AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0061130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0061130 MtrunA17_Chr1g0161031 95.568 361 16 0 1 361 1 361 0.0 694
Msa0061130 MtrunA17_Chr6g0478581 30.952 420 180 15 1 336 1 394 2.01e-33 128
Msa0061130 MtrunA17_Chr2g0301131 30.061 163 82 3 172 334 110 240 3.47e-14 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0061130 AT3G17860.1 34.561 353 190 13 1 333 1 332 4.58e-37 137
Msa0061130 AT3G17860.3 33.750 320 172 11 33 333 1 299 2.04e-32 124
Msa0061130 AT3G17860.4 33.750 320 172 11 33 333 1 299 2.04e-32 124
Msa0061130 AT3G17860.2 33.750 320 172 11 33 333 21 319 6.04e-32 123
Msa0061130 AT1G70700.1 31.564 358 148 14 1 352 1 267 2.93e-28 111
Msa0061130 AT1G70700.2 30.447 358 128 12 1 352 1 243 2.45e-27 108
Msa0061130 AT1G48500.1 30.357 336 184 9 1 333 1 289 2.18e-25 104
Msa0061130 AT1G70700.3 30.982 326 130 13 1 320 1 237 6.52e-24 100
Msa0061130 AT1G48500.2 30.556 324 173 10 1 320 1 276 1.16e-21 93.6
Msa0061130 AT1G48500.3 38.587 184 85 6 140 320 88 246 4.99e-18 82.8

Find 120 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCGGTTTCTTCAAATTA+TGG 0.144945 1_2:-19142699 Msa0061130:exon
CTCTGTTAGGAGGATATATT+TGG 0.169181 1_2:-19138771 Msa0061130:three_prime_UTR
TTGAAAAGTAAACTCTTATT+AGG 0.200819 1_2:-19138674 Msa0061130:three_prime_UTR
AAGTAGCAGTGATGAGTTTA+TGG 0.220743 1_2:-19140310 Msa0061130:CDS
CGAATGTTTCAGCAGTAAAA+TGG 0.266336 1_2:-19141936 Msa0061130:CDS
GCAAGCTATGTTCTTCATAT+TGG 0.289077 1_2:+19142801 None:intergenic
GATTTCTTGTTGAGGTTATA+TGG 0.291399 1_2:+19139235 None:intergenic
TGATATTCTAAAGATATTTC+AGG 0.304355 1_2:+19138649 None:intergenic
ATGTCTACAGGTGGACTTAT+AGG 0.310065 1_2:+19140405 None:intergenic
GAGCTAGATGCCTGAACTTC+AGG 0.316257 1_2:+19140456 None:intergenic
CCGATCGTTGGTACTGTTGC+TGG 0.321376 1_2:-19141187 Msa0061130:CDS
TAATTCAAACCAAACCAAAC+TGG 0.339436 1_2:-19142734 Msa0061130:five_prime_UTR
AGAAAGTGAATTTGCTTGAT+TGG 0.344513 1_2:+19141327 None:intergenic
CCCCACAACAAATTATTTAA+GGG 0.355484 1_2:+19138964 None:intergenic
CGTTGGTACTGTTGCTGGTT+TGG 0.366943 1_2:-19141182 Msa0061130:CDS
GAATCCAACCACTTAATATA+AGG 0.369010 1_2:+19138934 None:intergenic
TTATCTGTTTCTTCACATAC+TGG 0.372825 1_2:-19140354 Msa0061130:CDS
TCGAGCCAATGATGCTTTGC+GGG 0.375285 1_2:+19140029 None:intergenic
GCTTATCTGCAGCTTCAAAC+AGG 0.376253 1_2:-19140485 Msa0061130:CDS
GAATTTGCTTGATTGGAAAC+TGG 0.385359 1_2:+19141334 None:intergenic
AATGTATATATATCTGATCT+TGG 0.386452 1_2:+19138823 None:intergenic
AAAAGTTTCTGAAGACGATA+AGG 0.391540 1_2:-19141869 Msa0061130:CDS
AAACCAATGAAAACCCAGTT+TGG 0.408196 1_2:+19142720 None:intergenic
GACCCTTCATTGTTAATCTC+AGG 0.410284 1_2:+19142638 None:intergenic
TGTTTCTTTCATACGTTGTT+GGG 0.412136 1_2:-19142829 None:intergenic
AAGGCTAAAATGATATCTTC+TGG 0.412380 1_2:-19141850 Msa0061130:CDS
AGAAAATAGGGATGTGGTTG+AGG 0.413306 1_2:-19138737 Msa0061130:three_prime_UTR
CAGGGCTCAACCTGAAGTTC+AGG 0.416821 1_2:-19140466 Msa0061130:CDS
CATATGTATGTTTGATACAT+AGG 0.419348 1_2:-19138996 Msa0061130:three_prime_UTR
AATGAAAACCCAGTTTGGTT+TGG 0.423478 1_2:+19142725 None:intergenic
ATGTTAGCACCTATTGAATT+CGG 0.423665 1_2:+19139196 None:intergenic
GTGGTTGCATTGACTACTTT+GGG 0.425771 1_2:+19140231 None:intergenic
GGGTCTTACCTTATATTAAG+TGG 0.426315 1_2:-19138942 Msa0061130:three_prime_UTR
GATATCTTCTGGTTTCATAC+AGG 0.429332 1_2:-19141839 Msa0061130:intron
GCAGGCCCGCAAAGCATCAT+TGG 0.432249 1_2:-19140034 Msa0061130:CDS
TCCCTTAAATAATTTGTTGT+GGG 0.442794 1_2:-19138965 Msa0061130:three_prime_UTR
GCACAAATGCCGAATTCAAT+AGG 0.448545 1_2:-19139205 Msa0061130:CDS
GGTGGTTGCATTGACTACTT+TGG 0.451731 1_2:+19140230 None:intergenic
AAATTCACATTGTGTTGTAC+AGG 0.451805 1_2:+19141388 None:intergenic
GTGTTTCTTTCATACGTTGT+TGG 0.454615 1_2:-19142830 None:intergenic
GAGTAACTCCTTCTTATAGA+AGG 0.456364 1_2:-19139120 Msa0061130:three_prime_UTR
GGCACAAGCCATCATGTTGT+TGG 0.459085 1_2:-19140517 Msa0061130:CDS
AAACTTACCTCATTGCTTGG+TGG 0.467237 1_2:-19138704 Msa0061130:three_prime_UTR
AAAAGTAGGATATCTCTGTT+AGG 0.469099 1_2:-19138784 Msa0061130:three_prime_UTR
AGGACTTGAAATACCAGAGC+AGG 0.472355 1_2:+19140377 None:intergenic
CTGCTACTTGAGCCACTCCC+TGG 0.474711 1_2:+19140324 None:intergenic
GCTATGTTCTTCATATTGGC+TGG 0.476030 1_2:+19142805 None:intergenic
AGCAGAGACTTTGTTCAAGA+AGG 0.476877 1_2:+19141912 None:intergenic
TGTTATCCTTGGTTTGCTAC+CGG 0.481772 1_2:+19139145 None:intergenic
CCTTAAATAATTTGTTGTGG+GGG 0.484319 1_2:-19138963 Msa0061130:three_prime_UTR
TTCCCTTAAATAATTTGTTG+TGG 0.487035 1_2:-19138966 Msa0061130:three_prime_UTR
CTTACCTTATATTAAGTGGT+TGG 0.487092 1_2:-19138938 Msa0061130:three_prime_UTR
TCACATACTGGTCCACAGCC+AGG 0.488582 1_2:-19140342 Msa0061130:CDS
CTATGCTAATGCTATACTGT+TGG 0.490640 1_2:+19138900 None:intergenic
TCTTTGTTAAACCAAACAAA+AGG 0.492343 1_2:+19142774 None:intergenic
CAAGCAGATGTGGTAGGAGT+AGG 0.492652 1_2:+19140267 None:intergenic
CTTAAATAATTTGTTGTGGG+GGG 0.493779 1_2:-19138962 Msa0061130:three_prime_UTR
CTTGAGCCACTCCCTGGCTG+TGG 0.494035 1_2:+19140330 None:intergenic
GTATGTGAAGAAACAGATAA+AGG 0.494684 1_2:+19140357 None:intergenic
ATCATGTTGTTGGCTGGAAG+TGG 0.494803 1_2:-19140507 Msa0061130:CDS
ATCGAGCCAATGATGCTTTG+CGG 0.499003 1_2:+19140028 None:intergenic
GAAAATAGGGATGTGGTTGA+GGG 0.501278 1_2:-19138736 Msa0061130:three_prime_UTR
CAAGCCATCATGTTGTTGGC+TGG 0.503763 1_2:-19140513 Msa0061130:CDS
TTGAAACTTACCTCATTGCT+TGG 0.503780 1_2:-19138707 Msa0061130:three_prime_UTR
AATGCGAAGCAATCACTACT+TGG 0.504587 1_2:-19141244 Msa0061130:CDS
GAGTTACTCATTGTTATCCT+TGG 0.505605 1_2:+19139134 None:intergenic
CCCTTAAATAATTTGTTGTG+GGG 0.508409 1_2:-19138964 Msa0061130:three_prime_UTR
TGTCAGATTTAGTTACATAA+CGG 0.513985 1_2:+19138876 None:intergenic
ATTTAAAGAAAATAGGGATG+TGG 0.514631 1_2:-19138743 Msa0061130:three_prime_UTR
TAGAAGGAGACTACATAAGA+TGG 0.514753 1_2:-19139104 Msa0061130:three_prime_UTR
GCAACCACCATGGTTCCATC+AGG 0.516533 1_2:-19140216 Msa0061130:intron
CATCCTCAGATTTCTTGTTG+AGG 0.517588 1_2:+19139227 None:intergenic
TGTAGTCTCCTTCTATAAGA+AGG 0.520559 1_2:+19139112 None:intergenic
AACATGGTAAGTTGAGGAGC+AGG 0.523147 1_2:+19141042 None:intergenic
TCACCTGAGATTAACAATGA+AGG 0.525032 1_2:-19142641 Msa0061130:CDS
AATTCAAACCAAACCAAACT+GGG 0.526934 1_2:-19142733 Msa0061130:five_prime_UTR
AAATTCGCATCAGGTGATGA+TGG 0.528192 1_2:-19140432 Msa0061130:CDS
GAGCAGGGTGGTATGTCTAC+AGG 0.528533 1_2:+19140393 None:intergenic
CACTAGTTTGCAAGCAGATG+TGG 0.530296 1_2:+19140257 None:intergenic
GCAGAGACTTTGTTCAAGAA+GGG 0.533315 1_2:+19141913 None:intergenic
CATTCAGTTCTTCCGATCGT+TGG 0.534965 1_2:-19141199 Msa0061130:CDS
TCTAGCTCGAAATTCGCATC+AGG 0.536374 1_2:-19140441 Msa0061130:CDS
CACTAGTACTGCTAATATGC+CGG 0.542872 1_2:-19139164 Msa0061130:CDS
AGTTGAGGAGCAGGTGCAGA+TGG 0.548573 1_2:+19141051 None:intergenic
GTAGACATACCACCCTGCTC+TGG 0.550254 1_2:-19140390 Msa0061130:CDS
CACAGTACCGCCATAAAACA+TGG 0.558159 1_2:+19141026 None:intergenic
AAGCAGATGTGGTAGGAGTA+GGG 0.560739 1_2:+19140268 None:intergenic
GCGAAGCAATCACTACTTGG+TGG 0.562781 1_2:-19141241 Msa0061130:CDS
TGTATGTTTGATACATAGGT+AGG 0.563499 1_2:-19138992 Msa0061130:three_prime_UTR
AATGATGCTTTGCGGGCCTG+CGG 0.566874 1_2:+19140036 None:intergenic
CACCTGAGATTAACAATGAA+GGG 0.567172 1_2:-19142640 Msa0061130:CDS
CAATGATATCACTCCTGAGA+AGG 0.574823 1_2:-19140995 Msa0061130:intron
ACTGGTCCACAGCCAGGGAG+TGG 0.579269 1_2:-19140336 Msa0061130:CDS
ATTAGCAGTACTAGTGGTCG+CGG 0.581937 1_2:+19139171 None:intergenic
CACATACTGGTCCACAGCCA+GGG 0.588678 1_2:-19140341 Msa0061130:CDS
CTTATCTGCAGCTTCAAACA+GGG 0.597255 1_2:-19140484 Msa0061130:CDS
TCAAGCAAATTCACTTTCTG+CGG 0.601727 1_2:-19141323 Msa0061130:CDS
ACTTCCAGCCAACAACATGA+TGG 0.615633 1_2:+19140509 None:intergenic
CGGCATATTAGCAGTACTAG+TGG 0.617445 1_2:+19139165 None:intergenic
ATACATATGAATCTCAGCAT+AGG 0.627487 1_2:+19139010 None:intergenic
AGTAGGATATCTCTGTTAGG+AGG 0.627796 1_2:-19138781 Msa0061130:three_prime_UTR
TAGAACTCTTTCAAACACGA+TGG 0.630111 1_2:-19141445 Msa0061130:CDS
TCTTTCAAACACGATGGACA+AGG 0.634289 1_2:-19141439 Msa0061130:CDS
GGACTTGAAATACCAGAGCA+GGG 0.635730 1_2:+19140378 None:intergenic
CCAGCAACAGTACCAACGAT+CGG 0.636094 1_2:+19141187 None:intergenic
CCATAAAACATGGTAAGTTG+AGG 0.638856 1_2:+19141036 None:intergenic
ATGGCTGCTAAAACATCTAG+AGG 0.639805 1_2:-19140291 Msa0061130:CDS
ACGATCGGAAGAACTGAATG+AGG 0.643920 1_2:+19141202 None:intergenic
CAGGGTGGTATGTCTACAGG+TGG 0.644694 1_2:+19140396 None:intergenic
TTGCTGGTTTGGTTGAACCA+TGG 0.654058 1_2:-19141171 Msa0061130:intron
TAACCTCAACAAGAAATCTG+AGG 0.657118 1_2:-19139230 Msa0061130:CDS
ACTAAAACCACCAAGCAATG+AGG 0.661025 1_2:+19138697 None:intergenic
AGTTTGCAAGCAGATGTGGT+AGG 0.665629 1_2:+19140261 None:intergenic
TTACATACCTGATGGAACCA+TGG 0.681302 1_2:+19140209 None:intergenic
AATATGCCGGTAGCAAACCA+AGG 0.684244 1_2:-19139151 Msa0061130:CDS
AGTAGTCAATGCAACCACCA+TGG 0.687562 1_2:-19140226 Msa0061130:CDS
TTCAAACACGATGGACAAGG+TGG 0.707235 1_2:-19141436 Msa0061130:CDS
ACTGAATGAGGTGCTGTAAG+CGG 0.719108 1_2:+19141214 None:intergenic
CTTGAAATACCAGAGCAGGG+TGG 0.775660 1_2:+19140381 None:intergenic
CATACCTGATGGAACCATGG+TGG 0.816498 1_2:+19140212 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTTTATTTAAAGAAAATA+GGG - chr1_2:19142710-19142729 Msa0061130:five_prime_UTR 10.0%
!!! TTCTTTGCTTTTTTTTTTTT+TGG - chr1_2:19138861-19138880 Msa0061130:three_prime_UTR 15.0%
!! ATACTTATATAGATGTAAAA+AGG - chr1_2:19139050-19139069 Msa0061130:three_prime_UTR 15.0%
!!! TTAATTATAGAAGTCTTTTT+AGG - chr1_2:19139836-19139855 Msa0061130:intron 15.0%
!!! ATTCATATGAAATTGATTTT+CGG - chr1_2:19139864-19139883 Msa0061130:intron 15.0%
!!! CCTATATTTATTATAACTTT+TGG + chr1_2:19141327-19141346 None:intergenic 15.0%
!! CCAAAAGTTATAATAAATAT+AGG - chr1_2:19141324-19141343 Msa0061130:CDS 15.0%
!! AATTATAAGATGTATATTCA+TGG - chr1_2:19142014-19142033 Msa0061130:intron 15.0%
!!! TGTATAAAATTATTTTGGAA+GGG + chr1_2:19142126-19142145 None:intergenic 15.0%
!!! ATGTATAAAATTATTTTGGA+AGG + chr1_2:19142127-19142146 None:intergenic 15.0%
!!! CTAGATGTATAAAATTATTT+TGG + chr1_2:19142131-19142150 None:intergenic 15.0%
!!! TATTTAGTTTTTACAAAAGT+AGG - chr1_2:19142661-19142680 Msa0061130:CDS 15.0%
!!! GGATTTTATTTAAAGAAAAT+AGG - chr1_2:19142709-19142728 Msa0061130:five_prime_UTR 15.0%
!!! AATTCTTTGAGCTTTAATTT+TGG - chr1_2:19138884-19138903 Msa0061130:three_prime_UTR 20.0%
!! TGCACCAAATTAATTATTAA+AGG - chr1_2:19139133-19139152 Msa0061130:exon 20.0%
!! GCACCAAATTAATTATTAAA+GGG - chr1_2:19139134-19139153 Msa0061130:exon 20.0%
!! ACACCCTTTAATAATTAATT+TGG + chr1_2:19139140-19139159 None:intergenic 20.0%
!! AATGTTAATAATTAGTTGTC+AGG + chr1_2:19139410-19139429 None:intergenic 20.0%
!! TGTTAAAAAATTGTGAAGTT+AGG - chr1_2:19139677-19139696 Msa0061130:intron 20.0%
!! TAAAACAAATTCACATTTAG+AGG - chr1_2:19139747-19139766 Msa0061130:intron 20.0%
!! AAAACAAATTCACATTTAGA+GGG - chr1_2:19139748-19139767 Msa0061130:intron 20.0%
!! AAACATCCTAAAATTATGTT+CGG + chr1_2:19139892-19139911 None:intergenic 20.0%
!!! AAGTTACAAGATGATTTTTT+AGG + chr1_2:19140172-19140191 None:intergenic 20.0%
!!! AAAAATCATCTTGTAACTTT+TGG - chr1_2:19140173-19140192 Msa0061130:intron 20.0%
!! CCTAAAAAATCTTTATAAGT+GGG - chr1_2:19141632-19141651 Msa0061130:intron 20.0%
!!! ATACATCTTATAATTTGTGT+TGG + chr1_2:19142009-19142028 None:intergenic 20.0%
!!! GTATAAAATTATTTTGGAAG+GGG + chr1_2:19142125-19142144 None:intergenic 20.0%
!!! CAATATTTTAAGTTACATGT+TGG + chr1_2:19142393-19142412 None:intergenic 20.0%
!! AATGTATATATATCTGATCT+TGG + chr1_2:19142639-19142658 None:intergenic 20.0%
!! TTGAAAAGTAAACTCTTATT+AGG - chr1_2:19142785-19142804 Msa0061130:five_prime_UTR 20.0%
!!! TGATATTCTAAAGATATTTC+AGG + chr1_2:19142813-19142832 None:intergenic 20.0%
! TCTTTGTTAAACCAAACAAA+AGG + chr1_2:19138688-19138707 None:intergenic 25.0%
!!! TTTGAGCTTTAATTTTGGTA+TGG - chr1_2:19138889-19138908 Msa0061130:three_prime_UTR 25.0%
!!! TTTAATTTTGGTATGGTTTG+TGG - chr1_2:19138896-19138915 Msa0061130:three_prime_UTR 25.0%
!!! TGATTTTTCTGAAGTTGTTT+TGG - chr1_2:19138962-19138981 Msa0061130:three_prime_UTR 25.0%
!! AATTATTAAAGGGTGTAGTA+TGG - chr1_2:19139144-19139163 Msa0061130:exon 25.0%
!!! TAAATTTGGTTTTAATCCTC+CGG - chr1_2:19139169-19139188 Msa0061130:CDS 25.0%
! TTATGTTAATGATTCCTTTG+TGG - chr1_2:19139484-19139503 Msa0061130:intron 25.0%
! AAAAACAGAAATTGAGAGAA+AGG + chr1_2:19139657-19139676 None:intergenic 25.0%
! TAAATGGTAAGAACAAACAA+TGG + chr1_2:19139996-19140015 None:intergenic 25.0%
! AAATCAATCCAAGTAGAATA+GGG + chr1_2:19140512-19140531 None:intergenic 25.0%
! TAAATCAATCCAAGTAGAAT+AGG + chr1_2:19140513-19140532 None:intergenic 25.0%
! TTGTCATAAACTAACTCATT+AGG - chr1_2:19140634-19140653 Msa0061130:intron 25.0%
!! TTAAGTTGTTTATCCAAACA+AGG - chr1_2:19140726-19140745 Msa0061130:intron 25.0%
! GTATGATTTCCTTTATACTT+GGG + chr1_2:19140752-19140771 None:intergenic 25.0%
! TGTATGATTTCCTTTATACT+TGG + chr1_2:19140753-19140772 None:intergenic 25.0%
!!! AAAGATGATAACTTGTTGTA+TGG + chr1_2:19141522-19141541 None:intergenic 25.0%
! GCCTAAAAAATCTTTATAAG+TGG - chr1_2:19141631-19141650 Msa0061130:intron 25.0%
!!! CCCACTTATAAAGATTTTTT+AGG + chr1_2:19141635-19141654 None:intergenic 25.0%
! TGAAAAGGTCTTTATAAAGT+GGG - chr1_2:19141940-19141959 Msa0061130:CDS 25.0%
!!! CATCATACCAATTATTTTAG+AGG + chr1_2:19142075-19142094 None:intergenic 25.0%
! AAATAATTGGTATGATGTGT+TGG - chr1_2:19142078-19142097 Msa0061130:intron 25.0%
! CATATGTATGTTTGATACAT+AGG - chr1_2:19142463-19142482 Msa0061130:intron 25.0%
!!! TTCCCTTAAATAATTTGTTG+TGG - chr1_2:19142493-19142512 Msa0061130:intron 25.0%
!!! TCCCTTAAATAATTTGTTGT+GGG - chr1_2:19142494-19142513 Msa0061130:intron 25.0%
! TGTCAGATTTAGTTACATAA+CGG + chr1_2:19142586-19142605 None:intergenic 25.0%
! ATTTAAAGAAAATAGGGATG+TGG - chr1_2:19142716-19142735 Msa0061130:five_prime_UTR 25.0%
TAATTCAAACCAAACCAAAC+TGG - chr1_2:19138725-19138744 Msa0061130:three_prime_UTR 30.0%
AATTCAAACCAAACCAAACT+GGG - chr1_2:19138726-19138745 Msa0061130:three_prime_UTR 30.0%
TTCTCGGTTTCTTCAAATTA+TGG - chr1_2:19138760-19138779 Msa0061130:three_prime_UTR 30.0%
AATGAAGGGTCAAAAAATTC+AGG - chr1_2:19138833-19138852 Msa0061130:three_prime_UTR 30.0%
ATATAAGTATCTGTGTTGTG+AGG + chr1_2:19139040-19139059 None:intergenic 30.0%
TATTACTACACCCTTCAATA+TGG + chr1_2:19139112-19139131 None:intergenic 30.0%
GGTGTAGTATGGTTTAAATT+TGG - chr1_2:19139155-19139174 Msa0061130:CDS 30.0%
! TTTTAATCCTCCGGTTTATA+AGG - chr1_2:19139178-19139197 Msa0061130:CDS 30.0%
TTGGTAAATTAGAGTTTGGT+CGG - chr1_2:19139210-19139229 Msa0061130:CDS 30.0%
ATTAAGAACTTGAGTTCGTT+GGG - chr1_2:19139299-19139318 Msa0061130:intron 30.0%
! TCGTCTTCAGAAACTTTTAA+AGG + chr1_2:19139588-19139607 None:intergenic 30.0%
! AAAAGTTTCTGAAGACGATA+AGG - chr1_2:19139590-19139609 Msa0061130:intron 30.0%
AAGGCTAAAATGATATCTTC+TGG - chr1_2:19139609-19139628 Msa0061130:intron 30.0%
!! GTGTTTGAAAGAGTTCTAAA+TGG + chr1_2:19140012-19140031 None:intergenic 30.0%
AAATTCACATTGTGTTGTAC+AGG + chr1_2:19140074-19140093 None:intergenic 30.0%
! AGAAAGTGAATTTGCTTGAT+TGG + chr1_2:19140135-19140154 None:intergenic 30.0%
!!! ACAAGATGATTTTTTAGGAG+CGG + chr1_2:19140167-19140186 None:intergenic 30.0%
! ACTTTTGGTCAGAATATGAA+CGG - chr1_2:19140188-19140207 Msa0061130:intron 30.0%
GCATTGAACTAAAATTACCA+TGG + chr1_2:19140308-19140327 None:intergenic 30.0%
ATATATTCCCCTATTCTACT+TGG - chr1_2:19140501-19140520 Msa0061130:CDS 30.0%
AATCAATCCAAGTAGAATAG+GGG + chr1_2:19140511-19140530 None:intergenic 30.0%
AATAACCTGAAAACAGCTTA+TGG + chr1_2:19140616-19140635 None:intergenic 30.0%
AGGTTTGATCAATTGTATTC+AGG - chr1_2:19140921-19140940 Msa0061130:intron 30.0%
GTATGTGAAGAAACAGATAA+AGG + chr1_2:19141105-19141124 None:intergenic 30.0%
! TTATCTGTTTCTTCACATAC+TGG - chr1_2:19141105-19141124 Msa0061130:intron 30.0%
TTATACTGTTACATACCTGA+TGG + chr1_2:19141261-19141280 None:intergenic 30.0%
GAATAACTCCATACTACAAA+AGG + chr1_2:19141356-19141375 None:intergenic 30.0%
GAAAGGTTAGATCTAATACA+CGG - chr1_2:19141471-19141490 Msa0061130:intron 30.0%
AAAGGTTAGATCTAATACAC+GGG - chr1_2:19141472-19141491 Msa0061130:intron 30.0%
!! GATAACTTGTTGTATGGAAA+AGG + chr1_2:19141516-19141535 None:intergenic 30.0%
GACCATCTTATAATTTGAAG+TGG + chr1_2:19141703-19141722 None:intergenic 30.0%
! ACCTATAGAGACTTTTGAAT+GGG + chr1_2:19141732-19141751 None:intergenic 30.0%
ATTCAAAAGTCTCTATAGGT+GGG - chr1_2:19141732-19141751 Msa0061130:intron 30.0%
GGTCAACACAAATTATAAGA+TGG - chr1_2:19141798-19141817 Msa0061130:intron 30.0%
GTCTATATGACATCTGATTT+GGG + chr1_2:19141920-19141939 None:intergenic 30.0%
AGTCTATATGACATCTGATT+TGG + chr1_2:19141921-19141940 None:intergenic 30.0%
AGATGTCATATAGACTGAAA+AGG - chr1_2:19141925-19141944 Msa0061130:CDS 30.0%
CTGAAAAGGTCTTTATAAAG+TGG - chr1_2:19141939-19141958 Msa0061130:CDS 30.0%
!! TCGTTTGCCTCTAAAATAAT+TGG - chr1_2:19142065-19142084 Msa0061130:intron 30.0%
! TTATGTGTTTCTGTCAATAC+AGG - chr1_2:19142186-19142205 Msa0061130:intron 30.0%
! TATGTGTTTCTGTCAATACA+GGG - chr1_2:19142187-19142206 Msa0061130:intron 30.0%
GATTTCTTGTTGAGGTTATA+TGG + chr1_2:19142227-19142246 None:intergenic 30.0%
ATGTTAGCACCTATTGAATT+CGG + chr1_2:19142266-19142285 None:intergenic 30.0%
ATACATATGAATCTCAGCAT+AGG + chr1_2:19142452-19142471 None:intergenic 30.0%
TGTATGTTTGATACATAGGT+AGG - chr1_2:19142467-19142486 Msa0061130:intron 30.0%
CCCCACAACAAATTATTTAA+GGG + chr1_2:19142498-19142517 None:intergenic 30.0%
!! CCCTTAAATAATTTGTTGTG+GGG - chr1_2:19142495-19142514 Msa0061130:intron 30.0%
!! CCTTAAATAATTTGTTGTGG+GGG - chr1_2:19142496-19142515 Msa0061130:intron 30.0%
!! CTTAAATAATTTGTTGTGGG+GGG - chr1_2:19142497-19142516 Msa0061130:intron 30.0%
CTTACCTTATATTAAGTGGT+TGG - chr1_2:19142521-19142540 Msa0061130:intron 30.0%
GAATCCAACCACTTAATATA+AGG + chr1_2:19142528-19142547 None:intergenic 30.0%
AAAAGTAGGATATCTCTGTT+AGG - chr1_2:19142675-19142694 Msa0061130:CDS 30.0%
GCAAGCTATGTTCTTCATAT+TGG + chr1_2:19138661-19138680 None:intergenic 35.0%
!! AGCTTGCTTTTCCTTTTGTT+TGG - chr1_2:19138674-19138693 Msa0061130:three_prime_UTR 35.0%
AATGAAAACCCAGTTTGGTT+TGG + chr1_2:19138737-19138756 None:intergenic 35.0%
! AAACCAAACTGGGTTTTCAT+TGG - chr1_2:19138736-19138755 Msa0061130:three_prime_UTR 35.0%
AAACCAATGAAAACCCAGTT+TGG + chr1_2:19138742-19138761 None:intergenic 35.0%
TCACCTGAGATTAACAATGA+AGG - chr1_2:19138818-19138837 Msa0061130:three_prime_UTR 35.0%
CACCTGAGATTAACAATGAA+GGG - chr1_2:19138819-19138838 Msa0061130:three_prime_UTR 35.0%
TGTTTCCTTGTCCATATTGA+AGG - chr1_2:19139098-19139117 Msa0061130:three_prime_UTR 35.0%
GTTTCCTTGTCCATATTGAA+GGG - chr1_2:19139099-19139118 Msa0061130:three_prime_UTR 35.0%
AGCCTTGGTAAATTAGAGTT+TGG - chr1_2:19139206-19139225 Msa0061130:CDS 35.0%
GACCAAACTCTAATTTACCA+AGG + chr1_2:19139211-19139230 None:intergenic 35.0%
TAAATTAGAGTTTGGTCGGA+AGG - chr1_2:19139214-19139233 Msa0061130:CDS 35.0%
TTTGGTCGGAAGGTAAATAA+AGG - chr1_2:19139224-19139243 Msa0061130:CDS 35.0%
CTCAAGTTCTTAATGAGCTT+CGG + chr1_2:19139293-19139312 None:intergenic 35.0%
CATTAAGAACTTGAGTTCGT+TGG - chr1_2:19139298-19139317 Msa0061130:intron 35.0%
TTAAGAACTTGAGTTCGTTG+GGG - chr1_2:19139300-19139319 Msa0061130:intron 35.0%
CGAATGTTTCAGCAGTAAAA+TGG - chr1_2:19139523-19139542 Msa0061130:intron 35.0%
!! GATATCTTCTGGTTTCATAC+AGG - chr1_2:19139620-19139639 Msa0061130:intron 35.0%
AGGACAACATTCAGTTAATC+AGG - chr1_2:19139697-19139716 Msa0061130:intron 35.0%
! TTTTCAGTGCAATCTGCTTA+CGG - chr1_2:19139807-19139826 Msa0061130:intron 35.0%
! TCGGATCCGAACATAATTTT+AGG - chr1_2:19139883-19139902 Msa0061130:intron 35.0%
AACAAACAATGGAAGGAAGT+GGG + chr1_2:19139985-19140004 None:intergenic 35.0%
TGGTAAGAACAAACAATGGA+AGG + chr1_2:19139992-19140011 None:intergenic 35.0%
TAGAACTCTTTCAAACACGA+TGG - chr1_2:19140014-19140033 Msa0061130:CDS 35.0%
! GAATTTGCTTGATTGGAAAC+TGG + chr1_2:19140128-19140147 None:intergenic 35.0%
TCAAGCAAATTCACTTTCTG+CGG - chr1_2:19140136-19140155 Msa0061130:intron 35.0%
CAATGCTTGAGATGTTTCTT+AGG - chr1_2:19140322-19140341 Msa0061130:CDS 35.0%
! GAGATGTTTCTTAGGAGTTT+TGG - chr1_2:19140330-19140349 Msa0061130:CDS 35.0%
CCATAAAACATGGTAAGTTG+AGG + chr1_2:19140426-19140445 None:intergenic 35.0%
! CCTCAACTTACCATGTTTTA+TGG - chr1_2:19140423-19140442 Msa0061130:CDS 35.0%
! CAACTTACCATGTTTTATGG+CGG - chr1_2:19140426-19140445 Msa0061130:CDS 35.0%
TGAGAGAAAAATACCTTCTC+AGG + chr1_2:19140480-19140499 None:intergenic 35.0%
AGTGCTTATGATAGTAGACA+AGG + chr1_2:19140541-19140560 None:intergenic 35.0%
! AATGAGAGTATGAGACTGTT+TGG - chr1_2:19140561-19140580 Msa0061130:intron 35.0%
AAGTAGCAGTGATGAGTTTA+TGG - chr1_2:19141149-19141168 Msa0061130:intron 35.0%
CTAGTTCAACCTTACAAAAC+CGG + chr1_2:19141679-19141698 None:intergenic 35.0%
GGCCACTTCAAATTATAAGA+TGG - chr1_2:19141698-19141717 Msa0061130:intron 35.0%
! CACCTATAGAGACTTTTGAA+TGG + chr1_2:19141733-19141752 None:intergenic 35.0%
CATTCAAAAGTCTCTATAGG+TGG - chr1_2:19141731-19141750 Msa0061130:intron 35.0%
AGTGCCTATCCAAAATTTGT+TGG - chr1_2:19141829-19141848 Msa0061130:intron 35.0%
! GTGCCTATCCAAAATTTGTT+GGG - chr1_2:19141830-19141849 Msa0061130:intron 35.0%
CTAGAGTGTGATCCAATAAA+GGG + chr1_2:19141859-19141878 None:intergenic 35.0%
! TCTAGAGTGTGATCCAATAA+AGG + chr1_2:19141860-19141879 None:intergenic 35.0%
AATTGGTATGATGTGTTGGA+AGG - chr1_2:19142082-19142101 Msa0061130:intron 35.0%
TAACCTCAACAAGAAATCTG+AGG - chr1_2:19142229-19142248 Msa0061130:intron 35.0%
GAGTTACTCATTGTTATCCT+TGG + chr1_2:19142328-19142347 None:intergenic 35.0%
GAGTAACTCCTTCTTATAGA+AGG - chr1_2:19142339-19142358 Msa0061130:intron 35.0%
TGTAGTCTCCTTCTATAAGA+AGG + chr1_2:19142350-19142369 None:intergenic 35.0%
TAGAAGGAGACTACATAAGA+TGG - chr1_2:19142355-19142374 Msa0061130:intron 35.0%
!! CTCAGCATAGGTTTTAATCA+TGG + chr1_2:19142440-19142459 None:intergenic 35.0%
CCCCCACAACAAATTATTTA+AGG + chr1_2:19142499-19142518 None:intergenic 35.0%
GGGTCTTACCTTATATTAAG+TGG - chr1_2:19142517-19142536 Msa0061130:intron 35.0%
CTATGCTAATGCTATACTGT+TGG + chr1_2:19142562-19142581 None:intergenic 35.0%
CTCTGTTAGGAGGATATATT+TGG - chr1_2:19142688-19142707 Msa0061130:exon 35.0%
TTGAAACTTACCTCATTGCT+TGG - chr1_2:19142752-19142771 Msa0061130:five_prime_UTR 35.0%
GCTATGTTCTTCATATTGGC+TGG + chr1_2:19138657-19138676 None:intergenic 40.0%
!!! CTGGGTTTTCATTGGTTTCT+CGG - chr1_2:19138744-19138763 Msa0061130:three_prime_UTR 40.0%
GACCCTTCATTGTTAATCTC+AGG + chr1_2:19138824-19138843 None:intergenic 40.0%
TACACCCTTCAATATGGACA+AGG + chr1_2:19139106-19139125 None:intergenic 40.0%
ATCCTCCGGTTTATAAGGAA+AGG - chr1_2:19139183-19139202 Msa0061130:CDS 40.0%
AGGCTCCTTTCCTTATAAAC+CGG + chr1_2:19139191-19139210 None:intergenic 40.0%
GTTTATAAGGAAAGGAGCCT+TGG - chr1_2:19139191-19139210 Msa0061130:CDS 40.0%
CGGAAGGTAAATAAAGGACT+CGG - chr1_2:19139230-19139249 Msa0061130:CDS 40.0%
GGAAGGTAAATAAAGGACTC+GGG - chr1_2:19139231-19139250 Msa0061130:CDS 40.0%
TAAGAACTTGAGTTCGTTGG+GGG - chr1_2:19139301-19139320 Msa0061130:intron 40.0%
!! ATTGGTTTGGCTAAGGGTTA+AGG - chr1_2:19139337-19139356 Msa0061130:intron 40.0%
GTTAAGGAGTAAGAGGACTT+GGG - chr1_2:19139353-19139372 Msa0061130:intron 40.0%
! AGCATTTTTCTCGTTCACTG+TGG + chr1_2:19139385-19139404 None:intergenic 40.0%
ATTCCTTTGTGGCTATGTGT+AGG - chr1_2:19139495-19139514 Msa0061130:intron 40.0%
AAACCTACACATAGCCACAA+AGG + chr1_2:19139501-19139520 None:intergenic 40.0%
GCAGAGACTTTGTTCAAGAA+GGG + chr1_2:19139549-19139568 None:intergenic 40.0%
AGCAGAGACTTTGTTCAAGA+AGG + chr1_2:19139550-19139569 None:intergenic 40.0%
ATTCACATTTAGAGGGTCGT+TGG - chr1_2:19139755-19139774 Msa0061130:intron 40.0%
GAACAAACAATGGAAGGAAG+TGG + chr1_2:19139986-19140005 None:intergenic 40.0%
TCTTTCAAACACGATGGACA+AGG - chr1_2:19140020-19140039 Msa0061130:CDS 40.0%
AATGCGAAGCAATCACTACT+TGG - chr1_2:19140215-19140234 Msa0061130:intron 40.0%
CAATGATATCACTCCTGAGA+AGG - chr1_2:19140464-19140483 Msa0061130:CDS 40.0%
TTTGGAGAGCTTATCGAATC+AGG - chr1_2:19140579-19140598 Msa0061130:intron 40.0%
!! CTTTATACTTGGGCCTTGTT+TGG + chr1_2:19140742-19140761 None:intergenic 40.0%
CAAACAAGGCCCAAGTATAA+AGG - chr1_2:19140740-19140759 Msa0061130:intron 40.0%
CTTATCTGCAGCTTCAAACA+GGG - chr1_2:19140975-19140994 Msa0061130:intron 40.0%
AAATTCGCATCAGGTGATGA+TGG - chr1_2:19141027-19141046 Msa0061130:CDS 40.0%
! ATGTCTACAGGTGGACTTAT+AGG + chr1_2:19141057-19141076 None:intergenic 40.0%
ATGGCTGCTAAAACATCTAG+AGG - chr1_2:19141168-19141187 Msa0061130:intron 40.0%
!! GTGGTTGCATTGACTACTTT+GGG + chr1_2:19141231-19141250 None:intergenic 40.0%
TTACATACCTGATGGAACCA+TGG + chr1_2:19141253-19141272 None:intergenic 40.0%
! GGATGCATCCTTTTGTAGTA+TGG - chr1_2:19141345-19141364 Msa0061130:CDS 40.0%
! ATTTTATGCAGCTATACCGC+AGG - chr1_2:19141407-19141426 Msa0061130:CDS 40.0%
!!! AGCATCATTGGCTCGATTTT+TGG - chr1_2:19141437-19141456 Msa0061130:CDS 40.0%
ATATCACTCACCTTACAAGC+CGG - chr1_2:19141657-19141676 Msa0061130:intron 40.0%
!! CGGTTTTGTAAGGTTGAACT+AGG - chr1_2:19141677-19141696 Msa0061130:intron 40.0%
GCCCATTCAAAAGTCTCTAT+AGG - chr1_2:19141728-19141747 Msa0061130:intron 40.0%
GCATACATCACCTTACAAGT+CGG - chr1_2:19141757-19141776 Msa0061130:intron 40.0%
! TCGCCCAACAAATTTTGGAT+AGG + chr1_2:19141836-19141855 None:intergenic 40.0%
CACTCTAGATGTCAAGTTCA+TGG - chr1_2:19141871-19141890 Msa0061130:CDS 40.0%
!! ACCTAACAAGCCAGTTTTGT+GGG - chr1_2:19141971-19141990 Msa0061130:intron 40.0%
!! AGTTTTGTGGGGTTGAGTTT+GGG - chr1_2:19141983-19142002 Msa0061130:intron 40.0%
TATGATGTGTTGGAAGGAAG+AGG - chr1_2:19142088-19142107 Msa0061130:intron 40.0%
CATCCTCAGATTTCTTGTTG+AGG + chr1_2:19142235-19142254 None:intergenic 40.0%
GCACAAATGCCGAATTCAAT+AGG - chr1_2:19142254-19142273 Msa0061130:intron 40.0%
CACTAGTACTGCTAATATGC+CGG - chr1_2:19142295-19142314 Msa0061130:intron 40.0%
!! TGTTATCCTTGGTTTGCTAC+CGG + chr1_2:19142317-19142336 None:intergenic 40.0%
AGTAGGATATCTCTGTTAGG+AGG - chr1_2:19142678-19142697 Msa0061130:CDS 40.0%
AGAAAATAGGGATGTGGTTG+AGG - chr1_2:19142722-19142741 Msa0061130:five_prime_UTR 40.0%
GAAAATAGGGATGTGGTTGA+GGG - chr1_2:19142723-19142742 Msa0061130:five_prime_UTR 40.0%
AAACTTACCTCATTGCTTGG+TGG - chr1_2:19142755-19142774 Msa0061130:five_prime_UTR 40.0%
ACTAAAACCACCAAGCAATG+AGG + chr1_2:19142765-19142784 None:intergenic 40.0%
CTCCTTTCCTTATAAACCGG+AGG + chr1_2:19139188-19139207 None:intergenic 45.0%
AAGGACTCGGGTTCGAAATT+AGG - chr1_2:19139243-19139262 Msa0061130:CDS 45.0%
CGGTTAAGCTCGAATTGATC+AGG + chr1_2:19139273-19139292 None:intergenic 45.0%
AAGAACTTGAGTTCGTTGGG+GGG - chr1_2:19139302-19139321 Msa0061130:intron 45.0%
! GTTGAGTAGCTCGATTGGTT+TGG - chr1_2:19139324-19139343 Msa0061130:intron 45.0%
!! TAGCTCGATTGGTTTGGCTA+AGG - chr1_2:19139330-19139349 Msa0061130:intron 45.0%
!! AGCTCGATTGGTTTGGCTAA+GGG - chr1_2:19139331-19139350 Msa0061130:intron 45.0%
GCTAAGGGTTAAGGAGTAAG+AGG - chr1_2:19139346-19139365 Msa0061130:intron 45.0%
GGTTAAGGAGTAAGAGGACT+TGG - chr1_2:19139352-19139371 Msa0061130:intron 45.0%
TTCAAACACGATGGACAAGG+TGG - chr1_2:19140023-19140042 Msa0061130:CDS 45.0%
!! ACTGAATGAGGTGCTGTAAG+CGG + chr1_2:19140248-19140267 None:intergenic 45.0%
ACGATCGGAAGAACTGAATG+AGG + chr1_2:19140260-19140279 None:intergenic 45.0%
CATTCAGTTCTTCCGATCGT+TGG - chr1_2:19140260-19140279 Msa0061130:CDS 45.0%
!! TTGCTGGTTTGGTTGAACCA+TGG - chr1_2:19140288-19140307 Msa0061130:CDS 45.0%
! AACATGGTAAGTTGAGGAGC+AGG + chr1_2:19140420-19140439 None:intergenic 45.0%
CACAGTACCGCCATAAAACA+TGG + chr1_2:19140436-19140455 None:intergenic 45.0%
!! CACGTCCATAAGCTGTTTTC+AGG - chr1_2:19140608-19140627 Msa0061130:intron 45.0%
ACTTCCAGCCAACAACATGA+TGG + chr1_2:19140953-19140972 None:intergenic 45.0%
! ATCATGTTGTTGGCTGGAAG+TGG - chr1_2:19140952-19140971 Msa0061130:intron 45.0%
GCTTATCTGCAGCTTCAAAC+AGG - chr1_2:19140974-19140993 Msa0061130:intron 45.0%
! TCTAGCTCGAAATTCGCATC+AGG - chr1_2:19141018-19141037 Msa0061130:CDS 45.0%
GGACTTGAAATACCAGAGCA+GGG + chr1_2:19141084-19141103 None:intergenic 45.0%
AGGACTTGAAATACCAGAGC+AGG + chr1_2:19141085-19141104 None:intergenic 45.0%
AAGCAGATGTGGTAGGAGTA+GGG + chr1_2:19141194-19141213 None:intergenic 45.0%
AGTTTGCAAGCAGATGTGGT+AGG + chr1_2:19141201-19141220 None:intergenic 45.0%
! CACTAGTTTGCAAGCAGATG+TGG + chr1_2:19141205-19141224 None:intergenic 45.0%
!! GGTGGTTGCATTGACTACTT+TGG + chr1_2:19141232-19141251 None:intergenic 45.0%
AGTAGTCAATGCAACCACCA+TGG - chr1_2:19141233-19141252 Msa0061130:CDS 45.0%
ATCGAGCCAATGATGCTTTG+CGG + chr1_2:19141434-19141453 None:intergenic 45.0%
!! TCGATTTTTGGAGAAGCGCA+AGG - chr1_2:19141449-19141468 Msa0061130:intron 45.0%
!! TTTTGGAGAAGCGCAAGGAA+AGG - chr1_2:19141454-19141473 Msa0061130:intron 45.0%
!! CCTTACAAAACCGGCTTGTA+AGG + chr1_2:19141670-19141689 None:intergenic 45.0%
!! CCTTACAAGCCGGTTTTGTA+AGG - chr1_2:19141667-19141686 Msa0061130:intron 45.0%
CAAAAGTCTCTATAGGTGGG+AGG - chr1_2:19141735-19141754 Msa0061130:intron 45.0%
! ACCTTACAAGTCGGCTTTGT+AGG - chr1_2:19141766-19141785 Msa0061130:intron 45.0%
! CCTTACAAGTCGGCTTTGTA+GGG - chr1_2:19141767-19141786 Msa0061130:intron 45.0%
! AAGGGTCGCCCAACAAATTT+TGG + chr1_2:19141841-19141860 None:intergenic 45.0%
TTTGTTGGGCGACCCTTTAT+TGG - chr1_2:19141844-19141863 Msa0061130:CDS 45.0%
TCAAGTTCATGGTGTGACGA+GGG - chr1_2:19141882-19141901 Msa0061130:CDS 45.0%
! CACCTAACAAGCCAGTTTTG+TGG - chr1_2:19141970-19141989 Msa0061130:intron 45.0%
!! CCTAACAAGCCAGTTTTGTG+GGG - chr1_2:19141972-19141991 Msa0061130:intron 45.0%
CAAACTCAACCCCACAAAAC+TGG + chr1_2:19141984-19142003 None:intergenic 45.0%
!! CAGTTTTGTGGGGTTGAGTT+TGG - chr1_2:19141982-19142001 Msa0061130:intron 45.0%
ATTAGCAGTACTAGTGGTCG+CGG + chr1_2:19142291-19142310 None:intergenic 45.0%
CGGCATATTAGCAGTACTAG+TGG + chr1_2:19142297-19142316 None:intergenic 45.0%
AATATGCCGGTAGCAAACCA+AGG - chr1_2:19142308-19142327 Msa0061130:intron 45.0%
GCGAAGCAATCACTACTTGG+TGG - chr1_2:19140218-19140237 Msa0061130:CDS 50.0%
CCAGCAACAGTACCAACGAT+CGG + chr1_2:19140275-19140294 None:intergenic 50.0%
! CGTTGGTACTGTTGCTGGTT+TGG - chr1_2:19140277-19140296 Msa0061130:CDS 50.0%
GGCACAAGCCATCATGTTGT+TGG - chr1_2:19140942-19140961 Msa0061130:intron 50.0%
CAAGCCATCATGTTGTTGGC+TGG - chr1_2:19140946-19140965 Msa0061130:intron 50.0%
GAGCTAGATGCCTGAACTTC+AGG + chr1_2:19141006-19141025 None:intergenic 50.0%
CTTGAAATACCAGAGCAGGG+TGG + chr1_2:19141081-19141100 None:intergenic 50.0%
CAAGCAGATGTGGTAGGAGT+AGG + chr1_2:19141195-19141214 None:intergenic 50.0%
CATACCTGATGGAACCATGG+TGG + chr1_2:19141250-19141269 None:intergenic 50.0%
TCGAGCCAATGATGCTTTGC+GGG + chr1_2:19141433-19141452 None:intergenic 50.0%
!! CCCTACAAAGCCGACTTGTA+AGG + chr1_2:19141770-19141789 None:intergenic 50.0%
! CGGCTTTGTAGGGTTGAGTT+AGG - chr1_2:19141777-19141796 Msa0061130:intron 50.0%
GTCAAGTTCATGGTGTGACG+AGG - chr1_2:19141881-19141900 Msa0061130:CDS 50.0%
!! CCCCACAAAACTGGCTTGTT+AGG + chr1_2:19141975-19141994 None:intergenic 50.0%
CCGATCGTTGGTACTGTTGC+TGG - chr1_2:19140272-19140291 Msa0061130:CDS 55.0%
AGTTGAGGAGCAGGTGCAGA+TGG + chr1_2:19140411-19140430 None:intergenic 55.0%
CAGGGCTCAACCTGAAGTTC+AGG - chr1_2:19140993-19141012 Msa0061130:intron 55.0%
CAGGGTGGTATGTCTACAGG+TGG + chr1_2:19141066-19141085 None:intergenic 55.0%
GAGCAGGGTGGTATGTCTAC+AGG + chr1_2:19141069-19141088 None:intergenic 55.0%
GTAGACATACCACCCTGCTC+TGG - chr1_2:19141069-19141088 Msa0061130:intron 55.0%
TCACATACTGGTCCACAGCC+AGG - chr1_2:19141117-19141136 Msa0061130:intron 55.0%
CACATACTGGTCCACAGCCA+GGG - chr1_2:19141118-19141137 Msa0061130:intron 55.0%
GCAACCACCATGGTTCCATC+AGG - chr1_2:19141243-19141262 Msa0061130:CDS 55.0%
AATGATGCTTTGCGGGCCTG+CGG + chr1_2:19141426-19141445 None:intergenic 55.0%
GGGGGGTTGAGTAGCTCGAT+TGG - chr1_2:19139319-19139338 Msa0061130:intron 60.0%
TCGTTGGACTCGAGCGTGAG+TGG - chr1_2:19139771-19139790 Msa0061130:intron 60.0%
GGACTCGAGCGTGAGTGGAT+AGG - chr1_2:19139776-19139795 Msa0061130:intron 60.0%
! CTGCTACTTGAGCCACTCCC+TGG + chr1_2:19141138-19141157 None:intergenic 60.0%
! GCAGGCCCGCAAAGCATCAT+TGG - chr1_2:19141425-19141444 Msa0061130:CDS 60.0%
ACTGGTCCACAGCCAGGGAG+TGG - chr1_2:19141123-19141142 Msa0061130:intron 65.0%
CTTGAGCCACTCCCTGGCTG+TGG + chr1_2:19141132-19141151 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 19138638 19142843 19138638 ID=Msa0061130;Name=Msa0061130
chr1_2 mRNA 19138638 19142843 19138638 ID=Msa0061130-mRNA-1;Parent=Msa0061130;Name=Msa0061130-mRNA-1;_AED=0.07;_eAED=0.07;_QI=141|1|1|1|1|1|7|509|361
chr1_2 exon 19138638 19139273 19138638 ID=Msa0061130-mRNA-1:exon:7427;Parent=Msa0061130-mRNA-1
chr1_2 exon 19140006 19140063 19140006 ID=Msa0061130-mRNA-1:exon:7426;Parent=Msa0061130-mRNA-1
chr1_2 exon 19140217 19140538 19140217 ID=Msa0061130-mRNA-1:exon:7425;Parent=Msa0061130-mRNA-1
chr1_2 exon 19140996 19141080 19140996 ID=Msa0061130-mRNA-1:exon:7424;Parent=Msa0061130-mRNA-1
chr1_2 exon 19141172 19141464 19141172 ID=Msa0061130-mRNA-1:exon:7423;Parent=Msa0061130-mRNA-1
chr1_2 exon 19141840 19141964 19141840 ID=Msa0061130-mRNA-1:exon:7422;Parent=Msa0061130-mRNA-1
chr1_2 exon 19142627 19142843 19142627 ID=Msa0061130-mRNA-1:exon:7421;Parent=Msa0061130-mRNA-1
chr1_2 five_prime_UTR 19142703 19142843 19142703 ID=Msa0061130-mRNA-1:five_prime_utr;Parent=Msa0061130-mRNA-1
chr1_2 CDS 19142627 19142702 19142627 ID=Msa0061130-mRNA-1:cds;Parent=Msa0061130-mRNA-1
chr1_2 CDS 19141840 19141964 19141840 ID=Msa0061130-mRNA-1:cds;Parent=Msa0061130-mRNA-1
chr1_2 CDS 19141172 19141464 19141172 ID=Msa0061130-mRNA-1:cds;Parent=Msa0061130-mRNA-1
chr1_2 CDS 19140996 19141080 19140996 ID=Msa0061130-mRNA-1:cds;Parent=Msa0061130-mRNA-1
chr1_2 CDS 19140217 19140538 19140217 ID=Msa0061130-mRNA-1:cds;Parent=Msa0061130-mRNA-1
chr1_2 CDS 19140006 19140063 19140006 ID=Msa0061130-mRNA-1:cds;Parent=Msa0061130-mRNA-1
chr1_2 CDS 19139147 19139273 19139147 ID=Msa0061130-mRNA-1:cds;Parent=Msa0061130-mRNA-1
chr1_2 three_prime_UTR 19138638 19139146 19138638 ID=Msa0061130-mRNA-1:three_prime_utr;Parent=Msa0061130-mRNA-1
Gene Sequence

>Msa0061130

ATGGAAAGAGATTTCTTGAGTCTTTGCTCAAAAGAATCATCACCTGAGATTAACAATGAAGGGTCAAAAAATTCAGGTTTTACGAATGTTTCAGCAGTAAAATGGCCCTTCTTGAACAAAGTCTCTGCTCATTCATATTTGACGCCTTTAAAAGTTTCTGAAGACGATAAGGCTAAAATGATATCTTCTGGTTTCATACAGAACTCTTTCAAACACGATGGACAAGGTGGTATTCATTTTTCTGTGAATCAGTATCCTGTACAACACAATGTGAATTTTATGAATCGTCATCATGATGTGAAGATGTTTCCAGTTTCCAATCAAGCAAATTCACTTTCTGCGGTACATCCGCTCCTAAAAAATCATCTTGTAACTTTTGGTCAGAATATGAACGGTGCTAATGCGAAGCAATCACTACTTGGTGGATCACCGCTTACAGCACCTCATTCAGTTCTTCCGATCGTTGGTACTGTTGCTGGTTTGGTTGAACCATGTGAGAAACCATCTGCACCTGCTCCTCAACTTACCATGTTTTATGGCGGTACTGTGAACATCTTCAATGATATCACTCCTGAGAAGGCACAAGCCATCATGTTGTTGGCTGGAAGTGGCTTATCTGCAGCTTCAAACAGGGCTCAACCTGAAGTTCAGGCATCTAGCTCGAAATTCGCATCAGGTGATGATGGTTTGCCTATAAGTCCACCTGTAGACATACCACCCTGCTCTGGTATTTCAAGTCCTTTATCTGTTTCTTCACATACTGGTCCACAGCCAGGGAGTGGCTCAAGTAGCAGTGATGAGTTTATGGCTGCTAAAACATCTAGAGGCCCTACTCCTACCACATCTGCTTGCAAACTAGTGACTCCCAAAGTAGTCAATGCAACCACCATGGTTCCATCAGCTATACCGCAGGCCCGCAAAGCATCATTGGCTCGATTTTTGGAGAAGCGCAAGGAAAGGGTGATGAGTACAGCACCATATAACCTCAACAAGAAATCTGAGGATGCACAAATGCCGAATTCAATAGGTGCTAACATCTCCGCGACCACTAGTACTGCTAATATGCCGGTAGCAAACCAAGGATAA

Protein sequence

>Msa0061130

MERDFLSLCSKESSPEINNEGSKNSGFTNVSAVKWPFLNKVSAHSYLTPLKVSEDDKAKMISSGFIQNSFKHDGQGGIHFSVNQYPVQHNVNFMNRHHDVKMFPVSNQANSLSAVHPLLKNHLVTFGQNMNGANAKQSLLGGSPLTAPHSVLPIVGTVAGLVEPCEKPSAPAPQLTMFYGGTVNIFNDITPEKAQAIMLLAGSGLSAASNRAQPEVQASSSKFASGDDGLPISPPVDIPPCSGISSPLSVSSHTGPQPGSGSSSSDEFMAAKTSRGPTPTTSACKLVTPKVVNATTMVPSAIPQARKASLARFLEKRKERVMSTAPYNLNKKSEDAQMPNSIGANISATTSTANMPVANQG*