Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0472300 | AES72641.1 | 97.288 | 295 | 6 | 1 | 1 | 295 | 1 | 293 | 0.0 | 584 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0472300 | G7J908 | 97.288 | 295 | 6 | 1 | 1 | 295 | 1 | 293 | 0.0 | 584 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0061130 | Msa0472300 | 0.815405 | 9.401308e-52 | -8.615850e-47 |
| Msa0183730 | Msa0472300 | -0.802817 | 4.686099e-49 | -8.615850e-47 |
| Msa0221180 | Msa0472300 | -0.817782 | 2.758621e-52 | -8.615850e-47 |
| Msa0369580 | Msa0472300 | 0.844218 | 8.663620e-59 | -8.615850e-47 |
| Msa0417000 | Msa0472300 | 0.813027 | 3.150118e-51 | -8.615850e-47 |
| Msa0424940 | Msa0472300 | 0.851062 | 1.133581e-60 | -8.615850e-47 |
| Msa0463820 | Msa0472300 | 0.826443 | 2.705260e-54 | -8.615850e-47 |
| Msa0472300 | Msa0688620 | -0.803090 | 4.114812e-49 | -8.615850e-47 |
| Msa0472300 | Msa0749190 | -0.804132 | 2.501567e-49 | -8.615850e-47 |
| Msa0472300 | Msa0755480 | 0.819898 | 9.120636e-53 | -8.615850e-47 |
| Msa0472300 | Msa0978980 | -0.811021 | 8.621781e-51 | -8.615850e-47 |
| Msa0472300 | Msa1071410 | -0.803772 | 2.972602e-49 | -8.615850e-47 |
| Msa0472300 | Msa1381800 | -0.802525 | 5.384304e-49 | -8.615850e-47 |
| Msa0472300 | Msa1434710 | 0.824862 | 6.411589e-54 | -8.615850e-47 |
| Msa0293070 | Msa0472300 | 0.820191 | 7.813229e-53 | -8.615850e-47 |
| Msa0300470 | Msa0472300 | -0.825520 | 4.482804e-54 | -8.615850e-47 |
| Msa0337970 | Msa0472300 | -0.819548 | 1.096475e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0472300 | MtrunA17_Chr3g0127961 | 95.563 | 293 | 11 | 1 | 1 | 293 | 1 | 291 | 0.0 | 571 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0472300 | AT5G24460.1 | 55.949 | 311 | 102 | 9 | 2 | 294 | 6 | 299 | 2.35e-95 | 283 |
Find 90 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGTGGAGGAGAGGAATTC+AGG | 0.229370 | 3_3:-74708333 | Msa0472300:CDS |
| CCTCTAACAGCAGCAGATTC+TGG | 0.246844 | 3_3:+74708441 | None:intergenic |
| CCAGAATCTGCTGCTGTTAG+AGG | 0.294356 | 3_3:-74708441 | Msa0472300:CDS |
| GGTTGTTACGGTTCGGGTTG+TGG | 0.301094 | 3_3:-74708568 | Msa0472300:CDS |
| TGCTGCTGTTAGAGGGATTA+AGG | 0.305461 | 3_3:-74708433 | Msa0472300:CDS |
| CGCCACGTGGGGTGTTAAAC+CGG | 0.312074 | 3_3:-74708679 | Msa0472300:CDS |
| GTTGTTACGGTTCGGGTTGT+GGG | 0.317057 | 3_3:-74708567 | Msa0472300:CDS |
| CGTTCAGGTTGTTACGGTTC+GGG | 0.323431 | 3_3:-74708574 | Msa0472300:CDS |
| ACCTCCTGTTCGAACCGTTC+AGG | 0.336327 | 3_3:-74708589 | Msa0472300:CDS |
| CCGTTCAGGTTGTTACGGTT+CGG | 0.359505 | 3_3:-74708575 | Msa0472300:CDS |
| TTGCGACGGTTATTTCTGTT+AGG | 0.364535 | 3_3:+74708762 | None:intergenic |
| GTTATTTCTGTTAGGGTTTG+AGG | 0.370357 | 3_3:+74708770 | None:intergenic |
| TCTCTGGCTTGAACTTTCTC+AGG | 0.375795 | 3_3:-74708637 | Msa0472300:CDS |
| TTATGAACGTTCTTAGTTCC+CGG | 0.375830 | 3_3:+74708660 | None:intergenic |
| AGCTTGGGTCTGTGATTAAC+GGG | 0.384878 | 3_3:-74708407 | Msa0472300:CDS |
| GGGTCTTATCCTGGTTTACC+TGG | 0.403587 | 3_3:-74708312 | Msa0472300:CDS |
| ACTCTCATCTCATACGAATT+CGG | 0.415365 | 3_3:+74708351 | None:intergenic |
| AAAGGACAGTTTGTTGTTGT+GGG | 0.416143 | 3_3:+74708882 | None:intergenic |
| AGTAAAAGATCTGGTAAGGA+AGG | 0.423707 | 3_3:+74708957 | None:intergenic |
| ACAACCTGAACGGTTCGAAC+AGG | 0.440068 | 3_3:+74708585 | None:intergenic |
| GAGTGGAGGAGAGGAATTCA+GGG | 0.441498 | 3_3:-74708332 | Msa0472300:CDS |
| AATCCTTGTGGAATCGCATC+AGG | 0.445603 | 3_3:-74708532 | Msa0472300:CDS |
| GGAGAGGGGTAGGCCGTTGT+CGG | 0.448380 | 3_3:-74708487 | Msa0472300:CDS |
| GAGCTTGGGTCTGTGATTAA+CGG | 0.452338 | 3_3:-74708408 | Msa0472300:CDS |
| CTAAGAACGTTCATAATCTC+TGG | 0.452904 | 3_3:-74708653 | Msa0472300:CDS |
| GCAGATTCTGGATCCTCATT+CGG | 0.453414 | 3_3:+74708453 | None:intergenic |
| TGCGACGGTTATTTCTGTTA+GGG | 0.460191 | 3_3:+74708763 | None:intergenic |
| TTGAGATTGAGATTTGTTAG+TGG | 0.463013 | 3_3:+74708984 | None:intergenic |
| AGGAATTCAGGGTCTTATCC+TGG | 0.469785 | 3_3:-74708321 | Msa0472300:CDS |
| AGGACAGTTTGTTGTTGTGG+GGG | 0.472828 | 3_3:+74708884 | None:intergenic |
| ATCATACTCATCCACCTCAT+AGG | 0.482836 | 3_3:+74708227 | None:intergenic |
| GAAAGGACAGTTTGTTGTTG+TGG | 0.483133 | 3_3:+74708881 | None:intergenic |
| GTTCGGGTTGTGGGGAAAGA+TGG | 0.484452 | 3_3:-74708558 | Msa0472300:CDS |
| CGCCGCAATCTCTCTCTGAA+TGG | 0.485327 | 3_3:-74708731 | Msa0472300:CDS |
| AGAGGGATTAAGGAAGAGCT+TGG | 0.490718 | 3_3:-74708423 | Msa0472300:CDS |
| TCGAACCGTTCAGGTTGTTA+CGG | 0.497469 | 3_3:-74708580 | Msa0472300:CDS |
| GATGGAAAAGTGAGGGAGAG+GGG | 0.500090 | 3_3:-74708501 | Msa0472300:CDS |
| CTGATGGAAAAGTGAGGGAG+AGG | 0.501444 | 3_3:-74708503 | Msa0472300:CDS |
| ATGTGCAACTTTCTTATCAT+CGG | 0.501797 | 3_3:+74708200 | None:intergenic |
| TTGTTAGTGGTTGTAACGGT+GGG | 0.515364 | 3_3:+74708997 | None:intergenic |
| AGTGCAGTTAGTAAAAGATC+TGG | 0.520470 | 3_3:+74708948 | None:intergenic |
| GGCTTCATCTTCTCCGACAA+CGG | 0.523703 | 3_3:+74708474 | None:intergenic |
| GAGGGATTAAGGAAGAGCTT+GGG | 0.532159 | 3_3:-74708422 | Msa0472300:CDS |
| GAAAAGTGAGGGAGAGGGGT+AGG | 0.532588 | 3_3:-74708497 | Msa0472300:CDS |
| AAGGACAGTTTGTTGTTGTG+GGG | 0.546084 | 3_3:+74708883 | None:intergenic |
| ATGAGATGAGAGTGGAGGAG+AGG | 0.547545 | 3_3:-74708341 | Msa0472300:CDS |
| AGTTAGTAAAAGATCTGGTA+AGG | 0.548851 | 3_3:+74708953 | None:intergenic |
| TTTGTTAGTGGTTGTAACGG+TGG | 0.554951 | 3_3:+74708996 | None:intergenic |
| TGATGGAAAAGTGAGGGAGA+GGG | 0.557496 | 3_3:-74708502 | Msa0472300:CDS |
| TTCAGATTCCTTCGCCACGT+GGG | 0.557872 | 3_3:-74708691 | Msa0472300:CDS |
| GCCACGTGGGGTGTTAAACC+GGG | 0.559559 | 3_3:-74708678 | Msa0472300:CDS |
| CAGAATCTGCTGCTGTTAGA+GGG | 0.559723 | 3_3:-74708440 | Msa0472300:CDS |
| TTGTTACGGTTCGGGTTGTG+GGG | 0.561686 | 3_3:-74708566 | Msa0472300:CDS |
| CTTCAGATTCCTTCGCCACG+TGG | 0.561700 | 3_3:-74708692 | Msa0472300:CDS |
| TCGCATCAGGAATTGTCTGA+TGG | 0.568083 | 3_3:-74708519 | Msa0472300:CDS |
| GGAGGTGAAGAGAAAGCAAA+CGG | 0.575014 | 3_3:+74708923 | None:intergenic |
| TTTAACACCCCACGTGGCGA+AGG | 0.576239 | 3_3:+74708683 | None:intergenic |
| GATATGTTGTTAGACATGGC+GGG | 0.577331 | 3_3:+74708819 | None:intergenic |
| AGCCATTCAGAGAGAGATTG+CGG | 0.577556 | 3_3:+74708729 | None:intergenic |
| ACCTGAACGGTTCGAACAGG+AGG | 0.581834 | 3_3:+74708588 | None:intergenic |
| TGATAAGAAAGTTGCACATG+AGG | 0.585972 | 3_3:-74708196 | Msa0472300:CDS |
| ATATGTTGTTAGACATGGCG+GGG | 0.587205 | 3_3:+74708820 | None:intergenic |
| TTTAGAGGGAAAGAGAGGAA+AGG | 0.589144 | 3_3:+74708864 | None:intergenic |
| TCAGATTCCTTCGCCACGTG+GGG | 0.592708 | 3_3:-74708690 | Msa0472300:CDS |
| TACAGTGGAGGGTTTGCCAG+TGG | 0.593941 | 3_3:-74708262 | Msa0472300:CDS |
| GAAAGATGGTAAAATCCTTG+TGG | 0.594600 | 3_3:-74708544 | Msa0472300:CDS |
| CTCTGGCTTGAACTTTCTCA+GGG | 0.599215 | 3_3:-74708636 | Msa0472300:CDS |
| GGAGAAGATGAAGCCGAATG+AGG | 0.599580 | 3_3:-74708466 | Msa0472300:CDS |
| ACAGTGGAGGGTTTGCCAGT+GGG | 0.601407 | 3_3:-74708261 | Msa0472300:CDS |
| ATATAACAACCAGGTAAACC+AGG | 0.604147 | 3_3:+74708303 | None:intergenic |
| GTAAAAGATCTGGTAAGGAA+GGG | 0.605594 | 3_3:+74708958 | None:intergenic |
| AGATTTGTTAGTGGTTGTAA+CGG | 0.607019 | 3_3:+74708993 | None:intergenic |
| TGTTAGTGGTTGTAACGGTG+GGG | 0.608791 | 3_3:+74708998 | None:intergenic |
| ATTCCTGATGCGATTCCACA+AGG | 0.611132 | 3_3:+74708529 | None:intergenic |
| ATTGTCTGATGGAAAAGTGA+GGG | 0.614443 | 3_3:-74708508 | Msa0472300:CDS |
| GCGGCGATGCGAAATTGCGA+CGG | 0.630824 | 3_3:+74708748 | None:intergenic |
| GGTAGATATGTTGTTAGACA+TGG | 0.631652 | 3_3:+74708815 | None:intergenic |
| GGTGTTGTGAGATCTTGAGG+AGG | 0.632594 | 3_3:+74708905 | None:intergenic |
| AGATATGTTGTTAGACATGG+CGG | 0.633253 | 3_3:+74708818 | None:intergenic |
| AATTGTCTGATGGAAAAGTG+AGG | 0.656857 | 3_3:-74708509 | Msa0472300:CDS |
| AGGTTCAGAATCATCAAGCG+AGG | 0.657763 | 3_3:+74708608 | None:intergenic |
| CCGAACCGTAACAACCTGAA+CGG | 0.668287 | 3_3:+74708575 | None:intergenic |
| TTCGTATGAGATGAGAGTGG+AGG | 0.674678 | 3_3:-74708346 | Msa0472300:CDS |
| TGAAGATGATGATAATGATG+AGG | 0.678913 | 3_3:+74708794 | None:intergenic |
| ATATGCAAAATATAACAACC+AGG | 0.686572 | 3_3:+74708294 | None:intergenic |
| TCCCGGTTTAACACCCCACG+TGG | 0.692416 | 3_3:+74708677 | None:intergenic |
| GAATTCGTATGAGATGAGAG+TGG | 0.699092 | 3_3:-74708349 | Msa0472300:CDS |
| CACGTGGCGAAGGAATCTGA+AGG | 0.726526 | 3_3:+74708693 | None:intergenic |
| GCTTGGGTCTGTGATTAACG+GGG | 0.744662 | 3_3:-74708406 | Msa0472300:CDS |
| AAGGAATCTGAAGGTAAACG+AGG | 0.750658 | 3_3:+74708702 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCTGTTAAGAAACATTTT+TGG | - | chr3_3:74708969-74708988 | Msa0472300:CDS | 20.0% |
| !!! | TTAAGAAACATTTTTGGAAA+TGG | - | chr3_3:74708975-74708994 | Msa0472300:CDS | 20.0% |
| !!! | TAAGAAACATTTTTGGAAAT+GGG | - | chr3_3:74708976-74708995 | Msa0472300:CDS | 20.0% |
| !!! | TTTCTGTTAAGAAACATTTT+TGG | - | chr3_3:74708969-74708988 | Msa0472300:CDS | 20.0% |
| !!! | TTAAGAAACATTTTTGGAAA+TGG | - | chr3_3:74708975-74708994 | Msa0472300:CDS | 20.0% |
| !!! | TAAGAAACATTTTTGGAAAT+GGG | - | chr3_3:74708976-74708995 | Msa0472300:CDS | 20.0% |
| ! | ATATGCAAAATATAACAACC+AGG | + | chr3_3:74708848-74708867 | None:intergenic | 25.0% |
| ! | ATATGCAAAATATAACAACC+AGG | + | chr3_3:74708848-74708867 | None:intergenic | 25.0% |
| !! | AGATTTGTTAGTGGTTGTAA+CGG | + | chr3_3:74708149-74708168 | None:intergenic | 30.0% |
| !! | TTGAGATTGAGATTTGTTAG+TGG | + | chr3_3:74708158-74708177 | None:intergenic | 30.0% |
| AGTTAGTAAAAGATCTGGTA+AGG | + | chr3_3:74708189-74708208 | None:intergenic | 30.0% | |
| ! | TGAAGATGATGATAATGATG+AGG | + | chr3_3:74708348-74708367 | None:intergenic | 30.0% |
| ATGTGCAACTTTCTTATCAT+CGG | + | chr3_3:74708942-74708961 | None:intergenic | 30.0% | |
| !! | AGATTTGTTAGTGGTTGTAA+CGG | + | chr3_3:74708149-74708168 | None:intergenic | 30.0% |
| !! | TTGAGATTGAGATTTGTTAG+TGG | + | chr3_3:74708158-74708177 | None:intergenic | 30.0% |
| AGTTAGTAAAAGATCTGGTA+AGG | + | chr3_3:74708189-74708208 | None:intergenic | 30.0% | |
| ! | TGAAGATGATGATAATGATG+AGG | + | chr3_3:74708348-74708367 | None:intergenic | 30.0% |
| ATGTGCAACTTTCTTATCAT+CGG | + | chr3_3:74708942-74708961 | None:intergenic | 30.0% | |
| GTAAAAGATCTGGTAAGGAA+GGG | + | chr3_3:74708184-74708203 | None:intergenic | 35.0% | |
| AGTAAAAGATCTGGTAAGGA+AGG | + | chr3_3:74708185-74708204 | None:intergenic | 35.0% | |
| AGTGCAGTTAGTAAAAGATC+TGG | + | chr3_3:74708194-74708213 | None:intergenic | 35.0% | |
| !! | AAAGGACAGTTTGTTGTTGT+GGG | + | chr3_3:74708260-74708279 | None:intergenic | 35.0% |
| AGATATGTTGTTAGACATGG+CGG | + | chr3_3:74708324-74708343 | None:intergenic | 35.0% | |
| GGTAGATATGTTGTTAGACA+TGG | + | chr3_3:74708327-74708346 | None:intergenic | 35.0% | |
| !! | GTTATTTCTGTTAGGGTTTG+AGG | + | chr3_3:74708372-74708391 | None:intergenic | 35.0% |
| TTATGAACGTTCTTAGTTCC+CGG | + | chr3_3:74708482-74708501 | None:intergenic | 35.0% | |
| CTAAGAACGTTCATAATCTC+TGG | - | chr3_3:74708486-74708505 | Msa0472300:CDS | 35.0% | |
| GAAAGATGGTAAAATCCTTG+TGG | - | chr3_3:74708595-74708614 | Msa0472300:CDS | 35.0% | |
| AATTGTCTGATGGAAAAGTG+AGG | - | chr3_3:74708630-74708649 | Msa0472300:CDS | 35.0% | |
| ATTGTCTGATGGAAAAGTGA+GGG | - | chr3_3:74708631-74708650 | Msa0472300:CDS | 35.0% | |
| ACTCTCATCTCATACGAATT+CGG | + | chr3_3:74708791-74708810 | None:intergenic | 35.0% | |
| ATATAACAACCAGGTAAACC+AGG | + | chr3_3:74708839-74708858 | None:intergenic | 35.0% | |
| !! | GCATATTTTGAATGCTACAG+TGG | - | chr3_3:74708862-74708881 | Msa0472300:CDS | 35.0% |
| !! | TATTTTGAATGCTACAGTGG+AGG | - | chr3_3:74708865-74708884 | Msa0472300:CDS | 35.0% |
| ! | ATTTTGAATGCTACAGTGGA+GGG | - | chr3_3:74708866-74708885 | Msa0472300:CDS | 35.0% |
| ! | TGATTTTTGTACCTATGAGG+TGG | - | chr3_3:74708901-74708920 | Msa0472300:CDS | 35.0% |
| TGATAAGAAAGTTGCACATG+AGG | - | chr3_3:74708943-74708962 | Msa0472300:CDS | 35.0% | |
| GTAAAAGATCTGGTAAGGAA+GGG | + | chr3_3:74708184-74708203 | None:intergenic | 35.0% | |
| AGTAAAAGATCTGGTAAGGA+AGG | + | chr3_3:74708185-74708204 | None:intergenic | 35.0% | |
| AGTGCAGTTAGTAAAAGATC+TGG | + | chr3_3:74708194-74708213 | None:intergenic | 35.0% | |
| !! | AAAGGACAGTTTGTTGTTGT+GGG | + | chr3_3:74708260-74708279 | None:intergenic | 35.0% |
| AGATATGTTGTTAGACATGG+CGG | + | chr3_3:74708324-74708343 | None:intergenic | 35.0% | |
| GGTAGATATGTTGTTAGACA+TGG | + | chr3_3:74708327-74708346 | None:intergenic | 35.0% | |
| !! | GTTATTTCTGTTAGGGTTTG+AGG | + | chr3_3:74708372-74708391 | None:intergenic | 35.0% |
| TTATGAACGTTCTTAGTTCC+CGG | + | chr3_3:74708482-74708501 | None:intergenic | 35.0% | |
| CTAAGAACGTTCATAATCTC+TGG | - | chr3_3:74708486-74708505 | Msa0472300:CDS | 35.0% | |
| GAAAGATGGTAAAATCCTTG+TGG | - | chr3_3:74708595-74708614 | Msa0472300:CDS | 35.0% | |
| AATTGTCTGATGGAAAAGTG+AGG | - | chr3_3:74708630-74708649 | Msa0472300:CDS | 35.0% | |
| ATTGTCTGATGGAAAAGTGA+GGG | - | chr3_3:74708631-74708650 | Msa0472300:CDS | 35.0% | |
| ACTCTCATCTCATACGAATT+CGG | + | chr3_3:74708791-74708810 | None:intergenic | 35.0% | |
| ATATAACAACCAGGTAAACC+AGG | + | chr3_3:74708839-74708858 | None:intergenic | 35.0% | |
| !! | GCATATTTTGAATGCTACAG+TGG | - | chr3_3:74708862-74708881 | Msa0472300:CDS | 35.0% |
| !! | TATTTTGAATGCTACAGTGG+AGG | - | chr3_3:74708865-74708884 | Msa0472300:CDS | 35.0% |
| ! | ATTTTGAATGCTACAGTGGA+GGG | - | chr3_3:74708866-74708885 | Msa0472300:CDS | 35.0% |
| ! | TGATTTTTGTACCTATGAGG+TGG | - | chr3_3:74708901-74708920 | Msa0472300:CDS | 35.0% |
| TGATAAGAAAGTTGCACATG+AGG | - | chr3_3:74708943-74708962 | Msa0472300:CDS | 35.0% | |
| TTGTTAGTGGTTGTAACGGT+GGG | + | chr3_3:74708145-74708164 | None:intergenic | 40.0% | |
| TTTGTTAGTGGTTGTAACGG+TGG | + | chr3_3:74708146-74708165 | None:intergenic | 40.0% | |
| !! | AAGGACAGTTTGTTGTTGTG+GGG | + | chr3_3:74708259-74708278 | None:intergenic | 40.0% |
| !! | GAAAGGACAGTTTGTTGTTG+TGG | + | chr3_3:74708261-74708280 | None:intergenic | 40.0% |
| TTTAGAGGGAAAGAGAGGAA+AGG | + | chr3_3:74708278-74708297 | None:intergenic | 40.0% | |
| ATATGTTGTTAGACATGGCG+GGG | + | chr3_3:74708322-74708341 | None:intergenic | 40.0% | |
| GATATGTTGTTAGACATGGC+GGG | + | chr3_3:74708323-74708342 | None:intergenic | 40.0% | |
| !! | TGCGACGGTTATTTCTGTTA+GGG | + | chr3_3:74708379-74708398 | None:intergenic | 40.0% |
| !! | TTGCGACGGTTATTTCTGTT+AGG | + | chr3_3:74708380-74708399 | None:intergenic | 40.0% |
| AAGGAATCTGAAGGTAAACG+AGG | + | chr3_3:74708440-74708459 | None:intergenic | 40.0% | |
| GAATTCGTATGAGATGAGAG+TGG | - | chr3_3:74708790-74708809 | Msa0472300:CDS | 40.0% | |
| TAGGTACAAAAATCACCCAC+TGG | + | chr3_3:74708896-74708915 | None:intergenic | 40.0% | |
| ! | GGGTGATTTTTGTACCTATG+AGG | - | chr3_3:74708898-74708917 | Msa0472300:CDS | 40.0% |
| ATCATACTCATCCACCTCAT+AGG | + | chr3_3:74708915-74708934 | None:intergenic | 40.0% | |
| TTGTTAGTGGTTGTAACGGT+GGG | + | chr3_3:74708145-74708164 | None:intergenic | 40.0% | |
| TTTGTTAGTGGTTGTAACGG+TGG | + | chr3_3:74708146-74708165 | None:intergenic | 40.0% | |
| !! | AAGGACAGTTTGTTGTTGTG+GGG | + | chr3_3:74708259-74708278 | None:intergenic | 40.0% |
| !! | GAAAGGACAGTTTGTTGTTG+TGG | + | chr3_3:74708261-74708280 | None:intergenic | 40.0% |
| TTTAGAGGGAAAGAGAGGAA+AGG | + | chr3_3:74708278-74708297 | None:intergenic | 40.0% | |
| ATATGTTGTTAGACATGGCG+GGG | + | chr3_3:74708322-74708341 | None:intergenic | 40.0% | |
| GATATGTTGTTAGACATGGC+GGG | + | chr3_3:74708323-74708342 | None:intergenic | 40.0% | |
| !! | TGCGACGGTTATTTCTGTTA+GGG | + | chr3_3:74708379-74708398 | None:intergenic | 40.0% |
| !! | TTGCGACGGTTATTTCTGTT+AGG | + | chr3_3:74708380-74708399 | None:intergenic | 40.0% |
| AAGGAATCTGAAGGTAAACG+AGG | + | chr3_3:74708440-74708459 | None:intergenic | 40.0% | |
| GAATTCGTATGAGATGAGAG+TGG | - | chr3_3:74708790-74708809 | Msa0472300:CDS | 40.0% | |
| TAGGTACAAAAATCACCCAC+TGG | + | chr3_3:74708896-74708915 | None:intergenic | 40.0% | |
| ! | GGGTGATTTTTGTACCTATG+AGG | - | chr3_3:74708898-74708917 | Msa0472300:CDS | 40.0% |
| ATCATACTCATCCACCTCAT+AGG | + | chr3_3:74708915-74708934 | None:intergenic | 40.0% | |
| TGTTAGTGGTTGTAACGGTG+GGG | + | chr3_3:74708144-74708163 | None:intergenic | 45.0% | |
| GGAGGTGAAGAGAAAGCAAA+CGG | + | chr3_3:74708219-74708238 | None:intergenic | 45.0% | |
| !! | AGGACAGTTTGTTGTTGTGG+GGG | + | chr3_3:74708258-74708277 | None:intergenic | 45.0% |
| !!! | GTGGTTTTAGAGGGAAAGAG+AGG | + | chr3_3:74708283-74708302 | None:intergenic | 45.0% |
| !!! | GGAAACGACGTGGTTTTAGA+GGG | + | chr3_3:74708292-74708311 | None:intergenic | 45.0% |
| !!! | AGGAAACGACGTGGTTTTAG+AGG | + | chr3_3:74708293-74708312 | None:intergenic | 45.0% |
| AGCCATTCAGAGAGAGATTG+CGG | + | chr3_3:74708413-74708432 | None:intergenic | 45.0% | |
| ! | TCTCTGGCTTGAACTTTCTC+AGG | - | chr3_3:74708502-74708521 | Msa0472300:CDS | 45.0% |
| ! | CTCTGGCTTGAACTTTCTCA+GGG | - | chr3_3:74708503-74708522 | Msa0472300:CDS | 45.0% |
| AGGTTCAGAATCATCAAGCG+AGG | + | chr3_3:74708534-74708553 | None:intergenic | 45.0% | |
| !! | TCGAACCGTTCAGGTTGTTA+CGG | - | chr3_3:74708559-74708578 | Msa0472300:CDS | 45.0% |
| AATCCTTGTGGAATCGCATC+AGG | - | chr3_3:74708607-74708626 | Msa0472300:CDS | 45.0% | |
| ATTCCTGATGCGATTCCACA+AGG | + | chr3_3:74708613-74708632 | None:intergenic | 45.0% | |
| TCGCATCAGGAATTGTCTGA+TGG | - | chr3_3:74708620-74708639 | Msa0472300:CDS | 45.0% | |
| TGATGGAAAAGTGAGGGAGA+GGG | - | chr3_3:74708637-74708656 | Msa0472300:CDS | 45.0% | |
| GCAGATTCTGGATCCTCATT+CGG | + | chr3_3:74708689-74708708 | None:intergenic | 45.0% | |
| CAGAATCTGCTGCTGTTAGA+GGG | - | chr3_3:74708699-74708718 | Msa0472300:CDS | 45.0% | |
| TGCTGCTGTTAGAGGGATTA+AGG | - | chr3_3:74708706-74708725 | Msa0472300:CDS | 45.0% | |
| AGAGGGATTAAGGAAGAGCT+TGG | - | chr3_3:74708716-74708735 | Msa0472300:CDS | 45.0% | |
| GAGGGATTAAGGAAGAGCTT+GGG | - | chr3_3:74708717-74708736 | Msa0472300:CDS | 45.0% | |
| GAGCTTGGGTCTGTGATTAA+CGG | - | chr3_3:74708731-74708750 | Msa0472300:CDS | 45.0% | |
| AGCTTGGGTCTGTGATTAAC+GGG | - | chr3_3:74708732-74708751 | Msa0472300:CDS | 45.0% | |
| TTCGTATGAGATGAGAGTGG+AGG | - | chr3_3:74708793-74708812 | Msa0472300:CDS | 45.0% | |
| ! | AGGAATTCAGGGTCTTATCC+TGG | - | chr3_3:74708818-74708837 | Msa0472300:CDS | 45.0% |
| TGTTAGTGGTTGTAACGGTG+GGG | + | chr3_3:74708144-74708163 | None:intergenic | 45.0% | |
| GGAGGTGAAGAGAAAGCAAA+CGG | + | chr3_3:74708219-74708238 | None:intergenic | 45.0% | |
| !! | AGGACAGTTTGTTGTTGTGG+GGG | + | chr3_3:74708258-74708277 | None:intergenic | 45.0% |
| !!! | GTGGTTTTAGAGGGAAAGAG+AGG | + | chr3_3:74708283-74708302 | None:intergenic | 45.0% |
| !!! | GGAAACGACGTGGTTTTAGA+GGG | + | chr3_3:74708292-74708311 | None:intergenic | 45.0% |
| !!! | AGGAAACGACGTGGTTTTAG+AGG | + | chr3_3:74708293-74708312 | None:intergenic | 45.0% |
| AGCCATTCAGAGAGAGATTG+CGG | + | chr3_3:74708413-74708432 | None:intergenic | 45.0% | |
| ! | TCTCTGGCTTGAACTTTCTC+AGG | - | chr3_3:74708502-74708521 | Msa0472300:CDS | 45.0% |
| ! | CTCTGGCTTGAACTTTCTCA+GGG | - | chr3_3:74708503-74708522 | Msa0472300:CDS | 45.0% |
| AGGTTCAGAATCATCAAGCG+AGG | + | chr3_3:74708534-74708553 | None:intergenic | 45.0% | |
| !! | TCGAACCGTTCAGGTTGTTA+CGG | - | chr3_3:74708559-74708578 | Msa0472300:CDS | 45.0% |
| AATCCTTGTGGAATCGCATC+AGG | - | chr3_3:74708607-74708626 | Msa0472300:CDS | 45.0% | |
| ATTCCTGATGCGATTCCACA+AGG | + | chr3_3:74708613-74708632 | None:intergenic | 45.0% | |
| TCGCATCAGGAATTGTCTGA+TGG | - | chr3_3:74708620-74708639 | Msa0472300:CDS | 45.0% | |
| TGATGGAAAAGTGAGGGAGA+GGG | - | chr3_3:74708637-74708656 | Msa0472300:CDS | 45.0% | |
| GCAGATTCTGGATCCTCATT+CGG | + | chr3_3:74708689-74708708 | None:intergenic | 45.0% | |
| CAGAATCTGCTGCTGTTAGA+GGG | - | chr3_3:74708699-74708718 | Msa0472300:CDS | 45.0% | |
| TGCTGCTGTTAGAGGGATTA+AGG | - | chr3_3:74708706-74708725 | Msa0472300:CDS | 45.0% | |
| AGAGGGATTAAGGAAGAGCT+TGG | - | chr3_3:74708716-74708735 | Msa0472300:CDS | 45.0% | |
| GAGGGATTAAGGAAGAGCTT+GGG | - | chr3_3:74708717-74708736 | Msa0472300:CDS | 45.0% | |
| GAGCTTGGGTCTGTGATTAA+CGG | - | chr3_3:74708731-74708750 | Msa0472300:CDS | 45.0% | |
| AGCTTGGGTCTGTGATTAAC+GGG | - | chr3_3:74708732-74708751 | Msa0472300:CDS | 45.0% | |
| TTCGTATGAGATGAGAGTGG+AGG | - | chr3_3:74708793-74708812 | Msa0472300:CDS | 45.0% | |
| ! | AGGAATTCAGGGTCTTATCC+TGG | - | chr3_3:74708818-74708837 | Msa0472300:CDS | 45.0% |
| ! | GGTGTTGTGAGATCTTGAGG+AGG | + | chr3_3:74708237-74708256 | None:intergenic | 50.0% |
| !! | GGGATTTTGAGGAAACGACG+TGG | + | chr3_3:74708302-74708321 | None:intergenic | 50.0% |
| !! | TAGACATGGCGGGGATTTTG+AGG | + | chr3_3:74708313-74708332 | None:intergenic | 50.0% |
| TTCAGATTCCTTCGCCACGT+GGG | - | chr3_3:74708448-74708467 | Msa0472300:CDS | 50.0% | |
| ACAACCTGAACGGTTCGAAC+AGG | + | chr3_3:74708557-74708576 | None:intergenic | 50.0% | |
| CCGAACCGTAACAACCTGAA+CGG | + | chr3_3:74708567-74708586 | None:intergenic | 50.0% | |
| !! | CCGTTCAGGTTGTTACGGTT+CGG | - | chr3_3:74708564-74708583 | Msa0472300:CDS | 50.0% |
| !! | CGTTCAGGTTGTTACGGTTC+GGG | - | chr3_3:74708565-74708584 | Msa0472300:CDS | 50.0% |
| !! | GTTGTTACGGTTCGGGTTGT+GGG | - | chr3_3:74708572-74708591 | Msa0472300:CDS | 50.0% |
| !! | TTGTTACGGTTCGGGTTGTG+GGG | - | chr3_3:74708573-74708592 | Msa0472300:CDS | 50.0% |
| CTGATGGAAAAGTGAGGGAG+AGG | - | chr3_3:74708636-74708655 | Msa0472300:CDS | 50.0% | |
| GATGGAAAAGTGAGGGAGAG+GGG | - | chr3_3:74708638-74708657 | Msa0472300:CDS | 50.0% | |
| GGCTTCATCTTCTCCGACAA+CGG | + | chr3_3:74708668-74708687 | None:intergenic | 50.0% | |
| GGAGAAGATGAAGCCGAATG+AGG | - | chr3_3:74708673-74708692 | Msa0472300:CDS | 50.0% | |
| CCTCTAACAGCAGCAGATTC+TGG | + | chr3_3:74708701-74708720 | None:intergenic | 50.0% | |
| CCAGAATCTGCTGCTGTTAG+AGG | - | chr3_3:74708698-74708717 | Msa0472300:CDS | 50.0% | |
| GCTTGGGTCTGTGATTAACG+GGG | - | chr3_3:74708733-74708752 | Msa0472300:CDS | 50.0% | |
| ATGAGATGAGAGTGGAGGAG+AGG | - | chr3_3:74708798-74708817 | Msa0472300:CDS | 50.0% | |
| AGAGTGGAGGAGAGGAATTC+AGG | - | chr3_3:74708806-74708825 | Msa0472300:CDS | 50.0% | |
| GAGTGGAGGAGAGGAATTCA+GGG | - | chr3_3:74708807-74708826 | Msa0472300:CDS | 50.0% | |
| ! | GGGTCTTATCCTGGTTTACC+TGG | - | chr3_3:74708827-74708846 | Msa0472300:CDS | 50.0% |
| ! | GGTGTTGTGAGATCTTGAGG+AGG | + | chr3_3:74708237-74708256 | None:intergenic | 50.0% |
| !! | GGGATTTTGAGGAAACGACG+TGG | + | chr3_3:74708302-74708321 | None:intergenic | 50.0% |
| !! | TAGACATGGCGGGGATTTTG+AGG | + | chr3_3:74708313-74708332 | None:intergenic | 50.0% |
| TTCAGATTCCTTCGCCACGT+GGG | - | chr3_3:74708448-74708467 | Msa0472300:CDS | 50.0% | |
| ACAACCTGAACGGTTCGAAC+AGG | + | chr3_3:74708557-74708576 | None:intergenic | 50.0% | |
| CCGAACCGTAACAACCTGAA+CGG | + | chr3_3:74708567-74708586 | None:intergenic | 50.0% | |
| !! | CCGTTCAGGTTGTTACGGTT+CGG | - | chr3_3:74708564-74708583 | Msa0472300:CDS | 50.0% |
| !! | CGTTCAGGTTGTTACGGTTC+GGG | - | chr3_3:74708565-74708584 | Msa0472300:CDS | 50.0% |
| !! | GTTGTTACGGTTCGGGTTGT+GGG | - | chr3_3:74708572-74708591 | Msa0472300:CDS | 50.0% |
| !! | TTGTTACGGTTCGGGTTGTG+GGG | - | chr3_3:74708573-74708592 | Msa0472300:CDS | 50.0% |
| CTGATGGAAAAGTGAGGGAG+AGG | - | chr3_3:74708636-74708655 | Msa0472300:CDS | 50.0% | |
| GATGGAAAAGTGAGGGAGAG+GGG | - | chr3_3:74708638-74708657 | Msa0472300:CDS | 50.0% | |
| GGCTTCATCTTCTCCGACAA+CGG | + | chr3_3:74708668-74708687 | None:intergenic | 50.0% | |
| GGAGAAGATGAAGCCGAATG+AGG | - | chr3_3:74708673-74708692 | Msa0472300:CDS | 50.0% | |
| CCTCTAACAGCAGCAGATTC+TGG | + | chr3_3:74708701-74708720 | None:intergenic | 50.0% | |
| CCAGAATCTGCTGCTGTTAG+AGG | - | chr3_3:74708698-74708717 | Msa0472300:CDS | 50.0% | |
| GCTTGGGTCTGTGATTAACG+GGG | - | chr3_3:74708733-74708752 | Msa0472300:CDS | 50.0% | |
| ATGAGATGAGAGTGGAGGAG+AGG | - | chr3_3:74708798-74708817 | Msa0472300:CDS | 50.0% | |
| AGAGTGGAGGAGAGGAATTC+AGG | - | chr3_3:74708806-74708825 | Msa0472300:CDS | 50.0% | |
| GAGTGGAGGAGAGGAATTCA+GGG | - | chr3_3:74708807-74708826 | Msa0472300:CDS | 50.0% | |
| ! | GGGTCTTATCCTGGTTTACC+TGG | - | chr3_3:74708827-74708846 | Msa0472300:CDS | 50.0% |
| !! | GGGGGTGTTGTGAGATCTTG+AGG | + | chr3_3:74708240-74708259 | None:intergenic | 55.0% |
| CGCCGCAATCTCTCTCTGAA+TGG | - | chr3_3:74708408-74708427 | Msa0472300:CDS | 55.0% | |
| CACGTGGCGAAGGAATCTGA+AGG | + | chr3_3:74708449-74708468 | None:intergenic | 55.0% | |
| CTTCAGATTCCTTCGCCACG+TGG | - | chr3_3:74708447-74708466 | Msa0472300:CDS | 55.0% | |
| TCAGATTCCTTCGCCACGTG+GGG | - | chr3_3:74708449-74708468 | Msa0472300:CDS | 55.0% | |
| TTTAACACCCCACGTGGCGA+AGG | + | chr3_3:74708459-74708478 | None:intergenic | 55.0% | |
| ACCTCCTGTTCGAACCGTTC+AGG | - | chr3_3:74708550-74708569 | Msa0472300:CDS | 55.0% | |
| ACCTGAACGGTTCGAACAGG+AGG | + | chr3_3:74708554-74708573 | None:intergenic | 55.0% | |
| !! | GGTTGTTACGGTTCGGGTTG+TGG | - | chr3_3:74708571-74708590 | Msa0472300:CDS | 55.0% |
| !! | GTTCGGGTTGTGGGGAAAGA+TGG | - | chr3_3:74708581-74708600 | Msa0472300:CDS | 55.0% |
| GAAAAGTGAGGGAGAGGGGT+AGG | - | chr3_3:74708642-74708661 | Msa0472300:CDS | 55.0% | |
| TACAGTGGAGGGTTTGCCAG+TGG | - | chr3_3:74708877-74708896 | Msa0472300:CDS | 55.0% | |
| ACAGTGGAGGGTTTGCCAGT+GGG | - | chr3_3:74708878-74708897 | Msa0472300:CDS | 55.0% | |
| !! | GGGGGTGTTGTGAGATCTTG+AGG | + | chr3_3:74708240-74708259 | None:intergenic | 55.0% |
| CGCCGCAATCTCTCTCTGAA+TGG | - | chr3_3:74708408-74708427 | Msa0472300:CDS | 55.0% | |
| CACGTGGCGAAGGAATCTGA+AGG | + | chr3_3:74708449-74708468 | None:intergenic | 55.0% | |
| CTTCAGATTCCTTCGCCACG+TGG | - | chr3_3:74708447-74708466 | Msa0472300:CDS | 55.0% | |
| TCAGATTCCTTCGCCACGTG+GGG | - | chr3_3:74708449-74708468 | Msa0472300:CDS | 55.0% | |
| TTTAACACCCCACGTGGCGA+AGG | + | chr3_3:74708459-74708478 | None:intergenic | 55.0% | |
| ACCTCCTGTTCGAACCGTTC+AGG | - | chr3_3:74708550-74708569 | Msa0472300:CDS | 55.0% | |
| ACCTGAACGGTTCGAACAGG+AGG | + | chr3_3:74708554-74708573 | None:intergenic | 55.0% | |
| !! | GGTTGTTACGGTTCGGGTTG+TGG | - | chr3_3:74708571-74708590 | Msa0472300:CDS | 55.0% |
| !! | GTTCGGGTTGTGGGGAAAGA+TGG | - | chr3_3:74708581-74708600 | Msa0472300:CDS | 55.0% |
| GAAAAGTGAGGGAGAGGGGT+AGG | - | chr3_3:74708642-74708661 | Msa0472300:CDS | 55.0% | |
| TACAGTGGAGGGTTTGCCAG+TGG | - | chr3_3:74708877-74708896 | Msa0472300:CDS | 55.0% | |
| ACAGTGGAGGGTTTGCCAGT+GGG | - | chr3_3:74708878-74708897 | Msa0472300:CDS | 55.0% | |
| GCGGCGATGCGAAATTGCGA+CGG | + | chr3_3:74708394-74708413 | None:intergenic | 60.0% | |
| ! | CGCCACGTGGGGTGTTAAAC+CGG | - | chr3_3:74708460-74708479 | Msa0472300:CDS | 60.0% |
| ! | GCCACGTGGGGTGTTAAACC+GGG | - | chr3_3:74708461-74708480 | Msa0472300:CDS | 60.0% |
| TCCCGGTTTAACACCCCACG+TGG | + | chr3_3:74708465-74708484 | None:intergenic | 60.0% | |
| GCGGCGATGCGAAATTGCGA+CGG | + | chr3_3:74708394-74708413 | None:intergenic | 60.0% | |
| ! | CGCCACGTGGGGTGTTAAAC+CGG | - | chr3_3:74708460-74708479 | Msa0472300:CDS | 60.0% |
| ! | GCCACGTGGGGTGTTAAACC+GGG | - | chr3_3:74708461-74708480 | Msa0472300:CDS | 60.0% |
| TCCCGGTTTAACACCCCACG+TGG | + | chr3_3:74708465-74708484 | None:intergenic | 60.0% | |
| GGAGAGGGGTAGGCCGTTGT+CGG | - | chr3_3:74708652-74708671 | Msa0472300:CDS | 65.0% | |
| GGAGAGGGGTAGGCCGTTGT+CGG | - | chr3_3:74708652-74708671 | Msa0472300:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 74708137 | 74709024 | 74708137 | ID=Msa0472300;Name=Msa0472300 |
| chr3_3 | mRNA | 74708137 | 74709024 | 74708137 | ID=Msa0472300-mRNA-1;Parent=Msa0472300;Name=Msa0472300-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|-1|0|1|-1|1|1|0|295 |
| chr3_3 | exon | 74708137 | 74709024 | 74708137 | ID=Msa0472300-mRNA-1:exon:19169;Parent=Msa0472300-mRNA-1 |
| chr3_3 | CDS | 74708137 | 74709024 | 74708137 | ID=Msa0472300-mRNA-1:cds;Parent=Msa0472300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
