AlfalfaGEDB | Msa0460660

M. sativa cultivar zhongmu-4 / Msa0460660

KEGG: -
GO: GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0008150 GO:0012505 GO:0016020 GO:0019899 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051020 GO:0065007 GO:0065009 GO:0098772
PFAM: PF16457.8

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0460660	CAC84086.1	99.227	1035	8	0	1	1035	1	1035	0.0	2133

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0460660	sp\|Q947D2\|PRAF1_ARATH	38.818	863	420	19	261	1032	234	1079	2.54e-177	550

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0460660	Q84RS2	99.227	1035	8	0	1	1035	1	1035	0.0	2133

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0053110	Msa0460660	0.800198	1.612629e-48	-8.615850e-47
Msa0063870	Msa0460660	0.803279	3.760183e-49	-8.615850e-47
Msa0103000	Msa0460660	0.806274	8.906086e-50	-8.615850e-47
Msa0110970	Msa0460660	0.804282	2.328097e-49	-8.615850e-47
Msa0232690	Msa0460660	0.810402	1.173592e-50	-8.615850e-47
Msa0238890	Msa0460660	0.802138	6.468434e-49	-8.615850e-47
Msa0289890	Msa0460660	0.805487	1.303461e-49	-8.615850e-47
Msa0308830	Msa0460660	0.805719	1.165363e-49	-8.615850e-47
Msa0367800	Msa0460660	0.887894	9.551999e-73	-8.615850e-47
Msa0413930	Msa0460660	0.806318	8.717442e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0460660	MtrunA17_Chr3g0109811	95.849	1036	38	2	1	1035	1	1032	0.0	2069
Msa0460660	MtrunA17_Chr3g0094741	41.448	1105	525	21	15	1032	26	1095	0.0	762
Msa0460660	MtrunA17_Chr5g0442001	42.134	1106	528	25	8	1032	10	1084	0.0	747
Msa0460660	MtrunA17_Chr8g0362061	38.826	1056	550	24	16	1032	10	1008	0.0	668
Msa0460660	MtrunA17_Chr6g0463421	39.042	981	520	18	15	954	12	955	0.0	637
Msa0460660	MtrunA17_Chr6g0463421	53.968	63	29	0	972	1034	1034	1096	4.05e-16	84.0
Msa0460660	MtrunA17_Chr1g0202151	38.825	953	449	15	15	898	11	898	0.0	623
Msa0460660	MtrunA17_Chr7g0244411	38.095	924	478	18	14	898	10	878	0.0	587
Msa0460660	MtrunA17_Chr1g0167471	41.244	788	389	11	3	773	8	738	0.0	564
Msa0460660	MtrunA17_Chr4g0013271	47.545	448	224	5	266	711	36	474	8.01e-138	441

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0460660	AT1G65920.1	47.086	1064	471	23	3	1033	1	1005	0.0	894
Msa0460660	AT1G65920.2	46.608	1017	451	23	50	1033	2	959	0.0	838
Msa0460660	AT5G19420.1	41.906	1112	535	27	1	1032	7	1087	0.0	757
Msa0460660	AT5G12350.1	41.310	1099	529	24	5	1032	10	1063	0.0	745
Msa0460660	AT5G19420.2	41.720	1093	528	25	20	1032	58	1121	0.0	742
Msa0460660	AT5G19420.3	48.285	758	356	12	1	736	7	750	0.0	656
Msa0460660	AT1G69710.1	38.570	1063	560	23	15	1032	24	1038	0.0	631
Msa0460660	AT1G69710.2	38.570	1063	560	23	15	1032	11	1025	0.0	631
Msa0460660	AT5G42140.2	44.847	718	360	10	16	726	12	700	0.0	595
Msa0460660	AT5G42140.2	33.193	238	125	3	829	1032	823	1060	1.23e-22	105

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Find 244 sgRNAs with CRISPR-Local

Find 393 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGTTGAGTCTCTTA+AGG	0.360820	3_3:-58148611	Msa0460660:CDS
AAAAGAGGTCATAAAAGCTT+TGG	0.434327	3_3:-58147170	Msa0460660:CDS
AAACATAACTGTTATAATTG+CGG	0.598861	3_3:-58147962	Msa0460660:CDS
AAACATGCCTAGTGGAAGGA+AGG	0.587377	3_3:-58147663	Msa0460660:CDS
AAACTTTCATTACCTGTCGA+AGG	0.594396	3_3:-58148766	Msa0460660:CDS
AAAGAAGTTGAGTCTCTTAA+GGG	0.422109	3_3:-58148610	Msa0460660:CDS
AAAGCATCTAAATAATGATA+AGG	0.493227	3_3:-58151856	Msa0460660:five_prime_UTR
AAAGGCCTTGCTCTTAACCG+GGG	0.699682	3_3:+58147886	None:intergenic
AAAGGTGAAAATGGAGAACT+AGG	0.486261	3_3:-58148166	Msa0460660:CDS
AAATATTCATGAATTAATAA+AGG	0.383840	3_3:+58145939	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCTGTTTATTTCACTTCGT+AGG	+	chr3_3:58145918-58145937	None:intergenic	30.0%
AAGAAGAACATAAGAGACAA+AGG	+	chr3_3:58146155-58146174	None:intergenic	30.0%
AAGTGTTACCTTCAAAATTC+TGG	+	chr3_3:58146524-58146543	None:intergenic	30.0%
TTCAGTCTAACTATATGTGT+CGG	+	chr3_3:58146596-58146615	None:intergenic	30.0%
TATCAATGATTCATAGCACT+TGG	-	chr3_3:58146682-58146701	Msa0460660:CDS	30.0%
ATCAATGATTCATAGCACTT+GGG	-	chr3_3:58146683-58146702	Msa0460660:CDS	30.0%
TCCTAGAGAATCTGAAAAAT+TGG	-	chr3_3:58146943-58146962	Msa0460660:intron	30.0%
GATTTGAACTTTGTACTTTG+AGG	-	chr3_3:58147801-58147820	Msa0460660:CDS	30.0%
CTCTTTGTCATATACATTTG+AGG	-	chr3_3:58147866-58147885	Msa0460660:CDS	30.0%
TGAAACCTTAGTAAATTGAG+AGG	+	chr3_3:58148121-58148140	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	58145865	58152102	58145865	ID=Msa0460660;Name=Msa0460660
chr3_3	mRNA	58145865	58152102	58145865	ID=Msa0460660-mRNA-1;Parent=Msa0460660;Name=Msa0460660-mRNA-1;_AED=0.04;_eAED=0.04;_QI=348\|1\|1\|1\|1\|1\|9\|237\|1035
chr3_3	exon	58145865	58146192	58145865	ID=Msa0460660-mRNA-1:exon:12050;Parent=Msa0460660-mRNA-1
chr3_3	exon	58146382	58146719	58146382	ID=Msa0460660-mRNA-1:exon:12049;Parent=Msa0460660-mRNA-1
chr3_3	exon	58147162	58147308	58147162	ID=Msa0460660-mRNA-1:exon:12048;Parent=Msa0460660-mRNA-1
chr3_3	exon	58147460	58149472	58147460	ID=Msa0460660-mRNA-1:exon:12047;Parent=Msa0460660-mRNA-1
chr3_3	exon	58149833	58150027	58149833	ID=Msa0460660-mRNA-1:exon:12046;Parent=Msa0460660-mRNA-1
chr3_3	exon	58150251	58150337	58150251	ID=Msa0460660-mRNA-1:exon:12045;Parent=Msa0460660-mRNA-1
chr3_3	exon	58150440	58150529	58150440	ID=Msa0460660-mRNA-1:exon:12044;Parent=Msa0460660-mRNA-1
chr3_3	exon	58150898	58150984	58150898	ID=Msa0460660-mRNA-1:exon:12043;Parent=Msa0460660-mRNA-1
chr3_3	exon	58151695	58152102	58151695	ID=Msa0460660-mRNA-1:exon:12042;Parent=Msa0460660-mRNA-1
chr3_3	five_prime_UTR	58151755	58152102	58151755	ID=Msa0460660-mRNA-1:five_prime_utr;Parent=Msa0460660-mRNA-1
chr3_3	CDS	58151695	58151754	58151695	ID=Msa0460660-mRNA-1:cds;Parent=Msa0460660-mRNA-1
chr3_3	CDS	58150898	58150984	58150898	ID=Msa0460660-mRNA-1:cds;Parent=Msa0460660-mRNA-1
chr3_3	CDS	58150440	58150529	58150440	ID=Msa0460660-mRNA-1:cds;Parent=Msa0460660-mRNA-1
chr3_3	CDS	58150251	58150337	58150251	ID=Msa0460660-mRNA-1:cds;Parent=Msa0460660-mRNA-1
chr3_3	CDS	58149833	58150027	58149833	ID=Msa0460660-mRNA-1:cds;Parent=Msa0460660-mRNA-1
chr3_3	CDS	58147460	58149472	58147460	ID=Msa0460660-mRNA-1:cds;Parent=Msa0460660-mRNA-1
chr3_3	CDS	58147162	58147308	58147162	ID=Msa0460660-mRNA-1:cds;Parent=Msa0460660-mRNA-1
chr3_3	CDS	58146382	58146719	58146382	ID=Msa0460660-mRNA-1:cds;Parent=Msa0460660-mRNA-1
chr3_3	CDS	58146102	58146192	58146102	ID=Msa0460660-mRNA-1:cds;Parent=Msa0460660-mRNA-1
chr3_3	three_prime_UTR	58145865	58146101	58145865	ID=Msa0460660-mRNA-1:three_prime_utr;Parent=Msa0460660-mRNA-1

Gene Sequence

>Msa0460660

ATGACAATGGAAGAAGTTTCTTTGGCTGGAACCCTCCCTTTTGATAGAGCTGTTGAACAGGCAATTGTATCTATAAAGAAAGGTGCATATTTACTCAAGTGTGGTAACAGAGGAAAGCCAAAACTCTGTCCTTTCCGACTTTCTCCGGATGAGAGAAATTTGGTATGGTGCTCAGGGAAGCAGGAAAAGCATTTGCGATTGAGCGGAGTAACCAAAATTGTTCAAGGAGAGGGAAATATAAGGTCTCAGAGACAAAACGAAACCGAAAAGGAGTGCCATTCATTTTCCCTGATCTATGCTAATGGTGAACACTCTCTTGATCTGATATGCAAAGACAAAGCACAAGCTGCTACTTGGTTTGTTGGATTGAAAGCTGTGATTTCTAGGTGCCAGCAACCAAAAGCTTTTAGTAGTTTAAGAAGCTGCAAAGGAGTGCAGAGTTGTGTCAGTAGTCCCTCTGGAATTTTACGCCGAAAGAAAAATCTTGGTCTTCTAGATGACGCCTCTCAATTTACTAAGGTACACAGCGTATGCGCAAGTCCTACTTTGTCACTTTCAGAACGGTGTTTTTCTGACGGCTTGTCATATAAATCTGACTTTTATTCATCGGCATCGTCCCTCTCCAGCATTCATGGCATAACAGACAATTCAGTCCCAAGTTCTCCATATATTAATCCAGATATTCATAGCAATATAAAAACATCTCGTTTCGAAAAAGAGTACAAGAAGGAATTGTCATCAAATAGATCTATCATGCCTCCTGCCTCCGCACTTGTAGGAAACAATGTATTGAAGGATGTCATGATATGGGGTGGTGGAATTGGTTGCCTTGTAGGGATTGTGAATGAAAGGTTTGTTCAAAATAGTATTTATTCTTTAGTTCCAAAGTTACTAGAATCCACCGCAATGTTAGATGTACAAAATGTAGCTTTAGGAGGAAACCATGCTGCAATAGTTACGAAACAAGGGGAAGTTTACTGCTGGGGTCAAGGGAAGTGTGGAAGGTTAGGGCAAAGAATTGATATGGACATTAGCTCCCCGAAAATAGTTGATTCTCTTAGTGATATTCGTGTAAAAAAAGTTGCTTGTGGCGAGTATCATACATGTGCTTTGACGGATTCCGGTGACGTATACACGTGGGGGAAAGACTCTTGTTCAGATTTGGTTGATGAAGGGAGAATTAGAAGTCAGTGGTTAACACATAAACTTTCATTACCTGTCGAAGGTATTAGTATTTCCAGCATTGCTTGTGGCGAATGGCATACTGCAATCGTCTCTAGTTGCGGTCGGTTATTCACGTATGGAGATGGTACATTTGGAGTACTTGGACATGGGAATTATCACAGCTTCTCTAGTCCAAAAGAAGTTGAGTCTCTTAAGGGTCTATGTGTGAGGTCTGTTGCTTGTGGAACATGGCATACGGCAGCAATTATTGAAGTCTCTGCCGAACGCTTTAAGTACAATACTTCGACTGGTAAGCTGTTTACATGGGGTGATGCAGATAAAGGGAGGCTTGGTCATGCTGATAATGTAAACAAGCTTGTACCGACATGTGTTTCACAGCTTGTCGACTACGATTTTGTTCAAGTATCTTGTGGAAGAATGATGACTTTAGCACTTACTAACATGGGAAAAGTTTTTGCAATGGGAAGTGCAAAATATGGACAATTGGGAAATCCACATGTTAAGGACAGAGCGGTTGTGGTTGAAGGAATGCTTAAACAAGAGTATGTTAAAATGATATCTTGTGGTTCATATCACGTTGCTGTTTTGACATCTTCAGGGAGTGTCTACACGTGGGGCAAAGGTGAAAATGGAGAACTAGGGCTAGGCGATACCGAAAACCGATACACACCTTGTTTTGTTGAGGCTTTAAGAGATAGGCAGGTAGATACAATAACATGTGGACCAAGTTTCACAGTTGCAATATGTTTGCACAAACCTATTTCAATTAGTGACCAATCAAGTTGTAATGGTTGTAGGTTACCGTTTGGCTTCACAAGGAAGAAACATAACTGTTATAATTGCGGTCTTTTGTTTTGCCGCAGTTGTAGTAGCAAAAAAGTTTTGAATGCATCTCTAGCCCCGGTTAAGAGCAAGGCCTTTCGTGTTTGTGAATCGTGCTTCAATAAAAAGCAAGGAAGTAGTGAACGTTCATCTATGGACTCATCAAAGTCTCGAAATTGCAACAATCAGCAGATACAAAGGCATCATCAGAACATGATTGGTGATGTCACTGAAGATAGAGGAGAAACAAATGTGACAAATGGTCCTCTGTTGTCTCTTAGTCAAACGTGTTACCGGAAAAACATGCCTAGTGGAAGGAAGGTTTGGAAAATCCAACATGAAAGCCAACGGGATGTAGAAGATAGTTCTTCTACGTTAGGTAGTGTGATACAATGTGGACAAGGACAAGTACCATATTCAGCACAATTTAGAATCAATTGTACAGAAAATTCAGTTGTGCATGAGACAGAAACAACAAAATCCGATAAGTTGCTCATAGAAGAAATTCAGAGGCTGAGAGCTGAGGCTAAGAGACTTGAAAAGCAATGTGAGCTGAAAAATCAAGAAATACAAGAGTGTCAACAAAAAGTCGAGGAGAGTTGGTCTGTTGCCAAAGAGGAAGCTGCTAAGTGCAAAGCAGCAAAAGAGGTCATAAAAGCTTTGGCATTAAGGCTTCACACGATCTCAGGAAAAGATAATCATGGCCTAGAACAAAAGGCTGGGCTACAAGAATTTCTTCCAAATTTGGCACCTATACATACTGATATGAACAGTCCAAGAAATGCCAACACGGACAGTCTATCGAATTCCCCTATAATATTCTCTAGTGCATTAAAATCCAAATTTGGGAGAAGTATTCTTCTTAAAAAGGACAATAATCTCACTAAAGCAGAATCTCAACAAGAGAATGCATTGAAGGTTGAATGGGTTGAACAATATGAGAATGGTGTTTACATAACATTGACAAAGTCGCCGAGTGGAGAAAAAGGCCTTAAGCGTGTGAGATTTAGCCGGAAGCGATTTTCGCAGAAAGAAGCTGAAAGGTGGTGGGAAGAGAATCAAACAAAAGTGCATCATAAATATGAAATTGAAACTAGGTGA

Protein sequence

>Msa0460660

MTMEEVSLAGTLPFDRAVEQAIVSIKKGAYLLKCGNRGKPKLCPFRLSPDERNLVWCSGKQEKHLRLSGVTKIVQGEGNIRSQRQNETEKECHSFSLIYANGEHSLDLICKDKAQAATWFVGLKAVISRCQQPKAFSSLRSCKGVQSCVSSPSGILRRKKNLGLLDDASQFTKVHSVCASPTLSLSERCFSDGLSYKSDFYSSASSLSSIHGITDNSVPSSPYINPDIHSNIKTSRFEKEYKKELSSNRSIMPPASALVGNNVLKDVMIWGGGIGCLVGIVNERFVQNSIYSLVPKLLESTAMLDVQNVALGGNHAAIVTKQGEVYCWGQGKCGRLGQRIDMDISSPKIVDSLSDIRVKKVACGEYHTCALTDSGDVYTWGKDSCSDLVDEGRIRSQWLTHKLSLPVEGISISSIACGEWHTAIVSSCGRLFTYGDGTFGVLGHGNYHSFSSPKEVESLKGLCVRSVACGTWHTAAIIEVSAERFKYNTSTGKLFTWGDADKGRLGHADNVNKLVPTCVSQLVDYDFVQVSCGRMMTLALTNMGKVFAMGSAKYGQLGNPHVKDRAVVVEGMLKQEYVKMISCGSYHVAVLTSSGSVYTWGKGENGELGLGDTENRYTPCFVEALRDRQVDTITCGPSFTVAICLHKPISISDQSSCNGCRLPFGFTRKKHNCYNCGLLFCRSCSSKKVLNASLAPVKSKAFRVCESCFNKKQGSSERSSMDSSKSRNCNNQQIQRHHQNMIGDVTEDRGETNVTNGPLLSLSQTCYRKNMPSGRKVWKIQHESQRDVEDSSSTLGSVIQCGQGQVPYSAQFRINCTENSVVHETETTKSDKLLIEEIQRLRAEAKRLEKQCELKNQEIQECQQKVEESWSVAKEEAAKCKAAKEVIKALALRLHTISGKDNHGLEQKAGLQEFLPNLAPIHTDMNSPRNANTDSLSNSPIIFSSALKSKFGRSILLKKDNNLTKAESQQENALKVEWVEQYENGVYITLTKSPSGEKGLKRVRFSRKRFSQKEAERWWEENQTKVHHKYEIETR*