:intergenic 30.0%
AAGGTAATAGGCAACATAAA+AGG + chr3_1:43056570-43056589 Msa0358290:three_prime_UTR 30.0%
AGGTAATAGGCAACATAAAA+GGG + chr3_1:43056571-43056590 Msa0358290:three_prime_UTR 30.0%
! TATCAAGGGAAAGAGTATAT+GGG + chr3_1:43056623-43056642 Msa0358290:three_prime_UTR 30.0%
!! GAAAGAGTATATGGGTTTTA+GGG + chr3_1:43056631-43056650 Msa0358290:three_prime_UTR 30.0%
!! AAAGAGTATATGGGTTTTAG+GGG + chr3_1:43056632-43056651 Msa0358290:three_prime_UTR 30.0%
! CATACAACATTGATAGTCAT+AGG + chr3_1:43056812-43056831 Msa0358290:three_prime_UTR 30.0%
! ATTCTTCTCCTTCTTTTGTG+TGG - chr3_1:43048171-43048190 None:intergenic 35.0%
TGAAGGTCCAAGAAAAAGTA+TGG + chr3_1:43048191-43048210 Msa0358290:CDS 35.0%
! AGGATGGAGCAATTTTATGA+AGG + chr3_1:43048231-43048250 Msa0358290:CDS 35.0%
GGAATGAATTGTATGCTTGT+TGG + chr3_1:43048306-43048325 Msa0358290:intron 35.0%
CAGCATCAATGAGGATATAA+CGG - chr3_1:43048341-43048360 None:intergenic 35.0%
ACTATTAAGGACCACTTACT+CGG - chr3_1:43048376-43048395 None:intergenic 35.0%
!! GAAGCACTTGTTATAACACA+TGG + chr3_1:43048733-43048752 Msa0358290:CDS 35.0%
CATGGTCATGAAGATCATAT+CGG + chr3_1:43048751-43048770 Msa0358290:CDS 35.0%
! AGTCCTATGTCTAAAACATG+AGG - chr3_1:43049091-43049110 None:intergenic 35.0%
TAGACATAGGACTCTTTGAT+AGG + chr3_1:43049098-43049117 Msa0358290:intron 35.0%
TCAGAAAGAGAAAGGAAGAT+AGG - chr3_1:43049255-43049274 None:intergenic 35.0%
!!! TGTTTTAGGGTCTTTTCCAA+AGG + chr3_1:43049303-43049322 Msa0358290:intron 35.0%
! ATGAAGTGTTAGAAGGAAGA+AGG - chr3_1:43049627-43049646 None:intergenic 35.0%
ATTACTTATCCTGGTTCATC+AGG + chr3_1:43049722-43049741 Msa0358290:intron 35.0%
!! TCCTTTACAATGGAGGTATT+CGG + chr3_1:43049786-43049805 Msa0358290:intron 35.0%
GTGTGTATCAACTAAACTGT+TGG + chr3_1:43049859-43049878 Msa0358290:intron 35.0%
GTATCAACTAAACTGTTGGT+AGG + chr3_1:43049863-43049882 Msa0358290:intron 35.0%
AGAAAAAATATCACCTTCCC+TGG - chr3_1:43050050-43050069 None:intergenic 35.0%
AAAAAACGTTTGAAGGAGCA+TGG + chr3_1:43050085-43050104 Msa0358290:CDS 35.0%
!! CTGATTGGTTCTATCTCAAA+TGG - chr3_1:43050169-43050188 None:intergenic 35.0%
! CATTTGAGATAGAACCAATC+AGG + chr3_1:43050167-43050186 Msa0358290:CDS 35.0%
ATGGAACTATTCTTCACACT+GGG + chr3_1:43050239-43050258 Msa0358290:CDS 35.0%
GGAGATTCAAGGTAAATGAA+AGG - chr3_1:43050309-43050328 None:intergenic 35.0%
TCAAAAACTTTCCCATCAAG+TGG - chr3_1:43050370-43050389 None:intergenic 35.0%
! TGATGGGAAAGTTTTTGATC+GGG + chr3_1:43050372-43050391 Msa0358290:CDS 35.0%
! TTAGAGGAACTCTCTAAAGA+AGG + chr3_1:43050400-43050419 Msa0358290:CDS 35.0%
! CTCTAAAGAAGGAGTAACAT+TGG + chr3_1:43050411-43050430 Msa0358290:CDS 35.0%
AAGCCATATTCAGCTTAACA+GGG - chr3_1:43050637-43050656 None:intergenic 35.0%
AAAGCCATATTCAGCTTAAC+AGG - chr3_1:43050638-43050657 None:intergenic 35.0%
TAAGCTGAATATGGCTTTCA+TGG + chr3_1:43050640-43050659 Msa0358290:intron 35.0%
ATGCTAATCACAAGCAAACA+TGG + chr3_1:43050988-43051007 Msa0358290:intron 35.0%
TTGTGGCAGATTCATTATTG+AGG + chr3_1:43051086-43051105 Msa0358290:CDS 35.0%
ACATTTCAGCTTCAAAAGGA+AGG + chr3_1:43051110-43051129 Msa0358290:CDS 35.0%
CATTTCAGCTTCAAAAGGAA+GGG + chr3_1:43051111-43051130 Msa0358290:CDS 35.0%
GATGTAGATTTGATGCAAAC+TGG - chr3_1:43051147-43051166 None:intergenic 35.0%
CAACTTTCTCCCAGTTAAAT+CGG - chr3_1:43051194-43051213 None:intergenic 35.0%
CAGAAAAGAATACTAGCTAG+TGG - chr3_1:43051226-43051245 None:intergenic 35.0%
GCATTTATTACCAGAGTTGA+TGG - chr3_1:43051390-43051409 None:intergenic 35.0%
TCTTCCTAATTTGATGCACT+TGG + chr3_1:43051431-43051450 Msa0358290:intron 35.0%
!! GGTTATGGTTTTACAGAAGT+TGG + chr3_1:43051590-43051609 Msa0358290:CDS 35.0%
CTCCCGAAGTTAAAATACAT+CGG - chr3_1:43051699-43051718 None:intergenic 35.0%
CTTGAAATCAGTGTAGTCAA+AGG - chr3_1:43051747-43051766 None:intergenic 35.0%
!! TTGACTACACTGATTTCAAG+AGG + chr3_1:43051747-43051766 Msa0358290:intron 35.0%
!! AGTTTAGTCTTGAAAGCAGA+TGG - chr3_1:43051871-43051890 None:intergenic 35.0%
ACATCTTTGGTAGAATTTCC+AGG + chr3_1:43051966-43051985 Msa0358290:intron 35.0%
CCTCGAAAGTTGTTAAAGTA+GGG - chr3_1:43052003-43052022 None:intergenic 35.0%
ATTAGAGACAATGAGATGCA+GGG - chr3_1:43052183-43052202 None:intergenic 35.0%
AATTAGAGACAATGAGATGC+AGG - chr3_1:43052184-43052203 None:intergenic 35.0%
! TTTTACATAGGTGAAAGCAG+AGG + chr3_1:43052202-43052221 Msa0358290:intron 35.0%
TATTGATGCTTATGCACCTA+AGG + chr3_1:43052226-43052245 Msa0358290:CDS 35.0%
GTTACAATAAGCAGATCCTT+AGG - chr3_1:43052245-43052264 None:intergenic 35.0%
GATCTGCTTATTGTAACAAC+TGG + chr3_1:43052248-43052267 Msa0358290:CDS 35.0%
! GCCTTAAATCTTGCATCTTT+TGG + chr3_1:43052392-43052411 Msa0358290:CDS 35.0%
ATTCATCATTTCCATCACAC+GGG - chr3_1:43052692-43052711 None:intergenic 35.0%
GATTCATCATTTCCATCACA+CGG - chr3_1:43052693-43052712 None:intergenic 35.0%
ATGAATCGCATATCAGAGAT+TGG + chr3_1:43052706-43052725 Msa0358290:CDS 35.0%
TATTACAACTCTGCTAACCA+AGG + chr3_1:43052921-43052940 Msa0358290:intron 35.0%
AGAACAGGTAAAACATTGGA+AGG - chr3_1:43053000-43053019 None:intergenic 35.0%
AAGGAGAACAGGTAAAACAT+TGG - chr3_1:43053004-43053023 None:intergenic 35.0%
ACCTGTTCTCCTTAGTATTT+AGG + chr3_1:43053011-43053030 Msa0358290:intron 35.0%
ACCTAAATACTAAGGAGAAC+AGG - chr3_1:43053015-43053034 None:intergenic 35.0%
TGTACAGGAAGAAAATGTTG+CGG - chr3_1:43053283-43053302 None:intergenic 35.0%
! CAACATTTTCTTCCTGTACA+TGG + chr3_1:43053283-43053302 Msa0358290:CDS 35.0%
AACAAGTATTCTCCATGTAC+AGG - chr3_1:43053298-43053317 None:intergenic 35.0%
GAATCACTTGGAAAATCAAC+TGG + chr3_1:43053331-43053350 Msa0358290:CDS 35.0%
TTGGAAAATCAACTGGCATT+CGG + chr3_1:43053338-43053357 Msa0358290:CDS 35.0%
CTTTATCACAAGATCTGTCT+GGG - chr3_1:43053387-43053406 None:intergenic 35.0%
TCTTTATCACAAGATCTGTC+TGG - chr3_1:43053388-43053407 None:intergenic 35.0%
ATGCACCAGGTTATTAAGAA+TGG + chr3_1:43053468-43053487 Msa0358290:intron 35.0%
TCTCTCCATTCTTAATAACC+TGG - chr3_1:43053476-43053495 None:intergenic 35.0%
ATTAAGAATGGAGAGATGCT+TGG + chr3_1:43053480-43053499 Msa0358290:CDS 35.0%
TCTAATGGTTTCATTTCCCT+TGG + chr3_1:43053534-43053553 Msa0358290:CDS 35.0%
TAGATGGCATCATTGTGATT+AGG + chr3_1:43053737-43053756 Msa0358290:CDS 35.0%
GAATTACCACAAGATGTCTA+TGG + chr3_1:43053901-43053920 Msa0358290:CDS 35.0%
TATCGCAATGGCAATTACTT+CGG - chr3_1:43054075-43054094 None:intergenic 35.0%
ATATTGAACTGTCAACTGCT+GGG + chr3_1:43054265-43054284 Msa0358290:intron 35.0%
TATACATGGTAAAAGCAGAG+TGG + chr3_1:43054415-43054434 Msa0358290:intron 35.0%
TATGTGAACCGATCTAACTA+TGG + chr3_1:43054632-43054651 Msa0358290:intron 35.0%
AAGCTAAGAAGTCTCACTTT+GGG + chr3_1:43054735-43054754 Msa0358290:intron 35.0%
TTTGGGTGTAAATCTTGAGA+CGG + chr3_1:43054752-43054771 Msa0358290:intron 35.0%
AAGGCGATTTATCTGATTCA+GGG + chr3_1:43055010-43055029 Msa0358290:CDS 35.0%
TTTATCTGATTCAGGGGAAT+CGG + chr3_1:43055017-43055036 Msa0358290:CDS 35.0%
! TCAACTGATGATGCAATGAA+TGG - chr3_1:43055057-43055076 None:intergenic 35.0%
CAATGGTTATGTTTCACGAA+AGG + chr3_1:43055095-43055114 Msa0358290:CDS 35.0%
ATCAGACATTTCTTCAGACT+TGG - chr3_1:43055169-43055188 None:intergenic 35.0%
TCCAAAAGAAATGTCTGATG+CGG + chr3_1:43055203-43055222 Msa0358290:CDS 35.0%
!!! TTTACTGATTTTGGAGACTC+TGG - chr3_1:43055231-43055250 None:intergenic 35.0%
!! TCAAGAAGCTGATTGATTTG+CGG + chr3_1:43055277-43055296 Msa0358290:CDS 35.0%
TAAAGTTGTGAAAGGAAGGA+TGG + chr3_1:43055320-43055339 Msa0358290:CDS 35.0%
CAAATCTTTGTGGACATCTT+TGG + chr3_1:43055407-43055426 Msa0358290:CDS 35.0%
AGGGAGAAAATTTCATGGAT+TGG - chr3_1:43055618-43055637 None:intergenic 35.0%
TCAAGGTCAATTTAGTACGA+GGG - chr3_1:43055637-43055656 None:intergenic 35.0%
CTGATATAGAAGTTTCCTCA+AGG - chr3_1:43055654-43055673 None:intergenic 35.0%
TGAAACTACAACTTACATGG+CGG + chr3_1:43055853-43055872 Msa0358290:intron 35.0%
AAGCAATTGAAGGGAAGATT+AGG - chr3_1:43055890-43055909 None:intergenic 35.0%
AAAGGGTAATGTACTACCTA+TGG - chr3_1:43055981-43056000 None:intergenic 35.0%
! CATTACCCTTTTATCATTGC+TGG + chr3_1:43055990-43056009 Msa0358290:intron 35.0%
CGAAAAAAGACAGAGTTGAA+CGG - chr3_1:43056073-43056092 None:intergenic 35.0%
! TTCAGCTTTAGTACAAGTGT+AGG + chr3_1:43056203-43056222 Msa0358290:intron 35.0%
TCTAATCAGGAGATCAAGAA+TGG + chr3_1:43056287-43056306 Msa0358290:intron 35.0%
CTAATCAGGAGATCAAGAAT+GGG + chr3_1:43056288-43056307 Msa0358290:intron 35.0%
AATATCTTGAGGACATGGAA+AGG + chr3_1:43056333-43056352 Msa0358290:CDS 35.0%
ATTGTCTAGTGATGAAACAC+CGG + chr3_1:43056358-43056377 Msa0358290:CDS 35.0%
AAATTGAATGGAAATGCGGT+GGG + chr3_1:43056385-43056404 Msa0358290:exon 35.0%
!! GCTATATTTTGGAAATGTGG+CGG + chr3_1:43056431-43056450 Msa0358290:three_prime_UTR 35.0%
!! CTATATTTTGGAAATGTGGC+GGG + chr3_1:43056432-43056451 Msa0358290:three_prime_UTR 35.0%
ATCCATCATTTACATGGTTC+TGG + chr3_1:43056499-43056518 Msa0358290:three_prime_UTR 35.0%
TACCAGAACCATGTAAATGA+TGG - chr3_1:43056504-43056523 None:intergenic 35.0%
!! TTTACATGGTTCTGGTAACA+TGG + chr3_1:43056507-43056526 Msa0358290:three_prime_UTR 35.0%
CCTTAGCCCTAAAAGAATTA+TGG - chr3_1:43056554-43056573 None:intergenic 35.0%
!!! CCATAATTCTTTTAGGGCTA+AGG + chr3_1:43056551-43056570 Msa0358290:three_prime_UTR 35.0%
!!! TCTTTTAGGGCTAAGGTAAT+AGG + chr3_1:43056558-43056577 Msa0358290:three_prime_UTR 35.0%
ATAGGCAACATAAAAGGGAT+TGG + chr3_1:43056576-43056595 Msa0358290:three_prime_UTR 35.0%
! CTATCAAGGGAAAGAGTATA+TGG + chr3_1:43056622-43056641 Msa0358290:three_prime_UTR 35.0%
!! GGAAAGAGTATATGGGTTTT+AGG + chr3_1:43056630-43056649 Msa0358290:three_prime_UTR 35.0%
!!! AAGAGTATATGGGTTTTAGG+GGG + chr3_1:43056633-43056652 Msa0358290:three_prime_UTR 35.0%
AAACAAAAATATTGGGCCGT+GGG - chr3_1:43056687-43056706 None:intergenic 35.0%
! ATTTTGTTAGTGGCACGTTT+TGG + chr3_1:43056751-43056770 Msa0358290:three_prime_UTR 35.0%
! TTTTGTTAGTGGCACGTTTT+GGG + chr3_1:43056752-43056771 Msa0358290:three_prime_UTR 35.0%
!! TGAGAGTGTTGAAGCTGAAA+CGG - chr3_1:43047992-43048011 None:intergenic 40.0%
AATGCACGAGTAGGAAATGA+TGG + chr3_1:43048129-43048148 Msa0358290:CDS 40.0%
! CTAGAGTACCACACAAAAGA+AGG + chr3_1:43048160-43048179 Msa0358290:CDS 40.0%
TGGAAGATTCTGTTCAACGT+AGG + chr3_1:43048211-43048230 Msa0358290:CDS 40.0%
AGATTCTGTTCAACGTAGGA+TGG + chr3_1:43048215-43048234 Msa0358290:CDS 40.0%
ATAGGAAGAACACGTAATGG+CGG - chr3_1:43048267-43048286 None:intergenic 40.0%
CCAATAGGAAGAACACGTAA+TGG - chr3_1:43048270-43048289 None:intergenic 40.0%
CCATTACGTGTTCTTCCTAT+TGG + chr3_1:43048267-43048286 Msa0358290:CDS 40.0%
TTACGTGTTCTTCCTATTGG+TGG + chr3_1:43048270-43048289 Msa0358290:CDS 40.0%
! TGTTCTTCCTATTGGTGGTT+TGG + chr3_1:43048275-43048294 Msa0358290:CDS 40.0%
! GTTCTTCCTATTGGTGGTTT+GGG + chr3_1:43048276-43048295 Msa0358290:CDS 40.0%
ATTTCACCCAAACCACCAAT+AGG - chr3_1:43048285-43048304 None:intergenic 40.0%
! ATTGGTGGTTTGGGTGAAAT+TGG + chr3_1:43048285-43048304 Msa0358290:CDS 40.0%
CGTTATATCCTCATTGATGC+TGG + chr3_1:43048339-43048358 Msa0358290:intron 40.0%
ACATGATACCAGCATCAATG+AGG - chr3_1:43048350-43048369 None:intergenic 40.0%
TATCATGTTTCCCGAGTAAG+TGG + chr3_1:43048362-43048381 Msa0358290:intron 40.0%
CTATTAAGGACCACTTACTC+GGG - chr3_1:43048375-43048394 None:intergenic 40.0%
! TTTTCCATAAGCTCTCTCTC+AGG - chr3_1:43048433-43048452 None:intergenic 40.0%
!! TTTTTCAGCTATGACGACCT+TGG + chr3_1:43048655-43048674 Msa0358290:CDS 40.0%
GGTAATGCTTCCATCTCTAT+TGG + chr3_1:43048786-43048805 Msa0358290:intron 40.0%
! AGCACTCTTTTGTTCATCGA+AGG + chr3_1:43048941-43048960 Msa0358290:intron 40.0%
! ACTCTTTTGTTCATCGAAGG+AGG + chr3_1:43048944-43048963 Msa0358290:intron 40.0%
!! TAATTCTACAGTTGGTGGCT+CGG + chr3_1:43049059-43049078 Msa0358290:intron 40.0%
!! GTGCCTCATGTTTTAGACAT+AGG + chr3_1:43049085-43049104 Msa0358290:intron 40.0%
! GGACTCTTTGATAGGTTTTC+TGG + chr3_1:43049106-43049125 Msa0358290:intron 40.0%
TCGCTACAAGCTTGAACAAT+TGG + chr3_1:43049145-43049164 Msa0358290:intron 40.0%
ATATTTCCTTGGTTGGGACT+TGG + chr3_1:43049187-43049206 Msa0358290:intron 40.0%
TATTTCCTTGGTTGGGACTT+GGG + chr3_1:43049188-43049207 Msa0358290:intron 40.0%
!! AAATAGCCTTGTGACTTGTG+AGG - chr3_1:43049414-43049433 None:intergenic 40.0%
GTGTATTGGAATCCAATGCT+GGG - chr3_1:43049752-43049771 None:intergenic 40.0%
TGCATCTTCCTTTACAATGG+AGG + chr3_1:43049779-43049798 Msa0358290:CDS 40.0%
ACAAAGAACAAGTTTGTCGC+TGG + chr3_1:43050142-43050161 Msa0358290:CDS 40.0%
CAAAGAACAAGTTTGTCGCT+GGG + chr3_1:43050143-43050162 Msa0358290:CDS 40.0%
ATAGAATGAGTCACCCTGAT+TGG - chr3_1:43050184-43050203 None:intergenic 40.0%
CATTCTATTCCTGACTGTTG+TGG + chr3_1:43050196-43050215 Msa0358290:CDS 40.0%
! CTAGTTCTTCGTTGTTCTGA+TGG + chr3_1:43050220-43050239 Msa0358290:CDS 40.0%
GATGGAACTATTCTTCACAC+TGG + chr3_1:43050238-43050257 Msa0358290:CDS 40.0%
TGGAACTATTCTTCACACTG+GGG + chr3_1:43050240-43050259 Msa0358290:CDS 40.0%
TTTCAGCAACAGGAGATTCA+AGG - chr3_1:43050320-43050339 None:intergenic 40.0%
TGAATCTCCTGTTGCTGAAA+AGG + chr3_1:43050320-43050339 Msa0358290:CDS 40.0%
! GAATCAACCTTTTCAGCAAC+AGG - chr3_1:43050330-43050349 None:intergenic 40.0%
AGTAACATTGGTAAGTCACC+TGG + chr3_1:43050423-43050442 Msa0358290:intron 40.0%
GTAGTTAGTAGCAAAGATCC+AGG - chr3_1:43050444-43050463 None:intergenic 40.0%
GGATCTTTGCTACTAACTAC+TGG + chr3_1:43050444-43050463 Msa0358290:intron 40.0%
GGCTACTAACAGTTTACTTG+AGG + chr3_1:43050556-43050575 Msa0358290:intron 40.0%
AGTCCCTGTTAAGCTGAATA+TGG + chr3_1:43050631-43050650 Msa0358290:intron 40.0%
ATCACAAGCAAACATGGCTT+TGG + chr3_1:43050994-43051013 Msa0358290:intron 40.0%
AGGCACATTTCAGCTTCAAA+AGG + chr3_1:43051106-43051125 Msa0358290:CDS 40.0%
GCATCAAATCTACATCGGAT+TGG + chr3_1:43051151-43051170 Msa0358290:CDS 40.0%
CGATTTAACTGGGAGAAAGT+TGG + chr3_1:43051192-43051211 Msa0358290:CDS 40.0%
ATACTTAGAAGCAGCTTGGA+AGG + chr3_1:43051344-43051363 Msa0358290:CDS 40.0%
GTCACCAAGTGCATCAAATT+AGG - chr3_1:43051438-43051457 None:intergenic 40.0%
! AATTTGATGCACTTGGTGAC+TGG + chr3_1:43051438-43051457 Msa0358290:intron 40.0%
CCCTACTTTAACAACTTTCG+AGG + chr3_1:43052000-43052019 Msa0358290:intron 40.0%
GCCTCGAAAGTTGTTAAAGT+AGG - chr3_1:43052004-43052023 None:intergenic 40.0%
CCTTGGTAAGTTTGAAAGCA+TGG - chr3_1:43052424-43052443 None:intergenic 40.0%
CCATGCTTTCAAACTTACCA+AGG + chr3_1:43052421-43052440 Msa0358290:CDS 40.0%
GGATTGGAAGTTAGAATAGC+AGG - chr3_1:43052567-43052586 None:intergenic 40.0%
!! AAGGTGTTGCTAGAAAGGAT+TGG - chr3_1:43052583-43052602 None:intergenic 40.0%
TCAATTTGTCAGGTTATCCC+TGG + chr3_1:43052658-43052677 Msa0358290:intron 40.0%
ACATGCATATCGTGGAGAAT+TGG + chr3_1:43052774-43052793 Msa0358290:CDS 40.0%
TGGAGAATACTTGTTCCTGA+AGG + chr3_1:43053303-43053322 Msa0358290:CDS 40.0%
ACTGATGATCTTTATGCACC+AGG + chr3_1:43053455-43053474 Msa0358290:intron 40.0%
! AGTGATGGTGACAAAGCATT+TGG + chr3_1:43053670-43053689 Msa0358290:CDS 40.0%
! GACAAAGCATTTGGTACATC+CGG + chr3_1:43053679-43053698 Msa0358290:CDS 40.0%
TTCATCAAGGAAGAGTTCAC+CGG - chr3_1:43053701-43053720 None:intergenic 40.0%
TTGGCTGGAAACACCTTAAA+AGG + chr3_1:43053870-43053889 Msa0358290:CDS 40.0%
TGGCTGGAAACACCTTAAAA+GGG + chr3_1:43053871-43053890 Msa0358290:CDS 40.0%
TCACATGGAAAGAACTGTGT+CGG + chr3_1:43054007-43054026 Msa0358290:CDS 40.0%
ATCGCAATGGCAATTACTTC+GGG - chr3_1:43054074-43054093 None:intergenic 40.0%
! TCCAGGATTTTCTATCGCAA+TGG - chr3_1:43054087-43054106 None:intergenic 40.0%
CATATTGAACTGTCAACTGC+TGG + chr3_1:43054264-43054283 Msa0358290:intron 40.0%
!! ATCTGGTTGGTTCACTTTTG+TGG + chr3_1:43054288-43054307 Msa0358290:intron 40.0%
CCATGTATATATGGGATCGT+TGG - chr3_1:43054404-43054423 None:intergenic 40.0%
CCAACGATCCCATATATACA+TGG + chr3_1:43054401-43054420 Msa0358290:intron 40.0%
AAAATAGACCAGCTGAATGC+AGG - chr3_1:43054586-43054605 None:intergenic 40.0%
TCACAAAACAATGCTGGTGA+AGG + chr3_1:43054676-43054695 Msa0358290:intron 40.0%
GAAGCTAAGAAGTCTCACTT+TGG + chr3_1:43054734-43054753 Msa0358290:intron 40.0%
GAAGGCGATTTATCTGATTC+AGG + chr3_1:43055009-43055028 Msa0358290:CDS 40.0%
AGGCGATTTATCTGATTCAG+GGG + chr3_1:43055011-43055030 Msa0358290:CDS 40.0%
GTCTGAAGAAATGTCTGATG+CGG + chr3_1:43055170-43055189 Msa0358290:CDS 40.0%
!! GACATTTCTTTTGGAGACTC+TGG - chr3_1:43055198-43055217 None:intergenic 40.0%
! TCCGCATCAGACATTTCTTT+TGG - chr3_1:43055207-43055226 None:intergenic 40.0%
AATCAGCTTCTTGACTTCCT+CGG - chr3_1:43055271-43055290 None:intergenic 40.0%
CAACTTTAAATCTGTCACGG+AGG - chr3_1:43055308-43055327 None:intergenic 40.0%
AGAGATATCTCAGAGCTTGT+TGG + chr3_1:43055353-43055372 Msa0358290:CDS 40.0%
CACAAAGATTTGCATTGTCC+AGG - chr3_1:43055399-43055418 None:intergenic 40.0%
CTGGACAATGCAAATCTTTG+TGG + chr3_1:43055397-43055416 Msa0358290:CDS 40.0%
GATCAGTTTGTGAGGTACAA+AGG + chr3_1:43055540-43055559 Msa0358290:intron 40.0%
GTACGAGGGAGAAAATTTCA+TGG - chr3_1:43055623-43055642 None:intergenic 40.0%
CTCAAGGTCAATTTAGTACG+AGG - chr3_1:43055638-43055657 None:intergenic 40.0%
CTCGTACTAAATTGACCTTG+AGG + chr3_1:43055636-43055655 Msa0358290:intron 40.0%
GCGTGAAACTACAACTTACA+TGG + chr3_1:43055850-43055869 Msa0358290:intron 40.0%
AGCTGTGTGAAGCAATTGAA+GGG - chr3_1:43055899-43055918 None:intergenic 40.0%
TAGCTGTGTGAAGCAATTGA+AGG - chr3_1:43055900-43055919 None:intergenic 40.0%
TTCAATTGCTTCACACAGCT+AGG + chr3_1:43055899-43055918 Msa0358290:intron 40.0%
AGTCGCCAGCAATGATAAAA+GGG - chr3_1:43055998-43056017 None:intergenic 40.0%
AAGTCGCCAGCAATGATAAA+AGG - chr3_1:43055999-43056018 None:intergenic 40.0%
TTGGCAATATCTTGAGGACA+TGG + chr3_1:43056328-43056347 Msa0358290:CDS 40.0%
AACACCGGCAACAAATTGAA+TGG + chr3_1:43056373-43056392 Msa0358290:exon 40.0%
CAAATTGAATGGAAATGCGG+TGG + chr3_1:43056384-43056403 Msa0358290:exon 40.0%
GTTCTGGTAACATGGACAAT+TGG + chr3_1:43056515-43056534 Msa0358290:three_prime_UTR 40.0%
! CTTAGCTTGGGTTAGAATCA+AGG - chr3_1:43056602-43056621 None:intergenic 40.0%
TAACCCAAGCTAAGCTATCA+AGG + chr3_1:43056608-43056627 Msa0358290:three_prime_UTR 40.0%
AACCCAAGCTAAGCTATCAA+GGG + chr3_1:43056609-43056628 Msa0358290:three_prime_UTR 40.0%
! TTCCCTTGATAGCTTAGCTT+GGG - chr3_1:43056614-43056633 None:intergenic 40.0%
! TTTCCCTTGATAGCTTAGCT+TGG - chr3_1:43056615-43056634 None:intergenic 40.0%
!!! AGAGTATATGGGTTTTAGGG+GGG + chr3_1:43056634-43056653 Msa0358290:three_prime_UTR 40.0%
GAAACAAAAATATTGGGCCG+TGG - chr3_1:43056688-43056707 None:intergenic 40.0%
TGTAAATGTCTTCTGCGTTG+TGG + chr3_1:43056786-43056805 Msa0358290:three_prime_UTR 40.0%
!! AGAGTCTGGTTGGTTTAGAG+CGG - chr3_1:43047969-43047988 None:intergenic 45.0%
AATGTTGTTGTCGCTACCAG+AGG - chr3_1:43048016-43048035 None:intergenic 45.0%
!! AGAGATGGAAGCATTACCCA+AGG - chr3_1:43048784-43048803 None:intergenic 45.0%
TTCCATCTCTATTGGACTGC+TGG + chr3_1:43048794-43048813 Msa0358290:intron 45.0%
!! AATTCTACAGTTGGTGGCTC+GGG + chr3_1:43049060-43049079 Msa0358290:intron 45.0%
!!! ATAGGTTTTCTGGCTACCTG+TGG + chr3_1:43049116-43049135 Msa0358290:intron 45.0%
CAAAGAGGCTGCTGCATAAT+AGG + chr3_1:43049510-43049529 Msa0358290:intron 45.0%
GGTGTATTGGAATCCAATGC+TGG - chr3_1:43049753-43049772 None:intergenic 45.0%
GCCGAATACCTCCATTGTAA+AGG - chr3_1:43049790-43049809 None:intergenic 45.0%
TATTCTGTCCATTGCAGTCC+AGG + chr3_1:43050029-43050048 Msa0358290:intron 45.0%
ATTCTGTCCATTGCAGTCCA+GGG + chr3_1:43050030-43050049 Msa0358290:intron 45.0%
AGAACTAGTCCACAACAGTC+AGG - chr3_1:43050208-43050227 None:intergenic 45.0%
CTATTCTTCACACTGGGGAT+TGG + chr3_1:43050245-43050264 Msa0358290:CDS 45.0%
ATTGACGAGACACCACTTGA+TGG + chr3_1:43050355-43050374 Msa0358290:CDS 45.0%
TTGACGAGACACCACTTGAT+GGG + chr3_1:43050356-43050375 Msa0358290:CDS 45.0%
! TGGGAAAGTTTTTGATCGGG+AGG + chr3_1:43050375-43050394 Msa0358290:CDS 45.0%
! GGGAAAGTTTTTGATCGGGA+GGG + chr3_1:43050376-43050395 Msa0358290:CDS 45.0%
! TTTTGATCGGGAGGGTTTAG+AGG + chr3_1:43050384-43050403 Msa0358290:CDS 45.0%
TCAACAAATGTGCTCTCACC+TGG + chr3_1:43051043-43051062 Msa0358290:CDS 45.0%
GACAACCAGTGAATCTGTTG+TGG + chr3_1:43051069-43051088 Msa0358290:CDS 45.0%
ATCTGCCACAACAGATTCAC+TGG - chr3_1:43051077-43051096 None:intergenic 45.0%
!! AAAGCTGCTGCCGATTTAAC+TGG + chr3_1:43051181-43051200 Msa0358290:CDS 45.0%
!! AAGCTGCTGCCGATTTAACT+GGG + chr3_1:43051182-43051201 Msa0358290:CDS 45.0%
GGACATACTTAGAAGCAGCT+TGG + chr3_1:43051340-43051359 Msa0358290:CDS 45.0%
TTAGAAGCAGCTTGGAAGGA+TGG + chr3_1:43051348-43051367 Msa0358290:CDS 45.0%
TCCATTTGACCCATCAACTC+TGG + chr3_1:43051377-43051396 Msa0358290:CDS 45.0%
!! ACCAGAGTTGATGGGTCAAA+TGG - chr3_1:43051381-43051400 None:intergenic 45.0%
TATGGTCCATGTGTTGGGAT+GGG - chr3_1:43051487-43051506 None:intergenic 45.0%
GACTGTATGGTCCATGTGTT+GGG - chr3_1:43051492-43051511 None:intergenic 45.0%
TGACTGTATGGTCCATGTGT+TGG - chr3_1:43051493-43051512 None:intergenic 45.0%
TAGCCTTCAGCATGACTGTA+TGG - chr3_1:43051505-43051524 None:intergenic 45.0%
AGCAGAAATGCAGTGCATGT+AGG + chr3_1:43051558-43051577 Msa0358290:intron 45.0%
! TGTAGGCAAGTCACTGGTTA+TGG + chr3_1:43051575-43051594 Msa0358290:CDS 45.0%
AGTAGGGAGTAAATACTGCC+TGG - chr3_1:43051987-43052006 None:intergenic 45.0%
ACATCTGGACATGCATATCG+TGG + chr3_1:43052766-43052785 Msa0358290:CDS 45.0%
GAGGTGATTGTCTATCTTCG+TGG + chr3_1:43053044-43053063 Msa0358290:intron 45.0%
CAAGTGATTCATGCTCCTTC+AGG - chr3_1:43053321-43053340 None:intergenic 45.0%
! CTGAAGGAGCATGAATCACT+TGG + chr3_1:43053319-43053338 Msa0358290:CDS 45.0%
TATCACAAGATCTGTCTGGG+AGG - chr3_1:43053384-43053403 None:intergenic 45.0%
TACCACAAGATGTCTATGGC+TGG + chr3_1:43053905-43053924 Msa0358290:CDS 45.0%
AGATGTCTATGGCTGGACAA+AGG + chr3_1:43053912-43053931 Msa0358290:CDS 45.0%
GATGTCTATGGCTGGACAAA+GGG + chr3_1:43053913-43053932 Msa0358290:CDS 45.0%
AGATGTTGAGGAAGATGGTG+AGG + chr3_1:43054030-43054049 Msa0358290:CDS 45.0%
! AAGATGGTGAGGAAGTACAG+TGG + chr3_1:43054041-43054060 Msa0358290:CDS 45.0%
! TGAGGAAGTACAGTGGTAAG+CGG + chr3_1:43054048-43054067 Msa0358290:CDS 45.0%
GCCATTGCGATAGAAAATCC+TGG + chr3_1:43054083-43054102 Msa0358290:CDS 45.0%
TCATCAGCAAAAACTGCTCC+AGG - chr3_1:43054104-43054123 None:intergenic 45.0%
TGATATTCCAGGACCAACGT+GGG - chr3_1:43054153-43054172 None:intergenic 45.0%
TTGATATTCCAGGACCAACG+TGG - chr3_1:43054154-43054173 None:intergenic 45.0%
! GTTACCTCTTGTTTGCAGTG+TGG - chr3_1:43054222-43054241 None:intergenic 45.0%
GTTATTGGCATGTGACACTC+AGG + chr3_1:43054558-43054577 Msa0358290:intron 45.0%
!! GATGATGGCATTGACACAGA+AGG + chr3_1:43054949-43054968 Msa0358290:intron 45.0%
GAGAAAGAGACCACTACAAC+TGG + chr3_1:43054982-43055001 Msa0358290:CDS 45.0%
! CAGGGGAATCGGATGAATTT+TGG + chr3_1:43055028-43055047 Msa0358290:CDS 45.0%
AATGACCACAAGTCTGAGCT+AGG + chr3_1:43056462-43056481 Msa0358290:three_prime_UTR 45.0%
AAATGTCTTCTGCGTTGTGG+TGG + chr3_1:43056789-43056808 Msa0358290:three_prime_UTR 45.0%
!! TCTGGTTGGTTTAGAGCGGA+GGG - chr3_1:43047965-43047984 None:intergenic 50.0%
TGAAGCTGAAACGGAGAGTC+TGG - chr3_1:43047983-43048002 None:intergenic 50.0%
CCATAAGCTCTCTCTCAGGA+TGG - chr3_1:43048429-43048448 None:intergenic 50.0%
CCATCCTGAGAGAGAGCTTA+TGG + chr3_1:43048426-43048445 Msa0358290:intron 50.0%
ATCATATCGGTGCGTTGCCT+TGG + chr3_1:43048764-43048783 Msa0358290:CDS 50.0%
TCATATCGGTGCGTTGCCTT+GGG + chr3_1:43048765-43048784 Msa0358290:CDS 50.0%
AGCCAGCAGTCCAATAGAGA+TGG - chr3_1:43048799-43048818 None:intergenic 50.0%
TCATCAGGTCATCCCAGCAT+TGG + chr3_1:43049737-43049756 Msa0358290:intron 50.0%
TCTTCACACTGGGGATTGGA+AGG + chr3_1:43050249-43050268 Msa0358290:CDS 50.0%
! GAAGAGCATGAGAGTTTCGC+AGG + chr3_1:43050535-43050554 Msa0358290:intron 50.0%
! TTGTGGTGATGCTCTCTGAG+CGG + chr3_1:43050599-43050618 Msa0358290:intron 50.0%
TTCATGGTCAGTTGCAGTGC+TGG + chr3_1:43050656-43050675 Msa0358290:intron 50.0%
! GTGCTGGTAGATCTGCTCAA+AGG + chr3_1:43050672-43050691 Msa0358290:intron 50.0%
CAAATGTGCTCTCACCTGGA+AGG + chr3_1:43051047-43051066 Msa0358290:CDS 50.0%
! GATTCACTGGTTGTCCTTCC+AGG - chr3_1:43051064-43051083 None:intergenic 50.0%
AGCAGCTTGGAAGGATGGAA+AGG + chr3_1:43051353-43051372 Msa0358290:CDS 50.0%
ATGGTCCATGTGTTGGGATG+GGG - chr3_1:43051486-43051505 None:intergenic 50.0%
GTATGGTCCATGTGTTGGGA+TGG - chr3_1:43051488-43051507 None:intergenic 50.0%
GGACCATACAGTCATGCTGA+AGG + chr3_1:43051499-43051518 Msa0358290:intron 50.0%
AGTGCATGTAGGCAAGTCAC+TGG + chr3_1:43051569-43051588 Msa0358290:CDS 50.0%
! GCAAGATTTAAGGCAGCACG+TGG - chr3_1:43052386-43052405 None:intergenic 50.0%
TCACACGGGACTCATTACCA+GGG - chr3_1:43052678-43052697 None:intergenic 50.0%
ATCACACGGGACTCATTACC+AGG - chr3_1:43052679-43052698 None:intergenic 50.0%
! TGGTAATGAGTCCCGTGTGA+TGG + chr3_1:43052678-43052697 Msa0358290:CDS 50.0%
GTCCAGCCATAGACATCTTG+TGG - chr3_1:43053910-43053929 None:intergenic 50.0%
!! TGAGCCAGTGGACTTTTGAC+GGG - chr3_1:43053990-43054009 None:intergenic 50.0%
!! GTGAGCCAGTGGACTTTTGA+CGG - chr3_1:43053991-43054010 None:intergenic 50.0%
!! CAAAAGTCCACTGGCTCACA+TGG + chr3_1:43053992-43054011 Msa0358290:CDS 50.0%
GTTCTTTCCATGTGAGCCAG+TGG - chr3_1:43054002-43054021 None:intergenic 50.0%
GAACTGTGTCGGAGATGTTG+AGG + chr3_1:43054018-43054037 Msa0358290:CDS 50.0%
GTCGGAGATGTTGAGGAAGA+TGG + chr3_1:43054025-43054044 Msa0358290:CDS 50.0%
TTGTCTGGCAAATCCCACGT+TGG + chr3_1:43054137-43054156 Msa0358290:CDS 50.0%
!! TTGTTTGCAGTGTGGTGGAC+TGG - chr3_1:43054214-43054233 None:intergenic 50.0%
TCCACCACACTGCAAACAAG+AGG + chr3_1:43054215-43054234 Msa0358290:CDS 50.0%
! ACCTCTTGTTTGCAGTGTGG+TGG - chr3_1:43054219-43054238 None:intergenic 50.0%
AACTGTCAACTGCTGGGATC+TGG + chr3_1:43054271-43054290 Msa0358290:intron 50.0%
CATGGTAAAAGCAGAGTGGC+AGG + chr3_1:43054419-43054438 Msa0358290:intron 50.0%
GGGTGTAAATCTTGAGACGG+TGG + chr3_1:43054755-43054774 Msa0358290:intron 50.0%
ACCACTACAACTGGAGCTGA+AGG + chr3_1:43054991-43055010 Msa0358290:CDS 50.0%
TGAAAGGAAGGATGGCTCTC+TGG + chr3_1:43055328-43055347 Msa0358290:CDS 50.0%
GAAAGGAAGGATGGCTCTCT+GGG + chr3_1:43055329-43055348 Msa0358290:CDS 50.0%
!! TCTCAGAGCTTGTTGGCTGA+TGG + chr3_1:43055360-43055379 Msa0358290:CDS 50.0%
!! CTCAGAGCTTGTTGGCTGAT+GGG + chr3_1:43055361-43055380 Msa0358290:CDS 50.0%
! ACAACTTACATGGCGGAGTG+AGG + chr3_1:43055860-43055879 Msa0358290:intron 50.0%
TCACATCCAATACACGCCCA+CGG + chr3_1:43056668-43056687 Msa0358290:three_prime_UTR 50.0%
! TTTAGAGCGGAGGGAGAGGA+GGG - chr3_1:43047956-43047975 None:intergenic 55.0%
! TTGGTTTAGAGCGGAGGGAG+AGG - chr3_1:43047960-43047979 None:intergenic 55.0%
!! GTCTGGTTGGTTTAGAGCGG+AGG - chr3_1:43047966-43047985 None:intergenic 55.0%
GCTGAAACGGAGAGTCTGGT+TGG - chr3_1:43047979-43047998 None:intergenic 55.0%
GCTTCAACACTCTCAGCCTC+TGG + chr3_1:43047997-43048016 Msa0358290:CDS 55.0%
CTTGTAGCGAAGTGTGCCAC+AGG - chr3_1:43049135-43049154 None:intergenic 55.0%
GTAGTCCCAAGTCCCAACCA+AGG - chr3_1:43049196-43049215 None:intergenic 55.0%
TGTGGGCCTCACAAGTCACA+AGG + chr3_1:43049405-43049424 Msa0358290:intron 55.0%
CTGGGATGACCTGATGAACC+AGG - chr3_1:43049734-43049753 None:intergenic 55.0%
TGTCCATTGCAGTCCAGGGA+AGG + chr3_1:43050034-43050053 Msa0358290:intron 55.0%
TCACCTTCCCTGGACTGCAA+TGG - chr3_1:43050040-43050059 None:intergenic 55.0%
TGGTCCATGTGTTGGGATGG+GGG - chr3_1:43051485-43051504 None:intergenic 55.0%
GTGGCCCTGAGTATGCTCTT+TGG + chr3_1:43053577-43053596 Msa0358290:intron 55.0%
! GGGGCCAAAGAGCATACTCA+GGG - chr3_1:43053584-43053603 None:intergenic 55.0%
! AGGGGCCAAAGAGCATACTC+AGG - chr3_1:43053585-43053604 None:intergenic 55.0%
CTGTCCCGTCAAAAGTCCAC+TGG + chr3_1:43053983-43054002 Msa0358290:CDS 55.0%
GTCAACTGCTGGGATCTGGT+TGG + chr3_1:43054275-43054294 Msa0358290:intron 55.0%
CAGAGTGGCAGGCAACAATC+AGG + chr3_1:43054430-43054449 Msa0358290:intron 55.0%
CTCAGGTTCCTGCATTCAGC+TGG + chr3_1:43054575-43054594 Msa0358290:intron 55.0%
GCCTTCAGCTCCAGTTGTAG+TGG - chr3_1:43054995-43055014 None:intergenic 55.0%
GATGGGATCAGCAGAAGTCC+TGG + chr3_1:43055378-43055397 Msa0358290:CDS 55.0%
GGTCACCTAGCTCAGACTTG+TGG - chr3_1:43056470-43056489 None:intergenic 55.0%
CAAGTCTGAGCTAGGTGACC+AGG + chr3_1:43056470-43056489 Msa0358290:three_prime_UTR 55.0%
GGAGTGAGGAAGTGGAGGGA+GGG - chr3_1:43047935-43047954 None:intergenic 60.0%
GGAGGGAGTGAGGAAGTGGA+GGG - chr3_1:43047939-43047958 None:intergenic 60.0%
AGGAGGGAGTGAGGAAGTGG+AGG - chr3_1:43047940-43047959 None:intergenic 60.0%
GAGAGGAGGGAGTGAGGAAG+TGG - chr3_1:43047943-43047962 None:intergenic 60.0%
! GTTTAGAGCGGAGGGAGAGG+AGG - chr3_1:43047957-43047976 None:intergenic 60.0%
CTACCCCCCATCCCAACACA+TGG + chr3_1:43051478-43051497 Msa0358290:intron 60.0%
GGTCCATGTGTTGGGATGGG+GGG - chr3_1:43051484-43051503 None:intergenic 60.0%
GGCAAATCCCACGTTGGTCC+TGG + chr3_1:43054143-43054162 Msa0358290:CDS 60.0%
ATTGGGCCGTGGGCGTGTAT+TGG - chr3_1:43056677-43056696 None:intergenic 60.0%
GTGAGGAAGTGGAGGGAGGG+TGG - chr3_1:43047932-43047951 None:intergenic 65.0%
GGGAGTGAGGAAGTGGAGGG+AGG - chr3_1:43047936-43047955 None:intergenic 65.0%
CGGAGGGAGAGGAGGGAGTG+AGG - chr3_1:43047949-43047968 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 43047916 43056838 43047916 ID=Msa0358290;Name=Msa0358290
chr3_1 mRNA 43047916 43056838 43047916 ID=Msa0358290-mRNA-1;Parent=Msa0358290;Name=Msa0358290-mRNA-1;_AED=0.11;_eAED=0.12;_QI=0|0.8|0.68|0.93|0.86|0.93|16|447|959
chr3_1 exon 43047916 43048315 43047916 ID=Msa0358290-mRNA-1:exon:7513;Parent=Msa0358290-mRNA-1
chr3_1 exon 43048626 43048786 43048626 ID=Msa0358290-mRNA-1:exon:7514;Parent=Msa0358290-mRNA-1
chr3_1 exon 43049744 43049800 43049744 ID=Msa0358290-mRNA-1:exon:7515;Parent=Msa0358290-mRNA-1
chr3_1 exon 43050079 43050432 43050079 ID=Msa0358290-mRNA-1:exon:7516;Parent=Msa0358290-mRNA-1
chr3_1 exon 43051031 43051213 43051031 ID=Msa0358290-mRNA-1:exon:7517;Parent=Msa0358290-mRNA-1
chr3_1 exon 43051318 43051398 43051318 ID=Msa0358290-mRNA-1:exon:7518;Parent=Msa0358290-mRNA-1
chr3_1 exon 43051563 43051622 43051563 ID=Msa0358290-mRNA-1:exon:7519;Parent=Msa0358290-mRNA-1
chr3_1 exon 43052212 43052277 43052212 ID=Msa0358290-mRNA-1:exon:7520;Parent=Msa0358290-mRNA-1
chr3_1 exon 43052377 43052469 43052377 ID=Msa0358290-mRNA-1:exon:7521;Parent=Msa0358290-mRNA-1
chr3_1 exon 43052670 43052795 43052670 ID=Msa0358290-mRNA-1:exon:7522;Parent=Msa0358290-mRNA-1
chr3_1 exon 43053256 43053369 43053256 ID=Msa0358290-mRNA-1:exon:7523;Parent=Msa0358290-mRNA-1
chr3_1 exon 43053477 43053572 43053477 ID=Msa0358290-mRNA-1:exon:7524;Parent=Msa0358290-mRNA-1
chr3_1 exon 43053661 43053758 43053661 ID=Msa0358290-mRNA-1:exon:7525;Parent=Msa0358290-mRNA-1
chr3_1 exon 43053836 43054236 43053836 ID=Msa0358290-mRNA-1:exon:7526;Parent=Msa0358290-mRNA-1
chr3_1 exon 43054950 43055443 43054950 ID=Msa0358290-mRNA-1:exon:7527;Parent=Msa0358290-mRNA-1
chr3_1 exon 43056296 43056838 43056296 ID=Msa0358290-mRNA-1:exon:7528;Parent=Msa0358290-mRNA-1
chr3_1 CDS 43047916 43048315 43047916 ID=Msa0358290-mRNA-1:cds;Parent=Msa0358290-mRNA-1
chr3_1 CDS 43048626 43048786 43048626 ID=Msa0358290-mRNA-1:cds;Parent=Msa0358290-mRNA-1
chr3_1 CDS 43049744 43049800 43049744 ID=Msa0358290-mRNA-1:cds;Parent=Msa0358290-mRNA-1
chr3_1 CDS 43050079 43050432 43050079 ID=Msa0358290-mRNA-1:cds;Parent=Msa0358290-mRNA-1
chr3_1 CDS 43051031 43051213 43051031 ID=Msa0358290-mRNA-1:cds;Parent=Msa0358290-mRNA-1
chr3_1 CDS 43051318 43051398 43051318 ID=Msa0358290-mRNA-1:cds;Parent=Msa0358290-mRNA-1
chr3_1 CDS 43051563 43051622 43051563 ID=Msa0358290-mRNA-1:cds;Parent=Msa0358290-mRNA-1
chr3_1 CDS 43052212 43052277 43052212 ID=Msa0358290-mRNA-1:cds;Parent=Msa0358290-mRNA-1
chr3_1 CDS 43052377 43052469 43052377 ID=Msa0358290-mRNA-1:cds;Parent=Msa0358290-mRNA-1
chr3_1 CDS 43052670 43052795 43052670 ID=Msa0358290-mRNA-1:cds;Parent=Msa0358290-mRNA-1
chr3_1 CDS 43053256 43053369 43053256 ID=Msa0358290-mRNA-1:cds;Parent=Msa0358290-mRNA-1
chr3_1 CDS 43053477 43053572 43053477 ID=Msa0358290-mRNA-1:cds;Parent=Msa0358290-mRNA-1
chr3_1 CDS 43053661 43053758 43053661 ID=Msa0358290-mRNA-1:cds;Parent=Msa0358290-mRNA-1
chr3_1 CDS 43053836 43054236 43053836 ID=Msa0358290-mRNA-1:cds;Parent=Msa0358290-mRNA-1
chr3_1 CDS 43054950 43055443 43054950 ID=Msa0358290-mRNA-1:cds;Parent=Msa0358290-mRNA-1
chr3_1 CDS 43056296 43056391 43056296 ID=Msa0358290-mRNA-1:cds;Parent=Msa0358290-mRNA-1
chr3_1 three_prime_UTR 43056392 43056838 43056392 ID=Msa0358290-mRNA-1:three_prime_utr;Parent=Msa0358290-mRNA-1
Gene Sequence

>Msa0358290

ATGGCTACTCTCACCACCCTCCCTCCACTTCCTCACTCCCTCCTCTCCCTCCGCTCTAAACCAACCAGACTCTCCGTTTCAGCTTCAACACTCTCAGCCTCTGGTAGCGACAACAACATTTACTGTATTTCATGCAATTACTATATACTATATAGTTTTAGTTTACTATGCTGTTATCATGTAATGGAAATATCTAATTGGAAGTTATTTTTGAATGCACGAGTAGGAAATGATGGATCTAATTCTAGAGTACCACACAAAAGAAGGAGAAGAATTGAAGGTCCAAGAAAAAGTATGGAAGATTCTGTTCAACGTAGGATGGAGCAATTTTATGAAGGAAACGACGGACCGCCATTACGTGTTCTTCCTATTGGTGGTTTGGGTGAAATTGGAATGAATTTAATTTTTGTATGTATGCATTTGGTGCGATTTTTCAGCTATGACGACCTTGGAGTACAAAAGATTATACCTGATACAACATTTATAAGAAAATGGAGCCACAAAATTGAAGCACTTGTTATAACACATGGTCATGAAGATCATATCGGTGCGTTGCCTTGGGTCATCCCAGCATTGGATTCCAATACACCAATTTTTGCATCTTCCTTTACAATGGAGCTTATAAAAAAACGTTTGAAGGAGCATGGCATTTTCCTTACATCTAGACTCAAAATATTTAGAACAAAGAACAAGTTTGTCGCTGGGCCATTTGAGATAGAACCAATCAGGGTGACTCATTCTATTCCTGACTGTTGTGGACTAGTTCTTCGTTGTTCTGATGGAACTATTCTTCACACTGGGGATTGGAAGGTCAGAATTTTACTTTTAATTCTCAGTGCATTGTACCTTTCATTTACCTTGAATCTCCTGTTGCTGAAAAGGTTGATTCATCAGATTGACGAGACACCACTTGATGGGAAAGTTTTTGATCGGGAGGGTTTAGAGGAACTCTCTAAAGAAGGAGTAACATTGATGATGAGTGATTCAACAAATGTGCTCTCACCTGGAAGGACAACCAGTGAATCTGTTGTGGCAGATTCATTATTGAGGCACATTTCAGCTTCAAAAGGAAGGGTTATTACAACCCAGTTTGCATCAAATCTACATCGGATTGGAAGTGTCAAAGCTGCTGCCGATTTAACTGGGAGAAAGTTGGTATTTGTTGGCATGTCTTTAAGGACATACTTAGAAGCAGCTTGGAAGGATGGAAAGGCTCCATTTGACCCATCAACTCTGAAATGCAGTGCATGTAGGCAAGTCACTGGTTATGGTTTTACAGAAGTTGGACAGAATACTGTGAAAGCAGAGGATATTGATGCTTATGCACCTAAGGATCTGCTTATTGTAACAACTGGCTCTCAAGCAGAGCCACGTGCTGCCTTAAATCTTGCATCTTTTGGAAGTAGCCATGCTTTCAAACTTACCAAGGAAGATATTGTTTTGTATTCAGCTAAGGTTATCCCTGGTAATGAGTCCCGTGTGATGGAAATGATGAATCGCATATCAGAGATTGGATCAACAATAGTTATGGGGAGAAATGAAAACTTACACACATCTGGACATGCATATCGTGGAGAATTGGAGGAAGTACTTAGAATTGTGAAGCCGCAACATTTTCTTCCTGTACATGGAGAATACTTGTTCCTGAAGGAGCATGAATCACTTGGAAAATCAACTGGCATTCGGCATACTGCTGTTATTAAGAATGGAGAGATGCTTGGTGTTTCACACTTGAGAAATAGAAGGGTTCTTTCTAATGGTTTCATTTCCCTTGGAAAAGAAAATTTACAGTTGAAATATAGTGATGGTGACAAAGCATTTGGTACATCCGGTGAACTCTTCCTTGATGAAAGAATGAGAATTGCATTAGATGGCATCATTGTGATTAGCATGGAAATATTTCGCCCTAAAAATTTAGAAAGTTTGGCTGGAAACACCTTAAAAGGGAAGATAAGAATTACCACAAGATGTCTATGGCTGGACAAAGGGAAGCTGTTAGATGCACTATATAAAGCTGCTCATGCAGCTCTTTCTAGCTGTCCCGTCAAAAGTCCACTGGCTCACATGGAAAGAACTGTGTCGGAGATGTTGAGGAAGATGGTGAGGAAGTACAGTGGTAAGCGGCCCGAAGTAATTGCCATTGCGATAGAAAATCCTGGAGCAGTTTTTGCTGATGAGATAAACACAAAATTGTCTGGCAAATCCCACGTTGGTCCTGGAATATCAACATTTAGAAGATCCATGGATGAACATAAAAAGGAAAACCAGTCCACCACACTGCAAACAAGAGATGATGGCATTGACACAGAAGGACTATTACTTGAGAAAGAGACCACTACAACTGGAGCTGAAGGCGATTTATCTGATTCAGGGGAATCGGATGAATTTTGGAAGCCATTCATTGCATCATCAGTTGAGAAATCAATCAAAGCAAACAATGGTTATGTTTCACGAAAGGAGCATAAGTCAAATATAAAGCAAGATGATTCTGAAGACATAGATGAAGCCAAGTCTGAAGAAATGTCTGATGCGGAGCCAGAGTCTCCAAAAGAAATGTCTGATGCGGAGCCAGAGTCTCCAAAATCAGTAAAGAAAAATAAATGGAAAACCGAGGAAGTCAAGAAGCTGATTGATTTGCGGAGTGACCTCCGTGACAGATTTAAAGTTGTGAAAGGAAGGATGGCTCTCTGGGAAGAGATATCTCAGAGCTTGTTGGCTGATGGGATCAGCAGAAGTCCTGGACAATGCAAATCTTTGTGGACATCTTTGGCACTTAAATATGAGGAGATCAAGAATGGGAAAGATAGCAGAAAAAATTGGCAATATCTTGAGGACATGGAAAGGATATTGTCTAGTGATGAAACACCGGCAACAAATTGA
Protein sequence

>Msa0358290

MATLTTLPPLPHSLLSLRSKPTRLSVSASTLSASGSDNNIYCISCNYYILYSFSLLCCYHVMEISNWKLFLNARVGNDGSNSRVPHKRRRRIEGPRKSMEDSVQRRMEQFYEGNDGPPLRVLPIGGLGEIGMNLIFVCMHLVRFFSYDDLGVQKIIPDTTFIRKWSHKIEALVITHGHEDHIGALPWVIPALDSNTPIFASSFTMELIKKRLKEHGIFLTSRLKIFRTKNKFVAGPFEIEPIRVTHSIPDCCGLVLRCSDGTILHTGDWKVRILLLILSALYLSFTLNLLLLKRLIHQIDETPLDGKVFDREGLEELSKEGVTLMMSDSTNVLSPGRTTSESVVADSLLRHISASKGRVITTQFASNLHRIGSVKAAADLTGRKLVFVGMSLRTYLEAAWKDGKAPFDPSTLKCSACRQVTGYGFTEVGQNTVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASFGSSHAFKLTKEDIVLYSAKVIPGNESRVMEMMNRISEIGSTIVMGRNENLHTSGHAYRGELEEVLRIVKPQHFLPVHGEYLFLKEHESLGKSTGIRHTAVIKNGEMLGVSHLRNRRVLSNGFISLGKENLQLKYSDGDKAFGTSGELFLDERMRIALDGIIVISMEIFRPKNLESLAGNTLKGKIRITTRCLWLDKGKLLDALYKAAHAALSSCPVKSPLAHMERTVSEMLRKMVRKYSGKRPEVIAIAIENPGAVFADEINTKLSGKSHVGPGISTFRRSMDEHKKENQSTTLQTRDDGIDTEGLLLEKETTTTGAEGDLSDSGESDEFWKPFIASSVEKSIKANNGYVSRKEHKSNIKQDDSEDIDEAKSEEMSDAEPESPKEMSDAEPESPKSVKKNKWKTEEVKKLIDLRSDLRDRFKVVKGRMALWEEISQSLLADGISRSPGQCKSLWTSLALKYEEIKNGKDSRKNWQYLEDMERILSSDETPATN*