AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0293070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0293070 MtrunA17_Chr2g0313871 87.619 105 8 1 42 141 58 162 2.21e-56 181
Msa0293070 MtrunA17_Chr2g0313861 94.231 52 3 0 1 52 1 52 4.59e-32 111
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0293070 AT1G17050.1 78.947 76 16 0 66 141 83 158 3.95e-32 118
Msa0293070 AT1G78510.1 57.143 112 43 1 30 141 41 147 5.32e-30 112
Msa0293070 AT1G78510.2 73.684 76 20 0 66 141 33 108 1.48e-28 107
Msa0293070 AT1G53530.1 53.846 52 24 0 1 52 3 54 1.41e-15 69.7

Find 54 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAACCTATTTGGTGAAAT+AGG 0.152420 2_3:-42981971 None:intergenic
GAGACCAGCTCTTGTGTTCT+TGG 0.226567 2_3:+42982548 Msa0293070:CDS
ACAACCTATTTGGTGAAATA+GGG 0.248193 2_3:-42981970 None:intergenic
ACTACTTCAAACAACCTATT+TGG 0.252967 2_3:-42981980 None:intergenic
GATTATTGCTGAACGATCTA+AGG 0.274598 2_3:-42981459 None:intergenic
TGGCAATGCTGAATCGCTTT+TGG 0.319835 2_3:+42981195 Msa0293070:five_prime_UTR
CCATGGGTTGGGAGCATACT+AGG 0.373324 2_3:-42981635 None:intergenic
CAACCCCTATTTCACCAAAT+AGG 0.381053 2_3:+42981966 Msa0293070:CDS
TAAACAAGTTAGTGCCTGTT+TGG 0.383238 2_3:-42981300 None:intergenic
TTTGGTGAAATAGGGGTTGC+TGG 0.395241 2_3:-42981962 None:intergenic
CTCTTGTGTTCTTGGTGTCA+AGG 0.410404 2_3:+42982556 Msa0293070:CDS
GCAATTAAAGACCTTGCAAA+AGG 0.452757 2_3:+42981920 Msa0293070:CDS
TCAGCTGCAGATATTAAAAC+TGG 0.453325 2_3:-42982495 None:intergenic
TCTGAAGTAGAGGTGGAAAT+CGG 0.456277 2_3:-42981329 None:intergenic
TTCCCACCGCGGAACCAAAC+AGG 0.458253 2_3:+42981286 Msa0293070:five_prime_UTR
ATCCTCTGTTTGCAGGCGTA+TGG 0.461407 2_3:+42981611 Msa0293070:intron
TTCTGTTACCTTCAATTCAC+CGG 0.462474 2_3:+42981491 Msa0293070:CDS
CGGTGGGAACGCTTAAACGC+AGG 0.467855 2_3:-42981272 None:intergenic
GAACCAAATCACCATGGGTT+GGG 0.471876 2_3:-42981646 None:intergenic
TGCCTGTTTGGTTCCGCGGT+GGG 0.480476 2_3:-42981288 None:intergenic
GGATGCTCTTGCTAGATTGT+AGG 0.480858 2_3:+42982462 Msa0293070:intron
GGTAGTTGCCGGTGAATTGA+AGG 0.489428 2_3:-42981499 None:intergenic
TGTGCGATGTAATTCATAAA+CGG 0.490853 2_3:-42981413 None:intergenic
GCATATTCACCCAGCATCCC+TGG 0.496099 2_3:-42981172 None:intergenic
CAATAATTCCTTCCTCAACC+TGG 0.505762 2_3:+42981085 None:intergenic
TCTTGTGTTCTTGGTGTCAA+GGG 0.509192 2_3:+42982557 Msa0293070:CDS
TCTTTAGTGCTGGTGGGAAG+AGG 0.511599 2_3:+42982523 Msa0293070:CDS
TGGTGAACAGAGGTAGTTGC+CGG 0.517923 2_3:-42981510 None:intergenic
AGAGATTCTTTCTGAAGTAG+AGG 0.537978 2_3:-42981339 None:intergenic
CAACCTATTTGGTGAAATAG+GGG 0.541722 2_3:-42981969 None:intergenic
GACACCAAGAACACAAGAGC+TGG 0.548114 2_3:-42982552 None:intergenic
GATTGCAGTTCTGCAACTGA+TGG 0.554551 2_3:+42981109 Msa0293070:five_prime_UTR
GTGCCTGTTTGGTTCCGCGG+TGG 0.557214 2_3:-42981289 None:intergenic
GCTGAGCAGATCTTTAGTGC+TGG 0.564731 2_3:+42982513 Msa0293070:CDS
GAACTGCAATCACCAGGTTG+AGG 0.567867 2_3:-42981097 None:intergenic
AGGGCGACCGCAGAGCTACA+TGG 0.569025 2_3:+42982576 Msa0293070:CDS
GAGCAGATCTTTAGTGCTGG+TGG 0.569958 2_3:+42982516 Msa0293070:CDS
AGAACCAAATCACCATGGGT+TGG 0.570067 2_3:-42981647 None:intergenic
GATTCTTTCTGAAGTAGAGG+TGG 0.571917 2_3:-42981336 None:intergenic
AGCAGATCTTTAGTGCTGGT+GGG 0.574274 2_3:+42982517 Msa0293070:CDS
GAGATCTGTATACTTACTCA+AGG 0.576648 2_3:-42982599 None:intergenic
CGGCTGAGTAAAAGAAAACC+AGG 0.578487 2_3:+42981138 Msa0293070:five_prime_UTR
GTTGCAGAACTGCAATCACC+AGG 0.599598 2_3:-42981103 None:intergenic
CCTAGTATGCTCCCAACCCA+TGG 0.602320 2_3:+42981635 Msa0293070:CDS
TTAGTGCCTGTTTGGTTCCG+CGG 0.603890 2_3:-42981292 None:intergenic
ATTGCAGTTCTGCAACTGAT+GGG 0.615183 2_3:+42981110 Msa0293070:five_prime_UTR
AGTTCTGCAACTGATGGGCA+TGG 0.648792 2_3:+42981115 Msa0293070:five_prime_UTR
GGGATGCTGGGTGAATATGC+TGG 0.660443 2_3:+42981175 Msa0293070:five_prime_UTR
ACATGGAAGAATACGTGTGT+TGG 0.667868 2_3:-42981530 None:intergenic
TTATGAATTACATCGCACAA+TGG 0.669043 2_3:+42981417 Msa0293070:CDS
CTCAAGGCCATGTAGCTCTG+CGG 0.684430 2_3:-42982583 None:intergenic
ATACGTGTGTTGGTGAACAG+AGG 0.689086 2_3:-42981520 None:intergenic
GCGTTTAAGCGTTCCCACCG+CGG 0.701706 2_3:+42981275 Msa0293070:five_prime_UTR
TCTGCAACTGATGGGCATGG+CGG 0.746814 2_3:+42981118 Msa0293070:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCCTTTCAAATTAGTAT+CGG + chr2_3:42981752-42981771 Msa0293070:intron 20.0%
!! CATCAGTTAAATTAACATAT+AGG - chr2_3:42982441-42982460 None:intergenic 20.0%
!! ATATGTTAATTTAACTGATG+AGG + chr2_3:42982441-42982460 Msa0293070:intron 20.0%
!!! AGATATTAAAACTGGATTTT+CGG - chr2_3:42982490-42982509 None:intergenic 20.0%
!!! TTTTCCTTTCAAATTAGTAT+CGG + chr2_3:42981752-42981771 Msa0293070:intron 20.0%
!! CATCAGTTAAATTAACATAT+AGG - chr2_3:42982441-42982460 None:intergenic 20.0%
!! ATATGTTAATTTAACTGATG+AGG + chr2_3:42982441-42982460 Msa0293070:intron 20.0%
!!! AGATATTAAAACTGGATTTT+CGG - chr2_3:42982490-42982509 None:intergenic 20.0%
!!! TTTCAATTTTCAAGTGTGTT+TGG - chr2_3:42981230-42981249 None:intergenic 25.0%
! ACTTGAAAATTGAAAAACCA+CGG + chr2_3:42981235-42981254 Msa0293070:five_prime_UTR 25.0%
! AATAGCTGACAATTCTATTA+GGG - chr2_3:42981691-42981710 None:intergenic 25.0%
! AATTGAATGTTACATGTGTT+TGG - chr2_3:42981722-42981741 None:intergenic 25.0%
! GTGAATGAATGAATATATGT+TGG + chr2_3:42981829-42981848 Msa0293070:intron 25.0%
!!! TGATTTTAGAAGTGGAATTT+TGG + chr2_3:42981855-42981874 Msa0293070:intron 25.0%
!!! AATTTTGGCATTGAAAGATT+TGG + chr2_3:42981870-42981889 Msa0293070:intron 25.0%
! AGTATTGCTTTCTATATTCA+TGG + chr2_3:42982046-42982065 Msa0293070:intron 25.0%
!! ATTGTTCAGTGATTTTAAAC+AGG + chr2_3:42982156-42982175 Msa0293070:intron 25.0%
!!! TTTCAATTTTCAAGTGTGTT+TGG - chr2_3:42981230-42981249 None:intergenic 25.0%
! ACTTGAAAATTGAAAAACCA+CGG + chr2_3:42981235-42981254 Msa0293070:five_prime_UTR 25.0%
! AATAGCTGACAATTCTATTA+GGG - chr2_3:42981691-42981710 None:intergenic 25.0%
! AATTGAATGTTACATGTGTT+TGG - chr2_3:42981722-42981741 None:intergenic 25.0%
! GTGAATGAATGAATATATGT+TGG + chr2_3:42981829-42981848 Msa0293070:intron 25.0%
!!! TGATTTTAGAAGTGGAATTT+TGG + chr2_3:42981855-42981874 Msa0293070:intron 25.0%
!!! AATTTTGGCATTGAAAGATT+TGG + chr2_3:42981870-42981889 Msa0293070:intron 25.0%
! AGTATTGCTTTCTATATTCA+TGG + chr2_3:42982046-42982065 Msa0293070:intron 25.0%
!! ATTGTTCAGTGATTTTAAAC+AGG + chr2_3:42982156-42982175 Msa0293070:intron 25.0%
AACCAGGAAAATAAAAAACC+AGG + chr2_3:42981154-42981173 Msa0293070:five_prime_UTR 30.0%
ACCAGGAAAATAAAAAACCA+GGG + chr2_3:42981155-42981174 Msa0293070:five_prime_UTR 30.0%
TGTGCGATGTAATTCATAAA+CGG - chr2_3:42981416-42981435 None:intergenic 30.0%
TTATGAATTACATCGCACAA+TGG + chr2_3:42981417-42981436 Msa0293070:CDS 30.0%
TGAAGAAGAAAGATGAAACA+TGG - chr2_3:42981550-42981569 None:intergenic 30.0%
! TTCTTCATCTTCGTGTTTTT+CGG + chr2_3:42981563-42981582 Msa0293070:intron 30.0%
TTACAGCAATTGAGTCAAAT+GGG - chr2_3:42981592-42981611 None:intergenic 30.0%
ATTACAGCAATTGAGTCAAA+TGG - chr2_3:42981593-42981612 None:intergenic 30.0%
ACAATTCTATTAGGGTTCAA+AGG - chr2_3:42981683-42981702 None:intergenic 30.0%
CAATAGCTGACAATTCTATT+AGG - chr2_3:42981692-42981711 None:intergenic 30.0%
TAGACCGATACTAATTTGAA+AGG - chr2_3:42981759-42981778 None:intergenic 30.0%
!!! GTTGGTATTGATTTTAGAAG+TGG + chr2_3:42981847-42981866 Msa0293070:intron 30.0%
!!! ATTTGGTTTGGTTTTTGAAC+AGG + chr2_3:42981887-42981906 Msa0293070:intron 30.0%
! ACAACCTATTTGGTGAAATA+GGG - chr2_3:42981973-42981992 None:intergenic 30.0%
! AACAACCTATTTGGTGAAAT+AGG - chr2_3:42981974-42981993 None:intergenic 30.0%
ACTACTTCAAACAACCTATT+TGG - chr2_3:42981983-42982002 None:intergenic 30.0%
TTTCAAATTCTGCTATGCTA+TGG + chr2_3:42982309-42982328 Msa0293070:intron 30.0%
AACCAGGAAAATAAAAAACC+AGG + chr2_3:42981154-42981173 Msa0293070:five_prime_UTR 30.0%
ACCAGGAAAATAAAAAACCA+GGG + chr2_3:42981155-42981174 Msa0293070:five_prime_UTR 30.0%
TGTGCGATGTAATTCATAAA+CGG - chr2_3:42981416-42981435 None:intergenic 30.0%
TTATGAATTACATCGCACAA+TGG + chr2_3:42981417-42981436 Msa0293070:CDS 30.0%
TGAAGAAGAAAGATGAAACA+TGG - chr2_3:42981550-42981569 None:intergenic 30.0%
! TTCTTCATCTTCGTGTTTTT+CGG + chr2_3:42981563-42981582 Msa0293070:intron 30.0%
TTACAGCAATTGAGTCAAAT+GGG - chr2_3:42981592-42981611 None:intergenic 30.0%
ATTACAGCAATTGAGTCAAA+TGG - chr2_3:42981593-42981612 None:intergenic 30.0%
ACAATTCTATTAGGGTTCAA+AGG - chr2_3:42981683-42981702 None:intergenic 30.0%
CAATAGCTGACAATTCTATT+AGG - chr2_3:42981692-42981711 None:intergenic 30.0%
TAGACCGATACTAATTTGAA+AGG - chr2_3:42981759-42981778 None:intergenic 30.0%
!!! GTTGGTATTGATTTTAGAAG+TGG + chr2_3:42981847-42981866 Msa0293070:intron 30.0%
!!! ATTTGGTTTGGTTTTTGAAC+AGG + chr2_3:42981887-42981906 Msa0293070:intron 30.0%
! ACAACCTATTTGGTGAAATA+GGG - chr2_3:42981973-42981992 None:intergenic 30.0%
! AACAACCTATTTGGTGAAAT+AGG - chr2_3:42981974-42981993 None:intergenic 30.0%
ACTACTTCAAACAACCTATT+TGG - chr2_3:42981983-42982002 None:intergenic 30.0%
TTTCAAATTCTGCTATGCTA+TGG + chr2_3:42982309-42982328 Msa0293070:intron 30.0%
!!! TCCCTGGTTTTTTATTTTCC+TGG - chr2_3:42981159-42981178 None:intergenic 35.0%
AAATAAAAAACCAGGGATGC+TGG + chr2_3:42981162-42981181 Msa0293070:five_prime_UTR 35.0%
AATAAAAAACCAGGGATGCT+GGG + chr2_3:42981163-42981182 Msa0293070:five_prime_UTR 35.0%
TAAACAAGTTAGTGCCTGTT+TGG - chr2_3:42981303-42981322 None:intergenic 35.0%
!! AGAGATTCTTTCTGAAGTAG+AGG - chr2_3:42981342-42981361 None:intergenic 35.0%
GATTATTGCTGAACGATCTA+AGG - chr2_3:42981462-42981481 None:intergenic 35.0%
TTCTGTTACCTTCAATTCAC+CGG + chr2_3:42981491-42981510 Msa0293070:CDS 35.0%
! TGGCATTGAAAGATTTGGTT+TGG + chr2_3:42981875-42981894 Msa0293070:intron 35.0%
GCAATTAAAGACCTTGCAAA+AGG + chr2_3:42981920-42981939 Msa0293070:CDS 35.0%
! TCAAGTTCAATCCTTTTGCA+AGG - chr2_3:42981934-42981953 None:intergenic 35.0%
! CAACCTATTTGGTGAAATAG+GGG - chr2_3:42981972-42981991 None:intergenic 35.0%
!!! GTGTGCTGTTTTTAACTATC+TGG + chr2_3:42982070-42982089 Msa0293070:intron 35.0%
TATACTCAAACAGACAAGAC+AGG - chr2_3:42982117-42982136 None:intergenic 35.0%
! AGTGTAGCGGAATTCAAAAA+CGG - chr2_3:42982212-42982231 None:intergenic 35.0%
AGAAAAGCTGAAAAGCAAGA+AGG - chr2_3:42982384-42982403 None:intergenic 35.0%
TCAGCTGCAGATATTAAAAC+TGG - chr2_3:42982498-42982517 None:intergenic 35.0%
!!! TCCCTGGTTTTTTATTTTCC+TGG - chr2_3:42981159-42981178 None:intergenic 35.0%
AAATAAAAAACCAGGGATGC+TGG + chr2_3:42981162-42981181 Msa0293070:five_prime_UTR 35.0%
AATAAAAAACCAGGGATGCT+GGG + chr2_3:42981163-42981182 Msa0293070:five_prime_UTR 35.0%
TAAACAAGTTAGTGCCTGTT+TGG - chr2_3:42981303-42981322 None:intergenic 35.0%
!! AGAGATTCTTTCTGAAGTAG+AGG - chr2_3:42981342-42981361 None:intergenic 35.0%
GATTATTGCTGAACGATCTA+AGG - chr2_3:42981462-42981481 None:intergenic 35.0%
TTCTGTTACCTTCAATTCAC+CGG + chr2_3:42981491-42981510 Msa0293070:CDS 35.0%
! TGGCATTGAAAGATTTGGTT+TGG + chr2_3:42981875-42981894 Msa0293070:intron 35.0%
GCAATTAAAGACCTTGCAAA+AGG + chr2_3:42981920-42981939 Msa0293070:CDS 35.0%
! TCAAGTTCAATCCTTTTGCA+AGG - chr2_3:42981934-42981953 None:intergenic 35.0%
! CAACCTATTTGGTGAAATAG+GGG - chr2_3:42981972-42981991 None:intergenic 35.0%
!!! GTGTGCTGTTTTTAACTATC+TGG + chr2_3:42982070-42982089 Msa0293070:intron 35.0%
TATACTCAAACAGACAAGAC+AGG - chr2_3:42982117-42982136 None:intergenic 35.0%
! AGTGTAGCGGAATTCAAAAA+CGG - chr2_3:42982212-42982231 None:intergenic 35.0%
AGAAAAGCTGAAAAGCAAGA+AGG - chr2_3:42982384-42982403 None:intergenic 35.0%
TCAGCTGCAGATATTAAAAC+TGG - chr2_3:42982498-42982517 None:intergenic 35.0%
ATTGCAGTTCTGCAACTGAT+GGG + chr2_3:42981110-42981129 Msa0293070:five_prime_UTR 40.0%
! TCTGAAGTAGAGGTGGAAAT+CGG - chr2_3:42981332-42981351 None:intergenic 40.0%
!! GATTCTTTCTGAAGTAGAGG+TGG - chr2_3:42981339-42981358 None:intergenic 40.0%
ACATGGAAGAATACGTGTGT+TGG - chr2_3:42981533-42981552 None:intergenic 40.0%
CACAAGAACCAAATCACCAT+GGG - chr2_3:42981654-42981673 None:intergenic 40.0%
TCACAAGAACCAAATCACCA+TGG - chr2_3:42981655-42981674 None:intergenic 40.0%
!!! TGGTTTGGTTTTTGAACAGG+TGG + chr2_3:42981890-42981909 Msa0293070:intron 40.0%
CAACCCCTATTTCACCAAAT+AGG + chr2_3:42981966-42981985 Msa0293070:CDS 40.0%
ACTATAGCGCTATAGTGTAG+CGG - chr2_3:42982225-42982244 None:intergenic 40.0%
TAGCTGCTATTGGACAATAC+TGG + chr2_3:42982337-42982356 Msa0293070:intron 40.0%
!! TCTTGTGTTCTTGGTGTCAA+GGG + chr2_3:42982557-42982576 Msa0293070:CDS 40.0%
ATTGCAGTTCTGCAACTGAT+GGG + chr2_3:42981110-42981129 Msa0293070:five_prime_UTR 40.0%
! TCTGAAGTAGAGGTGGAAAT+CGG - chr2_3:42981332-42981351 None:intergenic 40.0%
!! GATTCTTTCTGAAGTAGAGG+TGG - chr2_3:42981339-42981358 None:intergenic 40.0%
ACATGGAAGAATACGTGTGT+TGG - chr2_3:42981533-42981552 None:intergenic 40.0%
CACAAGAACCAAATCACCAT+GGG - chr2_3:42981654-42981673 None:intergenic 40.0%
TCACAAGAACCAAATCACCA+TGG - chr2_3:42981655-42981674 None:intergenic 40.0%
!!! TGGTTTGGTTTTTGAACAGG+TGG + chr2_3:42981890-42981909 Msa0293070:intron 40.0%
CAACCCCTATTTCACCAAAT+AGG + chr2_3:42981966-42981985 Msa0293070:CDS 40.0%
ACTATAGCGCTATAGTGTAG+CGG - chr2_3:42982225-42982244 None:intergenic 40.0%
TAGCTGCTATTGGACAATAC+TGG + chr2_3:42982337-42982356 Msa0293070:intron 40.0%
!! TCTTGTGTTCTTGGTGTCAA+GGG + chr2_3:42982557-42982576 Msa0293070:CDS 40.0%
GATTGCAGTTCTGCAACTGA+TGG + chr2_3:42981109-42981128 Msa0293070:five_prime_UTR 45.0%
CGGCTGAGTAAAAGAAAACC+AGG + chr2_3:42981138-42981157 Msa0293070:five_prime_UTR 45.0%
! TGGCAATGCTGAATCGCTTT+TGG + chr2_3:42981195-42981214 Msa0293070:five_prime_UTR 45.0%
! ATACGTGTGTTGGTGAACAG+AGG - chr2_3:42981523-42981542 None:intergenic 45.0%
TGCTGTAATCCTCTGTTTGC+AGG + chr2_3:42981604-42981623 Msa0293070:intron 45.0%
GAACCAAATCACCATGGGTT+GGG - chr2_3:42981649-42981668 None:intergenic 45.0%
AGAACCAAATCACCATGGGT+TGG - chr2_3:42981650-42981669 None:intergenic 45.0%
GACATGTAAGTGTGTCAGTG+CGG + chr2_3:42981779-42981798 Msa0293070:intron 45.0%
TTTGGTGAAATAGGGGTTGC+TGG - chr2_3:42981965-42981984 None:intergenic 45.0%
TTGTCAAATAGCCGCTGTTG+CGG - chr2_3:42982249-42982268 None:intergenic 45.0%
TATGGCGCTATAGCTGCTAT+TGG + chr2_3:42982327-42982346 Msa0293070:intron 45.0%
GGATGCTCTTGCTAGATTGT+AGG + chr2_3:42982462-42982481 Msa0293070:intron 45.0%
!! AGCAGATCTTTAGTGCTGGT+GGG + chr2_3:42982517-42982536 Msa0293070:CDS 45.0%
!! CTCTTGTGTTCTTGGTGTCA+AGG + chr2_3:42982556-42982575 Msa0293070:CDS 45.0%
GATTGCAGTTCTGCAACTGA+TGG + chr2_3:42981109-42981128 Msa0293070:five_prime_UTR 45.0%
CGGCTGAGTAAAAGAAAACC+AGG + chr2_3:42981138-42981157 Msa0293070:five_prime_UTR 45.0%
! TGGCAATGCTGAATCGCTTT+TGG + chr2_3:42981195-42981214 Msa0293070:five_prime_UTR 45.0%
! ATACGTGTGTTGGTGAACAG+AGG - chr2_3:42981523-42981542 None:intergenic 45.0%
TGCTGTAATCCTCTGTTTGC+AGG + chr2_3:42981604-42981623 Msa0293070:intron 45.0%
GAACCAAATCACCATGGGTT+GGG - chr2_3:42981649-42981668 None:intergenic 45.0%
AGAACCAAATCACCATGGGT+TGG - chr2_3:42981650-42981669 None:intergenic 45.0%
GACATGTAAGTGTGTCAGTG+CGG + chr2_3:42981779-42981798 Msa0293070:intron 45.0%
TTTGGTGAAATAGGGGTTGC+TGG - chr2_3:42981965-42981984 None:intergenic 45.0%
TTGTCAAATAGCCGCTGTTG+CGG - chr2_3:42982249-42982268 None:intergenic 45.0%
TATGGCGCTATAGCTGCTAT+TGG + chr2_3:42982327-42982346 Msa0293070:intron 45.0%
GGATGCTCTTGCTAGATTGT+AGG + chr2_3:42982462-42982481 Msa0293070:intron 45.0%
!! AGCAGATCTTTAGTGCTGGT+GGG + chr2_3:42982517-42982536 Msa0293070:CDS 45.0%
!! CTCTTGTGTTCTTGGTGTCA+AGG + chr2_3:42982556-42982575 Msa0293070:CDS 45.0%
GAACTGCAATCACCAGGTTG+AGG - chr2_3:42981100-42981119 None:intergenic 50.0%
GTTGCAGAACTGCAATCACC+AGG - chr2_3:42981106-42981125 None:intergenic 50.0%
! AGTTCTGCAACTGATGGGCA+TGG + chr2_3:42981115-42981134 Msa0293070:five_prime_UTR 50.0%
! AGGTTTCAGAGCTTTTGCCG+TGG - chr2_3:42981255-42981274 None:intergenic 50.0%
! TTAGTGCCTGTTTGGTTCCG+CGG - chr2_3:42981295-42981314 None:intergenic 50.0%
GGTAGTTGCCGGTGAATTGA+AGG - chr2_3:42981502-42981521 None:intergenic 50.0%
TGGTGAACAGAGGTAGTTGC+CGG - chr2_3:42981513-42981532 None:intergenic 50.0%
ATCCTCTGTTTGCAGGCGTA+TGG + chr2_3:42981611-42981630 Msa0293070:intron 50.0%
GAAAAGCAAGAAGGCTCAGC+AGG - chr2_3:42982375-42982394 None:intergenic 50.0%
GCTGAGCAGATCTTTAGTGC+TGG + chr2_3:42982513-42982532 Msa0293070:CDS 50.0%
! GAGCAGATCTTTAGTGCTGG+TGG + chr2_3:42982516-42982535 Msa0293070:CDS 50.0%
!! TCTTTAGTGCTGGTGGGAAG+AGG + chr2_3:42982523-42982542 Msa0293070:CDS 50.0%
GAGACCAGCTCTTGTGTTCT+TGG + chr2_3:42982548-42982567 Msa0293070:CDS 50.0%
GACACCAAGAACACAAGAGC+TGG - chr2_3:42982555-42982574 None:intergenic 50.0%
GAACTGCAATCACCAGGTTG+AGG - chr2_3:42981100-42981119 None:intergenic 50.0%
GTTGCAGAACTGCAATCACC+AGG - chr2_3:42981106-42981125 None:intergenic 50.0%
! AGTTCTGCAACTGATGGGCA+TGG + chr2_3:42981115-42981134 Msa0293070:five_prime_UTR 50.0%
! AGGTTTCAGAGCTTTTGCCG+TGG - chr2_3:42981255-42981274 None:intergenic 50.0%
! TTAGTGCCTGTTTGGTTCCG+CGG - chr2_3:42981295-42981314 None:intergenic 50.0%
GGTAGTTGCCGGTGAATTGA+AGG - chr2_3:42981502-42981521 None:intergenic 50.0%
TGGTGAACAGAGGTAGTTGC+CGG - chr2_3:42981513-42981532 None:intergenic 50.0%
ATCCTCTGTTTGCAGGCGTA+TGG + chr2_3:42981611-42981630 Msa0293070:intron 50.0%
GAAAAGCAAGAAGGCTCAGC+AGG - chr2_3:42982375-42982394 None:intergenic 50.0%
GCTGAGCAGATCTTTAGTGC+TGG + chr2_3:42982513-42982532 Msa0293070:CDS 50.0%
! GAGCAGATCTTTAGTGCTGG+TGG + chr2_3:42982516-42982535 Msa0293070:CDS 50.0%
!! TCTTTAGTGCTGGTGGGAAG+AGG + chr2_3:42982523-42982542 Msa0293070:CDS 50.0%
GAGACCAGCTCTTGTGTTCT+TGG + chr2_3:42982548-42982567 Msa0293070:CDS 50.0%
GACACCAAGAACACAAGAGC+TGG - chr2_3:42982555-42982574 None:intergenic 50.0%
! TCTGCAACTGATGGGCATGG+CGG + chr2_3:42981118-42981137 Msa0293070:five_prime_UTR 55.0%
GCATATTCACCCAGCATCCC+TGG - chr2_3:42981175-42981194 None:intergenic 55.0%
GGGATGCTGGGTGAATATGC+TGG + chr2_3:42981175-42981194 Msa0293070:five_prime_UTR 55.0%
GTCCATACGCCTGCAAACAG+AGG - chr2_3:42981616-42981635 None:intergenic 55.0%
!! CCATGGGTTGGGAGCATACT+AGG - chr2_3:42981638-42981657 None:intergenic 55.0%
CCTAGTATGCTCCCAACCCA+TGG + chr2_3:42981635-42981654 Msa0293070:CDS 55.0%
GCTCCCAACCCATGGTGATT+TGG + chr2_3:42981643-42981662 Msa0293070:intron 55.0%
GCGCTATAGTACCGCAACAG+CGG + chr2_3:42982235-42982254 Msa0293070:intron 55.0%
! CTCAAGGCCATGTAGCTCTG+CGG - chr2_3:42982586-42982605 None:intergenic 55.0%
! TCTGCAACTGATGGGCATGG+CGG + chr2_3:42981118-42981137 Msa0293070:five_prime_UTR 55.0%
GCATATTCACCCAGCATCCC+TGG - chr2_3:42981175-42981194 None:intergenic 55.0%
GGGATGCTGGGTGAATATGC+TGG + chr2_3:42981175-42981194 Msa0293070:five_prime_UTR 55.0%
GTCCATACGCCTGCAAACAG+AGG - chr2_3:42981616-42981635 None:intergenic 55.0%
!! CCATGGGTTGGGAGCATACT+AGG - chr2_3:42981638-42981657 None:intergenic 55.0%
CCTAGTATGCTCCCAACCCA+TGG + chr2_3:42981635-42981654 Msa0293070:CDS 55.0%
GCTCCCAACCCATGGTGATT+TGG + chr2_3:42981643-42981662 Msa0293070:intron 55.0%
GCGCTATAGTACCGCAACAG+CGG + chr2_3:42982235-42982254 Msa0293070:intron 55.0%
! CTCAAGGCCATGTAGCTCTG+CGG - chr2_3:42982586-42982605 None:intergenic 55.0%
CGGTGGGAACGCTTAAACGC+AGG - chr2_3:42981275-42981294 None:intergenic 60.0%
GCGTTTAAGCGTTCCCACCG+CGG + chr2_3:42981275-42981294 Msa0293070:five_prime_UTR 60.0%
TTCCCACCGCGGAACCAAAC+AGG + chr2_3:42981286-42981305 Msa0293070:five_prime_UTR 60.0%
! TGCCTGTTTGGTTCCGCGGT+GGG - chr2_3:42981291-42981310 None:intergenic 60.0%
CGGTGGGAACGCTTAAACGC+AGG - chr2_3:42981275-42981294 None:intergenic 60.0%
GCGTTTAAGCGTTCCCACCG+CGG + chr2_3:42981275-42981294 Msa0293070:five_prime_UTR 60.0%
TTCCCACCGCGGAACCAAAC+AGG + chr2_3:42981286-42981305 Msa0293070:five_prime_UTR 60.0%
! TGCCTGTTTGGTTCCGCGGT+GGG - chr2_3:42981291-42981310 None:intergenic 60.0%
! GTGCCTGTTTGGTTCCGCGG+TGG - chr2_3:42981292-42981311 None:intergenic 65.0%
AGGGCGACCGCAGAGCTACA+TGG + chr2_3:42982576-42982595 Msa0293070:CDS 65.0%
! GTGCCTGTTTGGTTCCGCGG+TGG - chr2_3:42981292-42981311 None:intergenic 65.0%
AGGGCGACCGCAGAGCTACA+TGG + chr2_3:42982576-42982595 Msa0293070:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 42981097 42982608 42981097 ID=Msa0293070;Name=Msa0293070
chr2_3 mRNA 42981097 42982608 42981097 ID=Msa0293070-mRNA-1;Parent=Msa0293070;Name=Msa0293070-mRNA-1;_AED=0.38;_eAED=0.38;_QI=313|0.33|0.25|1|0.33|0.5|4|0|141
chr2_3 exon 42981097 42981538 42981097 ID=Msa0293070-mRNA-1:exon:13723;Parent=Msa0293070-mRNA-1
chr2_3 exon 42981626 42981656 42981626 ID=Msa0293070-mRNA-1:exon:13724;Parent=Msa0293070-mRNA-1
chr2_3 exon 42981909 42982042 42981909 ID=Msa0293070-mRNA-1:exon:13725;Parent=Msa0293070-mRNA-1
chr2_3 exon 42982477 42982608 42982477 ID=Msa0293070-mRNA-1:exon:13726;Parent=Msa0293070-mRNA-1
chr2_3 five_prime_UTR 42981097 42981409 42981097 ID=Msa0293070-mRNA-1:five_prime_utr;Parent=Msa0293070-mRNA-1
chr2_3 CDS 42981410 42981538 42981410 ID=Msa0293070-mRNA-1:cds;Parent=Msa0293070-mRNA-1
chr2_3 CDS 42981626 42981656 42981626 ID=Msa0293070-mRNA-1:cds;Parent=Msa0293070-mRNA-1
chr2_3 CDS 42981909 42982042 42981909 ID=Msa0293070-mRNA-1:cds;Parent=Msa0293070-mRNA-1
chr2_3 CDS 42982477 42982608 42982477 ID=Msa0293070-mRNA-1:cds;Parent=Msa0293070-mRNA-1
Gene Sequence

>Msa0293070

ATGCCGTTTATGAATTACATCGCACAATGGAGAAGCGTTGCAAAAGAAGCCTTAGATCGTTCAGCAATAATCGCAAAATTCTTCTGTTACCTTCAATTCACCGGCAACTACCTCTGTTCACCAACACACGCGTATGGACCTAGTATGCTCCCAACCCATGGTGGAACTCAAGCAATTAAAGACCTTGCAAAAGGATTGAACTTGAAGAGTTATCCAGCAACCCCTATTTCACCAAATAGGTTGTTTGAAGTAGTCTCTGATGATCTTCAAACACTCAATAAAAATCTTCAGTCTATTGTAGGTGCCGAAAATCCAGTTTTAATATCTGCAGCTGAGCAGATCTTTAGTGCTGGTGGGAAGAGGATGAGACCAGCTCTTGTGTTCTTGGTGTCAAGGGCGACCGCAGAGCTACATGGCCTTGAGTAA

Protein sequence

>Msa0293070

MPFMNYIAQWRSVAKEALDRSAIIAKFFCYLQFTGNYLCSPTHAYGPSMLPTHGGTQAIKDLAKGLNLKSYPATPISPNRLFEVVSDDLQTLNKNLQSIVGAENPVLISAAEQIFSAGGKRMRPALVFLVSRATAELHGLE*