AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1058010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1058010 MtrunA17_Chr7g0232051 92.381 210 16 0 1 210 1 210 1.31e-144 402
Msa1058010 MtrunA17_Chr4g0018621 31.132 212 115 5 46 229 66 274 1.63e-24 98.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1058010 AT4G25170.1 27.232 224 119 5 47 226 118 341 1.03e-21 92.0
Msa1058010 AT4G25170.2 25.523 239 119 5 47 226 118 356 1.09e-19 86.7
Msa1058010 AT5G61490.1 30.412 194 113 5 47 226 70 255 3.77e-17 78.6

Find 37 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTGGAGTTGCCTGATTC+AGG 0.234726 7_2:+41294181 Msa1058010:CDS
TAATACACATACAAAATAAA+TGG 0.276860 7_2:-41294866 None:intergenic
TAGCCATGATTACAATTAAA+AGG 0.291956 7_2:-41294758 None:intergenic
TGTGTTGCAGCAAAGGCTTC+TGG 0.299635 7_2:+41294165 Msa1058010:CDS
GTAAATTAAAACAGGTCTTT+TGG 0.301302 7_2:+41294898 Msa1058010:three_prime_UTR
TCTCTTTGCTCTGAACTCTT+AGG 0.301873 7_2:-41294552 None:intergenic
TTATCTTCTTGTTGCTGTAA+TGG 0.335551 7_2:+41292792 Msa1058010:CDS
TGCAATCTCAAGGATATAAT+AGG 0.380708 7_2:+41293641 Msa1058010:CDS
TATCATCTGATGAAGCCATT+TGG 0.381555 7_2:+41294125 Msa1058010:CDS
ATCATCTGATGAAGCCATTT+GGG 0.382124 7_2:+41294126 Msa1058010:CDS
GCAAGCTGATCCTGCTGTTA+AGG 0.385703 7_2:+41293687 Msa1058010:CDS
ACTCTTATGATTATGATTCA+AGG 0.400681 7_2:+41293614 Msa1058010:CDS
GTAAAATACAGACCTGAATC+AGG 0.413501 7_2:-41294193 None:intergenic
AACAATCATCATTCATCAAT+GGG 0.416947 7_2:+41292711 Msa1058010:exon
TCAGCATAGAAATCTTAAAC+TGG 0.423620 7_2:+41294577 Msa1058010:CDS
AAACAATCATCATTCATCAA+TGG 0.432468 7_2:+41292710 Msa1058010:exon
AATTAAAAGTAAATTAAAAC+AGG 0.433292 7_2:+41294890 Msa1058010:three_prime_UTR
TGACACTGTTCCATCTCAAA+TGG 0.457616 7_2:+41292872 Msa1058010:CDS
CCTGGTATTGAAAATGCAAC+AGG 0.482841 7_2:+41294678 Msa1058010:CDS
ATTACAGCAACAAGAAGATA+AGG 0.483282 7_2:-41292790 None:intergenic
TATCATGAAAGGAAAAGTCT+TGG 0.499321 7_2:+41294608 Msa1058010:CDS
TAAGAAATGTGTTGCAGCAA+AGG 0.518969 7_2:+41294158 Msa1058010:CDS
TCCTCAACTTCCATTTGAGA+TGG 0.521148 7_2:-41292882 None:intergenic
GATGGAACAGTGTCAAATAC+AGG 0.521605 7_2:-41292864 None:intergenic
TCTTATGACAGCGTCCCAAA+TGG 0.528966 7_2:-41294140 None:intergenic
AGAAAACAAGAGATAACATC+AGG 0.536095 7_2:+41292825 Msa1058010:CDS
TGGATATTTCATATCATGAA+AGG 0.540393 7_2:+41294597 Msa1058010:CDS
AAGAGAGAAACCTTAACAGC+AGG 0.544699 7_2:-41293697 None:intergenic
TCAAGGATTGTGCAATCTCA+AGG 0.559981 7_2:+41293631 Msa1058010:CDS
CATCATTCATCAATGGGAGG+TGG 0.560723 7_2:+41292717 Msa1058010:exon
TACAATTAAAAGGATAACAA+TGG 0.569576 7_2:-41294748 None:intergenic
TCCATCTCAAATGGAAGTTG+AGG 0.577676 7_2:+41292881 Msa1058010:CDS
AATGATTTATTCAAGTACCC+TGG 0.594852 7_2:+41294660 Msa1058010:CDS
GATCTGTTGATCTATGATTG+TGG 0.615202 7_2:-41293587 None:intergenic
TTATTGGCGTTACTCAACTG+AGG 0.661229 7_2:-41292765 None:intergenic
AAACAAGAGATAACATCAGG+TGG 0.661795 7_2:+41292828 Msa1058010:CDS
AATCATCATTCATCAATGGG+AGG 0.669157 7_2:+41292714 Msa1058010:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAAGAAATATAATTAATTT+AGG + chr7_2:41293093-41293112 Msa1058010:intron 10.0%
!! AATTAAAAGTAAATTAAAAC+AGG + chr7_2:41294890-41294909 Msa1058010:three_prime_UTR 10.0%
!! CTAAGAAATATAATTAATTT+AGG + chr7_2:41293093-41293112 Msa1058010:intron 10.0%
!! AATTAAAAGTAAATTAAAAC+AGG + chr7_2:41294890-41294909 Msa1058010:three_prime_UTR 10.0%
!! TTCAAAATACAATCAATAAT+TGG + chr7_2:41293762-41293781 Msa1058010:intron 15.0%
!! TCGTAAAATGAAATATATAA+TGG + chr7_2:41294458-41294477 Msa1058010:intron 15.0%
!! TAATACACATACAAAATAAA+TGG - chr7_2:41294869-41294888 None:intergenic 15.0%
!! TTCAAAATACAATCAATAAT+TGG + chr7_2:41293762-41293781 Msa1058010:intron 15.0%
!! TCGTAAAATGAAATATATAA+TGG + chr7_2:41294458-41294477 Msa1058010:intron 15.0%
!! TAATACACATACAAAATAAA+TGG - chr7_2:41294869-41294888 None:intergenic 15.0%
!!! TTAGATGAAATTGTTTGTTT+TGG + chr7_2:41293022-41293041 Msa1058010:intron 20.0%
!!! GAAAAATAAAAGGAACTTTT+GGG + chr7_2:41293167-41293186 Msa1058010:intron 20.0%
!!! TCAATGTAGTTTTTTTTTTG+AGG + chr7_2:41293317-41293336 Msa1058010:intron 20.0%
!!! CAATGTAGTTTTTTTTTTGA+GGG + chr7_2:41293318-41293337 Msa1058010:intron 20.0%
!!! ACTCAATATAAAAGATTTTG+AGG - chr7_2:41293391-41293410 None:intergenic 20.0%
!!! TTGATTGTATTTTGAAACTA+TGG - chr7_2:41293758-41293777 None:intergenic 20.0%
!!! TTCTTAGTGAATATTTCTTT+TGG - chr7_2:41294272-41294291 None:intergenic 20.0%
!!! TGATTTTCTCAAATTATTAG+CGG - chr7_2:41294353-41294372 None:intergenic 20.0%
!! AATTTAGTGTAATTATGTGT+TGG + chr7_2:41294376-41294395 Msa1058010:intron 20.0%
!! TACAATTAAAAGGATAACAA+TGG - chr7_2:41294751-41294770 None:intergenic 20.0%
!!! TATCCTTTTAATTGTAATCA+TGG + chr7_2:41294755-41294774 Msa1058010:CDS 20.0%
!!! TTAGATGAAATTGTTTGTTT+TGG + chr7_2:41293022-41293041 Msa1058010:intron 20.0%
!!! GAAAAATAAAAGGAACTTTT+GGG + chr7_2:41293167-41293186 Msa1058010:intron 20.0%
!!! TCAATGTAGTTTTTTTTTTG+AGG + chr7_2:41293317-41293336 Msa1058010:intron 20.0%
!!! CAATGTAGTTTTTTTTTTGA+GGG + chr7_2:41293318-41293337 Msa1058010:intron 20.0%
!!! ACTCAATATAAAAGATTTTG+AGG - chr7_2:41293391-41293410 None:intergenic 20.0%
!!! TTGATTGTATTTTGAAACTA+TGG - chr7_2:41293758-41293777 None:intergenic 20.0%
!!! TTCTTAGTGAATATTTCTTT+TGG - chr7_2:41294272-41294291 None:intergenic 20.0%
!!! TGATTTTCTCAAATTATTAG+CGG - chr7_2:41294353-41294372 None:intergenic 20.0%
!! AATTTAGTGTAATTATGTGT+TGG + chr7_2:41294376-41294395 Msa1058010:intron 20.0%
!! TACAATTAAAAGGATAACAA+TGG - chr7_2:41294751-41294770 None:intergenic 20.0%
!!! TATCCTTTTAATTGTAATCA+TGG + chr7_2:41294755-41294774 Msa1058010:CDS 20.0%
! AAACAATCATCATTCATCAA+TGG + chr7_2:41292710-41292729 Msa1058010:exon 25.0%
! AACAATCATCATTCATCAAT+GGG + chr7_2:41292711-41292730 Msa1058010:exon 25.0%
!!! ACAAGAAGATAAGGTTTTAT+TGG - chr7_2:41292784-41292803 None:intergenic 25.0%
! AAGAGTAAGAAGTAACATAA+GGG - chr7_2:41292964-41292983 None:intergenic 25.0%
! AAAGAGTAAGAAGTAACATA+AGG - chr7_2:41292965-41292984 None:intergenic 25.0%
!!! ACTCTTTTGAGATAAATTAG+AGG + chr7_2:41292978-41292997 Msa1058010:intron 25.0%
!! CGAAAAATAAAAGGAACTTT+TGG + chr7_2:41293166-41293185 Msa1058010:intron 25.0%
!!! GTAATTTTTTCGTGACAATA+TGG + chr7_2:41293236-41293255 Msa1058010:intron 25.0%
!! TCTTTTATATTGAGTCCTAA+TGG + chr7_2:41293396-41293415 Msa1058010:intron 25.0%
!! GGAAATAAAGCTGAATATTT+TGG - chr7_2:41293448-41293467 None:intergenic 25.0%
!! ACTTTTTACAAGTTCTACAA+AGG - chr7_2:41293469-41293488 None:intergenic 25.0%
!! GAACTTGTAAAAAGTTTTTC+AGG + chr7_2:41293474-41293493 Msa1058010:intron 25.0%
! ACTCTTATGATTATGATTCA+AGG + chr7_2:41293614-41293633 Msa1058010:CDS 25.0%
!! TTAGTGAATATTTCTTTTGG+TGG - chr7_2:41294269-41294288 None:intergenic 25.0%
! AAATATTCACTAAGAAGAGA+AGG + chr7_2:41294276-41294295 Msa1058010:intron 25.0%
! AGAAGGAATGATATATAACA+CGG + chr7_2:41294293-41294312 Msa1058010:intron 25.0%
!! ATATTTCATTTTACGAAGCA+TGG - chr7_2:41294454-41294473 None:intergenic 25.0%
! TGGATATTTCATATCATGAA+AGG + chr7_2:41294597-41294616 Msa1058010:CDS 25.0%
! TAGCCATGATTACAATTAAA+AGG - chr7_2:41294761-41294780 None:intergenic 25.0%
!! GTAAATTAAAACAGGTCTTT+TGG + chr7_2:41294898-41294917 Msa1058010:three_prime_UTR 25.0%
! AAACAATCATCATTCATCAA+TGG + chr7_2:41292710-41292729 Msa1058010:exon 25.0%
! AACAATCATCATTCATCAAT+GGG + chr7_2:41292711-41292730 Msa1058010:exon 25.0%
!!! ACAAGAAGATAAGGTTTTAT+TGG - chr7_2:41292784-41292803 None:intergenic 25.0%
! AAGAGTAAGAAGTAACATAA+GGG - chr7_2:41292964-41292983 None:intergenic 25.0%
! AAAGAGTAAGAAGTAACATA+AGG - chr7_2:41292965-41292984 None:intergenic 25.0%
!!! ACTCTTTTGAGATAAATTAG+AGG + chr7_2:41292978-41292997 Msa1058010:intron 25.0%
!! CGAAAAATAAAAGGAACTTT+TGG + chr7_2:41293166-41293185 Msa1058010:intron 25.0%
!!! GTAATTTTTTCGTGACAATA+TGG + chr7_2:41293236-41293255 Msa1058010:intron 25.0%
!! TCTTTTATATTGAGTCCTAA+TGG + chr7_2:41293396-41293415 Msa1058010:intron 25.0%
!! GGAAATAAAGCTGAATATTT+TGG - chr7_2:41293448-41293467 None:intergenic 25.0%
!! ACTTTTTACAAGTTCTACAA+AGG - chr7_2:41293469-41293488 None:intergenic 25.0%
!! GAACTTGTAAAAAGTTTTTC+AGG + chr7_2:41293474-41293493 Msa1058010:intron 25.0%
! ACTCTTATGATTATGATTCA+AGG + chr7_2:41293614-41293633 Msa1058010:CDS 25.0%
!! TTAGTGAATATTTCTTTTGG+TGG - chr7_2:41294269-41294288 None:intergenic 25.0%
! AAATATTCACTAAGAAGAGA+AGG + chr7_2:41294276-41294295 Msa1058010:intron 25.0%
! AGAAGGAATGATATATAACA+CGG + chr7_2:41294293-41294312 Msa1058010:intron 25.0%
!! ATATTTCATTTTACGAAGCA+TGG - chr7_2:41294454-41294473 None:intergenic 25.0%
! TGGATATTTCATATCATGAA+AGG + chr7_2:41294597-41294616 Msa1058010:CDS 25.0%
! TAGCCATGATTACAATTAAA+AGG - chr7_2:41294761-41294780 None:intergenic 25.0%
!! GTAAATTAAAACAGGTCTTT+TGG + chr7_2:41294898-41294917 Msa1058010:three_prime_UTR 25.0%
ATTACAGCAACAAGAAGATA+AGG - chr7_2:41292793-41292812 None:intergenic 30.0%
TTATCTTCTTGTTGCTGTAA+TGG + chr7_2:41292792-41292811 Msa1058010:CDS 30.0%
AGAAAACAAGAGATAACATC+AGG + chr7_2:41292825-41292844 Msa1058010:CDS 30.0%
AGATAAATTAGAGGTCTTCT+TGG + chr7_2:41292987-41293006 Msa1058010:intron 30.0%
GATAAATTAGAGGTCTTCTT+GGG + chr7_2:41292988-41293007 Msa1058010:intron 30.0%
! ATTTTTCGCAGCAACAAATA+TGG - chr7_2:41293154-41293173 None:intergenic 30.0%
TTGTTGCTGCGAAAAATAAA+AGG + chr7_2:41293157-41293176 Msa1058010:intron 30.0%
TGTCAATGTAGTTGAAATTG+CGG + chr7_2:41293345-41293364 Msa1058010:intron 30.0%
ATGTTATGAGTACAACCATT+AGG - chr7_2:41293414-41293433 None:intergenic 30.0%
!!! AAAGTTTTTCAGGAATCATG+TGG + chr7_2:41293484-41293503 Msa1058010:intron 30.0%
TCTGACACAACAAATTGAAA+AGG - chr7_2:41293548-41293567 None:intergenic 30.0%
TGCAATCTCAAGGATATAAT+AGG + chr7_2:41293641-41293660 Msa1058010:CDS 30.0%
TTGAGTTATATGTCGTACAT+TGG + chr7_2:41293796-41293815 Msa1058010:intron 30.0%
! TATTTTACCAACTTGTGGAA+TGG + chr7_2:41294208-41294227 Msa1058010:intron 30.0%
TGGAAGAAAACAATGTTAGA+TGG - chr7_2:41294513-41294532 None:intergenic 30.0%
TCAGCATAGAAATCTTAAAC+TGG + chr7_2:41294577-41294596 Msa1058010:CDS 30.0%
TATCATGAAAGGAAAAGTCT+TGG + chr7_2:41294608-41294627 Msa1058010:CDS 30.0%
AATGATTTATTCAAGTACCC+TGG + chr7_2:41294660-41294679 Msa1058010:CDS 30.0%
CACAGTTAGATGAAAAAGTT+AGG + chr7_2:41294709-41294728 Msa1058010:CDS 30.0%
ATTACAGCAACAAGAAGATA+AGG - chr7_2:41292793-41292812 None:intergenic 30.0%
TTATCTTCTTGTTGCTGTAA+TGG + chr7_2:41292792-41292811 Msa1058010:CDS 30.0%
AGAAAACAAGAGATAACATC+AGG + chr7_2:41292825-41292844 Msa1058010:CDS 30.0%
AGATAAATTAGAGGTCTTCT+TGG + chr7_2:41292987-41293006 Msa1058010:intron 30.0%
GATAAATTAGAGGTCTTCTT+GGG + chr7_2:41292988-41293007 Msa1058010:intron 30.0%
! ATTTTTCGCAGCAACAAATA+TGG - chr7_2:41293154-41293173 None:intergenic 30.0%
TTGTTGCTGCGAAAAATAAA+AGG + chr7_2:41293157-41293176 Msa1058010:intron 30.0%
TGTCAATGTAGTTGAAATTG+CGG + chr7_2:41293345-41293364 Msa1058010:intron 30.0%
ATGTTATGAGTACAACCATT+AGG - chr7_2:41293414-41293433 None:intergenic 30.0%
!!! AAAGTTTTTCAGGAATCATG+TGG + chr7_2:41293484-41293503 Msa1058010:intron 30.0%
TCTGACACAACAAATTGAAA+AGG - chr7_2:41293548-41293567 None:intergenic 30.0%
TGCAATCTCAAGGATATAAT+AGG + chr7_2:41293641-41293660 Msa1058010:CDS 30.0%
TTGAGTTATATGTCGTACAT+TGG + chr7_2:41293796-41293815 Msa1058010:intron 30.0%
! TATTTTACCAACTTGTGGAA+TGG + chr7_2:41294208-41294227 Msa1058010:intron 30.0%
TGGAAGAAAACAATGTTAGA+TGG - chr7_2:41294513-41294532 None:intergenic 30.0%
TCAGCATAGAAATCTTAAAC+TGG + chr7_2:41294577-41294596 Msa1058010:CDS 30.0%
TATCATGAAAGGAAAAGTCT+TGG + chr7_2:41294608-41294627 Msa1058010:CDS 30.0%
AATGATTTATTCAAGTACCC+TGG + chr7_2:41294660-41294679 Msa1058010:CDS 30.0%
CACAGTTAGATGAAAAAGTT+AGG + chr7_2:41294709-41294728 Msa1058010:CDS 30.0%
AATCATCATTCATCAATGGG+AGG + chr7_2:41292714-41292733 Msa1058010:exon 35.0%
AAACAAGAGATAACATCAGG+TGG + chr7_2:41292828-41292847 Msa1058010:CDS 35.0%
GCATTTCGCAGCAATATAAA+GGG - chr7_2:41293285-41293304 None:intergenic 35.0%
CTTTATATTGCTGCGAAATG+CGG + chr7_2:41293284-41293303 Msa1058010:intron 35.0%
GATCTGTTGATCTATGATTG+TGG - chr7_2:41293590-41293609 None:intergenic 35.0%
TCGTACATTGGATAAGAAAG+TGG + chr7_2:41293808-41293827 Msa1058010:intron 35.0%
CGTACATTGGATAAGAAAGT+GGG + chr7_2:41293809-41293828 Msa1058010:intron 35.0%
! AACTCATTGCGTTAAGGTTT+TGG + chr7_2:41293864-41293883 Msa1058010:intron 35.0%
TTAATCCTTAAAGCCGTGTT+GGG - chr7_2:41293973-41293992 None:intergenic 35.0%
! TGTGTTGATGAAATGTGTCT+CGG + chr7_2:41294072-41294091 Msa1058010:intron 35.0%
TATCATCTGATGAAGCCATT+TGG + chr7_2:41294125-41294144 Msa1058010:CDS 35.0%
ATCATCTGATGAAGCCATTT+GGG + chr7_2:41294126-41294145 Msa1058010:CDS 35.0%
TAAGAAATGTGTTGCAGCAA+AGG + chr7_2:41294158-41294177 Msa1058010:CDS 35.0%
GTAAAATACAGACCTGAATC+AGG - chr7_2:41294196-41294215 None:intergenic 35.0%
! GTCTGTATTTTACCAACTTG+TGG + chr7_2:41294203-41294222 Msa1058010:intron 35.0%
CATAATTCCATTCCACAAGT+TGG - chr7_2:41294218-41294237 None:intergenic 35.0%
TCTCAAATTATTAGCGGTGT+TGG - chr7_2:41294347-41294366 None:intergenic 35.0%
! GTGTAATTATGTGTTGGTGT+CGG + chr7_2:41294382-41294401 Msa1058010:intron 35.0%
! AATTAAGCGTGTCTTGTTGT+GGG - chr7_2:41294421-41294440 None:intergenic 35.0%
! TTAGGTCTTTTACCTTTAGC+TGG - chr7_2:41294537-41294556 None:intergenic 35.0%
! CTGTTGCATTTTCAATACCA+GGG - chr7_2:41294680-41294699 None:intergenic 35.0%
!! GGTCTTTTGGTTAGTATTTG+CGG + chr7_2:41294911-41294930 Msa1058010:three_prime_UTR 35.0%
AATCATCATTCATCAATGGG+AGG + chr7_2:41292714-41292733 Msa1058010:exon 35.0%
AAACAAGAGATAACATCAGG+TGG + chr7_2:41292828-41292847 Msa1058010:CDS 35.0%
GCATTTCGCAGCAATATAAA+GGG - chr7_2:41293285-41293304 None:intergenic 35.0%
CTTTATATTGCTGCGAAATG+CGG + chr7_2:41293284-41293303 Msa1058010:intron 35.0%
GATCTGTTGATCTATGATTG+TGG - chr7_2:41293590-41293609 None:intergenic 35.0%
TCGTACATTGGATAAGAAAG+TGG + chr7_2:41293808-41293827 Msa1058010:intron 35.0%
CGTACATTGGATAAGAAAGT+GGG + chr7_2:41293809-41293828 Msa1058010:intron 35.0%
! AACTCATTGCGTTAAGGTTT+TGG + chr7_2:41293864-41293883 Msa1058010:intron 35.0%
TTAATCCTTAAAGCCGTGTT+GGG - chr7_2:41293973-41293992 None:intergenic 35.0%
! TGTGTTGATGAAATGTGTCT+CGG + chr7_2:41294072-41294091 Msa1058010:intron 35.0%
TATCATCTGATGAAGCCATT+TGG + chr7_2:41294125-41294144 Msa1058010:CDS 35.0%
ATCATCTGATGAAGCCATTT+GGG + chr7_2:41294126-41294145 Msa1058010:CDS 35.0%
TAAGAAATGTGTTGCAGCAA+AGG + chr7_2:41294158-41294177 Msa1058010:CDS 35.0%
GTAAAATACAGACCTGAATC+AGG - chr7_2:41294196-41294215 None:intergenic 35.0%
! GTCTGTATTTTACCAACTTG+TGG + chr7_2:41294203-41294222 Msa1058010:intron 35.0%
CATAATTCCATTCCACAAGT+TGG - chr7_2:41294218-41294237 None:intergenic 35.0%
TCTCAAATTATTAGCGGTGT+TGG - chr7_2:41294347-41294366 None:intergenic 35.0%
! GTGTAATTATGTGTTGGTGT+CGG + chr7_2:41294382-41294401 Msa1058010:intron 35.0%
! AATTAAGCGTGTCTTGTTGT+GGG - chr7_2:41294421-41294440 None:intergenic 35.0%
! TTAGGTCTTTTACCTTTAGC+TGG - chr7_2:41294537-41294556 None:intergenic 35.0%
! CTGTTGCATTTTCAATACCA+GGG - chr7_2:41294680-41294699 None:intergenic 35.0%
TTATTGGCGTTACTCAACTG+AGG - chr7_2:41292768-41292787 None:intergenic 40.0%
GATGGAACAGTGTCAAATAC+AGG - chr7_2:41292867-41292886 None:intergenic 40.0%
TGACACTGTTCCATCTCAAA+TGG + chr7_2:41292872-41292891 Msa1058010:CDS 40.0%
TCCATCTCAAATGGAAGTTG+AGG + chr7_2:41292881-41292900 Msa1058010:CDS 40.0%
TCCTCAACTTCCATTTGAGA+TGG - chr7_2:41292885-41292904 None:intergenic 40.0%
CGCATTTCGCAGCAATATAA+AGG - chr7_2:41293286-41293305 None:intergenic 40.0%
TTGCGGTTATGTTGTCATTG+CGG + chr7_2:41293362-41293381 Msa1058010:intron 40.0%
TCAAGGATTGTGCAATCTCA+AGG + chr7_2:41293631-41293650 Msa1058010:CDS 40.0%
AAGAGAGAAACCTTAACAGC+AGG - chr7_2:41293700-41293719 None:intergenic 40.0%
CACATGAACTCATTGCGTTA+AGG + chr7_2:41293858-41293877 Msa1058010:intron 40.0%
CTTAATCCTTAAAGCCGTGT+TGG - chr7_2:41293974-41293993 None:intergenic 40.0%
! GAATTAAGCGTGTCTTGTTG+TGG - chr7_2:41294422-41294441 None:intergenic 40.0%
AACAAGACACGCTTAATTCG+AGG + chr7_2:41294423-41294442 Msa1058010:intron 40.0%
! GTTTTCTTCCATCCAGCTAA+AGG + chr7_2:41294522-41294541 Msa1058010:intron 40.0%
! GTCTTTTACCTTTAGCTGGA+TGG - chr7_2:41294533-41294552 None:intergenic 40.0%
! TCTCTTTGCTCTGAACTCTT+AGG - chr7_2:41294555-41294574 None:intergenic 40.0%
! CCTGTTGCATTTTCAATACC+AGG - chr7_2:41294681-41294700 None:intergenic 40.0%
! CCTGGTATTGAAAATGCAAC+AGG + chr7_2:41294678-41294697 Msa1058010:CDS 40.0%
TTATTGGCGTTACTCAACTG+AGG - chr7_2:41292768-41292787 None:intergenic 40.0%
GATGGAACAGTGTCAAATAC+AGG - chr7_2:41292867-41292886 None:intergenic 40.0%
TGACACTGTTCCATCTCAAA+TGG + chr7_2:41292872-41292891 Msa1058010:CDS 40.0%
TCCATCTCAAATGGAAGTTG+AGG + chr7_2:41292881-41292900 Msa1058010:CDS 40.0%
TCCTCAACTTCCATTTGAGA+TGG - chr7_2:41292885-41292904 None:intergenic 40.0%
CGCATTTCGCAGCAATATAA+AGG - chr7_2:41293286-41293305 None:intergenic 40.0%
TTGCGGTTATGTTGTCATTG+CGG + chr7_2:41293362-41293381 Msa1058010:intron 40.0%
TCAAGGATTGTGCAATCTCA+AGG + chr7_2:41293631-41293650 Msa1058010:CDS 40.0%
AAGAGAGAAACCTTAACAGC+AGG - chr7_2:41293700-41293719 None:intergenic 40.0%
CACATGAACTCATTGCGTTA+AGG + chr7_2:41293858-41293877 Msa1058010:intron 40.0%
CTTAATCCTTAAAGCCGTGT+TGG - chr7_2:41293974-41293993 None:intergenic 40.0%
! GAATTAAGCGTGTCTTGTTG+TGG - chr7_2:41294422-41294441 None:intergenic 40.0%
AACAAGACACGCTTAATTCG+AGG + chr7_2:41294423-41294442 Msa1058010:intron 40.0%
! GTTTTCTTCCATCCAGCTAA+AGG + chr7_2:41294522-41294541 Msa1058010:intron 40.0%
! GTCTTTTACCTTTAGCTGGA+TGG - chr7_2:41294533-41294552 None:intergenic 40.0%
! TCTCTTTGCTCTGAACTCTT+AGG - chr7_2:41294555-41294574 None:intergenic 40.0%
! CCTGTTGCATTTTCAATACC+AGG - chr7_2:41294681-41294700 None:intergenic 40.0%
! CCTGGTATTGAAAATGCAAC+AGG + chr7_2:41294678-41294697 Msa1058010:CDS 40.0%
CATCATTCATCAATGGGAGG+TGG + chr7_2:41292717-41292736 Msa1058010:exon 45.0%
TAGTGTCTCTCTCACTTGTG+TGG + chr7_2:41293896-41293915 Msa1058010:intron 45.0%
TCTTATGACAGCGTCCCAAA+TGG - chr7_2:41294143-41294162 None:intergenic 45.0%
!! TTATGTGTTGGTGTCGGACA+CGG + chr7_2:41294388-41294407 Msa1058010:intron 45.0%
CATCATTCATCAATGGGAGG+TGG + chr7_2:41292717-41292736 Msa1058010:exon 45.0%
TAGTGTCTCTCTCACTTGTG+TGG + chr7_2:41293896-41293915 Msa1058010:intron 45.0%
TCTTATGACAGCGTCCCAAA+TGG - chr7_2:41294143-41294162 None:intergenic 45.0%
!! TTATGTGTTGGTGTCGGACA+CGG + chr7_2:41294388-41294407 Msa1058010:intron 45.0%
GCAAGCTGATCCTGCTGTTA+AGG + chr7_2:41293687-41293706 Msa1058010:CDS 50.0%
TCTGCCAGTCTGCTTTGATG+CGG + chr7_2:41293923-41293942 Msa1058010:intron 50.0%
AAAGCCGTGTTGGGTCATGA+GGG - chr7_2:41293964-41293983 None:intergenic 50.0%
TAAAGCCGTGTTGGGTCATG+AGG - chr7_2:41293965-41293984 None:intergenic 50.0%
CATGACCCAACACGGCTTTA+AGG + chr7_2:41293965-41293984 Msa1058010:intron 50.0%
TGTGTTGCAGCAAAGGCTTC+TGG + chr7_2:41294165-41294184 Msa1058010:CDS 50.0%
!! CTTCTGGAGTTGCCTGATTC+AGG + chr7_2:41294181-41294200 Msa1058010:CDS 50.0%
GCAAGCTGATCCTGCTGTTA+AGG + chr7_2:41293687-41293706 Msa1058010:CDS 50.0%
TCTGCCAGTCTGCTTTGATG+CGG + chr7_2:41293923-41293942 Msa1058010:intron 50.0%
AAAGCCGTGTTGGGTCATGA+GGG - chr7_2:41293964-41293983 None:intergenic 50.0%
TAAAGCCGTGTTGGGTCATG+AGG - chr7_2:41293965-41293984 None:intergenic 50.0%
CATGACCCAACACGGCTTTA+AGG + chr7_2:41293965-41293984 Msa1058010:intron 50.0%
TGTGTTGCAGCAAAGGCTTC+TGG + chr7_2:41294165-41294184 Msa1058010:CDS 50.0%
!! CTTCTGGAGTTGCCTGATTC+AGG + chr7_2:41294181-41294200 Msa1058010:CDS 50.0%
CTGCCAGTCTGCTTTGATGC+GGG + chr7_2:41293924-41293943 Msa1058010:intron 55.0%
ACTCCCCTCATGACCCAACA+CGG + chr7_2:41293957-41293976 Msa1058010:intron 55.0%
AAGCCGTGTTGGGTCATGAG+GGG - chr7_2:41293963-41293982 None:intergenic 55.0%
CTGCCAGTCTGCTTTGATGC+GGG + chr7_2:41293924-41293943 Msa1058010:intron 55.0%
ACTCCCCTCATGACCCAACA+CGG + chr7_2:41293957-41293976 Msa1058010:intron 55.0%
AAGCCGTGTTGGGTCATGAG+GGG - chr7_2:41293963-41293982 None:intergenic 55.0%
CCACCCGCATCAAAGCAGAC+TGG - chr7_2:41293930-41293949 None:intergenic 60.0%
CCAGTCTGCTTTGATGCGGG+TGG + chr7_2:41293927-41293946 Msa1058010:intron 60.0%
TGGGTCATGAGGGGAGTCCA+GGG - chr7_2:41293954-41293973 None:intergenic 60.0%
TTGGGTCATGAGGGGAGTCC+AGG - chr7_2:41293955-41293974 None:intergenic 60.0%
CCACCCGCATCAAAGCAGAC+TGG - chr7_2:41293930-41293949 None:intergenic 60.0%
CCAGTCTGCTTTGATGCGGG+TGG + chr7_2:41293927-41293946 Msa1058010:intron 60.0%
TGGGTCATGAGGGGAGTCCA+GGG - chr7_2:41293954-41293973 None:intergenic 60.0%
TTGGGTCATGAGGGGAGTCC+AGG - chr7_2:41293955-41293974 None:intergenic 60.0%
GCTTTGATGCGGGTGGTCCC+TGG + chr7_2:41293934-41293953 Msa1058010:intron 65.0%
GCTTTGATGCGGGTGGTCCC+TGG + chr7_2:41293934-41293953 Msa1058010:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 41292703 41294931 41292703 ID=Msa1058010;Name=Msa1058010
chr7_2 mRNA 41292703 41294931 41292703 ID=Msa1058010-mRNA-1;Parent=Msa1058010;Name=Msa1058010-mRNA-1;_AED=0.23;_eAED=0.23;_QI=26|1|1|1|1|1|4|128|232
chr7_2 exon 41292703 41292925 41292703 ID=Msa1058010-mRNA-1:exon:7568;Parent=Msa1058010-mRNA-1
chr7_2 exon 41293567 41293708 41293567 ID=Msa1058010-mRNA-1:exon:7569;Parent=Msa1058010-mRNA-1
chr7_2 exon 41294109 41294202 41294109 ID=Msa1058010-mRNA-1:exon:7570;Parent=Msa1058010-mRNA-1
chr7_2 exon 41294538 41294931 41294538 ID=Msa1058010-mRNA-1:exon:7571;Parent=Msa1058010-mRNA-1
chr7_2 five_prime_UTR 41292703 41292728 41292703 ID=Msa1058010-mRNA-1:five_prime_utr;Parent=Msa1058010-mRNA-1
chr7_2 CDS 41292729 41292925 41292729 ID=Msa1058010-mRNA-1:cds;Parent=Msa1058010-mRNA-1
chr7_2 CDS 41293567 41293708 41293567 ID=Msa1058010-mRNA-1:cds;Parent=Msa1058010-mRNA-1
chr7_2 CDS 41294109 41294202 41294109 ID=Msa1058010-mRNA-1:cds;Parent=Msa1058010-mRNA-1
chr7_2 CDS 41294538 41294803 41294538 ID=Msa1058010-mRNA-1:cds;Parent=Msa1058010-mRNA-1
chr7_2 three_prime_UTR 41294804 41294931 41294804 ID=Msa1058010-mRNA-1:three_prime_utr;Parent=Msa1058010-mRNA-1
Gene Sequence

>Msa1058010

ATGGGAGGTGGAACTATGCATATTGATCATCTTGTACCTCAGTTGAGTAACGCCAATAAAACCTTATCTTCTTGTTGCTGTAATGGTCAGTTCTGCAGAAAACAAGAGATAACATCAGGTGGTAATCTCTATACTCCTGTATTTGACACTGTTCCATCTCAAATGGAAGTTGAGGATGCAATTTCAGCTCTTCAAGAATTTATGAAAGCAGTATCAACCACAATCATAGATCAACAGATCGCAGACTCTTATGATTATGATTCAAGGATTGTGCAATCTCAAGGATATAATAGGCTTTACAATGCTCTTCAGTTGCTGCAAGCTGATCCTGCTGTTAAGAGTTTAGTGATTTCACTATCATCTGATGAAGCCATTTGGGACGCTGTCATAAGAAATGTGTTGCAGCAAAGGCTTCTGGAGTTGCCTGATTCAGCTAAAGGTAAAAGACCTAAGAGTTCAGAGCAAAGAGAGATCAGCATAGAAATCTTAAACTGGATATTTCATATCATGAAAGGAAAAGTCTTGGAACTGATACAAAGTTTTCAGTCACTTATGAATGATTTATTCAAGTACCCTGGTATTGAAAATGCAACAGGAGATACATCACAGTTAGATGAAAAAGTTAGGTCATCTACGCTTCTTTCCATTGTTATCCTTTTAATTGTAATCATGGCTAGATATCAAAGTCGTCAAGTCTAA

Protein sequence

>Msa1058010

MGGGTMHIDHLVPQLSNANKTLSSCCCNGQFCRKQEITSGGNLYTPVFDTVPSQMEVEDAISALQEFMKAVSTTIIDQQIADSYDYDSRIVQSQGYNRLYNALQLLQADPAVKSLVISLSSDEAIWDAVIRNVLQQRLLELPDSAKGKRPKSSEQREISIEILNWIFHIMKGKVLELIQSFQSLMNDLFKYPGIENATGDTSQLDEKVRSSTLLSIVILLIVIMARYQSRQV*