AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0692980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0692980 MtrunA17_Chr4g0043271 93.174 293 2 1 1 275 1 293 0.0 540
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0692980 AT2G32080.2 78.889 270 38 2 24 275 27 295 2.94e-151 424
Msa0692980 AT2G32080.1 78.148 270 41 1 24 275 27 296 1.67e-150 422

Find 115 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAAAGATGAATGCTAAAT+TGG 0.149284 4_4:-61791885 Msa0692980:exon
TTGCCAGCTCAGGATGAAAT+TGG 0.220182 4_4:-61792244 Msa0692980:CDS
TTCCTTTCTCCGGCATTTCC+TGG 0.262031 4_4:-61795527 Msa0692980:CDS
TGCAGAACAATATGAGAAAA+AGG 0.280604 4_4:+61791749 None:intergenic
TGTACAAGGTTAATTTAAAT+AGG 0.283624 4_4:-61791669 Msa0692980:three_prime_UTR
GTTATTTCATTGCAGGTTGC+AGG 0.287453 4_4:-61792042 Msa0692980:intron
GTTGGTGCTGGCTTCATATC+TGG 0.289736 4_4:-61792322 Msa0692980:CDS
CCTCAGATATTCTTAGAAAA+TGG 0.311616 4_4:+61792146 None:intergenic
TAGAAGAGGCCGTTTCTTAA+AGG 0.313607 4_4:-61795175 Msa0692980:intron
TTGATCTTGGGAACAACAAT+AGG 0.316191 4_4:-61792171 Msa0692980:CDS
GGTTTCGTCAGGGATATAAA+TGG 0.322628 4_4:-61791826 Msa0692980:three_prime_UTR
AAAATAAACCAAACACTTGT+TGG 0.331676 4_4:-61791714 Msa0692980:three_prime_UTR
GGTGGTGGTGGCGGCGGTGG+TGG 0.334359 4_4:-61795711 Msa0692980:CDS
CTTGTTGGTCAGCATAATAA+TGG 0.342195 4_4:-61791699 Msa0692980:three_prime_UTR
ATGAAGGGTGGGCAGCATTC+AGG 0.344998 4_4:-61792553 Msa0692980:CDS
TAGGTAATAACAGAGGAAAA+AGG 0.347485 4_4:-61791650 Msa0692980:three_prime_UTR
CCCTCTGCCAAGGTTTCGTC+AGG 0.351743 4_4:-61791837 Msa0692980:three_prime_UTR
TCAATCATTCTTCCATTGTC+GGG 0.356300 4_4:-61792006 Msa0692980:CDS
GCATAGATGGAGGGAAGCTC+CGG 0.364142 4_4:-61795735 None:intergenic
TCAAAGATGAATGCTAAATT+GGG 0.365376 4_4:-61791884 Msa0692980:exon
TTGTTCCTGCAGGAAGTTCC+AGG 0.375829 4_4:-61792577 Msa0692980:CDS
TTGTACTTGATTGGATAGTT+TGG 0.379961 4_4:-61791617 Msa0692980:three_prime_UTR
CTCAATCATTCTTCCATTGT+CGG 0.380080 4_4:-61792007 Msa0692980:CDS
ACCAGAGACTTGTACTTGAT+TGG 0.383457 4_4:-61791626 Msa0692980:three_prime_UTR
TGATCTTGGGAACAACAATA+GGG 0.389790 4_4:-61792170 Msa0692980:CDS
GGCAGCATTCAGGAACATTC+TGG 0.414246 4_4:-61792543 Msa0692980:CDS
TATGCTGACCAACAAGTGTT+TGG 0.414809 4_4:+61791706 None:intergenic
ACCATCATCGTTCCTTTCTC+CGG 0.417144 4_4:-61795537 Msa0692980:CDS
GGTAGCAGCGGTGGAGGTGG+TGG 0.419728 4_4:-61795690 Msa0692980:CDS
AAGCAGTTTCATGAGATTGT+TGG 0.420908 4_4:-61791979 Msa0692980:CDS
CATACCCTCAATTCGGTCCT+TGG 0.435320 4_4:+61791939 None:intergenic
GTCGGTTGATTTGCCAGCTC+AGG 0.437800 4_4:-61792254 Msa0692980:CDS
TGCTGCCCACCCTTCATCCC+TGG 0.445063 4_4:+61792559 None:intergenic
ATGAAACCTGATTCGGAAGA+AGG 0.447366 4_4:+61792492 None:intergenic
AGCAGCGGTGGAGGTGGTGG+TGG 0.447508 4_4:-61795687 Msa0692980:CDS
TCAGGATGAAATTGGGAACT+TGG 0.448346 4_4:-61792236 Msa0692980:CDS
CTTTCAGATGATGTTGGTGC+TGG 0.450565 4_4:-61792334 Msa0692980:CDS
AATTTAGCATTCATCTTTGA+GGG 0.451848 4_4:+61791887 None:intergenic
AGCGGTGGAGGTGGTGGTGG+TGG 0.451872 4_4:-61795684 Msa0692980:CDS
TTGATCAGCTCTGATCACTT+TGG 0.454267 4_4:+61792207 None:intergenic
TGAGATTGTTGGTCACTTTG+TGG 0.454440 4_4:-61791968 Msa0692980:CDS
CAATTTAGCATTCATCTTTG+AGG 0.455509 4_4:+61791886 None:intergenic
CATAGATGGAGGGAAGCTCC+GGG 0.458087 4_4:-61795734 None:intergenic
ACCGCCGCCACCACCACCCC+CGG 0.458721 4_4:+61795716 None:intergenic
GGTGGTAGCAGCGGTGGAGG+TGG 0.460366 4_4:-61795693 Msa0692980:CDS
TGCCAGCTCAGGATGAAATT+GGG 0.464017 4_4:-61792243 Msa0692980:CDS
CAAAAGAATGAAACCTGATT+CGG 0.468159 4_4:+61792485 None:intergenic
ATCAAGAAACCAGGAAATGC+CGG 0.469535 4_4:+61795518 None:intergenic
GGTGGTGGTAGCAGCGGTGG+AGG 0.475262 4_4:-61795696 Msa0692980:CDS
TTGTTGGTCAGCATAATAAT+GGG 0.477816 4_4:-61791698 Msa0692980:three_prime_UTR
GCAGGAAGTTCCAGGGATGA+AGG 0.480780 4_4:-61792569 Msa0692980:CDS
AACCAGGAAATGCCGGAGAA+AGG 0.481593 4_4:+61795525 None:intergenic
TCCAATCAAGTACAAGTCTC+TGG 0.482022 4_4:+61791625 None:intergenic
CAGGATGAAATTGGGAACTT+GGG 0.489960 4_4:-61792235 Msa0692980:CDS
TAGATGGAGGGAAGCTCCGG+GGG 0.490081 4_4:-61795732 Msa0692980:CDS
TTGATTGGATAGTTTGGCGA+TGG 0.501050 4_4:-61791611 Msa0692980:three_prime_UTR
TGTCTGAAGCTTCTGTCAGC+AGG 0.503389 4_4:-61792616 Msa0692980:CDS
TGATTGGATAGTTTGGCGAT+GGG 0.510975 4_4:-61791610 Msa0692980:three_prime_UTR
CGACTACTTTCAGATGATGT+TGG 0.519100 4_4:-61792340 Msa0692980:CDS
TGGTGGTGGTGGTGCTGACG+TGG 0.519716 4_4:-61795673 Msa0692980:CDS
GTTTCGTCAGGGATATAAAT+GGG 0.519846 4_4:-61791825 Msa0692980:three_prime_UTR
TTATATCCCTGACGAAACCT+TGG 0.520016 4_4:+61791830 None:intergenic
CAACTGACATACCCTCAATT+CGG 0.522913 4_4:+61791932 None:intergenic
TTCCCAATTTCATCCTGAGC+TGG 0.526038 4_4:+61792241 None:intergenic
TGACGAAACCTTGGCAGAGG+GGG 0.533594 4_4:+61791839 None:intergenic
AAGTAAGTACCTTTAAGAAA+CGG 0.537669 4_4:+61795166 None:intergenic
AATCACCAAGGACCGAATTG+AGG 0.544438 4_4:-61791944 Msa0692980:CDS
AGCACTATAATTGTTCCTGC+AGG 0.545453 4_4:-61792587 Msa0692980:CDS
ACAGCAAAATTCTGAATCCT+CGG 0.546233 4_4:-61792365 Msa0692980:intron
ATCACCAAGGACCGAATTGA+GGG 0.546646 4_4:-61791943 Msa0692980:CDS
CTTCTGAATTGAATGTGGAC+AGG 0.549374 4_4:-61792276 Msa0692980:CDS
GGCGGTGGTGGTAGCAGCGG+TGG 0.549557 4_4:-61795699 Msa0692980:CDS
TCATCCCTGGAACTTCCTGC+AGG 0.551352 4_4:+61792572 None:intergenic
AAGTTCCAGGGATGAAGGGT+GGG 0.558834 4_4:-61792564 Msa0692980:CDS
CCCTGACGAAACCTTGGCAG+AGG 0.559917 4_4:+61791836 None:intergenic
CGACAATGGAAGAATGATTG+AGG 0.563454 4_4:+61792008 None:intergenic
CACATTCAATTCAGAAGAGG+TGG 0.568175 4_4:+61792282 None:intergenic
TCTTTGTAAGACGTTACAAG+TGG 0.569662 4_4:-61795646 Msa0692980:CDS
GGCGGCGGTGGTGGTAGCAG+CGG 0.571188 4_4:-61795702 Msa0692980:CDS
CAATCATTCTTCCATTGTCG+GGG 0.572962 4_4:-61792005 Msa0692980:CDS
TTCAATTCAGAAGAGGTGGC+AGG 0.574176 4_4:+61792286 None:intergenic
CAGGAAGTTCCAGGGATGAA+GGG 0.577060 4_4:-61792568 Msa0692980:CDS
GAAGTTCCAGGGATGAAGGG+TGG 0.581907 4_4:-61792565 Msa0692980:CDS
GACATTGGAGAGAATAGAAG+AGG 0.584768 4_4:-61795189 Msa0692980:CDS
CCTGACGAAACCTTGGCAGA+GGG 0.585827 4_4:+61791837 None:intergenic
CAGGAACAATTATAGTGCTA+CGG 0.587717 4_4:+61792591 None:intergenic
GCCGGAGAAAGGAACGATGA+TGG 0.588635 4_4:+61795536 None:intergenic
TGGATATTGGCATAGATGGA+GGG 0.590053 4_4:-61795744 None:intergenic
TGTTCCTGCAGGAAGTTCCA+GGG 0.590512 4_4:-61792576 Msa0692980:CDS
TTTAGCATTCATCTTTGAGG+GGG 0.591689 4_4:+61791889 None:intergenic
AACTGCTTGAGCCCCGACAA+TGG 0.592807 4_4:+61791994 None:intergenic
AGGATGAAATTGGGAACTTG+GGG 0.593840 4_4:-61792234 Msa0692980:CDS
GGATGAAATTGGGAACTTGG+GGG 0.621343 4_4:-61792233 Msa0692980:CDS
CACCTCTTCTGAATTGAATG+TGG 0.629994 4_4:-61792281 Msa0692980:CDS
CAAAGATGAATGCTAAATTG+GGG 0.630789 4_4:-61791883 Msa0692980:exon
ATAGATGGAGGGAAGCTCCG+GGG 0.631989 4_4:-61795733 None:intergenic
GTCCACATTCAATTCAGAAG+AGG 0.634204 4_4:+61792279 None:intergenic
ATAATGGGAATATATGTACA+AGG 0.644805 4_4:-61791683 Msa0692980:three_prime_UTR
ATTTAAATAGGTAATAACAG+AGG 0.647085 4_4:-61791657 Msa0692980:three_prime_UTR
TTTGCTGCACATATTTCACA+TGG 0.647788 4_4:-61791554 Msa0692980:three_prime_UTR
GATTGGATAGTTTGGCGATG+GGG 0.649419 4_4:-61791609 Msa0692980:three_prime_UTR
ATTTAGCATTCATCTTTGAG+GGG 0.653146 4_4:+61791888 None:intergenic
GATGGTAGACCTAGTAGCAG+AGG 0.654078 4_4:+61795554 None:intergenic
TGAATTGAATGTGGACAGGT+CGG 0.657373 4_4:-61792272 Msa0692980:CDS
GATCTTGGGAACAACAATAG+GGG 0.659904 4_4:-61792169 Msa0692980:CDS
GAATGCTAAATTGGGGCTTG+TGG 0.662238 4_4:-61791876 Msa0692980:three_prime_UTR
ATTGAAGAGATCAAGAAACC+AGG 0.668036 4_4:+61795509 None:intergenic
CCTCTGCCAAGGTTTCGTCA+GGG 0.678625 4_4:-61791836 Msa0692980:three_prime_UTR
ATCTGAAAGTAGTCGCTCCG+AGG 0.679752 4_4:+61792348 None:intergenic
TCACTTTGTGGAAATCACCA+AGG 0.693256 4_4:-61791956 Msa0692980:CDS
CGGAAGAAGGAAAAGCCTCG+AGG 0.708267 4_4:+61792505 None:intergenic
CTGACGAAACCTTGGCAGAG+GGG 0.725942 4_4:+61791838 None:intergenic
ATCTTAAGGTAACGACCACG+AGG 0.728305 4_4:+61795588 None:intergenic
CAGAGATTAATGAAGCCTCG+AGG 0.735251 4_4:-61792520 Msa0692980:CDS
GATCTGAAAGAGAATCCTCG+TGG 0.761890 4_4:-61795603 Msa0692980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTATGTTATGTTTTTT+GGG + chr4_4:61793474-61793493 None:intergenic 10.0%
!!! AATTTTTATGTTATGTTTTT+TGG + chr4_4:61793475-61793494 None:intergenic 10.0%
!! ATAAAAATTACTATTTCAAA+CGG - chr4_4:61793486-61793505 Msa0692980:intron 10.0%
!!! TAATTATTGTTTTATGTTTC+AGG - chr4_4:61792042-61792061 Msa0692980:intron 15.0%
!! CAAAAAAAAATAAAAAATCC+AGG + chr4_4:61793013-61793032 None:intergenic 15.0%
!!! AGTAAAAAAAATGCTATTTT+TGG - chr4_4:61793609-61793628 Msa0692980:intron 15.0%
!! AATTCCTTAATATTCTATAT+AGG - chr4_4:61793803-61793822 Msa0692980:intron 15.0%
!! TTAATTACATAAGTATTTCA+AGG - chr4_4:61794153-61794172 Msa0692980:intron 15.0%
!! TAATTACATAAGTATTTCAA+GGG - chr4_4:61794154-61794173 Msa0692980:intron 15.0%
!! CAATTATTATGTTAATTCTG+AGG - chr4_4:61791775-61791794 Msa0692980:three_prime_UTR 20.0%
!!! AATTAGTTTAAGTGTATGTT+TGG + chr4_4:61791986-61792005 None:intergenic 20.0%
!! GTTAAAAATATTCTTCATTG+CGG + chr4_4:61792346-61792365 None:intergenic 20.0%
!! TTAATTTCTCATCATAAACA+GGG + chr4_4:61792670-61792689 None:intergenic 20.0%
!!! TTTAATTTCTCATCATAAAC+AGG + chr4_4:61792671-61792690 None:intergenic 20.0%
!!! TTTTAAACAGAGAAAATAGA+AGG + chr4_4:61793073-61793092 None:intergenic 20.0%
!!! TATTTTACGTTGAGTATTTT+AGG - chr4_4:61793093-61793112 Msa0692980:intron 20.0%
!!! ATTTTACGTTGAGTATTTTA+GGG - chr4_4:61793094-61793113 Msa0692980:intron 20.0%
!!! TCATTTTGTATTAGAAGTTT+AGG - chr4_4:61793241-61793260 Msa0692980:intron 20.0%
!!! CATTTTGTATTAGAAGTTTA+GGG - chr4_4:61793242-61793261 Msa0692980:intron 20.0%
!!! AGTATTTCAAGTGTAATTAT+AGG - chr4_4:61794298-61794317 Msa0692980:intron 20.0%
!!! ATTTTACGTATAATTGGTAA+GGG + chr4_4:61794423-61794442 None:intergenic 20.0%
!!! ATTAAAACAATTTAGGTTCA+AGG + chr4_4:61794460-61794479 None:intergenic 20.0%
!!! AAGATAACAACTTTTTATGA+GGG + chr4_4:61794502-61794521 None:intergenic 20.0%
!!! AAAAGATTTTTCTTTGATCT+TGG - chr4_4:61795081-61795100 Msa0692980:intron 20.0%
!!! AAAGATTTTTCTTTGATCTT+GGG - chr4_4:61795082-61795101 Msa0692980:intron 20.0%
!!! AATTTTTGTTATTTCATTGC+AGG - chr4_4:61795216-61795235 Msa0692980:intron 20.0%
!! TGTACAAGGTTAATTTAAAT+AGG - chr4_4:61795596-61795615 Msa0692980:CDS 20.0%
!! ATTTAAATAGGTAATAACAG+AGG - chr4_4:61795608-61795627 Msa0692980:CDS 20.0%
!!! AGGTTTTTTCAGAAATCTTA+AGG + chr4_4:61791694-61791713 None:intergenic 25.0%
!!! TAATTTTTGGAAAATCACTG+TGG - chr4_4:61791922-61791941 Msa0692980:CDS 25.0%
!!! AATTTTTGGAAAATCACTGT+GGG - chr4_4:61791923-61791942 Msa0692980:CDS 25.0%
!! AAGTAAGTACCTTTAAGAAA+CGG + chr4_4:61792102-61792121 None:intergenic 25.0%
!! GTATCAACTGATTCTATTTA+TGG - chr4_4:61792160-61792179 Msa0692980:CDS 25.0%
! AAGGAAATTGAGTTATTATG+CGG - chr4_4:61792295-61792314 Msa0692980:CDS 25.0%
!! CGAGAAATGGAAATTTTATT+TGG - chr4_4:61792399-61792418 Msa0692980:intron 25.0%
! ATAATACTACTGTAAGATCT+AGG - chr4_4:61792481-61792500 Msa0692980:intron 25.0%
! TAATTTCTCATCATAAACAG+GGG + chr4_4:61792669-61792688 None:intergenic 25.0%
! TGGAATTTCTGATTTATCTT+AGG - chr4_4:61792718-61792737 Msa0692980:intron 25.0%
!!! TTTGATGATGATATGCTTAA+AGG - chr4_4:61792773-61792792 Msa0692980:intron 25.0%
! TAATCAATTGTGTAGGTAAT+AGG + chr4_4:61792886-61792905 None:intergenic 25.0%
! TGAAGATTAATCAATTGTGT+AGG + chr4_4:61792893-61792912 None:intergenic 25.0%
! ATTATGTACTGTGCAATAAA+GGG + chr4_4:61793043-61793062 None:intergenic 25.0%
! TATTATGTACTGTGCAATAA+AGG + chr4_4:61793044-61793063 None:intergenic 25.0%
! ATTGCACAGTACATAATATA+TGG - chr4_4:61793046-61793065 Msa0692980:intron 25.0%
!!! TTTTACGTTGAGTATTTTAG+GGG - chr4_4:61793095-61793114 Msa0692980:intron 25.0%
!!! ATTTTAAGACATGCACAAAT+GGG - chr4_4:61793526-61793545 Msa0692980:intron 25.0%
! ACAAACTGTAACAAAACAAA+GGG - chr4_4:61793549-61793568 Msa0692980:intron 25.0%
!!! AAAATGCTATTTTTGGAGAA+TGG - chr4_4:61793616-61793635 Msa0692980:intron 25.0%
!! CTTTTATGTTTCAACTTTCA+AGG - chr4_4:61793645-61793664 Msa0692980:intron 25.0%
! GAACATAAGAACAATAAAAC+CGG - chr4_4:61793734-61793753 Msa0692980:intron 25.0%
! GACACCTATATAGAATATTA+AGG + chr4_4:61793810-61793829 None:intergenic 25.0%
!!! TAGGATTTTGGGATTAAAAT+CGG + chr4_4:61793952-61793971 None:intergenic 25.0%
! AAGAATAATCACAAAATCCT+AGG + chr4_4:61793971-61793990 None:intergenic 25.0%
! TACATGCATATAAAATAGCA+TGG + chr4_4:61794338-61794357 None:intergenic 25.0%
! AGAATCGTTAAATTAATCGT+AGG + chr4_4:61794387-61794406 None:intergenic 25.0%
!! TTTTACGTATAATTGGTAAG+GGG + chr4_4:61794422-61794441 None:intergenic 25.0%
!! GATTTTACGTATAATTGGTA+AGG + chr4_4:61794424-61794443 None:intergenic 25.0%
!! ATCAGGATTTTACGTATAAT+TGG + chr4_4:61794429-61794448 None:intergenic 25.0%
!!! GAACCTAAATTGTTTTAATG+AGG - chr4_4:61794461-61794480 Msa0692980:intron 25.0%
! TAGCCTCATTAAAACAATTT+AGG + chr4_4:61794467-61794486 None:intergenic 25.0%
!! CAAGATAACAACTTTTTATG+AGG + chr4_4:61794503-61794522 None:intergenic 25.0%
! CTTACGTATTATGTGTATTT+GGG - chr4_4:61794540-61794559 Msa0692980:intron 25.0%
! ATTTGGGAATTTCTATCTAA+TGG - chr4_4:61794556-61794575 Msa0692980:intron 25.0%
!! AAAGATAACTTGGAAAGTTT+TGG + chr4_4:61794840-61794859 None:intergenic 25.0%
! ACACATCAAAAAAGATAACT+TGG + chr4_4:61794850-61794869 None:intergenic 25.0%
! GAAGGACAATAAAAACATAA+TGG + chr4_4:61795152-61795171 None:intergenic 25.0%
! TACAACAAAATAAAGGAAGA+AGG + chr4_4:61795170-61795189 None:intergenic 25.0%
!!! TCCTTTATTTTGTTGTAGTT+TGG - chr4_4:61795173-61795192 Msa0692980:intron 25.0%
!!! CCTTTATTTTGTTGTAGTTT+GGG - chr4_4:61795174-61795193 Msa0692980:intron 25.0%
! AATTTAGCATTCATCTTTGA+GGG + chr4_4:61795381-61795400 None:intergenic 25.0%
! TCAAAGATGAATGCTAAATT+GGG - chr4_4:61795381-61795400 Msa0692980:intron 25.0%
! AAAATAAACCAAACACTTGT+TGG - chr4_4:61795551-61795570 Msa0692980:CDS 25.0%
!! ATAATGGGAATATATGTACA+AGG - chr4_4:61795582-61795601 Msa0692980:CDS 25.0%
TACTCATAATTCACTTCACT+TGG - chr4_4:61791840-61791859 Msa0692980:three_prime_UTR 30.0%
! AGAAGCTAGAGTGTAATTTT+TGG - chr4_4:61791909-61791928 Msa0692980:CDS 30.0%
TAATCATGTGAGAAAAAGGA+GGG + chr4_4:61792014-61792033 None:intergenic 30.0%
CTAGTAATCATGTGAGAAAA+AGG + chr4_4:61792018-61792037 None:intergenic 30.0%
CAATGAAATTCAAAGCAACT+AGG - chr4_4:61792207-61792226 Msa0692980:CDS 30.0%
TCAATTTCCTTATACCTCAT+GGG + chr4_4:61792286-61792305 None:intergenic 30.0%
AGGAAATTGAGTTATTATGC+GGG - chr4_4:61792296-61792315 Msa0692980:CDS 30.0%
ATATTCTTCATTGCGGTAAA+AGG + chr4_4:61792339-61792358 None:intergenic 30.0%
CAAACAAACAAGTTGTGAAA+TGG + chr4_4:61792379-61792398 None:intergenic 30.0%
TTCTAATTTCACATCATTCC+TGG - chr4_4:61792506-61792525 Msa0692980:CDS 30.0%
!! GAAGTGTTTGAGACTTATTT+TGG - chr4_4:61792566-61792585 Msa0692980:CDS 30.0%
ATAAATCAGAAATTCCACCA+CGG + chr4_4:61792715-61792734 None:intergenic 30.0%
GTGTGATTTATACATGTTGA+AGG + chr4_4:61792845-61792864 None:intergenic 30.0%
TAGGTATGACATTAGTATTG+TGG + chr4_4:61792867-61792886 None:intergenic 30.0%
AAGAGAAATTAAGTGGGAAA+CGG + chr4_4:61792973-61792992 None:intergenic 30.0%
AGTCAGAAGAGAAATTAAGT+GGG + chr4_4:61792979-61792998 None:intergenic 30.0%
TTATGTACTGTGCAATAAAG+GGG + chr4_4:61793042-61793061 None:intergenic 30.0%
TCTGGCAACATGAATATAAA+AGG + chr4_4:61793135-61793154 None:intergenic 30.0%
TCTAATACAAAATGATCACC+TGG + chr4_4:61793236-61793255 None:intergenic 30.0%
! AGGGAAAACTCTTCTATTTT+TGG - chr4_4:61793316-61793335 Msa0692980:intron 30.0%
! GCTTGATTTTGTTCAATTCT+AGG + chr4_4:61793366-61793385 None:intergenic 30.0%
TTCAAACGGTAACAAAACAA+AGG - chr4_4:61793500-61793519 Msa0692980:intron 30.0%
TCAAACGGTAACAAAACAAA+GGG - chr4_4:61793501-61793520 Msa0692980:intron 30.0%
!!! CATTTTAAGACATGCACAAA+TGG - chr4_4:61793525-61793544 Msa0692980:intron 30.0%
GACAAACTGTAACAAAACAA+AGG - chr4_4:61793548-61793567 Msa0692980:intron 30.0%
CAAACTGTAACAAAACAAAG+GGG - chr4_4:61793550-61793569 Msa0692980:intron 30.0%
ATAGGTGTCTGTTAATAAAG+TGG - chr4_4:61793821-61793840 Msa0692980:intron 30.0%
TTAATTGGAAACACCAATAC+CGG + chr4_4:61793907-61793926 None:intergenic 30.0%
GTTTCCAATTAACCTAAACA+TGG - chr4_4:61793915-61793934 Msa0692980:intron 30.0%
! ACTACCATGTTTAGGTTAAT+TGG + chr4_4:61793922-61793941 None:intergenic 30.0%
!!! AGGATTTTGGGATTAAAATC+GGG + chr4_4:61793951-61793970 None:intergenic 30.0%
!! GATTTTAATCCCAAAATCCT+AGG - chr4_4:61793951-61793970 Msa0692980:intron 30.0%
! TCACAAAATCCTAGGATTTT+GGG + chr4_4:61793963-61793982 None:intergenic 30.0%
! ATCACAAAATCCTAGGATTT+TGG + chr4_4:61793964-61793983 None:intergenic 30.0%
! ATTTTGTGTATACTCGTACT+TGG + chr4_4:61794001-61794020 None:intergenic 30.0%
GTATACACAAAATCCCAATT+TGG - chr4_4:61794008-61794027 Msa0692980:intron 30.0%
AGAATCATTTCACAGAAAAG+TGG + chr4_4:61794050-61794069 None:intergenic 30.0%
GTGAAATGATTCTACGATTA+TGG - chr4_4:61794057-61794076 Msa0692980:intron 30.0%
TTTACGTATAATTGGTAAGG+GGG + chr4_4:61794421-61794440 None:intergenic 30.0%
! TAACAACTTTTTATGAGGGA+GGG + chr4_4:61794498-61794517 None:intergenic 30.0%
! ATAACAACTTTTTATGAGGG+AGG + chr4_4:61794499-61794518 None:intergenic 30.0%
!!! ATCTTGTTTTGCATCCTTTT+AGG - chr4_4:61794517-61794536 Msa0692980:intron 30.0%
ACATAATACGTAAGCCTAAA+AGG + chr4_4:61794534-61794553 None:intergenic 30.0%
GCTTACGTATTATGTGTATT+TGG - chr4_4:61794539-61794558 Msa0692980:intron 30.0%
!!! CTCTACTTTTTTTTTTGCGA+AGG - chr4_4:61794626-61794645 Msa0692980:intron 30.0%
CAAAAGAATGAAACCTGATT+CGG + chr4_4:61794783-61794802 None:intergenic 30.0%
CCTCAGATATTCTTAGAAAA+TGG + chr4_4:61795122-61795141 None:intergenic 30.0%
!! CCATTTTCTAAGAATATCTG+AGG - chr4_4:61795119-61795138 Msa0692980:intron 30.0%
CCCAAACTACAACAAAATAA+AGG + chr4_4:61795177-61795196 None:intergenic 30.0%
ATTTAGCATTCATCTTTGAG+GGG + chr4_4:61795380-61795399 None:intergenic 30.0%
CAATTTAGCATTCATCTTTG+AGG + chr4_4:61795382-61795401 None:intergenic 30.0%
CTCAAAGATGAATGCTAAAT+TGG - chr4_4:61795380-61795399 Msa0692980:intron 30.0%
CAAAGATGAATGCTAAATTG+GGG - chr4_4:61795382-61795401 Msa0692980:intron 30.0%
ACAATATGAGAAAAAGGAAG+AGG + chr4_4:61795513-61795532 None:intergenic 30.0%
TGCAGAACAATATGAGAAAA+AGG + chr4_4:61795519-61795538 None:intergenic 30.0%
TTGTTGGTCAGCATAATAAT+GGG - chr4_4:61795567-61795586 Msa0692980:CDS 30.0%
TAGGTAATAACAGAGGAAAA+AGG - chr4_4:61795615-61795634 Msa0692980:CDS 30.0%
AGGTAATAACAGAGGAAAAA+GGG - chr4_4:61795616-61795635 Msa0692980:CDS 30.0%
TTGTACTTGATTGGATAGTT+TGG - chr4_4:61795648-61795667 Msa0692980:CDS 30.0%
TCTTTGTAAGACGTTACAAG+TGG - chr4_4:61791619-61791638 Msa0692980:three_prime_UTR 35.0%
ATTGAAGAGATCAAGAAACC+AGG + chr4_4:61791759-61791778 None:intergenic 35.0%
GAAGTGAATTATGAGTACCT+TGG + chr4_4:61791837-61791856 None:intergenic 35.0%
TGTTTGGTATGTCAGAATCA+TGG - chr4_4:61791867-61791886 Msa0692980:three_prime_UTR 35.0%
ATTGTGATTATGGCATACTC+AGG - chr4_4:61791954-61791973 Msa0692980:CDS 35.0%
TTGTGATTATGGCATACTCA+GGG - chr4_4:61791955-61791974 Msa0692980:CDS 35.0%
AATCATGTGAGAAAAAGGAG+GGG + chr4_4:61792013-61792032 None:intergenic 35.0%
GTAATCATGTGAGAAAAAGG+AGG + chr4_4:61792015-61792034 None:intergenic 35.0%
! CAGGTTTTCTACTTTGACAT+TGG - chr4_4:61792061-61792080 Msa0692980:intron 35.0%
CTCAATTTCCTTATACCTCA+TGG + chr4_4:61792287-61792306 None:intergenic 35.0%
ACTTGTTTGTTTGCGAGAAA+TGG - chr4_4:61792386-61792405 Msa0692980:intron 35.0%
! TTGGATTTTGCAGTAAATGC+TGG - chr4_4:61792418-61792437 Msa0692980:intron 35.0%
! TGGATTTTGCAGTAAATGCT+GGG - chr4_4:61792419-61792438 Msa0692980:intron 35.0%
!!! TTTGAGACTTATTTTGGTGC+CGG - chr4_4:61792572-61792591 Msa0692980:CDS 35.0%
TACTTGCAGTTGCAAAATTC+AGG + chr4_4:61792643-61792662 None:intergenic 35.0%
GCGAAGTTGTTGAAGATTTA+TGG + chr4_4:61792799-61792818 None:intergenic 35.0%
AGAGAAATTAAGTGGGAAAC+GGG + chr4_4:61792972-61792991 None:intergenic 35.0%
GAGTCAGAAGAGAAATTAAG+TGG + chr4_4:61792980-61792999 None:intergenic 35.0%
AAAAAATCCAGGCTCTATCT+AGG + chr4_4:61793002-61793021 None:intergenic 35.0%
TATGTACTGTGCAATAAAGG+GGG + chr4_4:61793041-61793060 None:intergenic 35.0%
ATCGGATAGGAACAATAATC+TGG + chr4_4:61793153-61793172 None:intergenic 35.0%
TTTAGGGATGTTGCCATTAT+TGG - chr4_4:61793258-61793277 Msa0692980:intron 35.0%
CATGCAAAAACAACAGAAAG+CGG + chr4_4:61793284-61793303 None:intergenic 35.0%
TCTTACGAGTCTCAAGTTTA+AGG + chr4_4:61793429-61793448 None:intergenic 35.0%
TTGAGACTCGTAAGAGTTTA+TGG - chr4_4:61793434-61793453 Msa0692980:intron 35.0%
! GTGGCATTTGAATTTTGTGA+CGG - chr4_4:61793840-61793859 Msa0692980:intron 35.0%
! TGGCATTTGAATTTTGTGAC+GGG - chr4_4:61793841-61793860 Msa0692980:intron 35.0%
AAAACGTTTGCAATCAACTC+CGG - chr4_4:61793885-61793904 Msa0692980:intron 35.0%
!!! GGATTTTGACTACCATGTTT+AGG + chr4_4:61793930-61793949 None:intergenic 35.0%
TACACAAAATCCCAATTTGG+TGG - chr4_4:61794011-61794030 Msa0692980:intron 35.0%
ATACAGGATTCCACCAAATT+GGG + chr4_4:61794024-61794043 None:intergenic 35.0%
TATACAGGATTCCACCAAAT+TGG + chr4_4:61794025-61794044 None:intergenic 35.0%
!! CACAGAAAAGTGGATTATAC+AGG + chr4_4:61794040-61794059 None:intergenic 35.0%
CAGGAACAATTATAGTGCTA+CGG + chr4_4:61794677-61794696 None:intergenic 35.0%
ACAGCAAAATTCTGAATCCT+CGG - chr4_4:61794900-61794919 Msa0692980:intron 35.0%
TTGATCTTGGGAACAACAAT+AGG - chr4_4:61795094-61795113 Msa0692980:intron 35.0%
TGATCTTGGGAACAACAATA+GGG - chr4_4:61795095-61795114 Msa0692980:intron 35.0%
CTCAATCATTCTTCCATTGT+CGG - chr4_4:61795258-61795277 Msa0692980:intron 35.0%
TCAATCATTCTTCCATTGTC+GGG - chr4_4:61795259-61795278 Msa0692980:intron 35.0%
AAGCAGTTTCATGAGATTGT+TGG - chr4_4:61795286-61795305 Msa0692980:intron 35.0%
! TTTAGCATTCATCTTTGAGG+GGG + chr4_4:61795379-61795398 None:intergenic 35.0%
GTTTCGTCAGGGATATAAAT+GGG - chr4_4:61795440-61795459 Msa0692980:intron 35.0%
CTTGTTGGTCAGCATAATAA+TGG - chr4_4:61795566-61795585 Msa0692980:CDS 35.0%
TTTGCTGCACATATTTCACA+TGG - chr4_4:61795711-61795730 Msa0692980:CDS 35.0%
CTGAAAAAACCTCTGCTACT+AGG - chr4_4:61791702-61791721 Msa0692980:three_prime_UTR 40.0%
ATCAAGAAACCAGGAAATGC+CGG + chr4_4:61791750-61791769 None:intergenic 40.0%
! GGATCAAGAACTTTTCAGCA+AGG - chr4_4:61791796-61791815 Msa0692980:three_prime_UTR 40.0%
! CTCTAGCTTCTGCAAAATCA+CGG + chr4_4:61791900-61791919 None:intergenic 40.0%
GGTCACTCTGATTGTGATTA+TGG - chr4_4:61791944-61791963 Msa0692980:CDS 40.0%
GACATTGGAGAGAATAGAAG+AGG - chr4_4:61792076-61792095 Msa0692980:intron 40.0%
TAGAAGAGGCCGTTTCTTAA+AGG - chr4_4:61792090-61792109 Msa0692980:intron 40.0%
TTCAAAGCAACTAGGCTTTG+TGG - chr4_4:61792215-61792234 Msa0692980:CDS 40.0%
! TCAAAGCAACTAGGCTTTGT+GGG - chr4_4:61792216-61792235 Msa0692980:CDS 40.0%
TTTCTCTCCCATGAGGTATA+AGG - chr4_4:61792276-61792295 Msa0692980:CDS 40.0%
TATTATGCGGGTTCAATCTC+TGG - chr4_4:61792308-61792327 Msa0692980:CDS 40.0%
TTCTTCATTGCGGTAAAAGG+CGG + chr4_4:61792336-61792355 None:intergenic 40.0%
CTTGTTAGACATTCCTAACG+TGG - chr4_4:61792445-61792464 Msa0692980:intron 40.0%
GAGAACATGATGATATGCAG+GGG + chr4_4:61792609-61792628 None:intergenic 40.0%
CGAGAACATGATGATATGCA+GGG + chr4_4:61792610-61792629 None:intergenic 40.0%
TCGAGAACATGATGATATGC+AGG + chr4_4:61792611-61792630 None:intergenic 40.0%
GAGAAATTAAGTGGGAAACG+GGG + chr4_4:61792971-61792990 None:intergenic 40.0%
ACCTTCAAACCCACATTGAA+GGG + chr4_4:61793181-61793200 None:intergenic 40.0%
TACCTTCAAACCCACATTGA+AGG + chr4_4:61793182-61793201 None:intergenic 40.0%
TTCAATGTGGGTTTGAAGGT+AGG - chr4_4:61793181-61793200 Msa0692980:intron 40.0%
! TTTGCATGTGCTGTTACACA+AGG - chr4_4:61793296-61793315 Msa0692980:intron 40.0%
! TTGCATGTGCTGTTACACAA+GGG - chr4_4:61793297-61793316 Msa0692980:intron 40.0%
AGTTTGACAAGCATGCTTCA+AGG - chr4_4:61793697-61793716 Msa0692980:intron 40.0%
TAAAACCGGTCTGCTTTACA+AGG - chr4_4:61793748-61793767 Msa0692980:intron 40.0%
TAGTTCCTTGTAAAGCAGAC+CGG + chr4_4:61793756-61793775 None:intergenic 40.0%
TTTGCAATCAACTCCGGTAT+TGG - chr4_4:61793891-61793910 Msa0692980:intron 40.0%
! TGTATACTCGTACTTGGTGA+GGG + chr4_4:61793995-61794014 None:intergenic 40.0%
TGATTCTACGATTATGGTCG+CGG - chr4_4:61794063-61794082 Msa0692980:intron 40.0%
GGTTCAAGGTAGTCAAAATC+AGG + chr4_4:61794446-61794465 None:intergenic 40.0%
AGCACTATAATTGTTCCTGC+AGG - chr4_4:61794678-61794697 Msa0692980:intron 40.0%
!! ATGAAACCTGATTCGGAAGA+AGG + chr4_4:61794776-61794795 None:intergenic 40.0%
!!! AGTTTTTTTTCCCCCTGCTT+AGG - chr4_4:61794812-61794831 Msa0692980:intron 40.0%
!!! AAAGTTTTGGTGCCTAAGCA+GGG + chr4_4:61794827-61794846 None:intergenic 40.0%
CGACTACTTTCAGATGATGT+TGG - chr4_4:61794925-61794944 Msa0692980:intron 40.0%
CACATTCAATTCAGAAGAGG+TGG + chr4_4:61794986-61795005 None:intergenic 40.0%
CACCTCTTCTGAATTGAATG+TGG - chr4_4:61794984-61795003 Msa0692980:intron 40.0%
GTCCACATTCAATTCAGAAG+AGG + chr4_4:61794989-61795008 None:intergenic 40.0%
CTTCTGAATTGAATGTGGAC+AGG - chr4_4:61794989-61795008 Msa0692980:intron 40.0%
TGAATTGAATGTGGACAGGT+CGG - chr4_4:61794993-61795012 Msa0692980:intron 40.0%
TCAGGATGAAATTGGGAACT+TGG - chr4_4:61795029-61795048 Msa0692980:intron 40.0%
CAGGATGAAATTGGGAACTT+GGG - chr4_4:61795030-61795049 Msa0692980:intron 40.0%
AGGATGAAATTGGGAACTTG+GGG - chr4_4:61795031-61795050 Msa0692980:intron 40.0%
! TTGATCAGCTCTGATCACTT+TGG + chr4_4:61795061-61795080 None:intergenic 40.0%
GATCTTGGGAACAACAATAG+GGG - chr4_4:61795096-61795115 Msa0692980:intron 40.0%
! GTTATTTCATTGCAGGTTGC+AGG - chr4_4:61795223-61795242 Msa0692980:intron 40.0%
CGACAATGGAAGAATGATTG+AGG + chr4_4:61795260-61795279 None:intergenic 40.0%
CAATCATTCTTCCATTGTCG+GGG - chr4_4:61795260-61795279 Msa0692980:intron 40.0%
! TGAGATTGTTGGTCACTTTG+TGG - chr4_4:61795297-61795316 Msa0692980:intron 40.0%
TCACTTTGTGGAAATCACCA+AGG - chr4_4:61795309-61795328 Msa0692980:intron 40.0%
CAACTGACATACCCTCAATT+CGG + chr4_4:61795336-61795355 None:intergenic 40.0%
TTATATCCCTGACGAAACCT+TGG + chr4_4:61795438-61795457 None:intergenic 40.0%
GGTTTCGTCAGGGATATAAA+TGG - chr4_4:61795439-61795458 Msa0692980:intron 40.0%
TATGCTGACCAACAAGTGTT+TGG + chr4_4:61795562-61795581 None:intergenic 40.0%
ACCAGAGACTTGTACTTGAT+TGG - chr4_4:61795639-61795658 Msa0692980:CDS 40.0%
TCCAATCAAGTACAAGTCTC+TGG + chr4_4:61795643-61795662 None:intergenic 40.0%
TTGATTGGATAGTTTGGCGA+TGG - chr4_4:61795654-61795673 Msa0692980:CDS 40.0%
TGATTGGATAGTTTGGCGAT+GGG - chr4_4:61795655-61795674 Msa0692980:CDS 40.0%
GATCTGAAAGAGAATCCTCG+TGG - chr4_4:61791662-61791681 Msa0692980:three_prime_UTR 45.0%
ATCTTAAGGTAACGACCACG+AGG + chr4_4:61791680-61791699 None:intergenic 45.0%
ACCATCATCGTTCCTTTCTC+CGG - chr4_4:61791728-61791747 Msa0692980:three_prime_UTR 45.0%
GGAATTGCAGCTTGATACCA+AGG - chr4_4:61791817-61791836 Msa0692980:three_prime_UTR 45.0%
TAGCTTCTGCAAAATCACGG+TGG + chr4_4:61791897-61791916 None:intergenic 45.0%
ACACTCTCTTTCGCTCGAAT+TGG - chr4_4:61792125-61792144 Msa0692980:intron 45.0%
! CAAAGCAACTAGGCTTTGTG+GGG - chr4_4:61792217-61792236 Msa0692980:CDS 45.0%
!! GGCTTTGTGGGGTTTTCAAT+TGG - chr4_4:61792228-61792247 Msa0692980:CDS 45.0%
GTGTTTCTTTCTCTCCCATG+AGG - chr4_4:61792269-61792288 Msa0692980:CDS 45.0%
TCTTCATTGCGGTAAAAGGC+GGG + chr4_4:61792335-61792354 None:intergenic 45.0%
GCATTTCAAGCAACCACGTT+AGG + chr4_4:61792461-61792480 None:intergenic 45.0%
CACATCATTCCTGGTCATCA+TGG - chr4_4:61792515-61792534 Msa0692980:CDS 45.0%
ATCATTCCTGGTCATCATGG+TGG - chr4_4:61792518-61792537 Msa0692980:CDS 45.0%
TCATTCCTGGTCATCATGGT+GGG - chr4_4:61792519-61792538 Msa0692980:CDS 45.0%
ATCATGTTGAAGTCCTTCCG+TGG - chr4_4:61792695-61792714 Msa0692980:intron 45.0%
ATCAGAAATTCCACCACGGA+AGG + chr4_4:61792711-61792730 None:intergenic 45.0%
ATTAAGTGGGAAACGGGGTT+TGG + chr4_4:61792966-61792985 None:intergenic 45.0%
TGTGGGTTTGAAGGTAGGAA+AGG - chr4_4:61793186-61793205 Msa0692980:intron 45.0%
GTGGGTTTGAAGGTAGGAAA+GGG - chr4_4:61793187-61793206 Msa0692980:intron 45.0%
TGGGTTTGAAGGTAGGAAAG+GGG - chr4_4:61793188-61793207 Msa0692980:intron 45.0%
TTTGAAGGTAGGAAAGGGGA+GGG - chr4_4:61793192-61793211 Msa0692980:intron 45.0%
CAACAGAAAGCGGCCAATAA+TGG + chr4_4:61793274-61793293 None:intergenic 45.0%
CTTCAAGGCATGTATCACAC+TGG - chr4_4:61793712-61793731 Msa0692980:intron 45.0%
!!! ATTTTGTGACGGGTGACACT+AGG - chr4_4:61793851-61793870 Msa0692980:intron 45.0%
! GTGTATACTCGTACTTGGTG+AGG + chr4_4:61793996-61794015 None:intergenic 45.0%
CAGAGATTAATGAAGCCTCG+AGG - chr4_4:61794745-61794764 Msa0692980:intron 45.0%
! GCTTTTCCTTCTTCCGAATC+AGG - chr4_4:61794767-61794786 Msa0692980:intron 45.0%
!!! AAGTTTTGGTGCCTAAGCAG+GGG + chr4_4:61794826-61794845 None:intergenic 45.0%
!!! GAAAGTTTTGGTGCCTAAGC+AGG + chr4_4:61794828-61794847 None:intergenic 45.0%
CTTTCAGATGATGTTGGTGC+TGG - chr4_4:61794931-61794950 Msa0692980:intron 45.0%
TTCAATTCAGAAGAGGTGGC+AGG + chr4_4:61794982-61795001 None:intergenic 45.0%
TTGCCAGCTCAGGATGAAAT+TGG - chr4_4:61795021-61795040 Msa0692980:intron 45.0%
TGCCAGCTCAGGATGAAATT+GGG - chr4_4:61795022-61795041 Msa0692980:intron 45.0%
TTCCCAATTTCATCCTGAGC+TGG + chr4_4:61795027-61795046 None:intergenic 45.0%
GGATGAAATTGGGAACTTGG+GGG - chr4_4:61795032-61795051 Msa0692980:intron 45.0%
AATCACCAAGGACCGAATTG+AGG - chr4_4:61795321-61795340 Msa0692980:intron 45.0%
ATCACCAAGGACCGAATTGA+GGG - chr4_4:61795322-61795341 Msa0692980:intron 45.0%
TTTGAGGGGGATCAATTGTG+CGG + chr4_4:61795366-61795385 None:intergenic 45.0%
GAATGCTAAATTGGGGCTTG+TGG - chr4_4:61795389-61795408 Msa0692980:intron 45.0%
GATTGGATAGTTTGGCGATG+GGG - chr4_4:61795656-61795675 Msa0692980:CDS 45.0%
GATGGTAGACCTAGTAGCAG+AGG + chr4_4:61791714-61791733 None:intergenic 50.0%
TTCCTTTCTCCGGCATTTCC+TGG - chr4_4:61791738-61791757 Msa0692980:three_prime_UTR 50.0%
AACCAGGAAATGCCGGAGAA+AGG + chr4_4:61791743-61791762 None:intergenic 50.0%
!! CACTTCACTTGGTGCGTGTT+TGG - chr4_4:61791851-61791870 Msa0692980:three_prime_UTR 50.0%
CTTCATTGCGGTAAAAGGCG+GGG + chr4_4:61792334-61792353 None:intergenic 50.0%
ATCTACCCACCATGATGACC+AGG + chr4_4:61792527-61792546 None:intergenic 50.0%
!!! GAGACTTATTTTGGTGCCGG+TGG - chr4_4:61792575-61792594 Msa0692980:CDS 50.0%
ATGTTGAAGTCCTTCCGTGG+TGG - chr4_4:61792698-61792717 Msa0692980:intron 50.0%
TCTGACTCCTAGATAGAGCC+TGG - chr4_4:61792992-61793011 Msa0692980:intron 50.0%
!! TTGAAGGGCAAGCATCGGAT+AGG + chr4_4:61793166-61793185 None:intergenic 50.0%
CCACATTGAAGGGCAAGCAT+CGG + chr4_4:61793171-61793190 None:intergenic 50.0%
CGATGCTTGCCCTTCAATGT+GGG - chr4_4:61793169-61793188 Msa0692980:intron 50.0%
GCCCTTCAATGTGGGTTTGA+AGG - chr4_4:61793177-61793196 Msa0692980:intron 50.0%
GTTTGAAGGTAGGAAAGGGG+AGG - chr4_4:61793191-61793210 Msa0692980:intron 50.0%
TTGAAGGTAGGAAAGGGGAG+GGG - chr4_4:61793193-61793212 Msa0692980:intron 50.0%
!! GGTGAAAGGCGTTGAAAACC+AGG - chr4_4:61793215-61793234 Msa0692980:intron 50.0%
ACTCTACGTAGACTCGCGAA+GGG - chr4_4:61793402-61793421 Msa0692980:intron 50.0%
TTCTACGATTATGGTCGCGG+TGG - chr4_4:61794066-61794085 Msa0692980:intron 50.0%
! TGTCTGAAGCTTCTGTCAGC+AGG - chr4_4:61794649-61794668 Msa0692980:intron 50.0%
TTGTTCCTGCAGGAAGTTCC+AGG - chr4_4:61794688-61794707 Msa0692980:intron 50.0%
TGTTCCTGCAGGAAGTTCCA+GGG - chr4_4:61794689-61794708 Msa0692980:intron 50.0%
CAGGAAGTTCCAGGGATGAA+GGG - chr4_4:61794697-61794716 Msa0692980:intron 50.0%
AAGTTCCAGGGATGAAGGGT+GGG - chr4_4:61794701-61794720 Msa0692980:intron 50.0%
GGCAGCATTCAGGAACATTC+TGG - chr4_4:61794722-61794741 Msa0692980:intron 50.0%
!!! AGTTTTGGTGCCTAAGCAGG+GGG + chr4_4:61794825-61794844 None:intergenic 50.0%
ATCTGAAAGTAGTCGCTCCG+AGG + chr4_4:61794920-61794939 None:intergenic 50.0%
!! GTTGGTGCTGGCTTCATATC+TGG - chr4_4:61794943-61794962 Msa0692980:intron 50.0%
CATACCCTCAATTCGGTCCT+TGG + chr4_4:61795329-61795348 None:intergenic 50.0%
GCCGGAGAAAGGAACGATGA+TGG + chr4_4:61791732-61791751 None:intergenic 55.0%
TGCAGGGGTTTGATCTCCAC+CGG + chr4_4:61792594-61792613 None:intergenic 55.0%
AAGTGGGAAACGGGGTTTGG+AGG + chr4_4:61792963-61792982 None:intergenic 55.0%
CCGATGCTTGCCCTTCAATG+TGG - chr4_4:61793168-61793187 Msa0692980:intron 55.0%
TGAAGGTAGGAAAGGGGAGG+GGG - chr4_4:61793194-61793213 Msa0692980:intron 55.0%
GACTCTACGTAGACTCGCGA+AGG - chr4_4:61793401-61793420 Msa0692980:intron 55.0%
TACGATTATGGTCGCGGTGG+TGG - chr4_4:61794069-61794088 Msa0692980:intron 55.0%
!! CGCGGTGGTGGAACTACAAA+AGG - chr4_4:61794081-61794100 Msa0692980:intron 55.0%
TCATCCCTGGAACTTCCTGC+AGG + chr4_4:61794696-61794715 None:intergenic 55.0%
GCAGGAAGTTCCAGGGATGA+AGG - chr4_4:61794696-61794715 Msa0692980:intron 55.0%
GAAGTTCCAGGGATGAAGGG+TGG - chr4_4:61794700-61794719 Msa0692980:intron 55.0%
ATGAAGGGTGGGCAGCATTC+AGG - chr4_4:61794712-61794731 Msa0692980:intron 55.0%
CGGAAGAAGGAAAAGCCTCG+AGG + chr4_4:61794763-61794782 None:intergenic 55.0%
!! GTCGGTTGATTTGCCAGCTC+AGG - chr4_4:61795011-61795030 Msa0692980:intron 55.0%
AACTGCTTGAGCCCCGACAA+TGG + chr4_4:61795274-61795293 None:intergenic 55.0%
TAAGTAGTCCCCCTCTGCCA+AGG - chr4_4:61795418-61795437 Msa0692980:intron 55.0%
TGACGAAACCTTGGCAGAGG+GGG + chr4_4:61795429-61795448 None:intergenic 55.0%
CTGACGAAACCTTGGCAGAG+GGG + chr4_4:61795430-61795449 None:intergenic 55.0%
CCTGACGAAACCTTGGCAGA+GGG + chr4_4:61795431-61795450 None:intergenic 55.0%
CCTCTGCCAAGGTTTCGTCA+GGG - chr4_4:61795429-61795448 Msa0692980:intron 55.0%
TTGGAGGAGGAGGAGGAGGA+AGG + chr4_4:61792947-61792966 None:intergenic 60.0%
GAAACGGGGTTTGGAGGAGG+AGG + chr4_4:61792957-61792976 None:intergenic 60.0%
TGGGAAACGGGGTTTGGAGG+AGG + chr4_4:61792960-61792979 None:intergenic 60.0%
AGGAAAGGGGAGGGGGTGAA+AGG - chr4_4:61793201-61793220 Msa0692980:intron 60.0%
CCCTCTGCCAAGGTTTCGTC+AGG - chr4_4:61795428-61795447 Msa0692980:intron 60.0%
CCCTGACGAAACCTTGGCAG+AGG + chr4_4:61795432-61795451 None:intergenic 60.0%
!! TGGTGGTGGTGGTGCTGACG+TGG - chr4_4:61791592-61791611 Msa0692980:three_prime_UTR 65.0%
GGGTTTGGAGGAGGAGGAGG+AGG + chr4_4:61792951-61792970 None:intergenic 65.0%
ACGGGGTTTGGAGGAGGAGG+AGG + chr4_4:61792954-61792973 None:intergenic 65.0%
TGCTGCCCACCCTTCATCCC+TGG + chr4_4:61794709-61794728 None:intergenic 65.0%
ATGGAGGGAAGCTCCGGGGG+TGG - chr4_4:61791536-61791555 Msa0692980:three_prime_UTR 70.0%
! GGTGGTGGTAGCAGCGGTGG+AGG - chr4_4:61791569-61791588 Msa0692980:three_prime_UTR 70.0%
GGTGGTAGCAGCGGTGGAGG+TGG - chr4_4:61791572-61791591 Msa0692980:three_prime_UTR 70.0%
GGTAGCAGCGGTGGAGGTGG+TGG - chr4_4:61791575-61791594 Msa0692980:three_prime_UTR 70.0%
! AGCAGCGGTGGAGGTGGTGG+TGG - chr4_4:61791578-61791597 Msa0692980:three_prime_UTR 70.0%
!! AGCGGTGGAGGTGGTGGTGG+TGG - chr4_4:61791581-61791600 Msa0692980:three_prime_UTR 70.0%
GAGGGAAGCTCCGGGGGTGG+TGG - chr4_4:61791539-61791558 Msa0692980:three_prime_UTR 75.0%
! GGAAGCTCCGGGGGTGGTGG+TGG - chr4_4:61791542-61791561 Msa0692980:three_prime_UTR 75.0%
!! AGCTCCGGGGGTGGTGGTGG+CGG - chr4_4:61791545-61791564 Msa0692980:three_prime_UTR 75.0%
! GGCGGCGGTGGTGGTAGCAG+CGG - chr4_4:61791563-61791582 Msa0692980:three_prime_UTR 75.0%
! GGCGGTGGTGGTAGCAGCGG+TGG - chr4_4:61791566-61791585 Msa0692980:three_prime_UTR 75.0%
!!! TCCGGGGGTGGTGGTGGCGG+CGG - chr4_4:61791548-61791567 Msa0692980:three_prime_UTR 80.0%
! ACCGCCGCCACCACCACCCC+CGG + chr4_4:61791552-61791571 None:intergenic 80.0%
!!! GGTGGTGGTGGCGGCGGTGG+TGG - chr4_4:61791554-61791573 Msa0692980:three_prime_UTR 80.0%
!!! GGGGGTGGTGGTGGCGGCGG+TGG - chr4_4:61791551-61791570 Msa0692980:three_prime_UTR 85.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 61791536 61795751 61791536 ID=Msa0692980;Name=Msa0692980
chr4_4 mRNA 61791536 61795751 61791536 ID=Msa0692980-mRNA-1;Parent=Msa0692980;Name=Msa0692980-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.75|0.8|1|1|1|5|361|275
chr4_4 exon 61791536 61792049 61791536 ID=Msa0692980-mRNA-1:exon:17224;Parent=Msa0692980-mRNA-1
chr4_4 exon 61792147 61792383 61792147 ID=Msa0692980-mRNA-1:exon:17223;Parent=Msa0692980-mRNA-1
chr4_4 exon 61792499 61792639 61792499 ID=Msa0692980-mRNA-1:exon:17222;Parent=Msa0692980-mRNA-1
chr4_4 exon 61795176 61795223 61795176 ID=Msa0692980-mRNA-1:exon:17221;Parent=Msa0692980-mRNA-1
chr4_4 exon 61795503 61795751 61795503 ID=Msa0692980-mRNA-1:exon:17220;Parent=Msa0692980-mRNA-1
chr4_4 CDS 61795503 61795751 61795503 ID=Msa0692980-mRNA-1:cds;Parent=Msa0692980-mRNA-1
chr4_4 CDS 61795176 61795223 61795176 ID=Msa0692980-mRNA-1:cds;Parent=Msa0692980-mRNA-1
chr4_4 CDS 61792499 61792639 61792499 ID=Msa0692980-mRNA-1:cds;Parent=Msa0692980-mRNA-1
chr4_4 CDS 61792147 61792383 61792147 ID=Msa0692980-mRNA-1:cds;Parent=Msa0692980-mRNA-1
chr4_4 CDS 61791897 61792049 61791897 ID=Msa0692980-mRNA-1:cds;Parent=Msa0692980-mRNA-1
chr4_4 three_prime_UTR 61791536 61791896 61791536 ID=Msa0692980-mRNA-1:three_prime_utr;Parent=Msa0692980-mRNA-1
Gene Sequence

>Msa0692980

ATGGAGGGAAGCTCCGGGGGTGGTGGTGGCGGCGGTGGTGGTAGCAGCGGTGGAGGTGGTGGTGGTGGTGCTGACGTGGAGCTTCTTTGTAAGACGTTACAAGTGGAACACAAGCTATTTTACTTCGATCTGAAAGAGAATCCTCGTGGTCGTTACCTTAAGATTTCTGAAAAAACCTCTGCTACTAGGTCTACCATCATCGTTCCTTTCTCCGGCATTTCCTGGTTTCTTGATCTCTTCAATTATTATGTTTTCTACTTTGACATTGGAGAGAATAGAAGAGGCCGTTTCTTAAAGGTGTCTGAAGCTTCTGTCAGCAGGAACCGTAGCACTATAATTGTTCCTGCAGGAAGTTCCAGGGATGAAGGGTGGGCAGCATTCAGGAACATTCTGGCAGAGATTAATGAAGCCTCGAGGCTTTTCCTTCTTCCGAATCAGCAAAATTCTGAATCCTCGGAGCGACTACTTTCAGATGATGTTGGTGCTGGCTTCATATCTGGTCATAATACTACACCTGCCACCTCTTCTGAATTGAATGTGGACAGGTCGGTTGATTTGCCAGCTCAGGATGAAATTGGGAACTTGGGGGTCTCCAAAGTGATCAGAGCTGATCAAAAAAGATTTTTCTTTGATCTTGGGAACAACAATAGGGGCCATTTTCTAAGAATATCTGAGGTTGCAGGTTCTGATCGATCCTCAATCATTCTTCCATTGTCGGGGCTCAAGCAGTTTCATGAGATTGTTGGTCACTTTGTGGAAATCACCAAGGACCGAATTGAGGGTATGTCAGTTGCTAATGTCCGCACAATTGATCCCCCTCAAAGATGA

Protein sequence

>Msa0692980

MEGSSGGGGGGGGGSSGGGGGGGADVELLCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPFSGISWFLDLFNYYVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWAAFRNILAEINEASRLFLLPNQQNSESSERLLSDDVGAGFISGHNTTPATSSELNVDRSVDLPAQDEIGNLGVSKVIRADQKRFFFDLGNNNRGHFLRISEVAGSDRSSIILPLSGLKQFHEIVGHFVEITKDRIEGMSVANVRTIDPPQR*