Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339480 | XP_003597341.1 | 91.379 | 58 | 5 | 0 | 3 | 60 | 14 | 71 | 6.31e-30 | 110 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339480 | sp|Q9FFZ6|RBP11_ARATH | 48.333 | 60 | 31 | 0 | 2 | 61 | 40 | 99 | 6.12e-12 | 59.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003890 | Msa0339480 | 0.803736 | 3.023727e-49 | -8.615850e-47 |
| Msa0021510 | Msa0339480 | 0.804143 | 2.488340e-49 | -8.615850e-47 |
| Msa0028420 | Msa0339480 | 0.803374 | 3.593903e-49 | -8.615850e-47 |
| Msa0029270 | Msa0339480 | 0.833799 | 4.332431e-56 | -8.615850e-47 |
| Msa0032090 | Msa0339480 | 0.854368 | 1.289257e-61 | -8.615850e-47 |
| Msa0032430 | Msa0339480 | 0.850782 | 1.359191e-60 | -8.615850e-47 |
| Msa0032580 | Msa0339480 | 0.819972 | 8.768410e-53 | -8.615850e-47 |
| Msa0040690 | Msa0339480 | 0.829815 | 4.166843e-55 | -8.615850e-47 |
| Msa0063890 | Msa0339480 | 0.835036 | 2.119275e-56 | -8.615850e-47 |
| Msa0074320 | Msa0339480 | 0.803015 | 4.264871e-49 | -8.615850e-47 |
| Msa0078900 | Msa0339480 | 0.800777 | 1.229288e-48 | -8.615850e-47 |
| Msa0079380 | Msa0339480 | 0.859257 | 4.688417e-63 | -8.615850e-47 |
| Msa0080200 | Msa0339480 | 0.806254 | 8.993198e-50 | -8.615850e-47 |
| Msa0084380 | Msa0339480 | 0.806336 | 8.645283e-50 | -8.615850e-47 |
| Msa0089630 | Msa0339480 | 0.802586 | 5.228581e-49 | -8.615850e-47 |
| Msa0094120 | Msa0339480 | 0.813094 | 3.045506e-51 | -8.615850e-47 |
| Msa0101440 | Msa0339480 | 0.836306 | 1.011195e-56 | -8.615850e-47 |
| Msa0101700 | Msa0339480 | 0.804557 | 2.040100e-49 | -8.615850e-47 |
| Msa0124060 | Msa0339480 | 0.842656 | 2.262989e-58 | -8.615850e-47 |
| Msa0127050 | Msa0339480 | 0.835240 | 1.882675e-56 | -8.615850e-47 |
| Msa0136070 | Msa0339480 | 0.822290 | 2.564285e-53 | -8.615850e-47 |
| Msa0136100 | Msa0339480 | 0.807929 | 3.975687e-50 | -8.615850e-47 |
| Msa0145440 | Msa0339480 | 0.815077 | 1.112239e-51 | -8.615850e-47 |
| Msa0150820 | Msa0339480 | 0.803670 | 3.121054e-49 | -8.615850e-47 |
| Msa0160550 | Msa0339480 | 0.839079 | 1.963313e-57 | -8.615850e-47 |
| Msa0165210 | Msa0339480 | 0.803906 | 2.787414e-49 | -8.615850e-47 |
| Msa0165220 | Msa0339480 | 0.810270 | 1.252857e-50 | -8.615850e-47 |
| Msa0168500 | Msa0339480 | 0.844096 | 9.342316e-59 | -8.615850e-47 |
| Msa0169310 | Msa0339480 | 0.822102 | 2.834965e-53 | -8.615850e-47 |
| Msa0171540 | Msa0339480 | 0.809803 | 1.579903e-50 | -8.615850e-47 |
| Msa0172070 | Msa0339480 | 0.852333 | 4.945118e-61 | -8.615850e-47 |
| Msa0172970 | Msa0339480 | 0.826592 | 2.492431e-54 | -8.615850e-47 |
| Msa0180500 | Msa0339480 | 0.802145 | 6.446779e-49 | -8.615850e-47 |
| Msa0187690 | Msa0339480 | 0.815269 | 1.007775e-51 | -8.615850e-47 |
| Msa0189010 | Msa0339480 | 0.808152 | 3.563584e-50 | -8.615850e-47 |
| Msa0192510 | Msa0339480 | 0.807373 | 5.218146e-50 | -8.615850e-47 |
| Msa0197660 | Msa0339480 | 0.807638 | 4.584053e-50 | -8.615850e-47 |
| Msa0211150 | Msa0339480 | 0.822385 | 2.437000e-53 | -8.615850e-47 |
| Msa0220720 | Msa0339480 | 0.804500 | 2.097235e-49 | -8.615850e-47 |
| Msa0225740 | Msa0339480 | 0.813852 | 2.075414e-51 | -8.615850e-47 |
| Msa0239800 | Msa0339480 | 0.806552 | 7.783647e-50 | -8.615850e-47 |
| Msa0260680 | Msa0339480 | 0.826795 | 2.229203e-54 | -8.615850e-47 |
| Msa0262340 | Msa0339480 | 0.810057 | 1.392574e-50 | -8.615850e-47 |
| Msa0264150 | Msa0339480 | 0.805745 | 1.151012e-49 | -8.615850e-47 |
| Msa0279700 | Msa0339480 | 0.817003 | 4.130133e-52 | -8.615850e-47 |
| Msa0279790 | Msa0339480 | 0.815268 | 1.008394e-51 | -8.615850e-47 |
| Msa0280090 | Msa0339480 | 0.820329 | 7.264569e-53 | -8.615850e-47 |
| Msa0291540 | Msa0339480 | 0.801537 | 8.594746e-49 | -8.615850e-47 |
| Msa0292400 | Msa0339480 | 0.826134 | 3.204790e-54 | -8.615850e-47 |
| Msa0297050 | Msa0339480 | 0.805522 | 1.281983e-49 | -8.615850e-47 |
| Msa0299870 | Msa0339480 | 0.806483 | 8.046333e-50 | -8.615850e-47 |
| Msa0300690 | Msa0339480 | 0.806328 | 8.676012e-50 | -8.615850e-47 |
| Msa0309770 | Msa0339480 | 0.827030 | 1.959531e-54 | -8.615850e-47 |
| Msa0317510 | Msa0339480 | 0.802171 | 6.366814e-49 | -8.615850e-47 |
| Msa0333030 | Msa0339480 | 0.804208 | 2.412573e-49 | -8.615850e-47 |
| Msa0337620 | Msa0339480 | 0.835456 | 1.660443e-56 | -8.615850e-47 |
| Msa0339480 | Msa0340380 | 0.802465 | 5.538930e-49 | -8.615850e-47 |
| Msa0339480 | Msa0345970 | 0.816304 | 5.924662e-52 | -8.615850e-47 |
| Msa0339480 | Msa0357990 | 0.804272 | 2.339696e-49 | -8.615850e-47 |
| Msa0339480 | Msa0363200 | 0.803990 | 2.677328e-49 | -8.615850e-47 |
| Msa0339480 | Msa0385580 | 0.812283 | 4.584006e-51 | -8.615850e-47 |
| Msa0339480 | Msa0393080 | 0.801888 | 7.279876e-49 | -8.615850e-47 |
| Msa0339480 | Msa0428080 | 0.801618 | 8.269679e-49 | -8.615850e-47 |
| Msa0339480 | Msa0440750 | 0.823146 | 1.620389e-53 | -8.615850e-47 |
| Msa0339480 | Msa0446950 | 0.808247 | 3.401715e-50 | -8.615850e-47 |
| Msa0339480 | Msa0464680 | 0.827815 | 1.270111e-54 | -8.615850e-47 |
| Msa0339480 | Msa0467490 | 0.838945 | 2.126533e-57 | -8.615850e-47 |
| Msa0339480 | Msa0498060 | 0.811440 | 6.994843e-51 | -8.615850e-47 |
| Msa0339480 | Msa0510350 | 0.806305 | 8.775500e-50 | -8.615850e-47 |
| Msa0339480 | Msa0511370 | 0.827129 | 1.855482e-54 | -8.615850e-47 |
| Msa0339480 | Msa0529890 | 0.805353 | 1.390737e-49 | -8.615850e-47 |
| Msa0339480 | Msa0546680 | 0.800680 | 1.286611e-48 | -8.615850e-47 |
| Msa0339480 | Msa0565960 | 0.815554 | 8.712277e-52 | -8.615850e-47 |
| Msa0339480 | Msa0569200 | 0.821010 | 5.066728e-53 | -8.615850e-47 |
| Msa0339480 | Msa0585560 | 0.801294 | 9.635281e-49 | -8.615850e-47 |
| Msa0339480 | Msa0593650 | 0.811386 | 7.183869e-51 | -8.615850e-47 |
| Msa0339480 | Msa0602390 | 0.849202 | 3.762616e-60 | -8.615850e-47 |
| Msa0339480 | Msa0610430 | 0.800974 | 1.120265e-48 | -8.615850e-47 |
| Msa0339480 | Msa0615440 | 0.830587 | 2.700587e-55 | -8.615850e-47 |
| Msa0339480 | Msa0615710 | 0.800833 | 1.197237e-48 | -8.615850e-47 |
| Msa0339480 | Msa0621490 | 0.812804 | 3.526150e-51 | -8.615850e-47 |
| Msa0339480 | Msa0623790 | 0.800753 | 1.242954e-48 | -8.615850e-47 |
| Msa0339480 | Msa0625720 | 0.806201 | 9.226659e-50 | -8.615850e-47 |
| Msa0339480 | Msa0641670 | 0.817890 | 2.607933e-52 | -8.615850e-47 |
| Msa0339480 | Msa0643560 | 0.823615 | 1.258842e-53 | -8.615850e-47 |
| Msa0339480 | Msa0650020 | 0.808561 | 2.915913e-50 | -8.615850e-47 |
| Msa0339480 | Msa0661650 | 0.805371 | 1.378550e-49 | -8.615850e-47 |
| Msa0339480 | Msa0663390 | 0.803517 | 3.357738e-49 | -8.615850e-47 |
| Msa0339480 | Msa0663810 | 0.828956 | 6.736229e-55 | -8.615850e-47 |
| Msa0339480 | Msa0692950 | 0.808416 | 3.130928e-50 | -8.615850e-47 |
| Msa0339480 | Msa0698490 | 0.833448 | 5.302117e-56 | -8.615850e-47 |
| Msa0339480 | Msa0698660 | 0.835024 | 2.134837e-56 | -8.615850e-47 |
| Msa0339480 | Msa0698920 | 0.814065 | 1.862699e-51 | -8.615850e-47 |
| Msa0339480 | Msa0707250 | 0.800662 | 1.297130e-48 | -8.615850e-47 |
| Msa0339480 | Msa0722810 | 0.809573 | 1.770027e-50 | -8.615850e-47 |
| Msa0339480 | Msa0722960 | 0.816052 | 6.746966e-52 | -8.615850e-47 |
| Msa0339480 | Msa0730430 | 0.809784 | 1.594734e-50 | -8.615850e-47 |
| Msa0339480 | Msa0763830 | 0.824347 | 8.480104e-54 | -8.615850e-47 |
| Msa0339480 | Msa0770720 | 0.823206 | 1.568811e-53 | -8.615850e-47 |
| Msa0339480 | Msa0808270 | 0.817548 | 3.114822e-52 | -8.615850e-47 |
| Msa0339480 | Msa0813740 | 0.822402 | 2.414552e-53 | -8.615850e-47 |
| Msa0339480 | Msa0824660 | 0.802253 | 6.123827e-49 | -8.615850e-47 |
| Msa0339480 | Msa0828560 | 0.822537 | 2.246439e-53 | -8.615850e-47 |
| Msa0339480 | Msa0871270 | 0.816612 | 5.056355e-52 | -8.615850e-47 |
| Msa0339480 | Msa0876190 | 0.830089 | 3.574110e-55 | -8.615850e-47 |
| Msa0339480 | Msa0876200 | 0.800391 | 1.473205e-48 | -8.615850e-47 |
| Msa0339480 | Msa0878500 | 0.846540 | 2.037109e-59 | -8.615850e-47 |
| Msa0339480 | Msa0892120 | 0.815010 | 1.150535e-51 | -8.615850e-47 |
| Msa0339480 | Msa0920610 | 0.814802 | 1.279587e-51 | -8.615850e-47 |
| Msa0339480 | Msa0938220 | 0.829782 | 4.245599e-55 | -8.615850e-47 |
| Msa0339480 | Msa0944190 | 0.847734 | 9.585608e-60 | -8.615850e-47 |
| Msa0339480 | Msa0945970 | 0.808129 | 3.603634e-50 | -8.615850e-47 |
| Msa0339480 | Msa0981060 | 0.810069 | 1.384435e-50 | -8.615850e-47 |
| Msa0339480 | Msa0994950 | 0.806963 | 6.372480e-50 | -8.615850e-47 |
| Msa0339480 | Msa0999970 | 0.820297 | 7.389364e-53 | -8.615850e-47 |
| Msa0339480 | Msa1014540 | 0.821010 | 5.066642e-53 | -8.615850e-47 |
| Msa0339480 | Msa1019640 | 0.801385 | 9.232541e-49 | -8.615850e-47 |
| Msa0339480 | Msa1029250 | 0.805986 | 1.023993e-49 | -8.615850e-47 |
| Msa0339480 | Msa1037420 | 0.818074 | 2.369717e-52 | -8.615850e-47 |
| Msa0339480 | Msa1051200 | 0.803016 | 4.262308e-49 | -8.615850e-47 |
| Msa0339480 | Msa1075540 | 0.811682 | 6.196823e-51 | -8.615850e-47 |
| Msa0339480 | Msa1075650 | 0.802832 | 4.652391e-49 | -8.615850e-47 |
| Msa0339480 | Msa1084960 | 0.801880 | 7.305975e-49 | -8.615850e-47 |
| Msa0339480 | Msa1087710 | 0.809329 | 1.996881e-50 | -8.615850e-47 |
| Msa0339480 | Msa1088640 | 0.802963 | 4.372047e-49 | -8.615850e-47 |
| Msa0339480 | Msa1104090 | 0.802561 | 5.291044e-49 | -8.615850e-47 |
| Msa0339480 | Msa1104370 | 0.817575 | 3.070736e-52 | -8.615850e-47 |
| Msa0339480 | Msa1106700 | 0.823759 | 1.165263e-53 | -8.615850e-47 |
| Msa0339480 | Msa1162270 | 0.815453 | 9.173097e-52 | -8.615850e-47 |
| Msa0339480 | Msa1171710 | 0.815232 | 1.027533e-51 | -8.615850e-47 |
| Msa0339480 | Msa1181850 | 0.801404 | 9.149736e-49 | -8.615850e-47 |
| Msa0339480 | Msa1181860 | 0.803731 | 3.031038e-49 | -8.615850e-47 |
| Msa0339480 | Msa1206670 | 0.808040 | 3.764256e-50 | -8.615850e-47 |
| Msa0339480 | Msa1209460 | 0.834867 | 2.337821e-56 | -8.615850e-47 |
| Msa0339480 | Msa1225700 | 0.819535 | 1.103815e-52 | -8.615850e-47 |
| Msa0339480 | Msa1242670 | 0.828140 | 1.060614e-54 | -8.615850e-47 |
| Msa0339480 | Msa1271990 | 0.804948 | 1.690802e-49 | -8.615850e-47 |
| Msa0339480 | Msa1283840 | 0.803239 | 3.832531e-49 | -8.615850e-47 |
| Msa0339480 | Msa1284550 | 0.805898 | 1.068550e-49 | -8.615850e-47 |
| Msa0339480 | Msa1287460 | 0.805944 | 1.045280e-49 | -8.615850e-47 |
| Msa0339480 | Msa1297160 | 0.816916 | 4.321489e-52 | -8.615850e-47 |
| Msa0339480 | Msa1297230 | 0.801939 | 7.106606e-49 | -8.615850e-47 |
| Msa0339480 | Msa1298820 | 0.807673 | 4.506976e-50 | -8.615850e-47 |
| Msa0339480 | Msa1306860 | 0.808600 | 2.860276e-50 | -8.615850e-47 |
| Msa0339480 | Msa1330410 | 0.828541 | 8.488366e-55 | -8.615850e-47 |
| Msa0339480 | Msa1340470 | 0.811688 | 6.176693e-51 | -8.615850e-47 |
| Msa0339480 | Msa1348490 | 0.801249 | 9.841191e-49 | -8.615850e-47 |
| Msa0339480 | Msa1353330 | 0.809782 | 1.596030e-50 | -8.615850e-47 |
| Msa0339480 | Msa1374120 | 0.825869 | 3.705125e-54 | -8.615850e-47 |
| Msa0339480 | Msa1382620 | 0.812799 | 3.535126e-51 | -8.615850e-47 |
| Msa0339480 | Msa1385770 | 0.803130 | 4.038215e-49 | -8.615850e-47 |
| Msa0339480 | Msa1387870 | 0.818649 | 1.755938e-52 | -8.615850e-47 |
| Msa0339480 | Msa1409240 | 0.801718 | 7.889701e-49 | -8.615850e-47 |
| Msa0339480 | Msa1416150 | 0.805041 | 1.616831e-49 | -8.615850e-47 |
| Msa0339480 | Msa1417420 | 0.803210 | 3.885947e-49 | -8.615850e-47 |
| Msa0339480 | Msa1419370 | 0.834731 | 2.529338e-56 | -8.615850e-47 |
| Msa0339480 | Msa1423350 | 0.808451 | 3.077106e-50 | -8.615850e-47 |
| Msa0339480 | Msa1426030 | 0.801388 | 9.220722e-49 | -8.615850e-47 |
| Msa0339480 | Msa1434140 | 0.807645 | 4.569107e-50 | -8.615850e-47 |
| Msa0339480 | Msa1446830 | 0.841911 | 3.564865e-58 | -8.615850e-47 |
| Msa0339480 | Msa1464810 | 0.826251 | 3.006176e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339480 | MtrunA17_Chr2g0327921 | 91.379 | 58 | 5 | 0 | 3 | 60 | 14 | 71 | 5.80e-34 | 110 |
| Msa0339480 | MtrunA17_Chr7g0266751 | 50.000 | 64 | 27 | 1 | 2 | 60 | 38 | 101 | 2.57e-14 | 62.4 |
| Msa0339480 | MtrunA17_Chr7g0263001 | 50.847 | 59 | 29 | 0 | 2 | 60 | 41 | 99 | 3.26e-13 | 59.7 |
| Msa0339480 | MtrunA17_Chr3g0088511 | 40.678 | 59 | 35 | 0 | 2 | 60 | 38 | 96 | 2.97e-12 | 57.0 |
| Msa0339480 | MtrunA17_Chr1g0198431 | 44.068 | 59 | 33 | 0 | 2 | 60 | 198 | 256 | 7.88e-12 | 57.8 |
| Msa0339480 | MtrunA17_Chr6g0481071 | 40.678 | 59 | 35 | 0 | 2 | 60 | 101 | 159 | 1.39e-11 | 56.2 |
| Msa0339480 | MtrunA17_Chr3g0086861 | 43.333 | 60 | 34 | 0 | 2 | 61 | 50 | 109 | 4.17e-11 | 55.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339480 | AT3G46020.1 | 60.345 | 58 | 23 | 0 | 3 | 60 | 14 | 71 | 3.13e-19 | 74.3 |
| Msa0339480 | AT5G59860.1 | 61.017 | 59 | 18 | 1 | 2 | 60 | 77 | 130 | 1.03e-17 | 72.0 |
| Msa0339480 | AT5G06210.1 | 48.333 | 60 | 31 | 0 | 2 | 61 | 40 | 99 | 6.22e-13 | 59.3 |
| Msa0339480 | AT2G37510.1 | 45.763 | 59 | 32 | 0 | 2 | 60 | 40 | 98 | 4.73e-12 | 57.0 |
| Msa0339480 | AT3G23830.2 | 43.333 | 60 | 34 | 0 | 2 | 61 | 41 | 100 | 6.02e-12 | 56.6 |
| Msa0339480 | AT3G23830.1 | 43.333 | 60 | 34 | 0 | 2 | 61 | 41 | 100 | 6.02e-12 | 56.6 |
| Msa0339480 | AT1G60650.2 | 43.333 | 60 | 34 | 0 | 2 | 61 | 18 | 77 | 1.64e-11 | 57.4 |
| Msa0339480 | AT1G60650.1 | 43.333 | 60 | 34 | 0 | 2 | 61 | 18 | 77 | 1.64e-11 | 57.4 |
| Msa0339480 | AT3G20930.1 | 42.373 | 59 | 34 | 0 | 2 | 60 | 288 | 346 | 2.80e-11 | 57.0 |
| Msa0339480 | AT1G73530.1 | 42.373 | 59 | 34 | 0 | 2 | 60 | 83 | 141 | 6.94e-11 | 54.7 |
Find 13 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGAAATTTCAGGAAAATT+AGG | 0.173467 | 2_4:+60620429 | Msa0339480:intron |
| ACTCGAAGGCCTAAAGGTTT+TGG | 0.275643 | 2_4:+60618220 | Msa0339480:CDS |
| GTGAAATTTCAGGAAAATTA+GGG | 0.311645 | 2_4:+60620430 | Msa0339480:intron |
| GTGACAAAACCAAAACCTTT+AGG | 0.425328 | 2_4:-60618229 | None:intergenic |
| ATCTGAAATTGAAGCTGAAA+AGG | 0.434986 | 2_4:+60618258 | Msa0339480:CDS |
| GAGTCATTGTTCTCACCATT+CGG | 0.439129 | 2_4:+60618072 | Msa0339480:CDS |
| CTAGGAAAGCGTTGAATGGA+AGG | 0.544048 | 2_4:+60618281 | Msa0339480:CDS |
| AAGGCTAGGAAAGCGTTGAA+TGG | 0.548859 | 2_4:+60618277 | Msa0339480:CDS |
| AAATTGAAGCTGAAAAGGCT+AGG | 0.589928 | 2_4:+60618263 | Msa0339480:CDS |
| TAGGAAAGCGTTGAATGGAA+GGG | 0.662886 | 2_4:+60618282 | Msa0339480:CDS |
| CCTTCGGTAAGTACTCCGAA+TGG | 0.672529 | 2_4:-60618087 | None:intergenic |
| CCATTCGGAGTACTTACCGA+AGG | 0.685995 | 2_4:+60618087 | Msa0339480:CDS |
| TGACTCTAATTGTTGCTGTG+TGG | 0.709029 | 2_4:-60618055 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAAATAAATAAATCGAAAT+AGG | - | chr2_4:60618386-60618405 | None:intergenic | 15.0% |
| !!! | TTTATATTTTGTTATAGGAA+TGG | + | chr2_4:60618592-60618611 | Msa0339480:intron | 15.0% |
| !! | TATTCTTCAATAATCTAATT+TGG | + | chr2_4:60620077-60620096 | Msa0339480:intron | 15.0% |
| !! | ATTCTTCAATAATCTAATTT+GGG | + | chr2_4:60620078-60620097 | Msa0339480:intron | 15.0% |
| !! | TTATAACTTATAAGCACTTA+GGG | + | chr2_4:60618655-60618674 | Msa0339480:intron | 20.0% |
| !!! | TTTTTGAATACTGAAATCAA+TGG | + | chr2_4:60619135-60619154 | Msa0339480:intron | 20.0% |
| !! | CCAAGATTAATTAATTGATT+GGG | - | chr2_4:60619574-60619593 | None:intergenic | 20.0% |
| !! | TCCAAGATTAATTAATTGAT+TGG | - | chr2_4:60619575-60619594 | None:intergenic | 20.0% |
| !!! | AAGTCTAAGATTCTTTTTAT+TGG | - | chr2_4:60619607-60619626 | None:intergenic | 20.0% |
| !! | CTATAAAAGTGAAGAAAAAA+AGG | - | chr2_4:60620201-60620220 | None:intergenic | 20.0% |
| !!! | CTTTTTATAAGTGAAATTTC+AGG | + | chr2_4:60620420-60620439 | Msa0339480:intron | 20.0% |
| ! | AAACAATGTTGAAAAGGTTT+GGG | - | chr2_4:60618000-60618019 | None:intergenic | 25.0% |
| ! | GAAATGAAACAATGTTGAAA+AGG | - | chr2_4:60618006-60618025 | None:intergenic | 25.0% |
| !! | TTCATTTCATTTCATTTTCC+AGG | + | chr2_4:60618018-60618037 | Msa0339480:intron | 25.0% |
| !!! | CATTTTAACAAACACATTCA+TGG | - | chr2_4:60618340-60618359 | None:intergenic | 25.0% |
| ! | ATTTATTTGAGCTTATCTAC+TGG | + | chr2_4:60618396-60618415 | Msa0339480:intron | 25.0% |
| ! | AACAAGCTGAAAATAACTTA+TGG | - | chr2_4:60618477-60618496 | None:intergenic | 25.0% |
| !!! | GTTTGACTTTTGTTTTGTAA+CGG | + | chr2_4:60618551-60618570 | Msa0339480:intron | 25.0% |
| ! | GTTATAACTTATAAGCACTT+AGG | + | chr2_4:60618654-60618673 | Msa0339480:intron | 25.0% |
| !!! | GTTATTTTCATAAGCTATCT+TGG | - | chr2_4:60618806-60618825 | None:intergenic | 25.0% |
| ! | ATAAGCTGTTTATCCAATTA+TGG | + | chr2_4:60618929-60618948 | Msa0339480:intron | 25.0% |
| !! | TAAAGCATTAAAGCCATAAT+TGG | - | chr2_4:60618945-60618964 | None:intergenic | 25.0% |
| !!! | AGTTTAGCTTTCCTTTTTTT+TGG | + | chr2_4:60618976-60618995 | Msa0339480:intron | 25.0% |
| ! | AGATTACAGAACCAAAAAAA+AGG | - | chr2_4:60618990-60619009 | None:intergenic | 25.0% |
| ! | GATTATTAGTGTGTTATCAA+AGG | + | chr2_4:60619056-60619075 | Msa0339480:intron | 25.0% |
| ! | TATATATATAAAGCTTGTCC+AGG | + | chr2_4:60619331-60619350 | Msa0339480:intron | 25.0% |
| ! | TACTTATTAACTATGAAGCA+CGG | + | chr2_4:60619360-60619379 | Msa0339480:intron | 25.0% |
| !!! | TTTCAAATTATTTGCTGTGT+CGG | - | chr2_4:60619403-60619422 | None:intergenic | 25.0% |
| ! | TTCAATGTAATTACAAGTGT+TGG | + | chr2_4:60619435-60619454 | Msa0339480:intron | 25.0% |
| ! | CCCAATCAATTAATTAATCT+TGG | + | chr2_4:60619571-60619590 | Msa0339480:intron | 25.0% |
| ! | AGAACAACATATAGATGATA+TGG | - | chr2_4:60619838-60619857 | None:intergenic | 25.0% |
| ! | GATAAAAATCATGTATCCTT+CGG | - | chr2_4:60619955-60619974 | None:intergenic | 25.0% |
| !! | ACAAATATGAGTATCCATTT+TGG | + | chr2_4:60620111-60620130 | Msa0339480:intron | 25.0% |
| ! | TTGCATCATAATTTCCAAAA+TGG | - | chr2_4:60620128-60620147 | None:intergenic | 25.0% |
| ! | TTGCAAAAATTGATTGTAGT+TGG | + | chr2_4:60620153-60620172 | Msa0339480:intron | 25.0% |
| ! | AAAATTGATTGTAGTTGGTT+TGG | + | chr2_4:60620158-60620177 | Msa0339480:intron | 25.0% |
| !!! | TTCACTTTTATAGTACAAGA+TGG | + | chr2_4:60620208-60620227 | Msa0339480:intron | 25.0% |
| GAAACAATGTTGAAAAGGTT+TGG | - | chr2_4:60618001-60618020 | None:intergenic | 30.0% | |
| TTATCGATCAAAAAACTCGA+AGG | + | chr2_4:60618206-60618225 | Msa0339480:CDS | 30.0% | |
| ! | ATCTGAAATTGAAGCTGAAA+AGG | + | chr2_4:60618258-60618277 | Msa0339480:CDS | 30.0% |
| TTCTAAATCACTAATCAGTC+AGG | - | chr2_4:60618363-60618382 | None:intergenic | 30.0% | |
| TAGCTTATGAAGGTAGTTTA+CGG | + | chr2_4:60618446-60618465 | Msa0339480:intron | 30.0% | |
| ! | AGATGTTTTCATAAGCTAAC+AGG | - | chr2_4:60618512-60618531 | None:intergenic | 30.0% |
| ATAAGCGTTTATCATGTAAG+TGG | - | chr2_4:60618634-60618653 | None:intergenic | 30.0% | |
| !!! | GTTCATTTTAGCTTAACTAC+TGG | + | chr2_4:60618691-60618710 | Msa0339480:intron | 30.0% |
| ! | GAGCATATAACACTTTTCAT+AGG | + | chr2_4:60618752-60618771 | Msa0339480:intron | 30.0% |
| !! | CTTACATAAGCTATTTCTAC+AGG | - | chr2_4:60618871-60618890 | None:intergenic | 30.0% |
| !! | ATGGCTTTAATGCTTTACTT+CGG | + | chr2_4:60618948-60618967 | Msa0339480:intron | 30.0% |
| TGGAACAACTATGTAACTTA+AGG | - | chr2_4:60619190-60619209 | None:intergenic | 30.0% | |
| AGTTAATAAGTAGCTAATCC+TGG | - | chr2_4:60619352-60619371 | None:intergenic | 30.0% | |
| TGTTAATAAGCTATGAAGCA+CGG | - | chr2_4:60619513-60619532 | None:intergenic | 30.0% | |
| TAGTTAGTTACAACTCTCTT+AGG | - | chr2_4:60619550-60619569 | None:intergenic | 30.0% | |
| CTCTATCCAACAACTTATAT+TGG | - | chr2_4:60619699-60619718 | None:intergenic | 30.0% | |
| CAATATAAGTTGTTGGATAG+AGG | + | chr2_4:60619697-60619716 | Msa0339480:intron | 30.0% | |
| CAAGTACAATTGAGATAGTA+AGG | - | chr2_4:60619729-60619748 | None:intergenic | 30.0% | |
| CTTACTATCTCAATTGTACT+TGG | + | chr2_4:60619727-60619746 | Msa0339480:intron | 30.0% | |
| AAATACACAAGATTTGAGCA+TGG | - | chr2_4:60619977-60619996 | None:intergenic | 30.0% | |
| !! | TGACATCTGAATAAGTTGAT+CGG | - | chr2_4:60620000-60620019 | None:intergenic | 30.0% |
| TTGTGAACTCACAAGTTAAT+TGG | + | chr2_4:60620236-60620255 | Msa0339480:intron | 30.0% | |
| ! | AGTTTGTTTGTGATCAAACT+TGG | + | chr2_4:60620297-60620316 | Msa0339480:intron | 30.0% |
| GTTTGTTTGTGATCAAACTT+GGG | + | chr2_4:60620298-60620317 | Msa0339480:intron | 30.0% | |
| TCAAAAATAGACTTGAGTGT+TGG | - | chr2_4:60620344-60620363 | None:intergenic | 30.0% | |
| !!! | AAGTCTATTTTTGAGTGTTG+CGG | + | chr2_4:60620350-60620369 | Msa0339480:intron | 30.0% |
| GTTTGTCTACTTTCAGATTG+AGG | - | chr2_4:60617880-60617899 | None:intergenic | 35.0% | |
| GTGACAAAACCAAAACCTTT+AGG | - | chr2_4:60618232-60618251 | None:intergenic | 35.0% | |
| AAATTGAAGCTGAAAAGGCT+AGG | + | chr2_4:60618263-60618282 | Msa0339480:CDS | 35.0% | |
| CTTATCATGATAAGCACATG+TGG | - | chr2_4:60618905-60618924 | None:intergenic | 35.0% | |
| TGTGTTATCAAAGGAAGTTG+TGG | + | chr2_4:60619065-60619084 | Msa0339480:intron | 35.0% | |
| GTGTTATCAAAGGAAGTTGT+GGG | + | chr2_4:60619066-60619085 | Msa0339480:intron | 35.0% | |
| TGTTATCAAAGGAAGTTGTG+GGG | + | chr2_4:60619067-60619086 | Msa0339480:intron | 35.0% | |
| TTTCACTTCTGCTACAATGA+TGG | + | chr2_4:60619097-60619116 | Msa0339480:intron | 35.0% | |
| TTCACTTCTGCTACAATGAT+GGG | + | chr2_4:60619098-60619117 | Msa0339480:intron | 35.0% | |
| ATCCATGGATTCTCAACAAT+TGG | - | chr2_4:60619213-60619232 | None:intergenic | 35.0% | |
| ACAGAGCATATTGATACTCA+TGG | + | chr2_4:60619265-60619284 | Msa0339480:intron | 35.0% | |
| TTAACTATGAAGCACGGATA+CGG | + | chr2_4:60619366-60619385 | Msa0339480:intron | 35.0% | |
| !! | GTAATTACAAGTGTTGGTGT+CGG | + | chr2_4:60619441-60619460 | Msa0339480:intron | 35.0% |
| !! | TAATTACAAGTGTTGGTGTC+GGG | + | chr2_4:60619442-60619461 | Msa0339480:intron | 35.0% |
| ! | AGACATAGAGCATCAATAGT+TGG | + | chr2_4:60619627-60619646 | Msa0339480:intron | 35.0% |
| ! | AGAGCATCAATAGTTGGATT+TGG | + | chr2_4:60619633-60619652 | Msa0339480:intron | 35.0% |
| GAGCATCAATAGTTGGATTT+GGG | + | chr2_4:60619634-60619653 | Msa0339480:intron | 35.0% | |
| AGTCAGCCAATATAAGTTGT+TGG | + | chr2_4:60619690-60619709 | Msa0339480:intron | 35.0% | |
| TCTCAATTGTACTTGGTCAA+CGG | + | chr2_4:60619734-60619753 | Msa0339480:intron | 35.0% | |
| !! | CTAGCTTTGTCAAAGGAAAA+TGG | - | chr2_4:60619796-60619815 | None:intergenic | 35.0% |
| ! | CATTTTCCTTTGACAAAGCT+AGG | + | chr2_4:60619794-60619813 | Msa0339480:intron | 35.0% |
| !! | ATTGTAGTTGGTTTGGAAGT+TGG | + | chr2_4:60620165-60620184 | Msa0339480:intron | 35.0% |
| ACAAACAAACTCTGATAGCT+TGG | - | chr2_4:60620288-60620307 | None:intergenic | 35.0% | |
| TTAGGTGGTTGAACTTGTCA+TGG | + | chr2_4:60617821-60617840 | Msa0339480:intron | 40.0% | |
| TTGATTGTTTGCACGAAGGT+AGG | - | chr2_4:60617851-60617870 | None:intergenic | 40.0% | |
| ACCTTCGTGCAAACAATCAA+AGG | + | chr2_4:60617851-60617870 | Msa0339480:intron | 40.0% | |
| TCCTTTGATTGTTTGCACGA+AGG | - | chr2_4:60617855-60617874 | None:intergenic | 40.0% | |
| ACAAACATGTCTCAGCGAAT+CGG | + | chr2_4:60617894-60617913 | Msa0339480:intron | 40.0% | |
| GTACTCGACGAAAATGAATG+AGG | - | chr2_4:60617970-60617989 | None:intergenic | 40.0% | |
| GTGGTGTAAAACGATAATCC+TGG | - | chr2_4:60618039-60618058 | None:intergenic | 40.0% | |
| TGACTCTAATTGTTGCTGTG+TGG | - | chr2_4:60618058-60618077 | None:intergenic | 40.0% | |
| GAGTCATTGTTCTCACCATT+CGG | + | chr2_4:60618072-60618091 | Msa0339480:CDS | 40.0% | |
| CAAAAAACTCGAAGGCCTAA+AGG | + | chr2_4:60618214-60618233 | Msa0339480:CDS | 40.0% | |
| !! | TAGGAAAGCGTTGAATGGAA+GGG | + | chr2_4:60618282-60618301 | Msa0339480:CDS | 40.0% |
| TCTACTGGCATAAGCATTTG+TGG | + | chr2_4:60618411-60618430 | Msa0339480:intron | 40.0% | |
| AAGCATTTGTGGAACTGTTC+CGG | + | chr2_4:60618422-60618441 | Msa0339480:intron | 40.0% | |
| AACTACCTTCATAAGCTAGC+CGG | - | chr2_4:60618444-60618463 | None:intergenic | 40.0% | |
| ! | ATAAGCACTTAGGGCTTGTT+TGG | + | chr2_4:60618664-60618683 | Msa0339480:intron | 40.0% |
| GTGAACAAGCATTCTGTTGT+TGG | + | chr2_4:60619020-60619039 | Msa0339480:intron | 40.0% | |
| AGCATTCTGTTGTTGGTCAA+TGG | + | chr2_4:60619027-60619046 | Msa0339480:intron | 40.0% | |
| TCACTTCTGCTACAATGATG+GGG | + | chr2_4:60619099-60619118 | Msa0339480:intron | 40.0% | |
| ! | AATGATGGGGTAGACTTGAT+GGG | + | chr2_4:60619112-60619131 | Msa0339480:intron | 40.0% |
| CATGGATTCTCAACAATTGG+TGG | - | chr2_4:60619210-60619229 | None:intergenic | 40.0% | |
| CACCAATTGTTGAGAATCCA+TGG | + | chr2_4:60619208-60619227 | Msa0339480:intron | 40.0% | |
| TGTTGAGAATCCATGGATCA+AGG | + | chr2_4:60619215-60619234 | Msa0339480:intron | 40.0% | |
| GTTGAGAATCCATGGATCAA+GGG | + | chr2_4:60619216-60619235 | Msa0339480:intron | 40.0% | |
| GTTACAACTCTCTTAGGAGT+TGG | - | chr2_4:60619544-60619563 | None:intergenic | 40.0% | |
| ! | CTTATATTGGCTGACTGCAA+TGG | - | chr2_4:60619686-60619705 | None:intergenic | 40.0% |
| !! | CAGATTCCTAGCTTTGTCAA+AGG | - | chr2_4:60619803-60619822 | None:intergenic | 40.0% |
| ATCAACTATCTGCACCATGT+GGG | - | chr2_4:60619902-60619921 | None:intergenic | 40.0% | |
| CAAACATGTCTCAGCGAATC+GGG | + | chr2_4:60617895-60617914 | Msa0339480:intron | 45.0% | |
| CACATACACACACACACCTT+CGG | - | chr2_4:60618106-60618125 | None:intergenic | 45.0% | |
| GGTGAGAAGAGAAAGAAGAG+AGG | - | chr2_4:60618138-60618157 | None:intergenic | 45.0% | |
| ATCAGAACCGACATAGCAGT+GGG | - | chr2_4:60618162-60618181 | None:intergenic | 45.0% | |
| AATCAGAACCGACATAGCAG+TGG | - | chr2_4:60618163-60618182 | None:intergenic | 45.0% | |
| ! | ACTCGAAGGCCTAAAGGTTT+TGG | + | chr2_4:60618220-60618239 | Msa0339480:CDS | 45.0% |
| !! | AAGGCTAGGAAAGCGTTGAA+TGG | + | chr2_4:60618277-60618296 | Msa0339480:CDS | 45.0% |
| !! | CTAGGAAAGCGTTGAATGGA+AGG | + | chr2_4:60618281-60618300 | Msa0339480:CDS | 45.0% |
| ! | CACTTAGGGCTTGTTTGGAT+TGG | + | chr2_4:60618669-60618688 | Msa0339480:intron | 45.0% |
| ! | CAATGATGGGGTAGACTTGA+TGG | + | chr2_4:60619111-60619130 | Msa0339480:intron | 45.0% |
| GATCAAGGGAGGAAGATCAT+AGG | + | chr2_4:60619230-60619249 | Msa0339480:intron | 45.0% | |
| ! | CTCTCTTAGGAGTTGGTTAG+CGG | - | chr2_4:60619537-60619556 | None:intergenic | 45.0% |
| GGGGGATATTACTGTACTGA+AGG | - | chr2_4:60619881-60619900 | None:intergenic | 45.0% | |
| TACAGTAATATCCCCCCACA+TGG | + | chr2_4:60619885-60619904 | Msa0339480:intron | 45.0% | |
| TCAACTATCTGCACCATGTG+GGG | - | chr2_4:60619901-60619920 | None:intergenic | 45.0% | |
| CATCAACTATCTGCACCATG+TGG | - | chr2_4:60619903-60619922 | None:intergenic | 45.0% | |
| CACATGGTGCAGATAGTTGA+TGG | + | chr2_4:60619901-60619920 | Msa0339480:intron | 45.0% | |
| !! | TGGTGCAGATAGTTGATGGA+AGG | + | chr2_4:60619905-60619924 | Msa0339480:intron | 45.0% |
| CGTTGAACATGCAAAACCGA+AGG | + | chr2_4:60619936-60619955 | Msa0339480:intron | 45.0% | |
| !!! | TTTTTGAGTGTTGCGGTGAG+AGG | + | chr2_4:60620357-60620376 | Msa0339480:intron | 45.0% |
| !!! | TTTATTTTATATTTTGTTAT+AGG | + | chr2_4:60618587-60618606 | Msa0339480:intron | 5.0% |
| CCTTCGGTAAGTACTCCGAA+TGG | - | chr2_4:60618090-60618109 | None:intergenic | 50.0% | |
| ! | CCATTCGGAGTACTTACCGA+AGG | + | chr2_4:60618087-60618106 | Msa0339480:CDS | 50.0% |
| TCAGAACCGACATAGCAGTG+GGG | - | chr2_4:60618161-60618180 | None:intergenic | 50.0% | |
| !! | CTGTTCCGGCTAGCTTATGA+AGG | + | chr2_4:60618436-60618455 | Msa0339480:intron | 50.0% |
| GAGAATCCATGGATCAAGGG+AGG | + | chr2_4:60619219-60619238 | Msa0339480:intron | 50.0% | |
| GATCTTCCTCCCTTGATCCA+TGG | - | chr2_4:60619228-60619247 | None:intergenic | 50.0% | |
| GGGAGGAAGATCATAGGCAT+AGG | + | chr2_4:60619236-60619255 | Msa0339480:intron | 50.0% | |
| GATTAGACGTGTCCCAGTGT+CGG | - | chr2_4:60619480-60619499 | None:intergenic | 50.0% | |
| TATGAAGCACGGACACTCCT+CGG | - | chr2_4:60619502-60619521 | None:intergenic | 50.0% | |
| AACTATCTGCACCATGTGGG+GGG | - | chr2_4:60619899-60619918 | None:intergenic | 50.0% | |
| CAACTATCTGCACCATGTGG+GGG | - | chr2_4:60619900-60619919 | None:intergenic | 50.0% | |
| AGAACCGACATAGCAGTGGG+GGG | - | chr2_4:60618159-60618178 | None:intergenic | 55.0% | |
| CAGAACCGACATAGCAGTGG+GGG | - | chr2_4:60618160-60618179 | None:intergenic | 55.0% | |
| ACTGGGACACGTCTAATCCG+AGG | + | chr2_4:60619482-60619501 | Msa0339480:intron | 55.0% | |
| CTCACCCCCCACTGCTATGT+CGG | + | chr2_4:60618152-60618171 | Msa0339480:intron | 60.0% | |
| CACGCCACGTGTCCGACACT+GGG | + | chr2_4:60619465-60619484 | Msa0339480:intron | 65.0% | |
| ! | GTGTCCCAGTGTCGGACACG+TGG | - | chr2_4:60619472-60619491 | None:intergenic | 65.0% |
| GCACGCCACGTGTCCGACAC+TGG | + | chr2_4:60619464-60619483 | Msa0339480:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 60617810 | 60620450 | 60617810 | ID=Msa0339480;Name=Msa0339480 |
| chr2_4 | mRNA | 60617810 | 60620450 | 60617810 | ID=Msa0339480-mRNA-1;Parent=Msa0339480;Name=Msa0339480-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|0.33|0.5|0.5|1|1|4|0|62 |
| chr2_4 | exon | 60617810 | 60617813 | 60617810 | ID=Msa0339480-mRNA-1:exon:18875;Parent=Msa0339480-mRNA-1 |
| chr2_4 | exon | 60618040 | 60618108 | 60618040 | ID=Msa0339480-mRNA-1:exon:18876;Parent=Msa0339480-mRNA-1 |
| chr2_4 | exon | 60618197 | 60618303 | 60618197 | ID=Msa0339480-mRNA-1:exon:18877;Parent=Msa0339480-mRNA-1 |
| chr2_4 | exon | 60620442 | 60620450 | 60620442 | ID=Msa0339480-mRNA-1:exon:18878;Parent=Msa0339480-mRNA-1 |
| chr2_4 | CDS | 60617810 | 60617813 | 60617810 | ID=Msa0339480-mRNA-1:cds;Parent=Msa0339480-mRNA-1 |
| chr2_4 | CDS | 60618040 | 60618108 | 60618040 | ID=Msa0339480-mRNA-1:cds;Parent=Msa0339480-mRNA-1 |
| chr2_4 | CDS | 60618197 | 60618303 | 60618197 | ID=Msa0339480-mRNA-1:cds;Parent=Msa0339480-mRNA-1 |
| chr2_4 | CDS | 60620442 | 60620450 | 60620442 | ID=Msa0339480-mRNA-1:cds;Parent=Msa0339480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
