Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477830 | XP_024633777.1 | 91.716 | 169 | 12 | 1 | 1 | 169 | 1 | 167 | 1.69e-107 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477830 | sp|Q9Y3E5|PTH2_HUMAN | 39.130 | 138 | 83 | 1 | 33 | 169 | 18 | 155 | 1.44e-25 | 100 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477830 | G7J3G3 | 92.899 | 169 | 12 | 0 | 1 | 169 | 1 | 169 | 6.07e-105 | 309 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027540 | Msa0477830 | 0.803858 | 2.851752e-49 | -8.615850e-47 |
| Msa0030730 | Msa0477830 | 0.808794 | 2.599144e-50 | -8.615850e-47 |
| Msa0032840 | Msa0477830 | -0.803423 | 3.511793e-49 | -8.615850e-47 |
| Msa0049650 | Msa0477830 | -0.804361 | 2.241620e-49 | -8.615850e-47 |
| Msa0173830 | Msa0477830 | 0.810472 | 1.133305e-50 | -8.615850e-47 |
| Msa0230550 | Msa0477830 | -0.809027 | 2.318139e-50 | -8.615850e-47 |
| Msa0238070 | Msa0477830 | -0.800456 | 1.429216e-48 | -8.615850e-47 |
| Msa0376510 | Msa0477830 | 0.834137 | 3.566951e-56 | -8.615850e-47 |
| Msa0383680 | Msa0477830 | 0.881473 | 2.331431e-70 | -8.615850e-47 |
| Msa0425050 | Msa0477830 | 0.830775 | 2.428057e-55 | -8.615850e-47 |
| Msa0430620 | Msa0477830 | 0.808530 | 2.960500e-50 | -8.615850e-47 |
| Msa0434050 | Msa0477830 | 0.805509 | 1.289835e-49 | -8.615850e-47 |
| Msa0477830 | Msa0484690 | 0.800169 | 1.634489e-48 | -8.615850e-47 |
| Msa0477830 | Msa0524120 | 0.816510 | 5.328756e-52 | -8.615850e-47 |
| Msa0477830 | Msa0577940 | -0.812401 | 4.318192e-51 | -8.615850e-47 |
| Msa0477830 | Msa0625530 | -0.815564 | 8.666355e-52 | -8.615850e-47 |
| Msa0477830 | Msa1058010 | 0.819721 | 1.000823e-52 | -8.615850e-47 |
| Msa0477830 | Msa1159990 | 0.816995 | 4.147083e-52 | -8.615850e-47 |
| Msa0477830 | Msa1171690 | 0.815112 | 1.092088e-51 | -8.615850e-47 |
| Msa0477830 | Msa1223840 | 0.800735 | 1.253542e-48 | -8.615850e-47 |
| Msa0477830 | Msa1288190 | 0.803949 | 2.730332e-49 | -8.615850e-47 |
| Msa0298940 | Msa0477830 | 0.803571 | 3.270891e-49 | -8.615850e-47 |
| Msa0298970 | Msa0477830 | 0.821308 | 4.326468e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477830 | MtrunA17_Chr3g0140251 | 95.122 | 164 | 8 | 0 | 1 | 164 | 1 | 164 | 1.44e-108 | 308 |
| Msa0477830 | MtrunA17_Chr4g0038421 | 45.161 | 93 | 51 | 0 | 77 | 169 | 75 | 167 | 6.25e-23 | 91.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477830 | AT4G32900.2 | 60.947 | 169 | 66 | 0 | 1 | 169 | 1 | 169 | 7.48e-72 | 216 |
| Msa0477830 | AT4G32900.3 | 62.195 | 164 | 62 | 0 | 1 | 164 | 1 | 164 | 1.47e-71 | 215 |
| Msa0477830 | AT4G32900.4 | 62.195 | 164 | 62 | 0 | 1 | 164 | 1 | 164 | 1.47e-71 | 215 |
| Msa0477830 | AT4G32900.1 | 60.714 | 140 | 55 | 0 | 1 | 140 | 1 | 140 | 1.25e-56 | 176 |
| Msa0477830 | AT5G16870.1 | 40.397 | 151 | 80 | 4 | 20 | 169 | 5 | 146 | 1.70e-26 | 100 |
| Msa0477830 | AT3G03010.3 | 48.387 | 93 | 48 | 0 | 77 | 169 | 64 | 156 | 4.12e-24 | 94.4 |
| Msa0477830 | AT3G03010.2 | 48.387 | 93 | 48 | 0 | 77 | 169 | 64 | 156 | 4.12e-24 | 94.4 |
| Msa0477830 | AT3G03010.1 | 48.387 | 93 | 48 | 0 | 77 | 169 | 64 | 156 | 4.12e-24 | 94.4 |
| Msa0477830 | AT3G03010.5 | 51.562 | 64 | 31 | 0 | 77 | 140 | 64 | 127 | 5.24e-17 | 75.1 |
| Msa0477830 | AT3G03010.4 | 51.562 | 64 | 31 | 0 | 77 | 140 | 64 | 127 | 5.24e-17 | 75.1 |
Find 60 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCAAGTCACAACAATTT+TGG | 0.072538 | 3_3:-82283744 | None:intergenic |
| TTCAGGGCCAAAAGCAATTC+TGG | 0.238209 | 3_3:+82284580 | Msa0477830:intron |
| TGCTGATCAAGAACTTAAAA+TGG | 0.256898 | 3_3:+82282481 | Msa0477830:CDS |
| ACCCAGTATCTGTCATCTTC+AGG | 0.301904 | 3_3:+82284386 | Msa0477830:intron |
| TCTTTCCAGATTTCATCTTT+AGG | 0.306077 | 3_3:-82283051 | None:intergenic |
| TGTATCAGGTTCTGGTTGTT+AGG | 0.313277 | 3_3:+82283023 | Msa0477830:intron |
| GTTAACCTATGGTCTGTCTT+CGG | 0.322394 | 3_3:+82284684 | Msa0477830:three_prime_UTR |
| TTAACCTATGGTCTGTCTTC+GGG | 0.327219 | 3_3:+82284685 | Msa0477830:three_prime_UTR |
| TGCTATGTTCTTATCCGGTT+TGG | 0.334810 | 3_3:-82282045 | None:intergenic |
| ACCGAATCCAGAATTGCTTT+TGG | 0.356047 | 3_3:-82284587 | None:intergenic |
| AGGAAGCAGCTGAGGGTATT+GGG | 0.357565 | 3_3:+82283874 | Msa0477830:CDS |
| CTTGTCATTGGTTTCATTTG+TGG | 0.367500 | 3_3:+82282359 | Msa0477830:CDS |
| CAAAAGGGAGAATGGTTATC+AGG | 0.368060 | 3_3:+82282305 | Msa0477830:CDS |
| TTCATTCCAGGTCTTGTCAT+TGG | 0.373028 | 3_3:+82282347 | Msa0477830:CDS |
| AAGGAAGCAGCTGAGGGTAT+TGG | 0.388038 | 3_3:+82283873 | Msa0477830:CDS |
| CAAGACCTAAAGATGAAATC+TGG | 0.399487 | 3_3:+82283046 | Msa0477830:CDS |
| TCAACTGCTATGTTCTTATC+CGG | 0.400726 | 3_3:-82282050 | None:intergenic |
| GCAATTCTGGATTCGGTGAC+TGG | 0.400755 | 3_3:+82284593 | Msa0477830:CDS |
| AAGCCAGAGAATTTCATTCC+AGG | 0.410494 | 3_3:+82282335 | Msa0477830:CDS |
| CAACTCTCTGTCTCAACTAA+TGG | 0.417851 | 3_3:+82282458 | Msa0477830:CDS |
| TCAAAGACTGTTCTTGCTGT+TGG | 0.433145 | 3_3:+82284420 | Msa0477830:CDS |
| GAAACAACAAGAAAAGCAAA+AGG | 0.436943 | 3_3:+82282289 | Msa0477830:intron |
| GCCAAAAGCAATTCTGGATT+CGG | 0.450419 | 3_3:+82284586 | Msa0477830:CDS |
| TTGGATAAGTGATTTCTAGT+TGG | 0.453255 | 3_3:-82282404 | None:intergenic |
| AGCCAGGCTTTGTTAACCTA+TGG | 0.473264 | 3_3:+82284673 | Msa0477830:three_prime_UTR |
| CCCAATGTCTTAAAAGAGAC+CGG | 0.478499 | 3_3:-82283706 | None:intergenic |
| AGACCTGGAATGAAATTCTC+TGG | 0.481100 | 3_3:-82282338 | None:intergenic |
| CAACCTAAAATCCACCGAAC+AGG | 0.481970 | 3_3:+82282114 | Msa0477830:CDS |
| GTTATTGAAGAATACCTGTT+CGG | 0.492171 | 3_3:-82282128 | None:intergenic |
| TGTCATCTTCAGGTTTCAGC+AGG | 0.498407 | 3_3:+82284396 | Msa0477830:CDS |
| CATCTGCTTACATTTCCTGT+TGG | 0.505133 | 3_3:-82283769 | None:intergenic |
| GGATTCGGTGACTGGAAGGT+TGG | 0.507459 | 3_3:+82284601 | Msa0477830:CDS |
| TGTGACTTGCAAGAACCAAC+AGG | 0.509191 | 3_3:+82283754 | Msa0477830:CDS |
| AAGAAAAGCAAAAGGGAGAA+TGG | 0.509470 | 3_3:+82282297 | Msa0477830:CDS |
| GACCATAGGTTAACAAAGCC+TGG | 0.510702 | 3_3:-82284675 | None:intergenic |
| CTGGCTGATTTATCACGCTA+TGG | 0.514136 | 3_3:-82284656 | None:intergenic |
| ACTGTTCTTGCTGTTGGACC+TGG | 0.520353 | 3_3:+82284426 | Msa0477830:CDS |
| CCCGCAAAACAAACAAATTG+AGG | 0.521145 | 3_3:-82282009 | None:intergenic |
| AAACAACAAGAAAAGCAAAA+GGG | 0.522970 | 3_3:+82282290 | Msa0477830:CDS |
| TACCTGTGTTCGTCCTGCAT+CGG | 0.526970 | 3_3:-82283916 | None:intergenic |
| TTCTGGATTCGGTGACTGGA+AGG | 0.541644 | 3_3:+82284597 | Msa0477830:CDS |
| TCAAAATTAATTTCAACGCA+AGG | 0.544145 | 3_3:+82282081 | Msa0477830:five_prime_UTR |
| GCATCGGAGACAGCAAAAGT+AGG | 0.545660 | 3_3:-82283900 | None:intergenic |
| GCATGCTTCAGTGACCAAAC+CGG | 0.551324 | 3_3:+82282031 | Msa0477830:five_prime_UTR |
| TGTATGGCAGATGCTGCCAC+CGG | 0.557778 | 3_3:+82283223 | Msa0477830:intron |
| CATCGGAGACAGCAAAAGTA+GGG | 0.562651 | 3_3:-82283899 | None:intergenic |
| AACATGTTGTTACTTATACA+AGG | 0.564493 | 3_3:+82284789 | Msa0477830:three_prime_UTR |
| ATGAAACCAATGACAAGACC+TGG | 0.577308 | 3_3:-82282353 | None:intergenic |
| TAAGCTCAAGGAAGCAGCTG+AGG | 0.585263 | 3_3:+82283866 | Msa0477830:CDS |
| ATTGAAGAATACCTGTTCGG+TGG | 0.590827 | 3_3:-82282125 | None:intergenic |
| TTTGATCAGGAATAAGCTCA+AGG | 0.591705 | 3_3:+82283854 | Msa0477830:intron |
| CTCCGATGCAGGACGAACAC+AGG | 0.604328 | 3_3:+82283914 | Msa0477830:CDS |
| CGTTAATTCAGCATACATGC+CGG | 0.627029 | 3_3:-82283242 | None:intergenic |
| CATAGCGTGATAAATCAGCC+AGG | 0.628311 | 3_3:+82284657 | Msa0477830:exon |
| CATTAGTTGAGACAGAGAGT+TGG | 0.635902 | 3_3:-82282457 | None:intergenic |
| AAGCTCAAGGAAGCAGCTGA+GGG | 0.642971 | 3_3:+82283867 | Msa0477830:CDS |
| CGTGCCCGAAGACAGACCAT+AGG | 0.671292 | 3_3:-82284689 | None:intergenic |
| TAATTCAGCATACATGCCGG+TGG | 0.683317 | 3_3:-82283239 | None:intergenic |
| TGTATGCTGAATTAACGCGA+AGG | 0.695292 | 3_3:+82283248 | Msa0477830:CDS |
| TTAAGACATTGGGAACAGTG+CGG | 0.729788 | 3_3:+82283716 | Msa0477830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTATTCATTAAAATAATT+GGG | - | chr3_3:82282250-82282269 | None:intergenic | 10.0% |
| !! | ATACTATTCATTAAAATAAT+TGG | - | chr3_3:82282251-82282270 | None:intergenic | 10.0% |
| !! | TTCAACTTATTTAAAAAAAA+TGG | - | chr3_3:82282834-82282853 | None:intergenic | 10.0% |
| !!! | GTATTTTATAAAATTGTTAC+CGG | - | chr3_3:82282632-82282651 | None:intergenic | 15.0% |
| !!! | TCAATTCAATTCAATGTTTT+AGG | + | chr3_3:82282216-82282235 | Msa0477830:intron | 20.0% |
| !!! | CAATTCAATTCAATGTTTTA+GGG | + | chr3_3:82282217-82282236 | Msa0477830:intron | 20.0% |
| !! | ATTCATTAAAATAATTGGGT+TGG | - | chr3_3:82282246-82282265 | None:intergenic | 20.0% |
| !! | AACAACAAATGTTTATTCAA+AGG | - | chr3_3:82282735-82282754 | None:intergenic | 20.0% |
| !!! | TCTATTTTACAAATGTTATG+AGG | + | chr3_3:82282912-82282931 | Msa0477830:intron | 20.0% |
| !! | AAATGTAAAATGTTTGTATC+AGG | + | chr3_3:82283009-82283028 | Msa0477830:intron | 20.0% |
| !! | AAAAACATATATCCATGTAA+AGG | - | chr3_3:82283203-82283222 | None:intergenic | 20.0% |
| !!! | ATGGATATATGTTTTTTGTA+TGG | + | chr3_3:82283207-82283226 | Msa0477830:intron | 20.0% |
| !!! | CTATAACACAATCTTTTTAA+CGG | - | chr3_3:82283338-82283357 | None:intergenic | 20.0% |
| !!! | CAAATTTTGTACAGAAAAAA+GGG | - | chr3_3:82283436-82283455 | None:intergenic | 20.0% |
| !! | AATAATATCGAATTTCATTC+AGG | + | chr3_3:82283615-82283634 | Msa0477830:intron | 20.0% |
| !!! | CAGTATTGTAAATATACTTT+TGG | + | chr3_3:82283804-82283823 | Msa0477830:intron | 20.0% |
| ! | TCAAAATTAATTTCAACGCA+AGG | + | chr3_3:82282081-82282100 | Msa0477830:five_prime_UTR | 25.0% |
| ! | TAATAATACCCATTTGGATT+TGG | - | chr3_3:82282163-82282182 | None:intergenic | 25.0% |
| !! | ATTTTCAGAATTAAGCAGAA+AGG | - | chr3_3:82282190-82282209 | None:intergenic | 25.0% |
| ! | AAACAACAAGAAAAGCAAAA+GGG | + | chr3_3:82282290-82282309 | Msa0477830:CDS | 25.0% |
| ! | TCTTTGCATTTAATTAAAGC+CGG | - | chr3_3:82282539-82282558 | None:intergenic | 25.0% |
| ! | ATAGTTTACAACAGAATAAC+AGG | - | chr3_3:82282580-82282599 | None:intergenic | 25.0% |
| !! | ATTTTACAAATGTTATGAGG+AGG | + | chr3_3:82282915-82282934 | Msa0477830:intron | 25.0% |
| !! | TTTTACAAATGTTATGAGGA+GGG | + | chr3_3:82282916-82282935 | Msa0477830:intron | 25.0% |
| ! | ATAAAGAACAGATCTAGAAA+CGG | - | chr3_3:82283120-82283139 | None:intergenic | 25.0% |
| ! | TGTCTATTACAAACTCTATT+AGG | + | chr3_3:82283146-82283165 | Msa0477830:intron | 25.0% |
| ! | GAAAAAAGGGATTATATGAA+TGG | - | chr3_3:82283423-82283442 | None:intergenic | 25.0% |
| !! | GCAAATTTTGTACAGAAAAA+AGG | - | chr3_3:82283437-82283456 | None:intergenic | 25.0% |
| !!! | TACAAAATTTGCTATAGTGA+AGG | + | chr3_3:82283445-82283464 | Msa0477830:intron | 25.0% |
| !!! | TTTTTGGTTGTTATCCTTAT+TGG | + | chr3_3:82283646-82283665 | Msa0477830:intron | 25.0% |
| ! | GGTAATAATGCTTTGATATA+TGG | + | chr3_3:82283935-82283954 | Msa0477830:intron | 25.0% |
| !! | CTATGTGATAAGAGTTTTTA+AGG | - | chr3_3:82283983-82284002 | None:intergenic | 25.0% |
| !!! | GAAATTAGTTGGTTAGTTTT+GGG | + | chr3_3:82284242-82284261 | Msa0477830:intron | 25.0% |
| ! | TGAATATCCTGTTAAAAATC+TGG | - | chr3_3:82284322-82284341 | None:intergenic | 25.0% |
| !!! | AATTTTAGTATCTGCTAACT+AGG | + | chr3_3:82284728-82284747 | Msa0477830:three_prime_UTR | 25.0% |
| !!! | ATTTTAGTATCTGCTAACTA+GGG | + | chr3_3:82284729-82284748 | Msa0477830:three_prime_UTR | 25.0% |
| !! | AACATGTTGTTACTTATACA+AGG | + | chr3_3:82284789-82284808 | Msa0477830:three_prime_UTR | 25.0% |
| !!! | TCCTCAATTTGTTTGTTTTG+CGG | + | chr3_3:82282008-82282027 | Msa0477830:five_prime_UTR | 30.0% |
| GTTATTGAAGAATACCTGTT+CGG | - | chr3_3:82282131-82282150 | None:intergenic | 30.0% | |
| AAACATGTTCCAAATCCAAA+TGG | + | chr3_3:82282151-82282170 | Msa0477830:intron | 30.0% | |
| AACATGTTCCAAATCCAAAT+GGG | + | chr3_3:82282152-82282171 | Msa0477830:intron | 30.0% | |
| GGCTAATAATAATACCCATT+TGG | - | chr3_3:82282169-82282188 | None:intergenic | 30.0% | |
| GAAACAACAAGAAAAGCAAA+AGG | + | chr3_3:82282289-82282308 | Msa0477830:intron | 30.0% | |
| !! | TTGGATAAGTGATTTCTAGT+TGG | - | chr3_3:82282407-82282426 | None:intergenic | 30.0% |
| TGCTGATCAAGAACTTAAAA+TGG | + | chr3_3:82282481-82282500 | Msa0477830:CDS | 30.0% | |
| TTCATCACTTTCTCATACTA+TGG | + | chr3_3:82282513-82282532 | Msa0477830:intron | 30.0% | |
| TAAATGAGCCAATAACAGAT+TGG | - | chr3_3:82282673-82282692 | None:intergenic | 30.0% | |
| !!! | TCAGTAGTTTTAGCTCTAAT+AGG | - | chr3_3:82282761-82282780 | None:intergenic | 30.0% |
| TTTACAAATGTTATGAGGAG+GGG | + | chr3_3:82282917-82282936 | Msa0477830:intron | 30.0% | |
| AAAATGTTTGTATCAGGTTC+TGG | + | chr3_3:82283015-82283034 | Msa0477830:intron | 30.0% | |
| TCTTTCCAGATTTCATCTTT+AGG | - | chr3_3:82283054-82283073 | None:intergenic | 30.0% | |
| AGGCTAGTATACTAAAAAGA+TGG | - | chr3_3:82283177-82283196 | None:intergenic | 30.0% | |
| ! | TTTTATCATGAAACCGATGT+TGG | - | chr3_3:82283292-82283311 | None:intergenic | 30.0% |
| ! | TTCCTTTACATCTAAAGCAA+AGG | + | chr3_3:82283475-82283494 | Msa0477830:intron | 30.0% |
| !!! | CATTCAGGCAACATATTTTT+TGG | + | chr3_3:82283630-82283649 | Msa0477830:intron | 30.0% |
| ! | TTGCAAGTCACAACAATTTT+GGG | - | chr3_3:82283746-82283765 | None:intergenic | 30.0% |
| TAATGCTTTGATATATGGCT+AGG | + | chr3_3:82283940-82283959 | Msa0477830:intron | 30.0% | |
| !!! | GACTATTTTTGTCTTCTGTT+AGG | + | chr3_3:82284096-82284115 | Msa0477830:intron | 30.0% |
| TAGGAAAGCTTACATCAAAT+AGG | + | chr3_3:82284132-82284151 | Msa0477830:intron | 30.0% | |
| ATTTGCAGCAAATTAACCAA+CGG | - | chr3_3:82284201-82284220 | None:intergenic | 30.0% | |
| !! | GTTAATTTGCTGCAAATAGA+GGG | + | chr3_3:82284204-82284223 | Msa0477830:intron | 30.0% |
| !! | TTAATTTGCTGCAAATAGAG+GGG | + | chr3_3:82284205-82284224 | Msa0477830:intron | 30.0% |
| !!! | GGAAATTAGTTGGTTAGTTT+TGG | + | chr3_3:82284241-82284260 | Msa0477830:intron | 30.0% |
| CTGTTAAAAATCTGGATCAA+TGG | - | chr3_3:82284314-82284333 | None:intergenic | 30.0% | |
| ! | CATTGATCCAGATTTTTAAC+AGG | + | chr3_3:82284312-82284331 | Msa0477830:intron | 30.0% |
| TCAAAATACTTACGTATGAC+AGG | + | chr3_3:82284530-82284549 | Msa0477830:intron | 30.0% | |
| ! | TTTTAGTATCTGCTAACTAG+GGG | + | chr3_3:82284730-82284749 | Msa0477830:three_prime_UTR | 30.0% |
| !! | TCAATAGAGCACTCTATTTT+TGG | + | chr3_3:82284753-82284772 | Msa0477830:three_prime_UTR | 30.0% |
| !!! | CCTCAATTTGTTTGTTTTGC+GGG | + | chr3_3:82282009-82282028 | Msa0477830:five_prime_UTR | 35.0% |
| TCAACTGCTATGTTCTTATC+CGG | - | chr3_3:82282053-82282072 | None:intergenic | 35.0% | |
| AAGAAAAGCAAAAGGGAGAA+TGG | + | chr3_3:82282297-82282316 | Msa0477830:CDS | 35.0% | |
| !! | CTTGTCATTGGTTTCATTTG+TGG | + | chr3_3:82282359-82282378 | Msa0477830:CDS | 35.0% |
| ! | GGTGGATGAGAATATTTTGT+TGG | - | chr3_3:82282426-82282445 | None:intergenic | 35.0% |
| AGTTTCTGCCAATCTGTTAT+TGG | + | chr3_3:82282662-82282681 | Msa0477830:intron | 35.0% | |
| !! | CTGTTATTGGCTCATTTAGA+AGG | + | chr3_3:82282675-82282694 | Msa0477830:intron | 35.0% |
| TTACAAATGTTATGAGGAGG+GGG | + | chr3_3:82282918-82282937 | Msa0477830:intron | 35.0% | |
| TCCAGTAAAAGAAGTTCGTA+GGG | - | chr3_3:82282968-82282987 | None:intergenic | 35.0% | |
| ATCCAGTAAAAGAAGTTCGT+AGG | - | chr3_3:82282969-82282988 | None:intergenic | 35.0% | |
| CAAGACCTAAAGATGAAATC+TGG | + | chr3_3:82283046-82283065 | Msa0477830:CDS | 35.0% | |
| AGATCTAGAAACGGAACAAT+AGG | - | chr3_3:82283111-82283130 | None:intergenic | 35.0% | |
| ! | ATATATCCATGTAAAGGCAC+AGG | - | chr3_3:82283197-82283216 | None:intergenic | 35.0% |
| ! | TTGTAAGCACTGTGTGATAA+CGG | + | chr3_3:82283378-82283397 | Msa0477830:intron | 35.0% |
| ! | TGCCTTTGCTTTAGATGTAA+AGG | - | chr3_3:82283480-82283499 | None:intergenic | 35.0% |
| GGAGCTTATTATAGCCAATA+AGG | - | chr3_3:82283663-82283682 | None:intergenic | 35.0% | |
| !! | ACTGCAAAAGTATTCAGCAA+TGG | - | chr3_3:82283684-82283703 | None:intergenic | 35.0% |
| ! | CTGAATACTTTTGCAGTAAC+CGG | + | chr3_3:82283687-82283706 | Msa0477830:intron | 35.0% |
| ! | CTTGCAAGTCACAACAATTT+TGG | - | chr3_3:82283747-82283766 | None:intergenic | 35.0% |
| CTTATTCCTGATCAAAATCC+AGG | - | chr3_3:82283850-82283869 | None:intergenic | 35.0% | |
| TTTGATCAGGAATAAGCTCA+AGG | + | chr3_3:82283854-82283873 | Msa0477830:intron | 35.0% | |
| TTCTTAGGAATGCATGTTGA+AGG | + | chr3_3:82284043-82284062 | Msa0477830:intron | 35.0% | |
| TCTTAGGAATGCATGTTGAA+GGG | + | chr3_3:82284044-82284063 | Msa0477830:intron | 35.0% | |
| ! | AATAGTCTCTAAAGAGTGTG+AGG | - | chr3_3:82284083-82284102 | None:intergenic | 35.0% |
| GATGTAAGCTTTCCTAGTTA+AGG | - | chr3_3:82284128-82284147 | None:intergenic | 35.0% | |
| !! | GGTTAATTTGCTGCAAATAG+AGG | + | chr3_3:82284203-82284222 | Msa0477830:intron | 35.0% |
| CGAAAGAAAGGGAAATTAGT+TGG | + | chr3_3:82284231-82284250 | Msa0477830:intron | 35.0% | |
| !!! | ATTAGTTGGTTAGTTTTGGG+TGG | + | chr3_3:82284245-82284264 | Msa0477830:intron | 35.0% |
| !!! | TTAGTTGGTTAGTTTTGGGT+GGG | + | chr3_3:82284246-82284265 | Msa0477830:intron | 35.0% |
| AATCTGGATCAATGGAACAT+TGG | - | chr3_3:82284306-82284325 | None:intergenic | 35.0% | |
| !! | GTTCTTGACTTGCTTTATGT+TGG | + | chr3_3:82284467-82284486 | Msa0477830:intron | 35.0% |
| CCCGCAAAACAAACAAATTG+AGG | - | chr3_3:82282012-82282031 | None:intergenic | 40.0% | |
| TGCTATGTTCTTATCCGGTT+TGG | - | chr3_3:82282048-82282067 | None:intergenic | 40.0% | |
| !! | ATACCTGTTCGGTGGATTTT+AGG | - | chr3_3:82282120-82282139 | None:intergenic | 40.0% |
| ATTGAAGAATACCTGTTCGG+TGG | - | chr3_3:82282128-82282147 | None:intergenic | 40.0% | |
| CAAAAGGGAGAATGGTTATC+AGG | + | chr3_3:82282305-82282324 | Msa0477830:CDS | 40.0% | |
| AAGCCAGAGAATTTCATTCC+AGG | + | chr3_3:82282335-82282354 | Msa0477830:CDS | 40.0% | |
| AGACCTGGAATGAAATTCTC+TGG | - | chr3_3:82282341-82282360 | None:intergenic | 40.0% | |
| ! | TTCATTCCAGGTCTTGTCAT+TGG | + | chr3_3:82282347-82282366 | Msa0477830:CDS | 40.0% |
| ATGAAACCAATGACAAGACC+TGG | - | chr3_3:82282356-82282375 | None:intergenic | 40.0% | |
| !!! | AGAGAGTTGGTTTTGAAGCT+TGG | - | chr3_3:82282447-82282466 | None:intergenic | 40.0% |
| CATTAGTTGAGACAGAGAGT+TGG | - | chr3_3:82282460-82282479 | None:intergenic | 40.0% | |
| CAACTCTCTGTCTCAACTAA+TGG | + | chr3_3:82282458-82282477 | Msa0477830:CDS | 40.0% | |
| TCACTTTCTCATACTATGGC+CGG | + | chr3_3:82282517-82282536 | Msa0477830:intron | 40.0% | |
| TACAAATGTTATGAGGAGGG+GGG | + | chr3_3:82282919-82282938 | Msa0477830:intron | 40.0% | |
| ! | TCCCTACGAACTTCTTTTAC+TGG | + | chr3_3:82282964-82282983 | Msa0477830:intron | 40.0% |
| ! | TGTATCAGGTTCTGGTTGTT+AGG | + | chr3_3:82283023-82283042 | Msa0477830:intron | 40.0% |
| CGTTAATTCAGCATACATGC+CGG | - | chr3_3:82283245-82283264 | None:intergenic | 40.0% | |
| TGTATGCTGAATTAACGCGA+AGG | + | chr3_3:82283248-82283267 | Msa0477830:CDS | 40.0% | |
| ATCATGAAACCGATGTTGGT+AGG | - | chr3_3:82283288-82283307 | None:intergenic | 40.0% | |
| !!! | ACCGGTCTCTTTTAAGACAT+TGG | + | chr3_3:82283705-82283724 | Msa0477830:CDS | 40.0% |
| CCCAATGTCTTAAAAGAGAC+CGG | - | chr3_3:82283709-82283728 | None:intergenic | 40.0% | |
| !!! | CCGGTCTCTTTTAAGACATT+GGG | + | chr3_3:82283706-82283725 | Msa0477830:CDS | 40.0% |
| TTAAGACATTGGGAACAGTG+CGG | + | chr3_3:82283716-82283735 | Msa0477830:CDS | 40.0% | |
| ! | AAGTCACAACAATTTTGGGC+TGG | - | chr3_3:82283742-82283761 | None:intergenic | 40.0% |
| CATCTGCTTACATTTCCTGT+TGG | - | chr3_3:82283772-82283791 | None:intergenic | 40.0% | |
| ACTGCTAATCGCAACTTCTT+AGG | + | chr3_3:82284028-82284047 | Msa0477830:intron | 40.0% | |
| GAGTGTGAGGAGATGAAATT+CGG | - | chr3_3:82284070-82284089 | None:intergenic | 40.0% | |
| GTTAGGAACATGCCTTAACT+AGG | + | chr3_3:82284113-82284132 | Msa0477830:intron | 40.0% | |
| AAATAGGCCAAGCAATCAAG+TGG | + | chr3_3:82284148-82284167 | Msa0477830:intron | 40.0% | |
| AATAGGCCAAGCAATCAAGT+GGG | + | chr3_3:82284149-82284168 | Msa0477830:intron | 40.0% | |
| ACCTGAAGATGACAGATACT+GGG | - | chr3_3:82284390-82284409 | None:intergenic | 40.0% | |
| AACCTGAAGATGACAGATAC+TGG | - | chr3_3:82284391-82284410 | None:intergenic | 40.0% | |
| ! | TCAAAGACTGTTCTTGCTGT+TGG | + | chr3_3:82284420-82284439 | Msa0477830:CDS | 40.0% |
| AAAGCAACACAAAGCTAACC+AGG | - | chr3_3:82284447-82284466 | None:intergenic | 40.0% | |
| GATGTTCATGCACATGCTAT+TGG | - | chr3_3:82284512-82284531 | None:intergenic | 40.0% | |
| GGATTTGAATGTTGCTCTCT+TGG | + | chr3_3:82284551-82284570 | Msa0477830:intron | 40.0% | |
| ! | TGCTCTCTTGGATTTGTTTC+AGG | + | chr3_3:82284563-82284582 | Msa0477830:intron | 40.0% |
| ! | GCTCTCTTGGATTTGTTTCA+GGG | + | chr3_3:82284564-82284583 | Msa0477830:intron | 40.0% |
| GCCAAAAGCAATTCTGGATT+CGG | + | chr3_3:82284586-82284605 | Msa0477830:CDS | 40.0% | |
| ! | ACCGAATCCAGAATTGCTTT+TGG | - | chr3_3:82284590-82284609 | None:intergenic | 40.0% |
| GTTAACCTATGGTCTGTCTT+CGG | + | chr3_3:82284684-82284703 | Msa0477830:three_prime_UTR | 40.0% | |
| TTAACCTATGGTCTGTCTTC+GGG | + | chr3_3:82284685-82284704 | Msa0477830:three_prime_UTR | 40.0% | |
| !! | CTGTTCGGTGGATTTTAGGT+TGG | - | chr3_3:82282116-82282135 | None:intergenic | 45.0% |
| CAACCTAAAATCCACCGAAC+AGG | + | chr3_3:82282114-82282133 | Msa0477830:CDS | 45.0% | |
| !!! | GAGTTGGTTTTGAAGCTTGG+TGG | - | chr3_3:82282444-82282463 | None:intergenic | 45.0% |
| AAGCCAACACAACACCTACA+CGG | + | chr3_3:82282601-82282620 | Msa0477830:intron | 45.0% | |
| ACAAATGTTATGAGGAGGGG+GGG | + | chr3_3:82282920-82282939 | Msa0477830:intron | 45.0% | |
| ! | TACTAGCCTGTGCCTTTACA+TGG | + | chr3_3:82283188-82283207 | Msa0477830:intron | 45.0% |
| TAATTCAGCATACATGCCGG+TGG | - | chr3_3:82283242-82283261 | None:intergenic | 45.0% | |
| ACCAATCCACCTACCAACAT+CGG | + | chr3_3:82283276-82283295 | Msa0477830:intron | 45.0% | |
| ! | ATGAAACCGATGTTGGTAGG+TGG | - | chr3_3:82283285-82283304 | None:intergenic | 45.0% |
| ! | TGTGACTTGCAAGAACCAAC+AGG | + | chr3_3:82283754-82283773 | Msa0477830:CDS | 45.0% |
| !! | TCCTGACCTGGATTTTGATC+AGG | + | chr3_3:82283841-82283860 | Msa0477830:intron | 45.0% |
| TCCTGATCAAAATCCAGGTC+AGG | - | chr3_3:82283845-82283864 | None:intergenic | 45.0% | |
| CATCGGAGACAGCAAAAGTA+GGG | - | chr3_3:82283902-82283921 | None:intergenic | 45.0% | |
| ATAGGCCAAGCAATCAAGTG+GGG | + | chr3_3:82284150-82284169 | Msa0477830:intron | 45.0% | |
| ! | TGCTGTTATTTACGCACCGT+TGG | + | chr3_3:82284182-82284201 | Msa0477830:intron | 45.0% |
| AGACCAAGCTGTTGAACTCA+TGG | + | chr3_3:82284271-82284290 | Msa0477830:intron | 45.0% | |
| GACCAAGCTGTTGAACTCAT+GGG | + | chr3_3:82284272-82284291 | Msa0477830:intron | 45.0% | |
| ACCCAGTATCTGTCATCTTC+AGG | + | chr3_3:82284386-82284405 | Msa0477830:intron | 45.0% | |
| ! | TGTCATCTTCAGGTTTCAGC+AGG | + | chr3_3:82284396-82284415 | Msa0477830:CDS | 45.0% |
| TTCAGGGCCAAAAGCAATTC+TGG | + | chr3_3:82284580-82284599 | Msa0477830:intron | 45.0% | |
| ! | CTGGCTGATTTATCACGCTA+TGG | - | chr3_3:82284659-82284678 | None:intergenic | 45.0% |
| CATAGCGTGATAAATCAGCC+AGG | + | chr3_3:82284657-82284676 | Msa0477830:exon | 45.0% | |
| !! | AGCCAGGCTTTGTTAACCTA+TGG | + | chr3_3:82284673-82284692 | Msa0477830:three_prime_UTR | 45.0% |
| GACCATAGGTTAACAAAGCC+TGG | - | chr3_3:82284678-82284697 | None:intergenic | 45.0% | |
| GCATGCTTCAGTGACCAAAC+CGG | + | chr3_3:82282031-82282050 | Msa0477830:five_prime_UTR | 50.0% | |
| ! | TAGCCGTGTAGGTGTTGTGT+TGG | - | chr3_3:82282607-82282626 | None:intergenic | 50.0% |
| ! | ACCGATGTTGGTAGGTGGAT+TGG | - | chr3_3:82283280-82283299 | None:intergenic | 50.0% |
| CAGAGACATGAATCCTGACC+TGG | + | chr3_3:82283829-82283848 | Msa0477830:intron | 50.0% | |
| TAAGCTCAAGGAAGCAGCTG+AGG | + | chr3_3:82283866-82283885 | Msa0477830:CDS | 50.0% | |
| AAGCTCAAGGAAGCAGCTGA+GGG | + | chr3_3:82283867-82283886 | Msa0477830:CDS | 50.0% | |
| ! | AAGGAAGCAGCTGAGGGTAT+TGG | + | chr3_3:82283873-82283892 | Msa0477830:CDS | 50.0% |
| !! | AGGAAGCAGCTGAGGGTATT+GGG | + | chr3_3:82283874-82283893 | Msa0477830:CDS | 50.0% |
| GCATCGGAGACAGCAAAAGT+AGG | - | chr3_3:82283903-82283922 | None:intergenic | 50.0% | |
| !! | ACTTTTGCTGTCTCCGATGC+AGG | + | chr3_3:82283903-82283922 | Msa0477830:CDS | 50.0% |
| TACCTGTGTTCGTCCTGCAT+CGG | - | chr3_3:82283919-82283938 | None:intergenic | 50.0% | |
| GCTAACCCCACTTGATTGCT+TGG | - | chr3_3:82284158-82284177 | None:intergenic | 50.0% | |
| ATAGAGGGGCAGCGAAAGAA+AGG | + | chr3_3:82284219-82284238 | Msa0477830:intron | 50.0% | |
| TAGAGGGGCAGCGAAAGAAA+GGG | + | chr3_3:82284220-82284239 | Msa0477830:intron | 50.0% | |
| CTCCCATGAGTTCAACAGCT+TGG | - | chr3_3:82284277-82284296 | None:intergenic | 50.0% | |
| !! | ACTGTTCTTGCTGTTGGACC+TGG | + | chr3_3:82284426-82284445 | Msa0477830:CDS | 50.0% |
| !! | GCAATTCTGGATTCGGTGAC+TGG | + | chr3_3:82284593-82284612 | Msa0477830:CDS | 50.0% |
| !! | TTCTGGATTCGGTGACTGGA+AGG | + | chr3_3:82284597-82284616 | Msa0477830:CDS | 50.0% |
| CAACACCTACACGGCTACAC+CGG | + | chr3_3:82282610-82282629 | Msa0477830:intron | 55.0% | |
| TGTTACCGGTGTAGCCGTGT+AGG | - | chr3_3:82282618-82282637 | None:intergenic | 55.0% | |
| TGTATGGCAGATGCTGCCAC+CGG | + | chr3_3:82283223-82283242 | Msa0477830:intron | 55.0% | |
| !! | GGATTCGGTGACTGGAAGGT+TGG | + | chr3_3:82284601-82284620 | Msa0477830:CDS | 55.0% |
| CTCCGATGCAGGACGAACAC+AGG | + | chr3_3:82283914-82283933 | Msa0477830:CDS | 60.0% | |
| CGTGCCCGAAGACAGACCAT+AGG | - | chr3_3:82284692-82284711 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 82281991 | 82284823 | 82281991 | ID=Msa0477830;Name=Msa0477830 |
| chr3_3 | mRNA | 82281991 | 82284823 | 82281991 | ID=Msa0477830-mRNA-1;Parent=Msa0477830;Name=Msa0477830-mRNA-1;_AED=0.22;_eAED=0.22;_QI=115|0.85|0.87|1|0.85|0.87|8|157|209 |
| chr3_3 | exon | 82281991 | 82282135 | 82281991 | ID=Msa0477830-mRNA-1:exon:22873;Parent=Msa0477830-mRNA-1 |
| chr3_3 | exon | 82282290 | 82282502 | 82282290 | ID=Msa0477830-mRNA-1:exon:22874;Parent=Msa0477830-mRNA-1 |
| chr3_3 | exon | 82283031 | 82283091 | 82283031 | ID=Msa0477830-mRNA-1:exon:22875;Parent=Msa0477830-mRNA-1 |
| chr3_3 | exon | 82283233 | 82283269 | 82283233 | ID=Msa0477830-mRNA-1:exon:22876;Parent=Msa0477830-mRNA-1 |
| chr3_3 | exon | 82283703 | 82283780 | 82283703 | ID=Msa0477830-mRNA-1:exon:22877;Parent=Msa0477830-mRNA-1 |
| chr3_3 | exon | 82283863 | 82283935 | 82283863 | ID=Msa0477830-mRNA-1:exon:22878;Parent=Msa0477830-mRNA-1 |
| chr3_3 | exon | 82284392 | 82284447 | 82284392 | ID=Msa0477830-mRNA-1:exon:22879;Parent=Msa0477830-mRNA-1 |
| chr3_3 | exon | 82284585 | 82284823 | 82284585 | ID=Msa0477830-mRNA-1:exon:22880;Parent=Msa0477830-mRNA-1 |
| chr3_3 | five_prime_UTR | 82281991 | 82282105 | 82281991 | ID=Msa0477830-mRNA-1:five_prime_utr;Parent=Msa0477830-mRNA-1 |
| chr3_3 | CDS | 82282106 | 82282135 | 82282106 | ID=Msa0477830-mRNA-1:cds;Parent=Msa0477830-mRNA-1 |
| chr3_3 | CDS | 82282290 | 82282502 | 82282290 | ID=Msa0477830-mRNA-1:cds;Parent=Msa0477830-mRNA-1 |
| chr3_3 | CDS | 82283031 | 82283091 | 82283031 | ID=Msa0477830-mRNA-1:cds;Parent=Msa0477830-mRNA-1 |
| chr3_3 | CDS | 82283233 | 82283269 | 82283233 | ID=Msa0477830-mRNA-1:cds;Parent=Msa0477830-mRNA-1 |
| chr3_3 | CDS | 82283703 | 82283780 | 82283703 | ID=Msa0477830-mRNA-1:cds;Parent=Msa0477830-mRNA-1 |
| chr3_3 | CDS | 82283863 | 82283935 | 82283863 | ID=Msa0477830-mRNA-1:cds;Parent=Msa0477830-mRNA-1 |
| chr3_3 | CDS | 82284392 | 82284447 | 82284392 | ID=Msa0477830-mRNA-1:cds;Parent=Msa0477830-mRNA-1 |
| chr3_3 | CDS | 82284585 | 82284666 | 82284585 | ID=Msa0477830-mRNA-1:cds;Parent=Msa0477830-mRNA-1 |
| chr3_3 | three_prime_UTR | 82284667 | 82284823 | 82284667 | ID=Msa0477830-mRNA-1:three_prime_utr;Parent=Msa0477830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
