Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0609450 | XP_003607708.1 | 95.991 | 449 | 5 | 3 | 1 | 448 | 1 | 437 | 0.0 | 860 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0609450 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002490 | Msa0609450 | 0.808150 | 3.567413e-50 | -8.615850e-47 |
| Msa0005050 | Msa0609450 | 0.812062 | 5.121730e-51 | -8.615850e-47 |
| Msa0016670 | Msa0609450 | 0.872697 | 2.606716e-67 | -8.615850e-47 |
| Msa0021810 | Msa0609450 | 0.806236 | 9.071724e-50 | -8.615850e-47 |
| Msa0032370 | Msa0609450 | 0.815978 | 7.006611e-52 | -8.615850e-47 |
| Msa0032840 | Msa0609450 | -0.835291 | 1.828161e-56 | -8.615850e-47 |
| Msa0036430 | Msa0609450 | 0.835152 | 1.981930e-56 | -8.615850e-47 |
| Msa0043670 | Msa0609450 | -0.809135 | 2.197547e-50 | -8.615850e-47 |
| Msa0044020 | Msa0609450 | 0.844025 | 9.757239e-59 | -8.615850e-47 |
| Msa0046750 | Msa0609450 | 0.812843 | 3.457036e-51 | -8.615850e-47 |
| Msa0052610 | Msa0609450 | 0.804565 | 2.032042e-49 | -8.615850e-47 |
| Msa0053110 | Msa0609450 | 0.821789 | 3.349204e-53 | -8.615850e-47 |
| Msa0057710 | Msa0609450 | 0.801827 | 7.493401e-49 | -8.615850e-47 |
| Msa0072810 | Msa0609450 | 0.833881 | 4.132858e-56 | -8.615850e-47 |
| Msa0073670 | Msa0609450 | 0.818262 | 2.148348e-52 | -8.615850e-47 |
| Msa0074320 | Msa0609450 | 0.820178 | 7.867215e-53 | -8.615850e-47 |
| Msa0076310 | Msa0609450 | 0.803854 | 2.857630e-49 | -8.615850e-47 |
| Msa0081360 | Msa0609450 | 0.817257 | 3.622292e-52 | -8.615850e-47 |
| Msa0081480 | Msa0609450 | 0.810091 | 1.369121e-50 | -8.615850e-47 |
| Msa0084500 | Msa0609450 | 0.804575 | 2.022380e-49 | -8.615850e-47 |
| Msa0090590 | Msa0609450 | 0.822410 | 2.405101e-53 | -8.615850e-47 |
| Msa0092690 | Msa0609450 | -0.800193 | 1.616240e-48 | -8.615850e-47 |
| Msa0092740 | Msa0609450 | -0.817861 | 2.647186e-52 | -8.615850e-47 |
| Msa0094120 | Msa0609450 | 0.803631 | 3.178989e-49 | -8.615850e-47 |
| Msa0098440 | Msa0609450 | 0.801782 | 7.655241e-49 | -8.615850e-47 |
| Msa0103000 | Msa0609450 | 0.834568 | 2.780085e-56 | -8.615850e-47 |
| Msa0110360 | Msa0609450 | 0.841298 | 5.173891e-58 | -8.615850e-47 |
| Msa0110970 | Msa0609450 | 0.843769 | 1.143121e-58 | -8.615850e-47 |
| Msa0114540 | Msa0609450 | -0.823389 | 1.421934e-53 | -8.615850e-47 |
| Msa0115160 | Msa0609450 | 0.848168 | 7.277430e-60 | -8.615850e-47 |
| Msa0118570 | Msa0609450 | 0.818212 | 2.205351e-52 | -8.615850e-47 |
| Msa0120330 | Msa0609450 | 0.816004 | 6.913174e-52 | -8.615850e-47 |
| Msa0609450 | Msa0618040 | 0.839674 | 1.375588e-57 | -8.615850e-47 |
| Msa0609450 | Msa0620990 | 0.841191 | 5.519993e-58 | -8.615850e-47 |
| Msa0609450 | Msa0624510 | 0.814385 | 1.582386e-51 | -8.615850e-47 |
| Msa0609450 | Msa0647380 | 0.816030 | 6.821726e-52 | -8.615850e-47 |
| Msa0609450 | Msa0650090 | 0.940369 | 2.626465e-100 | -8.615850e-47 |
| Msa0609450 | Msa0663300 | 0.804562 | 2.035585e-49 | -8.615850e-47 |
| Msa0609450 | Msa0677290 | 0.842358 | 2.715289e-58 | -8.615850e-47 |
| Msa0609450 | Msa0692080 | 0.936093 | 3.011916e-97 | -8.615850e-47 |
| Msa0609450 | Msa0701280 | 0.831809 | 1.352415e-55 | -8.615850e-47 |
| Msa0609450 | Msa0702340 | 0.826658 | 2.404433e-54 | -8.615850e-47 |
| Msa0609450 | Msa0702590 | 0.828464 | 8.861381e-55 | -8.615850e-47 |
| Msa0609450 | Msa0702660 | 0.828479 | 8.787236e-55 | -8.615850e-47 |
| Msa0609450 | Msa0703230 | 0.830697 | 2.537196e-55 | -8.615850e-47 |
| Msa0609450 | Msa0738040 | 0.803939 | 2.743844e-49 | -8.615850e-47 |
| Msa0609450 | Msa0747780 | 0.819695 | 1.014668e-52 | -8.615850e-47 |
| Msa0609450 | Msa0760380 | 0.821721 | 3.472626e-53 | -8.615850e-47 |
| Msa0609450 | Msa0778320 | 0.817917 | 2.571920e-52 | -8.615850e-47 |
| Msa0609450 | Msa0785210 | 0.805974 | 1.029895e-49 | -8.615850e-47 |
| Msa0609450 | Msa0787750 | 0.805977 | 1.028611e-49 | -8.615850e-47 |
| Msa0609450 | Msa0788770 | 0.830128 | 3.496279e-55 | -8.615850e-47 |
| Msa0609450 | Msa0790610 | 0.801923 | 7.160887e-49 | -8.615850e-47 |
| Msa0609450 | Msa0793720 | 0.800109 | 1.681392e-48 | -8.615850e-47 |
| Msa0609450 | Msa0813740 | 0.802787 | 4.753947e-49 | -8.615850e-47 |
| Msa0609450 | Msa0822990 | 0.807113 | 5.924534e-50 | -8.615850e-47 |
| Msa0609450 | Msa0824640 | 0.818759 | 1.657290e-52 | -8.615850e-47 |
| Msa0609450 | Msa0850960 | 0.815576 | 8.612487e-52 | -8.615850e-47 |
| Msa0609450 | Msa0856050 | 0.832434 | 9.472546e-56 | -8.615850e-47 |
| Msa0609450 | Msa0863240 | 0.803246 | 3.820185e-49 | -8.615850e-47 |
| Msa0609450 | Msa0864010 | 0.835814 | 1.347822e-56 | -8.615850e-47 |
| Msa0609450 | Msa0872310 | 0.818107 | 2.328712e-52 | -8.615850e-47 |
| Msa0609450 | Msa0880140 | 0.800136 | 1.660319e-48 | -8.615850e-47 |
| Msa0609450 | Msa0896970 | 0.803480 | 3.416077e-49 | -8.615850e-47 |
| Msa0609450 | Msa0905550 | 0.815146 | 1.073706e-51 | -8.615850e-47 |
| Msa0609450 | Msa0930780 | 0.837871 | 4.023472e-57 | -8.615850e-47 |
| Msa0609450 | Msa0936340 | 0.804772 | 1.840205e-49 | -8.615850e-47 |
| Msa0609450 | Msa0937550 | 0.820391 | 7.032941e-53 | -8.615850e-47 |
| Msa0609450 | Msa0965070 | 0.807020 | 6.197747e-50 | -8.615850e-47 |
| Msa0609450 | Msa1003030 | 0.800582 | 1.347207e-48 | -8.615850e-47 |
| Msa0609450 | Msa1010730 | 0.811229 | 7.771757e-51 | -8.615850e-47 |
| Msa0609450 | Msa1012700 | 0.841928 | 3.527947e-58 | -8.615850e-47 |
| Msa0609450 | Msa1012810 | 0.861474 | 1.000354e-63 | -8.615850e-47 |
| Msa0609450 | Msa1018790 | 0.839193 | 1.834251e-57 | -8.615850e-47 |
| Msa0609450 | Msa1019260 | 0.800073 | 1.710390e-48 | -8.615850e-47 |
| Msa0609450 | Msa1037920 | 0.815945 | 7.128402e-52 | -8.615850e-47 |
| Msa0609450 | Msa1040830 | 0.819282 | 1.260563e-52 | -8.615850e-47 |
| Msa0609450 | Msa1041530 | 0.816212 | 6.211712e-52 | -8.615850e-47 |
| Msa0609450 | Msa1054240 | 0.833739 | 4.484466e-56 | -8.615850e-47 |
| Msa0609450 | Msa1066490 | 0.811877 | 5.619364e-51 | -8.615850e-47 |
| Msa0609450 | Msa1082700 | 0.846863 | 1.662086e-59 | -8.615850e-47 |
| Msa0609450 | Msa1094420 | 0.874633 | 5.797112e-68 | -8.615850e-47 |
| Msa0609450 | Msa1097640 | 0.824665 | 7.137059e-54 | -8.615850e-47 |
| Msa0609450 | Msa1115770 | 0.802733 | 4.877911e-49 | -8.615850e-47 |
| Msa0609450 | Msa1126510 | 0.824826 | 6.538128e-54 | -8.615850e-47 |
| Msa0609450 | Msa1126770 | 0.809167 | 2.162727e-50 | -8.615850e-47 |
| Msa0609450 | Msa1127140 | 0.810127 | 1.345396e-50 | -8.615850e-47 |
| Msa0609450 | Msa1127890 | 0.816477 | 5.419242e-52 | -8.615850e-47 |
| Msa0609450 | Msa1129980 | 0.816191 | 6.281177e-52 | -8.615850e-47 |
| Msa0609450 | Msa1134110 | 0.821783 | 3.359775e-53 | -8.615850e-47 |
| Msa0609450 | Msa1139810 | 0.837924 | 3.899785e-57 | -8.615850e-47 |
| Msa0609450 | Msa1166400 | 0.815059 | 1.122333e-51 | -8.615850e-47 |
| Msa0609450 | Msa1166860 | 0.815182 | 1.053845e-51 | -8.615850e-47 |
| Msa0609450 | Msa1173330 | 0.840484 | 8.458797e-58 | -8.615850e-47 |
| Msa0609450 | Msa1174530 | 0.803291 | 3.739737e-49 | -8.615850e-47 |
| Msa0609450 | Msa1196100 | 0.804341 | 2.262917e-49 | -8.615850e-47 |
| Msa0609450 | Msa1200020 | 0.815571 | 8.637323e-52 | -8.615850e-47 |
| Msa0609450 | Msa1200370 | 0.801985 | 6.953974e-49 | -8.615850e-47 |
| Msa0609450 | Msa1224840 | 0.832570 | 8.766615e-56 | -8.615850e-47 |
| Msa0609450 | Msa1226620 | 0.817585 | 3.055631e-52 | -8.615850e-47 |
| Msa0609450 | Msa1228890 | 0.804408 | 2.191590e-49 | -8.615850e-47 |
| Msa0609450 | Msa1232710 | 0.844599 | 6.843547e-59 | -8.615850e-47 |
| Msa0609450 | Msa1234680 | 0.804384 | 2.216443e-49 | -8.615850e-47 |
| Msa0609450 | Msa1236100 | 0.826148 | 3.180820e-54 | -8.615850e-47 |
| Msa0609450 | Msa1249870 | 0.808587 | 2.878968e-50 | -8.615850e-47 |
| Msa0609450 | Msa1252190 | 0.853858 | 1.809106e-61 | -8.615850e-47 |
| Msa0609450 | Msa1253310 | 0.801460 | 8.909113e-49 | -8.615850e-47 |
| Msa0609450 | Msa1274060 | 0.803850 | 2.863231e-49 | -8.615850e-47 |
| Msa0609450 | Msa1274280 | 0.814848 | 1.249848e-51 | -8.615850e-47 |
| Msa0609450 | Msa1283170 | 0.804562 | 2.035706e-49 | -8.615850e-47 |
| Msa0609450 | Msa1283990 | 0.805486 | 1.304361e-49 | -8.615850e-47 |
| Msa0609450 | Msa1292830 | 0.840217 | 9.931904e-58 | -8.615850e-47 |
| Msa0609450 | Msa1307570 | 0.826752 | 2.282780e-54 | -8.615850e-47 |
| Msa0609450 | Msa1307950 | 0.818481 | 1.916853e-52 | -8.615850e-47 |
| Msa0609450 | Msa1313300 | 0.850322 | 1.829825e-60 | -8.615850e-47 |
| Msa0609450 | Msa1336120 | 0.804150 | 2.480448e-49 | -8.615850e-47 |
| Msa0609450 | Msa1340510 | 0.810464 | 1.137966e-50 | -8.615850e-47 |
| Msa0609450 | Msa1351760 | 0.804779 | 1.833840e-49 | -8.615850e-47 |
| Msa0609450 | Msa1363260 | 0.804358 | 2.245213e-49 | -8.615850e-47 |
| Msa0609450 | Msa1363330 | 0.823660 | 1.228954e-53 | -8.615850e-47 |
| Msa0609450 | Msa1364470 | -0.818243 | 2.170240e-52 | -8.615850e-47 |
| Msa0609450 | Msa1365150 | 0.825350 | 4.917674e-54 | -8.615850e-47 |
| Msa0609450 | Msa1365200 | 0.803401 | 3.548115e-49 | -8.615850e-47 |
| Msa0609450 | Msa1367880 | 0.818429 | 1.969523e-52 | -8.615850e-47 |
| Msa0609450 | Msa1373330 | 0.850438 | 1.698106e-60 | -8.615850e-47 |
| Msa0609450 | Msa1379570 | 0.804302 | 2.305695e-49 | -8.615850e-47 |
| Msa0609450 | Msa1379760 | 0.807268 | 5.491091e-50 | -8.615850e-47 |
| Msa0609450 | Msa1379990 | 0.800482 | 1.412053e-48 | -8.615850e-47 |
| Msa0609450 | Msa1386600 | 0.822878 | 1.871548e-53 | -8.615850e-47 |
| Msa0609450 | Msa1390310 | 0.829633 | 4.615809e-55 | -8.615850e-47 |
| Msa0609450 | Msa1391590 | 0.805916 | 1.059607e-49 | -8.615850e-47 |
| Msa0609450 | Msa1406040 | 0.853967 | 1.683567e-61 | -8.615850e-47 |
| Msa0609450 | Msa1420060 | 0.819716 | 1.003639e-52 | -8.615850e-47 |
| Msa0609450 | Msa1440260 | -0.820807 | 5.642445e-53 | -8.615850e-47 |
| Msa0609450 | Msa1442850 | 0.821401 | 4.118451e-53 | -8.615850e-47 |
| Msa0609450 | Msa1448690 | 0.822386 | 2.435725e-53 | -8.615850e-47 |
| Msa0609450 | Msa1459380 | 0.813513 | 2.464194e-51 | -8.615850e-47 |
| Msa0609450 | Msa1466990 | 0.875868 | 2.194600e-68 | -8.615850e-47 |
| Msa0124340 | Msa0609450 | 0.823843 | 1.113245e-53 | -8.615850e-47 |
| Msa0124990 | Msa0609450 | 0.802345 | 5.863745e-49 | -8.615850e-47 |
| Msa0127820 | Msa0609450 | 0.815915 | 7.238034e-52 | -8.615850e-47 |
| Msa0128860 | Msa0609450 | 0.800185 | 1.622737e-48 | -8.615850e-47 |
| Msa0130570 | Msa0609450 | 0.806926 | 6.488998e-50 | -8.615850e-47 |
| Msa0134180 | Msa0609450 | 0.836028 | 1.189346e-56 | -8.615850e-47 |
| Msa0137610 | Msa0609450 | -0.823178 | 1.593311e-53 | -8.615850e-47 |
| Msa0138920 | Msa0609450 | 0.803272 | 3.773575e-49 | -8.615850e-47 |
| Msa0143430 | Msa0609450 | 0.807009 | 6.231580e-50 | -8.615850e-47 |
| Msa0147560 | Msa0609450 | 0.813897 | 2.028607e-51 | -8.615850e-47 |
| Msa0167480 | Msa0609450 | 0.813776 | 2.156304e-51 | -8.615850e-47 |
| Msa0172350 | Msa0609450 | 0.818380 | 2.020325e-52 | -8.615850e-47 |
| Msa0172960 | Msa0609450 | -0.800967 | 1.124179e-48 | -8.615850e-47 |
| Msa0181610 | Msa0609450 | 0.800155 | 1.645292e-48 | -8.615850e-47 |
| Msa0183830 | Msa0609450 | 0.840764 | 7.145282e-58 | -8.615850e-47 |
| Msa0186890 | Msa0609450 | 0.831283 | 1.822583e-55 | -8.615850e-47 |
| Msa0187690 | Msa0609450 | 0.818605 | 1.796899e-52 | -8.615850e-47 |
| Msa0187930 | Msa0609450 | 0.823589 | 1.277181e-53 | -8.615850e-47 |
| Msa0188890 | Msa0609450 | 0.809537 | 1.802002e-50 | -8.615850e-47 |
| Msa0193120 | Msa0609450 | 0.803587 | 3.247287e-49 | -8.615850e-47 |
| Msa0194540 | Msa0609450 | 0.828473 | 8.815646e-55 | -8.615850e-47 |
| Msa0203030 | Msa0609450 | 0.801741 | 7.802762e-49 | -8.615850e-47 |
| Msa0219190 | Msa0609450 | 0.813650 | 2.299457e-51 | -8.615850e-47 |
| Msa0222920 | Msa0609450 | 0.805859 | 1.089162e-49 | -8.615850e-47 |
| Msa0223250 | Msa0609450 | 0.812197 | 4.785071e-51 | -8.615850e-47 |
| Msa0225180 | Msa0609450 | 0.803986 | 2.682794e-49 | -8.615850e-47 |
| Msa0225740 | Msa0609450 | 0.809250 | 2.076276e-50 | -8.615850e-47 |
| Msa0230550 | Msa0609450 | -0.834307 | 3.233004e-56 | -8.615850e-47 |
| Msa0231380 | Msa0609450 | 0.801570 | 8.459574e-49 | -8.615850e-47 |
| Msa0375750 | Msa0609450 | 0.808341 | 3.247841e-50 | -8.615850e-47 |
| Msa0402330 | Msa0609450 | 0.816957 | 4.230811e-52 | -8.615850e-47 |
| Msa0410500 | Msa0609450 | 0.816588 | 5.119184e-52 | -8.615850e-47 |
| Msa0413450 | Msa0609450 | 0.813938 | 1.986401e-51 | -8.615850e-47 |
| Msa0415580 | Msa0609450 | 0.822714 | 2.043021e-53 | -8.615850e-47 |
| Msa0419820 | Msa0609450 | 0.813130 | 2.990991e-51 | -8.615850e-47 |
| Msa0423900 | Msa0609450 | 0.804457 | 2.140266e-49 | -8.615850e-47 |
| Msa0425940 | Msa0609450 | 0.803072 | 4.151383e-49 | -8.615850e-47 |
| Msa0441130 | Msa0609450 | 0.808306 | 3.304174e-50 | -8.615850e-47 |
| Msa0460660 | Msa0609450 | 0.812902 | 3.355391e-51 | -8.615850e-47 |
| Msa0467300 | Msa0609450 | 0.810232 | 1.276643e-50 | -8.615850e-47 |
| Msa0475790 | Msa0609450 | 0.800380 | 1.481205e-48 | -8.615850e-47 |
| Msa0241780 | Msa0609450 | 0.802837 | 4.640973e-49 | -8.615850e-47 |
| Msa0241800 | Msa0609450 | 0.830520 | 2.803594e-55 | -8.615850e-47 |
| Msa0244780 | Msa0609450 | 0.823467 | 1.363895e-53 | -8.615850e-47 |
| Msa0264350 | Msa0609450 | 0.804584 | 2.013685e-49 | -8.615850e-47 |
| Msa0264570 | Msa0609450 | 0.817027 | 4.079260e-52 | -8.615850e-47 |
| Msa0267760 | Msa0609450 | 0.820735 | 5.861020e-53 | -8.615850e-47 |
| Msa0268130 | Msa0609450 | 0.826068 | 3.323063e-54 | -8.615850e-47 |
| Msa0277630 | Msa0609450 | 0.801010 | 1.101776e-48 | -8.615850e-47 |
| Msa0280900 | Msa0609450 | 0.820601 | 6.294162e-53 | -8.615850e-47 |
| Msa0292400 | Msa0609450 | 0.831965 | 1.237914e-55 | -8.615850e-47 |
| Msa0294390 | Msa0609450 | 0.832980 | 6.932959e-56 | -8.615850e-47 |
| Msa0298990 | Msa0609450 | 0.823868 | 1.098264e-53 | -8.615850e-47 |
| Msa0299890 | Msa0609450 | 0.800430 | 1.446825e-48 | -8.615850e-47 |
| Msa0302380 | Msa0609450 | 0.838891 | 2.196371e-57 | -8.615850e-47 |
| Msa0302450 | Msa0609450 | 0.806039 | 9.982024e-50 | -8.615850e-47 |
| Msa0316850 | Msa0609450 | 0.809896 | 1.508784e-50 | -8.615850e-47 |
| Msa0317310 | Msa0609450 | 0.803304 | 3.716414e-49 | -8.615850e-47 |
| Msa0339640 | Msa0609450 | 0.815335 | 9.743865e-52 | -8.615850e-47 |
| Msa0355270 | Msa0609450 | 0.823678 | 1.217327e-53 | -8.615850e-47 |
| Msa0362780 | Msa0609450 | 0.801078 | 1.066841e-48 | -8.615850e-47 |
| Msa0485990 | Msa0609450 | 0.832252 | 1.051221e-55 | -8.615850e-47 |
| Msa0508590 | Msa0609450 | 0.804928 | 1.706814e-49 | -8.615850e-47 |
| Msa0508630 | Msa0609450 | 0.808519 | 2.976137e-50 | -8.615850e-47 |
| Msa0526540 | Msa0609450 | 0.826159 | 3.161133e-54 | -8.615850e-47 |
| Msa0526710 | Msa0609450 | 0.812973 | 3.238010e-51 | -8.615850e-47 |
| Msa0541860 | Msa0609450 | 0.829163 | 6.002487e-55 | -8.615850e-47 |
| Msa0555910 | Msa0609450 | 0.952813 | 1.076194e-110 | -8.615850e-47 |
| Msa0571920 | Msa0609450 | 0.804762 | 1.848941e-49 | -8.615850e-47 |
| Msa0574890 | Msa0609450 | 0.810807 | 9.591462e-51 | -8.615850e-47 |
| Msa0576690 | Msa0609450 | 0.838685 | 2.482779e-57 | -8.615850e-47 |
| Msa0576940 | Msa0609450 | 0.836395 | 9.594762e-57 | -8.615850e-47 |
| Msa0581070 | Msa0609450 | 0.800057 | 1.722838e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0609450 | MtrunA17_Chr4g0042091 | 95.991 | 449 | 5 | 3 | 1 | 448 | 1 | 437 | 0.0 | 860 |
| Msa0609450 | MtrunA17_Chr2g0280501 | 43.387 | 431 | 185 | 10 | 21 | 447 | 1 | 376 | 1.01e-97 | 298 |
| Msa0609450 | MtrunA17_Chr1g0156521 | 39.019 | 428 | 193 | 12 | 22 | 445 | 35 | 398 | 4.39e-71 | 230 |
| Msa0609450 | MtrunA17_Chr3g0114991 | 51.240 | 242 | 104 | 7 | 211 | 445 | 214 | 448 | 1.25e-68 | 225 |
| Msa0609450 | MtrunA17_Chr3g0104431 | 44.167 | 240 | 117 | 8 | 216 | 445 | 154 | 386 | 2.97e-53 | 183 |
| Msa0609450 | MtrunA17_Chr8g0376191 | 56.213 | 169 | 70 | 3 | 279 | 447 | 1 | 165 | 8.69e-52 | 172 |
| Msa0609450 | MtrunA17_Chr2g0280521 | 57.983 | 119 | 50 | 0 | 243 | 361 | 8 | 126 | 3.52e-37 | 132 |
| Msa0609450 | MtrunA17_Chr5g0399041 | 33.929 | 224 | 95 | 7 | 238 | 447 | 105 | 289 | 4.05e-28 | 112 |
| Msa0609450 | MtrunA17_Chr4g0056461 | 34.762 | 210 | 101 | 6 | 241 | 447 | 98 | 274 | 9.71e-26 | 105 |
| Msa0609450 | MtrunA17_Chr5g0445321 | 30.412 | 194 | 121 | 5 | 254 | 445 | 1 | 182 | 1.23e-20 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0609450 | AT5G54630.1 | 69.913 | 462 | 94 | 11 | 21 | 447 | 20 | 471 | 0.0 | 587 |
| Msa0609450 | AT4G27240.1 | 64.220 | 436 | 118 | 6 | 18 | 447 | 27 | 430 | 0.0 | 526 |
| Msa0609450 | AT4G27240.2 | 62.745 | 408 | 114 | 6 | 18 | 419 | 27 | 402 | 2.03e-165 | 473 |
| Msa0609450 | AT1G11490.2 | 50.199 | 251 | 111 | 5 | 206 | 447 | 119 | 364 | 4.33e-71 | 229 |
| Msa0609450 | AT1G11490.1 | 50.199 | 251 | 111 | 5 | 206 | 447 | 119 | 364 | 4.33e-71 | 229 |
| Msa0609450 | AT1G75710.1 | 46.484 | 256 | 110 | 5 | 216 | 447 | 206 | 458 | 8.05e-60 | 202 |
| Msa0609450 | AT2G29660.1 | 41.245 | 257 | 126 | 7 | 208 | 445 | 120 | 370 | 1.10e-46 | 165 |
| Msa0609450 | AT1G62520.1 | 38.863 | 211 | 96 | 7 | 239 | 447 | 100 | 279 | 4.65e-28 | 112 |
| Msa0609450 | AT4G22560.1 | 38.140 | 215 | 87 | 9 | 235 | 445 | 89 | 261 | 3.48e-27 | 110 |
| Msa0609450 | AT4G12450.1 | 32.719 | 217 | 97 | 7 | 239 | 445 | 97 | 274 | 2.53e-21 | 94.0 |
Find 108 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATAACTTCATGAGTTAT+TGG | 0.157846 | 4_2:-56802340 | None:intergenic |
| AAAAGAAGAAGAAGCATTAA+AGG | 0.207612 | 4_2:+56802063 | Msa0609450:CDS |
| AAAATGATGGTACAAATTTA+TGG | 0.233151 | 4_2:+56804223 | Msa0609450:three_prime_UTR |
| TCAAACTGGATTTGATTCTT+TGG | 0.236240 | 4_2:+56803676 | Msa0609450:CDS |
| CTTGGCAGTTACTGAACTTT+TGG | 0.259869 | 4_2:+56803154 | Msa0609450:intron |
| GTTTGGATTCACGGTGAATT+TGG | 0.266400 | 4_2:+56803824 | Msa0609450:three_prime_UTR |
| AAAATTACAAATGTATGAAT+AGG | 0.295551 | 4_2:-56804112 | None:intergenic |
| AAATTACAAATGTATGAATA+GGG | 0.307168 | 4_2:-56804111 | None:intergenic |
| GACGCCTAGGATGTTTCTTC+TGG | 0.313874 | 4_2:-56803346 | None:intergenic |
| CAAGAAGGGATTAACACTAT+TGG | 0.345327 | 4_2:+56802400 | Msa0609450:CDS |
| AAGTCACTTGTGCTTGTTCA+TGG | 0.370609 | 4_2:+56804067 | Msa0609450:three_prime_UTR |
| GTCACAACTAGAAATAAATA+TGG | 0.370687 | 4_2:+56804191 | Msa0609450:three_prime_UTR |
| GAACAAGCAAATGAGACAAA+AGG | 0.375170 | 4_2:-56801842 | None:intergenic |
| GGGTTAAAGTAATGCATTGT+AGG | 0.377644 | 4_2:-56802511 | None:intergenic |
| ACCACAGTAGCTTGTTCTCT+TGG | 0.380190 | 4_2:+56803404 | Msa0609450:CDS |
| TCTCTTGAAACAGATTCTAA+TGG | 0.386384 | 4_2:+56802637 | Msa0609450:CDS |
| AATCTAAAAGATGTTATTCA+TGG | 0.389198 | 4_2:+56802247 | Msa0609450:CDS |
| GGTAAGTTCGACAAAATTAC+AGG | 0.400154 | 4_2:-56803908 | None:intergenic |
| GCTTGTTCTCTTGGTCTCAA+TGG | 0.401559 | 4_2:+56803413 | Msa0609450:CDS |
| AGAAGAGCACAGAATGAGTT+AGG | 0.403969 | 4_2:-56801871 | None:intergenic |
| AAAATATTTACCAGCATGCT+TGG | 0.405089 | 4_2:-56802734 | None:intergenic |
| AAGGAGTTGAAAGGTGGAAT+AGG | 0.409316 | 4_2:+56803506 | Msa0609450:CDS |
| GTTGTGTTTGTAGAATCATT+AGG | 0.411461 | 4_2:+56803465 | Msa0609450:CDS |
| TAATTGCTGGTAGGGTTCAT+AGG | 0.416479 | 4_2:+56803624 | Msa0609450:CDS |
| ATCAACGTGTTGACACGGTT+TGG | 0.417052 | 4_2:+56803807 | Msa0609450:three_prime_UTR |
| AAAGAAGAAGAAGCATTAAA+GGG | 0.417589 | 4_2:+56802064 | Msa0609450:CDS |
| ACTGGATTTGATTCTTTGGC+TGG | 0.418812 | 4_2:+56803680 | Msa0609450:CDS |
| GTTGACACGGTTTGGATTCA+CGG | 0.421092 | 4_2:+56803815 | Msa0609450:three_prime_UTR |
| TAGGGTAGTGGTAGTGGTAG+TGG | 0.422714 | 4_2:-56803979 | None:intergenic |
| CAAGAAATGGCATCTCAAAC+TGG | 0.425597 | 4_2:+56803662 | Msa0609450:CDS |
| GTGGTGTTCATTCAAGTAAT+AGG | 0.426313 | 4_2:+56802611 | Msa0609450:CDS |
| AAAAGAAAAGGTGATTTCCT+TGG | 0.433309 | 4_2:-56802559 | None:intergenic |
| GTATAAGAAGAAAACCAAAA+AGG | 0.435847 | 4_2:+56802033 | Msa0609450:CDS |
| ACTTGAAAACATTCAAGAAA+TGG | 0.445655 | 4_2:+56803649 | Msa0609450:CDS |
| GTGGTGAACAGTTTAACAAA+TGG | 0.446542 | 4_2:+56802686 | Msa0609450:CDS |
| TAATGAACCTTCACTTAGAA+AGG | 0.446634 | 4_2:+56803583 | Msa0609450:CDS |
| AGTGGTAGTGGTAGTGGTAG+TGG | 0.446743 | 4_2:-56803973 | None:intergenic |
| GGATTCACGGTGAATTTGGC+AGG | 0.452886 | 4_2:+56803828 | Msa0609450:three_prime_UTR |
| CCTCCAGGACCAGGTGTACC+AGG | 0.455632 | 4_2:-56802484 | None:intergenic |
| TCACTGCTTCCTATAGATCT+TGG | 0.456992 | 4_2:-56802307 | None:intergenic |
| GATTCTTTGGCTGGTAAAGT+AGG | 0.457682 | 4_2:+56803689 | Msa0609450:CDS |
| GTTGAAGAAGTCCTAAAAGA+AGG | 0.458747 | 4_2:-56802532 | None:intergenic |
| AGTTGCAGTCCAAGATCTAT+AGG | 0.459011 | 4_2:+56802298 | Msa0609450:CDS |
| TTCCTTCAACCATGCATGAA+AGG | 0.460121 | 4_2:-56801904 | None:intergenic |
| ACCCTTTCATGCATGGTTGA+AGG | 0.463554 | 4_2:+56801902 | Msa0609450:five_prime_UTR |
| ATGCAGAGTAATTGCTGGTA+GGG | 0.484307 | 4_2:+56803616 | Msa0609450:CDS |
| TCCTTCAACCATGCATGAAA+GGG | 0.490073 | 4_2:-56801903 | None:intergenic |
| TACCAGCATGCTTGGAGAGA+TGG | 0.491155 | 4_2:-56802726 | None:intergenic |
| GGTGGTTCTTCAACTTATGT+TGG | 0.492368 | 4_2:+56802451 | Msa0609450:CDS |
| ATGGAAGACTTGTAAAATGA+TGG | 0.496180 | 4_2:+56804210 | Msa0609450:three_prime_UTR |
| ATAGTATGCAGAGTAATTGC+TGG | 0.496317 | 4_2:+56803611 | Msa0609450:CDS |
| TGAGATAACCCTTTCATGCA+TGG | 0.497101 | 4_2:+56801895 | Msa0609450:five_prime_UTR |
| TGGTGAACAGTTTAACAAAT+GGG | 0.498621 | 4_2:+56802687 | Msa0609450:CDS |
| GAGGAAGATCAGGTTGTTCA+AGG | 0.499461 | 4_2:+56802215 | Msa0609450:CDS |
| GACCCTTCTGACAAAAGAAA+AGG | 0.499545 | 4_2:-56802571 | None:intergenic |
| ATCAATGCCTTTCTAAGTGA+AGG | 0.505745 | 4_2:-56803590 | None:intergenic |
| AACAAGCAAATGAGACAAAA+GGG | 0.510696 | 4_2:-56801841 | None:intergenic |
| AATTACAAATGTATGAATAG+GGG | 0.510948 | 4_2:-56804110 | None:intergenic |
| GATCTTGGACTGCAACTTGG+TGG | 0.516239 | 4_2:-56802292 | None:intergenic |
| TTTGGATCATGTACATCTGA+TGG | 0.518690 | 4_2:-56802142 | None:intergenic |
| CATCCTAGGCGTCTAGCTGA+TGG | 0.519157 | 4_2:+56803356 | Msa0609450:CDS |
| TGCATTGTAGGGTGTCCTCC+AGG | 0.520201 | 4_2:-56802499 | None:intergenic |
| CAAAATCCTTCAAAAGATGT+AGG | 0.522430 | 4_2:-56804031 | None:intergenic |
| CACCATCTCTCCAAGCATGC+TGG | 0.523843 | 4_2:+56802724 | Msa0609450:CDS |
| AAACAAGGAAGAAGAGCTCT+AGG | 0.526190 | 4_2:-56803749 | None:intergenic |
| TTCAAAGAAAACCACACTGT+TGG | 0.527957 | 4_2:-56802094 | None:intergenic |
| AACTAGATTTCCAACTTCCA+AGG | 0.529920 | 4_2:-56802007 | None:intergenic |
| AAATTATATGCAGGACAAGC+TGG | 0.530091 | 4_2:+56803204 | Msa0609450:CDS |
| AGGTCTTTATTCAAACATTG+AGG | 0.530157 | 4_2:+56803709 | Msa0609450:CDS |
| AGATTCATCAAGGAAAATAG+TGG | 0.534245 | 4_2:+56803181 | Msa0609450:CDS |
| GTAGGGTGTCCTCCAGGACC+AGG | 0.534778 | 4_2:-56802493 | None:intergenic |
| AGAAAAGGTGATTTCCTTGG+AGG | 0.540659 | 4_2:-56802556 | None:intergenic |
| AGACCTGGTACACCTGGTCC+TGG | 0.541493 | 4_2:+56802481 | Msa0609450:CDS |
| ATAGATCTTGGACTGCAACT+TGG | 0.545029 | 4_2:-56802295 | None:intergenic |
| CACAACATCTACAAGTGGAA+GGG | 0.551250 | 4_2:+56803535 | Msa0609450:CDS |
| GGTTAAAGTAATGCATTGTA+GGG | 0.557734 | 4_2:-56802510 | None:intergenic |
| GGACTTCTTCAACTCCTCCA+AGG | 0.558541 | 4_2:+56802542 | Msa0609450:CDS |
| TATGCAGAGTAATTGCTGGT+AGG | 0.562940 | 4_2:+56803615 | Msa0609450:CDS |
| TTTCCATCAGCTAGACGCCT+AGG | 0.564002 | 4_2:-56803359 | None:intergenic |
| ACTTTAAGACCTGGTACACC+TGG | 0.565382 | 4_2:+56802475 | Msa0609450:CDS |
| TCACAACATCTACAAGTGGA+AGG | 0.571126 | 4_2:+56803534 | Msa0609450:CDS |
| AAATAGTGGAAATTATATGC+AGG | 0.573880 | 4_2:+56803195 | Msa0609450:CDS |
| TTGAAGAAGTCCTAAAAGAA+GGG | 0.580726 | 4_2:-56802531 | None:intergenic |
| TATGTTGGTACTTTAAGACC+TGG | 0.582691 | 4_2:+56802466 | Msa0609450:CDS |
| ATTACAAATGTATGAATAGG+GGG | 0.584110 | 4_2:-56804109 | None:intergenic |
| TCTGCTAAGAAGGAGTTGAA+AGG | 0.586835 | 4_2:+56803497 | Msa0609450:CDS |
| AACTCCAGAAGAAACATCCT+AGG | 0.587019 | 4_2:+56803342 | Msa0609450:CDS |
| ATTTGAAGAGTACAGAGAGA+TGG | 0.595060 | 4_2:+56803301 | Msa0609450:CDS |
| GTTTGTAGAATCATTAGGAG+TGG | 0.602627 | 4_2:+56803470 | Msa0609450:CDS |
| ACAGGATCAACGTGTTGACA+CGG | 0.607146 | 4_2:+56803802 | Msa0609450:three_prime_UTR |
| TTGCAAATTACCACAAAACA+AGG | 0.607767 | 4_2:-56803764 | None:intergenic |
| GCTAAGAAGGAGTTGAAAGG+TGG | 0.609494 | 4_2:+56803500 | Msa0609450:CDS |
| AGCAAATGAGACAAAAGGGA+GGG | 0.610198 | 4_2:-56801837 | None:intergenic |
| TTAGAGTTTCAACAAAATCA+CGG | 0.615481 | 4_2:+56803881 | Msa0609450:three_prime_UTR |
| CTCTCTCTATTCTGCCACAG+TGG | 0.632803 | 4_2:-56803241 | None:intergenic |
| GCTAGTGGTGGTAGTAGTAG+TGG | 0.635609 | 4_2:+56802430 | Msa0609450:CDS |
| AGCAAAGAGAAAGAGAAACA+TGG | 0.658530 | 4_2:+56801969 | Msa0609450:five_prime_UTR |
| ACTATTGGTAACAATGCTAG+TGG | 0.659668 | 4_2:+56802415 | Msa0609450:CDS |
| AGTGGTGGTAGTAGTAGTGG+TGG | 0.661261 | 4_2:+56802433 | Msa0609450:CDS |
| CCTGGTACACCTGGTCCTGG+AGG | 0.665004 | 4_2:+56802484 | Msa0609450:CDS |
| TAAGTGCATGTATTGAATGA+CGG | 0.667252 | 4_2:-56803929 | None:intergenic |
| ATTGGTAACAATGCTAGTGG+TGG | 0.668024 | 4_2:+56802418 | Msa0609450:CDS |
| ACCAAGAGAACAAGCTACTG+TGG | 0.672385 | 4_2:-56803405 | None:intergenic |
| ACTGTTACTTGTCACAAATG+TGG | 0.687396 | 4_2:+56802667 | Msa0609450:CDS |
| AAGCAAATGAGACAAAAGGG+AGG | 0.691742 | 4_2:-56801838 | None:intergenic |
| AGGGTAATATGCCAACAGTG+TGG | 0.706544 | 4_2:+56802083 | Msa0609450:CDS |
| GTAAGTTCGACAAAATTACA+GGG | 0.709409 | 4_2:-56803907 | None:intergenic |
| TTAAAGTCAGAAAACCACTG+TGG | 0.819817 | 4_2:+56803227 | Msa0609450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTAAAAATTCTTCT+TGG | + | chr4_2:56802755-56802774 | Msa0609450:intron | 10.0% |
| !!! | ATTTTATTTTCAAAATATCT+AGG | + | chr4_2:56802970-56802989 | Msa0609450:intron | 10.0% |
| !!! | TATGCTATAGAATTTTTTTA+TGG | + | chr4_2:56802837-56802856 | Msa0609450:intron | 15.0% |
| !! | CAAACAATTCTAAATTAAAA+AGG | - | chr4_2:56802937-56802956 | None:intergenic | 15.0% |
| !!! | ATTTTGAAAATAAAATCTGT+TGG | - | chr4_2:56802966-56802985 | None:intergenic | 15.0% |
| !! | AAATTACAAATGTATGAATA+GGG | - | chr4_2:56804114-56804133 | None:intergenic | 15.0% |
| !! | AAAATTACAAATGTATGAAT+AGG | - | chr4_2:56804115-56804134 | None:intergenic | 15.0% |
| !! | AATCTAAAAGATGTTATTCA+TGG | + | chr4_2:56802247-56802266 | Msa0609450:CDS | 20.0% |
| !! | AAAATAACTTCATGAGTTAT+TGG | - | chr4_2:56802343-56802362 | None:intergenic | 20.0% |
| !! | AATTCTAAATTAAAAAGGCA+TGG | - | chr4_2:56802932-56802951 | None:intergenic | 20.0% |
| !! | AATTACAAATGTATGAATAG+GGG | - | chr4_2:56804113-56804132 | None:intergenic | 20.0% |
| !! | AAAATGATGGTACAAATTTA+TGG | + | chr4_2:56804223-56804242 | Msa0609450:three_prime_UTR | 20.0% |
| ! | AGATGTATAGTAAAAAACAC+GGG | - | chr4_2:56801817-56801836 | None:intergenic | 25.0% |
| ! | GAGATGTATAGTAAAAAACA+CGG | - | chr4_2:56801818-56801837 | None:intergenic | 25.0% |
| ! | GTATAAGAAGAAAACCAAAA+AGG | + | chr4_2:56802033-56802052 | Msa0609450:CDS | 25.0% |
| !! | TTCTTTTCTTTCTACCTTTT+TGG | - | chr4_2:56802050-56802069 | None:intergenic | 25.0% |
| !!! | AAAAGAAGAAGAAGCATTAA+AGG | + | chr4_2:56802063-56802082 | Msa0609450:CDS | 25.0% |
| !!! | AAAGAAGAAGAAGCATTAAA+GGG | + | chr4_2:56802064-56802083 | Msa0609450:CDS | 25.0% |
| ! | AGCACAATCTTAACAAAAAA+AGG | + | chr4_2:56802181-56802200 | Msa0609450:CDS | 25.0% |
| ! | ACAATCTTAACAAAAAAAGG+AGG | + | chr4_2:56802184-56802203 | Msa0609450:CDS | 25.0% |
| !!! | AAGTTATTTTGAGTAACTCA+AGG | + | chr4_2:56802353-56802372 | Msa0609450:CDS | 25.0% |
| !! | ATTACTTTAACCCTTCTTTT+AGG | + | chr4_2:56802521-56802540 | Msa0609450:CDS | 25.0% |
| !! | TAAAAATTCTTCTTGGCTTT+AGG | + | chr4_2:56802762-56802781 | Msa0609450:intron | 25.0% |
| ! | TTTGTGGTCAGAAAAATATT+TGG | - | chr4_2:56802792-56802811 | None:intergenic | 25.0% |
| !!! | GCTATAGAATTTTTTTATGG+TGG | + | chr4_2:56802840-56802859 | Msa0609450:intron | 25.0% |
| !!! | AAATCCACACTTTTTGAATT+TGG | + | chr4_2:56802881-56802900 | Msa0609450:intron | 25.0% |
| !!! | AATCCACACTTTTTGAATTT+GGG | + | chr4_2:56802882-56802901 | Msa0609450:intron | 25.0% |
| ! | AATACTAGGATAAAGTAGAT+TGG | - | chr4_2:56803022-56803041 | None:intergenic | 25.0% |
| ! | TGTTCAATGTTCAAAATACT+AGG | - | chr4_2:56803036-56803055 | None:intergenic | 25.0% |
| !!! | AGAAAAATTTGTTTTTCCCT+TGG | + | chr4_2:56803136-56803155 | Msa0609450:intron | 25.0% |
| !! | AAATAGTGGAAATTATATGC+AGG | + | chr4_2:56803195-56803214 | Msa0609450:CDS | 25.0% |
| !!! | CTAAAGTTTTTTGCATATTG+TGG | - | chr4_2:56803277-56803296 | None:intergenic | 25.0% |
| !!! | ATTTCTTGAATGTTTTCAAG+TGG | - | chr4_2:56803650-56803669 | None:intergenic | 25.0% |
| ! | ACTTGAAAACATTCAAGAAA+TGG | + | chr4_2:56803649-56803668 | Msa0609450:CDS | 25.0% |
| ! | TTAGAGTTTCAACAAAATCA+CGG | + | chr4_2:56803881-56803900 | Msa0609450:three_prime_UTR | 25.0% |
| ! | CCATATAAAAGCCAAAAATA+GGG | - | chr4_2:56804000-56804019 | None:intergenic | 25.0% |
| ! | TCCATATAAAAGCCAAAAAT+AGG | - | chr4_2:56804001-56804020 | None:intergenic | 25.0% |
| !!! | TATTTTTGGCTTTTATATGG+AGG | + | chr4_2:56804000-56804019 | Msa0609450:three_prime_UTR | 25.0% |
| ! | ATTACAAATGTATGAATAGG+GGG | - | chr4_2:56804112-56804131 | None:intergenic | 25.0% |
| !! | TTGTGACAATTCAAATTTTC+TGG | - | chr4_2:56804178-56804197 | None:intergenic | 25.0% |
| ! | GTCACAACTAGAAATAAATA+TGG | + | chr4_2:56804191-56804210 | Msa0609450:three_prime_UTR | 25.0% |
| AACAAGCAAATGAGACAAAA+GGG | - | chr4_2:56801844-56801863 | None:intergenic | 30.0% | |
| ATGTACATGATCCAAAAACA+AGG | + | chr4_2:56802149-56802168 | Msa0609450:CDS | 30.0% | |
| !!! | CTTAAATGCTTCCTTGTTTT+TGG | - | chr4_2:56802163-56802182 | None:intergenic | 30.0% |
| ATCTTAACAAAAAAAGGAGG+AGG | + | chr4_2:56802187-56802206 | Msa0609450:CDS | 30.0% | |
| !!! | AAAATCACTGGTTTTCAAGA+AGG | + | chr4_2:56802385-56802404 | Msa0609450:CDS | 30.0% |
| !!! | AAATCACTGGTTTTCAAGAA+GGG | + | chr4_2:56802386-56802405 | Msa0609450:CDS | 30.0% |
| GGTTAAAGTAATGCATTGTA+GGG | - | chr4_2:56802513-56802532 | None:intergenic | 30.0% | |
| TTGAAGAAGTCCTAAAAGAA+GGG | - | chr4_2:56802534-56802553 | None:intergenic | 30.0% | |
| AAAAGAAAAGGTGATTTCCT+TGG | - | chr4_2:56802562-56802581 | None:intergenic | 30.0% | |
| TCTCTTGAAACAGATTCTAA+TGG | + | chr4_2:56802637-56802656 | Msa0609450:CDS | 30.0% | |
| TGGTGAACAGTTTAACAAAT+GGG | + | chr4_2:56802687-56802706 | Msa0609450:CDS | 30.0% | |
| AAAATATTTACCAGCATGCT+TGG | - | chr4_2:56802737-56802756 | None:intergenic | 30.0% | |
| ! | TTTTCTGACCACAAACTTTT+TGG | + | chr4_2:56802797-56802816 | Msa0609450:intron | 30.0% |
| AGCATATCAGATAAAGACTA+TGG | - | chr4_2:56802823-56802842 | None:intergenic | 30.0% | |
| GGATAAAGTAGATTGGAAAA+GGG | - | chr4_2:56803015-56803034 | None:intergenic | 30.0% | |
| AGGATAAAGTAGATTGGAAA+AGG | - | chr4_2:56803016-56803035 | None:intergenic | 30.0% | |
| AGATTCATCAAGGAAAATAG+TGG | + | chr4_2:56803181-56803200 | Msa0609450:CDS | 30.0% | |
| !! | CAGAATAGAGAGAGTTTTAA+AGG | + | chr4_2:56803250-56803269 | Msa0609450:CDS | 30.0% |
| ! | CTGATGGAAATGAACTTTTA+CGG | + | chr4_2:56803372-56803391 | Msa0609450:CDS | 30.0% |
| ! | AATGAACTTTTACGGTTCTA+TGG | + | chr4_2:56803380-56803399 | Msa0609450:CDS | 30.0% |
| GTTGTGTTTGTAGAATCATT+AGG | + | chr4_2:56803465-56803484 | Msa0609450:CDS | 30.0% | |
| TAATGAACCTTCACTTAGAA+AGG | + | chr4_2:56803583-56803602 | Msa0609450:CDS | 30.0% | |
| TCAAACTGGATTTGATTCTT+TGG | + | chr4_2:56803676-56803695 | Msa0609450:CDS | 30.0% | |
| AGGTCTTTATTCAAACATTG+AGG | + | chr4_2:56803709-56803728 | Msa0609450:CDS | 30.0% | |
| TTGCAAATTACCACAAAACA+AGG | - | chr4_2:56803767-56803786 | None:intergenic | 30.0% | |
| GTAAGTTCGACAAAATTACA+GGG | - | chr4_2:56803910-56803929 | None:intergenic | 30.0% | |
| TAAGTGCATGTATTGAATGA+CGG | - | chr4_2:56803932-56803951 | None:intergenic | 30.0% | |
| !!! | CCCTATTTTTGGCTTTTATA+TGG | + | chr4_2:56803997-56804016 | Msa0609450:three_prime_UTR | 30.0% |
| CAAAATCCTTCAAAAGATGT+AGG | - | chr4_2:56804034-56804053 | None:intergenic | 30.0% | |
| ATGGAAGACTTGTAAAATGA+TGG | + | chr4_2:56804210-56804229 | Msa0609450:three_prime_UTR | 30.0% | |
| GAACAAGCAAATGAGACAAA+AGG | - | chr4_2:56801845-56801864 | None:intergenic | 35.0% | |
| AGCAAAGAGAAAGAGAAACA+TGG | + | chr4_2:56801969-56801988 | Msa0609450:five_prime_UTR | 35.0% | |
| !!! | CTTCCAAGGCTTTTTCAAAA+GGG | - | chr4_2:56801996-56802015 | None:intergenic | 35.0% |
| !!! | ACTTCCAAGGCTTTTTCAAA+AGG | - | chr4_2:56801997-56802016 | None:intergenic | 35.0% |
| TTTGAAAAAGCCTTGGAAGT+TGG | + | chr4_2:56801997-56802016 | Msa0609450:five_prime_UTR | 35.0% | |
| AACTAGATTTCCAACTTCCA+AGG | - | chr4_2:56802010-56802029 | None:intergenic | 35.0% | |
| TTCAAAGAAAACCACACTGT+TGG | - | chr4_2:56802097-56802116 | None:intergenic | 35.0% | |
| TTTGGATCATGTACATCTGA+TGG | - | chr4_2:56802145-56802164 | None:intergenic | 35.0% | |
| TTAACAAAAAAAGGAGGAGG+AGG | + | chr4_2:56802190-56802209 | Msa0609450:CDS | 35.0% | |
| AGGTGTGAGTTAAAAATCAC+TGG | + | chr4_2:56802373-56802392 | Msa0609450:CDS | 35.0% | |
| CAAGAAGGGATTAACACTAT+TGG | + | chr4_2:56802400-56802419 | Msa0609450:CDS | 35.0% | |
| ! | ACTATTGGTAACAATGCTAG+TGG | + | chr4_2:56802415-56802434 | Msa0609450:CDS | 35.0% |
| !! | TATGTTGGTACTTTAAGACC+TGG | + | chr4_2:56802466-56802485 | Msa0609450:CDS | 35.0% |
| GGGTTAAAGTAATGCATTGT+AGG | - | chr4_2:56802514-56802533 | None:intergenic | 35.0% | |
| GTTGAAGAAGTCCTAAAAGA+AGG | - | chr4_2:56802535-56802554 | None:intergenic | 35.0% | |
| ! | TCACCTTTTCTTTTGTCAGA+AGG | + | chr4_2:56802568-56802587 | Msa0609450:CDS | 35.0% |
| ! | CACCTTTTCTTTTGTCAGAA+GGG | + | chr4_2:56802569-56802588 | Msa0609450:CDS | 35.0% |
| GTGGTGTTCATTCAAGTAAT+AGG | + | chr4_2:56802611-56802630 | Msa0609450:CDS | 35.0% | |
| ! | ACTGTTACTTGTCACAAATG+TGG | + | chr4_2:56802667-56802686 | Msa0609450:CDS | 35.0% |
| GTGGTGAACAGTTTAACAAA+TGG | + | chr4_2:56802686-56802705 | Msa0609450:CDS | 35.0% | |
| AGTCCCAAATTCAAAAAGTG+TGG | - | chr4_2:56802888-56802907 | None:intergenic | 35.0% | |
| AAAAGTTCAGTAACTGCCAA+GGG | - | chr4_2:56803155-56803174 | None:intergenic | 35.0% | |
| !! | TTTTGGAAGGAGATTCATCA+AGG | + | chr4_2:56803171-56803190 | Msa0609450:CDS | 35.0% |
| AAATTATATGCAGGACAAGC+TGG | + | chr4_2:56803204-56803223 | Msa0609450:CDS | 35.0% | |
| TTAAAGTCAGAAAACCACTG+TGG | + | chr4_2:56803227-56803246 | Msa0609450:CDS | 35.0% | |
| ! | ATTTGAAGAGTACAGAGAGA+TGG | + | chr4_2:56803301-56803320 | Msa0609450:CDS | 35.0% |
| GTTTGTAGAATCATTAGGAG+TGG | + | chr4_2:56803470-56803489 | Msa0609450:CDS | 35.0% | |
| ! | GTTTTCACAACATCTACAAG+TGG | + | chr4_2:56803530-56803549 | Msa0609450:CDS | 35.0% |
| ATCAATGCCTTTCTAAGTGA+AGG | - | chr4_2:56803593-56803612 | None:intergenic | 35.0% | |
| ATAGTATGCAGAGTAATTGC+TGG | + | chr4_2:56803611-56803630 | Msa0609450:CDS | 35.0% | |
| CAAATCATGAACCCAAAAAC+AGG | + | chr4_2:56803784-56803803 | Msa0609450:exon | 35.0% | |
| !! | AACACGTTGATCCTGTTTTT+GGG | - | chr4_2:56803798-56803817 | None:intergenic | 35.0% |
| GGTAAGTTCGACAAAATTAC+AGG | - | chr4_2:56803911-56803930 | None:intergenic | 35.0% | |
| AAAAGCCAAAAATAGGGTAG+TGG | - | chr4_2:56803994-56804013 | None:intergenic | 35.0% | |
| !!! | GCTTTTATATGGAGGTACTA+TGG | + | chr4_2:56804008-56804027 | Msa0609450:three_prime_UTR | 35.0% |
| AGCAAATGAGACAAAAGGGA+GGG | - | chr4_2:56801840-56801859 | None:intergenic | 40.0% | |
| AAGCAAATGAGACAAAAGGG+AGG | - | chr4_2:56801841-56801860 | None:intergenic | 40.0% | |
| ! | AGAAGAGCACAGAATGAGTT+AGG | - | chr4_2:56801874-56801893 | None:intergenic | 40.0% |
| TGAGATAACCCTTTCATGCA+TGG | + | chr4_2:56801895-56801914 | Msa0609450:five_prime_UTR | 40.0% | |
| TCCTTCAACCATGCATGAAA+GGG | - | chr4_2:56801906-56801925 | None:intergenic | 40.0% | |
| TTCCTTCAACCATGCATGAA+AGG | - | chr4_2:56801907-56801926 | None:intergenic | 40.0% | |
| ATAGATCTTGGACTGCAACT+TGG | - | chr4_2:56802298-56802317 | None:intergenic | 40.0% | |
| AGTTGCAGTCCAAGATCTAT+AGG | + | chr4_2:56802298-56802317 | Msa0609450:CDS | 40.0% | |
| TCACTGCTTCCTATAGATCT+TGG | - | chr4_2:56802310-56802329 | None:intergenic | 40.0% | |
| ! | ATTGGTAACAATGCTAGTGG+TGG | + | chr4_2:56802418-56802437 | Msa0609450:CDS | 40.0% |
| GGTGGTTCTTCAACTTATGT+TGG | + | chr4_2:56802451-56802470 | Msa0609450:CDS | 40.0% | |
| AGAAAAGGTGATTTCCTTGG+AGG | - | chr4_2:56802559-56802578 | None:intergenic | 40.0% | |
| GACCCTTCTGACAAAAGAAA+AGG | - | chr4_2:56802574-56802593 | None:intergenic | 40.0% | |
| ! | CTTTTGTCAGAAGGGTCTAA+TGG | + | chr4_2:56802577-56802596 | Msa0609450:CDS | 40.0% |
| ! | GAAGGGTCTAATGGTTTTCA+TGG | + | chr4_2:56802586-56802605 | Msa0609450:CDS | 40.0% |
| ! | TCTAATGGTTTTCATGGTGG+TGG | + | chr4_2:56802592-56802611 | Msa0609450:CDS | 40.0% |
| GACTATGGCCAAAAAGTTTG+TGG | - | chr4_2:56802808-56802827 | None:intergenic | 40.0% | |
| CAAAAGTTCAGTAACTGCCA+AGG | - | chr4_2:56803156-56803175 | None:intergenic | 40.0% | |
| ! | CTTGGCAGTTACTGAACTTT+TGG | + | chr4_2:56803154-56803173 | Msa0609450:intron | 40.0% |
| ! | GCAGTTACTGAACTTTTGGA+AGG | + | chr4_2:56803158-56803177 | Msa0609450:intron | 40.0% |
| AACTCCAGAAGAAACATCCT+AGG | + | chr4_2:56803342-56803361 | Msa0609450:CDS | 40.0% | |
| ! | GAGTGGTTTTTCTGCTAAGA+AGG | + | chr4_2:56803487-56803506 | Msa0609450:CDS | 40.0% |
| TCTGCTAAGAAGGAGTTGAA+AGG | + | chr4_2:56803497-56803516 | Msa0609450:CDS | 40.0% | |
| AAGGAGTTGAAAGGTGGAAT+AGG | + | chr4_2:56803506-56803525 | Msa0609450:CDS | 40.0% | |
| TCACAACATCTACAAGTGGA+AGG | + | chr4_2:56803534-56803553 | Msa0609450:CDS | 40.0% | |
| CACAACATCTACAAGTGGAA+GGG | + | chr4_2:56803535-56803554 | Msa0609450:CDS | 40.0% | |
| TATGCAGAGTAATTGCTGGT+AGG | + | chr4_2:56803615-56803634 | Msa0609450:CDS | 40.0% | |
| ATGCAGAGTAATTGCTGGTA+GGG | + | chr4_2:56803616-56803635 | Msa0609450:CDS | 40.0% | |
| TAATTGCTGGTAGGGTTCAT+AGG | + | chr4_2:56803624-56803643 | Msa0609450:CDS | 40.0% | |
| CAAGAAATGGCATCTCAAAC+TGG | + | chr4_2:56803662-56803681 | Msa0609450:CDS | 40.0% | |
| ACTGGATTTGATTCTTTGGC+TGG | + | chr4_2:56803680-56803699 | Msa0609450:CDS | 40.0% | |
| GATTCTTTGGCTGGTAAAGT+AGG | + | chr4_2:56803689-56803708 | Msa0609450:CDS | 40.0% | |
| AAACAAGGAAGAAGAGCTCT+AGG | - | chr4_2:56803752-56803771 | None:intergenic | 40.0% | |
| !!! | AGCTCTTCTTCCTTGTTTTG+TGG | + | chr4_2:56803754-56803773 | Msa0609450:CDS | 40.0% |
| ! | CAACACGTTGATCCTGTTTT+TGG | - | chr4_2:56803799-56803818 | None:intergenic | 40.0% |
| GTTTGGATTCACGGTGAATT+TGG | + | chr4_2:56803824-56803843 | Msa0609450:three_prime_UTR | 40.0% | |
| ! | CAAAAATAGGGTAGTGGTAG+TGG | - | chr4_2:56803988-56804007 | None:intergenic | 40.0% |
| ! | CACTACCACTACCCTATTTT+TGG | + | chr4_2:56803986-56804005 | Msa0609450:three_prime_UTR | 40.0% |
| ! | CTATGGCCTACATCTTTTGA+AGG | + | chr4_2:56804025-56804044 | Msa0609450:three_prime_UTR | 40.0% |
| AAGTCACTTGTGCTTGTTCA+TGG | + | chr4_2:56804067-56804086 | Msa0609450:three_prime_UTR | 40.0% | |
| ACCCTTTCATGCATGGTTGA+AGG | + | chr4_2:56801902-56801921 | Msa0609450:five_prime_UTR | 45.0% | |
| !! | GGACCCTTTTGAAAAAGCCT+TGG | + | chr4_2:56801990-56802009 | Msa0609450:five_prime_UTR | 45.0% |
| AGGGTAATATGCCAACAGTG+TGG | + | chr4_2:56802083-56802102 | Msa0609450:CDS | 45.0% | |
| ACAAAAAAAGGAGGAGGAGG+AGG | + | chr4_2:56802193-56802212 | Msa0609450:CDS | 45.0% | |
| ! | GAGGAAGATCAGGTTGTTCA+AGG | + | chr4_2:56802215-56802234 | Msa0609450:CDS | 45.0% |
| !! | ACTTTAAGACCTGGTACACC+TGG | + | chr4_2:56802475-56802494 | Msa0609450:CDS | 45.0% |
| ! | GGGTCTAATGGTTTTCATGG+TGG | + | chr4_2:56802589-56802608 | Msa0609450:CDS | 45.0% |
| !! | ACCACAGTAGCTTGTTCTCT+TGG | + | chr4_2:56803404-56803423 | Msa0609450:CDS | 45.0% |
| ACCAAGAGAACAAGCTACTG+TGG | - | chr4_2:56803408-56803427 | None:intergenic | 45.0% | |
| GCTTGTTCTCTTGGTCTCAA+TGG | + | chr4_2:56803413-56803432 | Msa0609450:CDS | 45.0% | |
| GCTAAGAAGGAGTTGAAAGG+TGG | + | chr4_2:56803500-56803519 | Msa0609450:CDS | 45.0% | |
| ! | ACAGGATCAACGTGTTGACA+CGG | + | chr4_2:56803802-56803821 | Msa0609450:three_prime_UTR | 45.0% |
| ! | ATCAACGTGTTGACACGGTT+TGG | + | chr4_2:56803807-56803826 | Msa0609450:three_prime_UTR | 45.0% |
| ! | GTTGACACGGTTTGGATTCA+CGG | + | chr4_2:56803815-56803834 | Msa0609450:three_prime_UTR | 45.0% |
| AAAAAAGGAGGAGGAGGAGG+AGG | + | chr4_2:56802196-56802215 | Msa0609450:CDS | 50.0% | |
| GATCTTGGACTGCAACTTGG+TGG | - | chr4_2:56802295-56802314 | None:intergenic | 50.0% | |
| GCTAGTGGTGGTAGTAGTAG+TGG | + | chr4_2:56802430-56802449 | Msa0609450:CDS | 50.0% | |
| AGTGGTGGTAGTAGTAGTGG+TGG | + | chr4_2:56802433-56802452 | Msa0609450:CDS | 50.0% | |
| GGACTTCTTCAACTCCTCCA+AGG | + | chr4_2:56802542-56802561 | Msa0609450:CDS | 50.0% | |
| TACCAGCATGCTTGGAGAGA+TGG | - | chr4_2:56802729-56802748 | None:intergenic | 50.0% | |
| CTCTCTCTATTCTGCCACAG+TGG | - | chr4_2:56803244-56803263 | None:intergenic | 50.0% | |
| GACGCCTAGGATGTTTCTTC+TGG | - | chr4_2:56803349-56803368 | None:intergenic | 50.0% | |
| TTTCCATCAGCTAGACGCCT+AGG | - | chr4_2:56803362-56803381 | None:intergenic | 50.0% | |
| GGATTCACGGTGAATTTGGC+AGG | + | chr4_2:56803828-56803847 | Msa0609450:three_prime_UTR | 50.0% | |
| !! | AGTGGTAGTGGTAGTGGTAG+TGG | - | chr4_2:56803976-56803995 | None:intergenic | 50.0% |
| !! | TAGGGTAGTGGTAGTGGTAG+TGG | - | chr4_2:56803982-56804001 | None:intergenic | 50.0% |
| ! | TGCATTGTAGGGTGTCCTCC+AGG | - | chr4_2:56802502-56802521 | None:intergenic | 55.0% |
| CACCATCTCTCCAAGCATGC+TGG | + | chr4_2:56802724-56802743 | Msa0609450:CDS | 55.0% | |
| CATCCTAGGCGTCTAGCTGA+TGG | + | chr4_2:56803356-56803375 | Msa0609450:CDS | 55.0% | |
| GGAGGAGGAGGAGGAAGATC+AGG | + | chr4_2:56802205-56802224 | Msa0609450:CDS | 60.0% | |
| AGACCTGGTACACCTGGTCC+TGG | + | chr4_2:56802481-56802500 | Msa0609450:CDS | 60.0% | |
| CCTCCAGGACCAGGTGTACC+AGG | - | chr4_2:56802487-56802506 | None:intergenic | 65.0% | |
| CCTGGTACACCTGGTCCTGG+AGG | + | chr4_2:56802484-56802503 | Msa0609450:CDS | 65.0% | |
| ! | GTAGGGTGTCCTCCAGGACC+AGG | - | chr4_2:56802496-56802515 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 56801781 | 56804257 | 56801781 | ID=Msa0609450;Name=Msa0609450 |
| chr4_2 | mRNA | 56801781 | 56804257 | 56801781 | ID=Msa0609450-mRNA-1;Parent=Msa0609450;Name=Msa0609450-mRNA-1;_AED=0.00;_eAED=0.00;_QI=250|1|1|1|1|1|2|464|448 |
| chr4_2 | exon | 56801781 | 56802745 | 56801781 | ID=Msa0609450-mRNA-1:exon:14713;Parent=Msa0609450-mRNA-1 |
| chr4_2 | exon | 56803162 | 56804257 | 56803162 | ID=Msa0609450-mRNA-1:exon:14714;Parent=Msa0609450-mRNA-1 |
| chr4_2 | five_prime_UTR | 56801781 | 56802030 | 56801781 | ID=Msa0609450-mRNA-1:five_prime_utr;Parent=Msa0609450-mRNA-1 |
| chr4_2 | CDS | 56802031 | 56802745 | 56802031 | ID=Msa0609450-mRNA-1:cds;Parent=Msa0609450-mRNA-1 |
| chr4_2 | CDS | 56803162 | 56803793 | 56803162 | ID=Msa0609450-mRNA-1:cds;Parent=Msa0609450-mRNA-1 |
| chr4_2 | three_prime_UTR | 56803794 | 56804257 | 56803794 | ID=Msa0609450-mRNA-1:three_prime_utr;Parent=Msa0609450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
