Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383680 | XP_024633777.1 | 94.819 | 193 | 8 | 1 | 1 | 193 | 1 | 191 | 9.20e-130 | 372 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383680 | sp|Q9Y3E5|PTH2_HUMAN | 42.236 | 161 | 92 | 1 | 33 | 192 | 18 | 178 | 1.46e-39 | 136 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383680 | G7J3G3 | 95.855 | 193 | 8 | 0 | 1 | 193 | 1 | 193 | 5.00e-127 | 365 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027540 | Msa0383680 | 0.811293 | 7.527923e-51 | -8.615850e-47 |
| Msa0030730 | Msa0383680 | 0.818775 | 1.644081e-52 | -8.615850e-47 |
| Msa0073820 | Msa0383680 | 0.817329 | 3.488573e-52 | -8.615850e-47 |
| Msa0075310 | Msa0383680 | 0.802546 | 5.330111e-49 | -8.615850e-47 |
| Msa0091770 | Msa0383680 | 0.817482 | 3.223829e-52 | -8.615850e-47 |
| Msa0149500 | Msa0383680 | 0.814200 | 1.738799e-51 | -8.615850e-47 |
| Msa0194570 | Msa0383680 | 0.805648 | 1.206163e-49 | -8.615850e-47 |
| Msa0374070 | Msa0383680 | 0.805955 | 1.039543e-49 | -8.615850e-47 |
| Msa0376510 | Msa0383680 | 0.823496 | 1.342246e-53 | -8.615850e-47 |
| Msa0383680 | Msa0423250 | 0.808303 | 3.309592e-50 | -8.615850e-47 |
| Msa0383680 | Msa0425050 | 0.828055 | 1.112133e-54 | -8.615850e-47 |
| Msa0383680 | Msa0434050 | 0.890438 | 9.851332e-74 | -8.615850e-47 |
| Msa0383680 | Msa0477830 | 0.881473 | 2.331431e-70 | -8.615850e-47 |
| Msa0383680 | Msa0524090 | 0.801483 | 8.815272e-49 | -8.615850e-47 |
| Msa0383680 | Msa0524120 | 0.825356 | 4.901938e-54 | -8.615850e-47 |
| Msa0383680 | Msa0546380 | 0.811886 | 5.594177e-51 | -8.615850e-47 |
| Msa0383680 | Msa0550110 | 0.826206 | 3.080641e-54 | -8.615850e-47 |
| Msa0383680 | Msa0577940 | -0.816268 | 6.037142e-52 | -8.615850e-47 |
| Msa0383680 | Msa0605620 | 0.829764 | 4.287927e-55 | -8.615850e-47 |
| Msa0383680 | Msa0625530 | -0.815981 | 6.998198e-52 | -8.615850e-47 |
| Msa0383680 | Msa0657670 | 0.804261 | 2.351304e-49 | -8.615850e-47 |
| Msa0383680 | Msa0725480 | -0.818799 | 1.623116e-52 | -8.615850e-47 |
| Msa0383680 | Msa0766100 | -0.807059 | 6.082641e-50 | -8.615850e-47 |
| Msa0383680 | Msa0770430 | 0.800031 | 1.743685e-48 | -8.615850e-47 |
| Msa0383680 | Msa0792510 | 0.819262 | 1.273540e-52 | -8.615850e-47 |
| Msa0383680 | Msa0907700 | 0.802284 | 6.035355e-49 | -8.615850e-47 |
| Msa0383680 | Msa1036390 | 0.811943 | 5.436990e-51 | -8.615850e-47 |
| Msa0383680 | Msa1038050 | 0.807052 | 6.103142e-50 | -8.615850e-47 |
| Msa0383680 | Msa1058010 | 0.817514 | 3.169616e-52 | -8.615850e-47 |
| Msa0383680 | Msa1073840 | 0.816326 | 5.858311e-52 | -8.615850e-47 |
| Msa0383680 | Msa1076680 | 0.804500 | 2.096650e-49 | -8.615850e-47 |
| Msa0383680 | Msa1102540 | 0.809501 | 1.834127e-50 | -8.615850e-47 |
| Msa0383680 | Msa1125780 | 0.805705 | 1.173566e-49 | -8.615850e-47 |
| Msa0383680 | Msa1125950 | 0.806109 | 9.649771e-50 | -8.615850e-47 |
| Msa0383680 | Msa1159990 | 0.806428 | 8.264534e-50 | -8.615850e-47 |
| Msa0383680 | Msa1171340 | 0.805974 | 1.030076e-49 | -8.615850e-47 |
| Msa0383680 | Msa1171690 | 0.815990 | 6.964645e-52 | -8.615850e-47 |
| Msa0383680 | Msa1221200 | -0.805299 | 1.427454e-49 | -8.615850e-47 |
| Msa0383680 | Msa1326000 | 0.804848 | 1.773458e-49 | -8.615850e-47 |
| Msa0383680 | Msa1358870 | -0.809082 | 2.255209e-50 | -8.615850e-47 |
| Msa0383680 | Msa1373950 | 0.805925 | 1.054801e-49 | -8.615850e-47 |
| Msa0383680 | Msa1385900 | 0.815417 | 9.346120e-52 | -8.615850e-47 |
| Msa0383680 | Msa1418200 | 0.811676 | 6.215784e-51 | -8.615850e-47 |
| Msa0383680 | Msa1464560 | 0.819357 | 1.211617e-52 | -8.615850e-47 |
| Msa0298940 | Msa0383680 | 0.818545 | 1.853639e-52 | -8.615850e-47 |
| Msa0298970 | Msa0383680 | 0.834490 | 2.909255e-56 | -8.615850e-47 |
| Msa0301180 | Msa0383680 | 0.817109 | 3.910648e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383680 | MtrunA17_Chr3g0140251 | 94.611 | 167 | 9 | 0 | 1 | 167 | 1 | 167 | 6.77e-110 | 311 |
| Msa0383680 | MtrunA17_Chr4g0038421 | 46.154 | 117 | 62 | 1 | 77 | 193 | 75 | 190 | 6.43e-32 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383680 | AT4G32900.2 | 65.285 | 193 | 67 | 0 | 1 | 193 | 1 | 193 | 3.39e-91 | 265 |
| Msa0383680 | AT4G32900.3 | 63.030 | 165 | 61 | 0 | 1 | 165 | 1 | 165 | 6.76e-73 | 218 |
| Msa0383680 | AT4G32900.4 | 63.030 | 165 | 61 | 0 | 1 | 165 | 1 | 165 | 6.76e-73 | 218 |
| Msa0383680 | AT4G32900.1 | 60.714 | 140 | 55 | 0 | 1 | 140 | 1 | 140 | 1.06e-56 | 176 |
| Msa0383680 | AT5G16870.1 | 41.714 | 175 | 91 | 5 | 20 | 193 | 5 | 169 | 1.28e-35 | 123 |
| Msa0383680 | AT3G03010.3 | 47.863 | 117 | 60 | 1 | 77 | 193 | 64 | 179 | 1.15e-31 | 113 |
| Msa0383680 | AT3G03010.2 | 47.863 | 117 | 60 | 1 | 77 | 193 | 64 | 179 | 1.15e-31 | 113 |
| Msa0383680 | AT3G03010.1 | 47.863 | 117 | 60 | 1 | 77 | 193 | 64 | 179 | 1.15e-31 | 113 |
| Msa0383680 | AT3G03010.5 | 51.562 | 64 | 31 | 0 | 77 | 140 | 64 | 127 | 3.25e-17 | 75.1 |
| Msa0383680 | AT3G03010.4 | 51.562 | 64 | 31 | 0 | 77 | 140 | 64 | 127 | 3.25e-17 | 75.1 |
Find 59 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCAAGTCACAACAATTT+TGG | 0.072538 | 3_1:-86678238 | None:intergenic |
| TTCAGGGCCAAAAGCAATTC+TGG | 0.238209 | 3_1:+86679074 | Msa0383680:intron |
| TGCTGATCAAGAACTTAAAA+TGG | 0.256898 | 3_1:+86676947 | Msa0383680:CDS |
| TCTTTCCAGATTTCATCTTT+AGG | 0.306077 | 3_1:-86677545 | None:intergenic |
| TGTATCAGGTTCTGGTTGTT+AGG | 0.313277 | 3_1:+86677517 | Msa0383680:intron |
| GTTAACCTATGGTCTGTCTT+CGG | 0.322394 | 3_1:+86679178 | Msa0383680:three_prime_UTR |
| TTAACCTATGGTCTGTCTTC+GGG | 0.327219 | 3_1:+86679179 | Msa0383680:three_prime_UTR |
| ACCGAATCCAGAATTGCTTT+TGG | 0.356047 | 3_1:-86679081 | None:intergenic |
| AGGAAGCAGCTGAGGGTATT+GGG | 0.357565 | 3_1:+86678368 | Msa0383680:CDS |
| CTTGTCATTGGTTTCATTTG+TGG | 0.367500 | 3_1:+86676825 | Msa0383680:CDS |
| CAAAAGGGAGAATGGTTATC+AGG | 0.368060 | 3_1:+86676771 | Msa0383680:CDS |
| TTCATTCCAGGTCTTGTCAT+TGG | 0.373028 | 3_1:+86676813 | Msa0383680:CDS |
| AAGGAAGCAGCTGAGGGTAT+TGG | 0.388038 | 3_1:+86678367 | Msa0383680:CDS |
| CAAGACCTAAAGATGAAATC+TGG | 0.399487 | 3_1:+86677540 | Msa0383680:CDS |
| GCAATTCTGGATTCGGTGAC+TGG | 0.400755 | 3_1:+86679087 | Msa0383680:CDS |
| AAGCCAGAGAATTTCATTCC+AGG | 0.410494 | 3_1:+86676801 | Msa0383680:CDS |
| CAACTCTCTGTCTCAACTAA+TGG | 0.417851 | 3_1:+86676924 | Msa0383680:CDS |
| TGCTATGTTCTTATCCGGTC+TGG | 0.424708 | 3_1:-86676507 | None:intergenic |
| TCAAAGACTGTTCTTGCTGT+TGG | 0.433145 | 3_1:+86678914 | Msa0383680:CDS |
| GAAACAACAAGAAAAGCAAA+AGG | 0.436943 | 3_1:+86676755 | Msa0383680:intron |
| GCCAAAAGCAATTCTGGATT+CGG | 0.450419 | 3_1:+86679080 | Msa0383680:CDS |
| TTGGATAAGTGATTTCTAGT+TGG | 0.453255 | 3_1:-86676870 | None:intergenic |
| TCAACTGCTATGTTCTTATC+CGG | 0.465872 | 3_1:-86676512 | None:intergenic |
| AGCCAGGCTTTGTTAACCTA+TGG | 0.473264 | 3_1:+86679167 | Msa0383680:three_prime_UTR |
| CCCAATGTCTTAAAAGAGAC+CGG | 0.478499 | 3_1:-86678200 | None:intergenic |
| AGACCTGGAATGAAATTCTC+TGG | 0.481100 | 3_1:-86676804 | None:intergenic |
| CAACCTAAAATCCACCGAAC+AGG | 0.481970 | 3_1:+86676576 | Msa0383680:CDS |
| GTTATTGAAGAATACCTGTT+CGG | 0.492171 | 3_1:-86676590 | None:intergenic |
| TGTCATCTTCAGGTTTCAGC+AGG | 0.498407 | 3_1:+86678890 | Msa0383680:intron |
| CATCTGCTTACATTTCCTGT+TGG | 0.505133 | 3_1:-86678263 | None:intergenic |
| GGATTCGGTGACTGGAAGGT+TGG | 0.507459 | 3_1:+86679095 | Msa0383680:CDS |
| TGTGACTTGCAAGAACCAAC+AGG | 0.509191 | 3_1:+86678248 | Msa0383680:CDS |
| AAGAAAAGCAAAAGGGAGAA+TGG | 0.509470 | 3_1:+86676763 | Msa0383680:CDS |
| GACCATAGGTTAACAAAGCC+TGG | 0.510702 | 3_1:-86679169 | None:intergenic |
| CTGGCTGATTTATCACGCTA+TGG | 0.514136 | 3_1:-86679150 | None:intergenic |
| ACTGTTCTTGCTGTTGGACC+TGG | 0.520353 | 3_1:+86678920 | Msa0383680:CDS |
| GCATCGGAGACAACAAAAGT+AGG | 0.520501 | 3_1:-86678394 | None:intergenic |
| AAACAACAAGAAAAGCAAAA+GGG | 0.522970 | 3_1:+86676756 | Msa0383680:CDS |
| CCCGCAAAACAAACAAATTG+AGG | 0.525883 | 3_1:-86676471 | None:intergenic |
| TACCTGTGTTCGTCCTGCAT+CGG | 0.526970 | 3_1:-86678410 | None:intergenic |
| TTCTGGATTCGGTGACTGGA+AGG | 0.541644 | 3_1:+86679091 | Msa0383680:CDS |
| TCAAAATTAATTTCAACGCA+AGG | 0.544145 | 3_1:+86676543 | Msa0383680:five_prime_UTR |
| TGTATGGCAGATGCTGCCAC+CGG | 0.557778 | 3_1:+86677717 | Msa0383680:intron |
| GACATGTTGTTACTTATACA+AGG | 0.564493 | 3_1:+86679283 | Msa0383680:three_prime_UTR |
| ATGAAACCAATGACAAGACC+TGG | 0.577308 | 3_1:-86676819 | None:intergenic |
| TAAGCTCAAGGAAGCAGCTG+AGG | 0.585263 | 3_1:+86678360 | Msa0383680:CDS |
| ATTGAAGAATACCTGTTCGG+TGG | 0.590827 | 3_1:-86676587 | None:intergenic |
| TTTGATCAGGAATAAGCTCA+AGG | 0.591705 | 3_1:+86678348 | Msa0383680:intron |
| CATCGGAGACAACAAAAGTA+GGG | 0.602209 | 3_1:-86678393 | None:intergenic |
| CTCCGATGCAGGACGAACAC+AGG | 0.606811 | 3_1:+86678408 | Msa0383680:CDS |
| CGTTAATTCAGCATACATGC+CGG | 0.627029 | 3_1:-86677736 | None:intergenic |
| CATAGCGTGATAAATCAGCC+AGG | 0.628311 | 3_1:+86679151 | Msa0383680:three_prime_UTR |
| CATTAGTTGAGACAGAGAGT+TGG | 0.635902 | 3_1:-86676923 | None:intergenic |
| AAGCTCAAGGAAGCAGCTGA+GGG | 0.642971 | 3_1:+86678361 | Msa0383680:CDS |
| GCATACTTCAGTGACCAGAC+CGG | 0.649637 | 3_1:+86676493 | Msa0383680:five_prime_UTR |
| CGTGCCCGAAGACAGACCAT+AGG | 0.671292 | 3_1:-86679183 | None:intergenic |
| TAATTCAGCATACATGCCGG+TGG | 0.683317 | 3_1:-86677733 | None:intergenic |
| TGTATGCTGAATTAACGCGA+AGG | 0.695292 | 3_1:+86677742 | Msa0383680:CDS |
| TTAAGACATTGGGAACAGTG+CGG | 0.729788 | 3_1:+86678210 | Msa0383680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTATTCATTAAAATAATT+GGG | - | chr3_1:86676716-86676735 | None:intergenic | 10.0% |
| !! | ATACTATTCATTAAAATAAT+TGG | - | chr3_1:86676717-86676736 | None:intergenic | 10.0% |
| !! | TTCAACTTATTTAAAAAAAA+TGG | - | chr3_1:86677328-86677347 | None:intergenic | 10.0% |
| !!! | GTATTTTATAAAATTGTTAC+CGG | - | chr3_1:86677094-86677113 | None:intergenic | 15.0% |
| !! | TTCAATTCAATTCAATGTTT+AGG | + | chr3_1:86676682-86676701 | Msa0383680:intron | 20.0% |
| !! | TCAATTCAATTCAATGTTTA+GGG | + | chr3_1:86676683-86676702 | Msa0383680:intron | 20.0% |
| !! | ATTCATTAAAATAATTGGGT+TGG | - | chr3_1:86676712-86676731 | None:intergenic | 20.0% |
| !!! | TTTTATGTATTGAGTTCATA+TGG | + | chr3_1:86677180-86677199 | Msa0383680:intron | 20.0% |
| !! | AACAACAAATGTTTATTCAA+AGG | - | chr3_1:86677226-86677245 | None:intergenic | 20.0% |
| !!! | TCTATTTTACAAATGTTATG+AGG | + | chr3_1:86677406-86677425 | Msa0383680:intron | 20.0% |
| !! | AAATGTAAAATGTTTGTATC+AGG | + | chr3_1:86677503-86677522 | Msa0383680:intron | 20.0% |
| !! | AAAAACATATATCCATGTAA+AGG | - | chr3_1:86677697-86677716 | None:intergenic | 20.0% |
| !!! | ATGGATATATGTTTTTTGTA+TGG | + | chr3_1:86677701-86677720 | Msa0383680:intron | 20.0% |
| !!! | CTATAACACAATCTTTTTAA+CGG | - | chr3_1:86677832-86677851 | None:intergenic | 20.0% |
| !!! | CAAATTTTGTACAGAAAAAA+GGG | - | chr3_1:86677930-86677949 | None:intergenic | 20.0% |
| !! | AATAATATCGAATTTCATTC+AGG | + | chr3_1:86678109-86678128 | Msa0383680:intron | 20.0% |
| !!! | CAGTATTGTAAATATACTTT+TGG | + | chr3_1:86678298-86678317 | Msa0383680:intron | 20.0% |
| ! | TCAAAATTAATTTCAACGCA+AGG | + | chr3_1:86676543-86676562 | Msa0383680:five_prime_UTR | 25.0% |
| ! | TAATAATACCCATTTGGATT+TGG | - | chr3_1:86676625-86676644 | None:intergenic | 25.0% |
| !! | ATTTTCAGAATTAAGCAGAA+AGG | - | chr3_1:86676652-86676671 | None:intergenic | 25.0% |
| ! | AAACAACAAGAAAAGCAAAA+GGG | + | chr3_1:86676756-86676775 | Msa0383680:CDS | 25.0% |
| ! | TCTTTGCATTTAATTAAAGC+CGG | - | chr3_1:86677005-86677024 | None:intergenic | 25.0% |
| ! | ATAGTTTACAACAGAATAAC+AGG | - | chr3_1:86677042-86677061 | None:intergenic | 25.0% |
| !! | ATTTTACAAATGTTATGAGG+AGG | + | chr3_1:86677409-86677428 | Msa0383680:intron | 25.0% |
| !! | TTTTACAAATGTTATGAGGA+GGG | + | chr3_1:86677410-86677429 | Msa0383680:intron | 25.0% |
| ! | TGTCTATTACAAACTCTATT+AGG | + | chr3_1:86677640-86677659 | Msa0383680:intron | 25.0% |
| ! | GAAAAAAGGGATTATATGAA+TGG | - | chr3_1:86677917-86677936 | None:intergenic | 25.0% |
| !! | GCAAATTTTGTACAGAAAAA+AGG | - | chr3_1:86677931-86677950 | None:intergenic | 25.0% |
| !!! | TACAAAATTTGCTATAGTGA+AGG | + | chr3_1:86677939-86677958 | Msa0383680:intron | 25.0% |
| !!! | TTTTTGGTTGTTATCCTTAT+TGG | + | chr3_1:86678140-86678159 | Msa0383680:intron | 25.0% |
| ! | GGTAATAATGCTTTGATATA+TGG | + | chr3_1:86678429-86678448 | Msa0383680:intron | 25.0% |
| !! | CTATGTGATAAGAGTTTTTA+AGG | - | chr3_1:86678477-86678496 | None:intergenic | 25.0% |
| !!! | GAAATTAGTTGGTTAGTTTT+GGG | + | chr3_1:86678736-86678755 | Msa0383680:intron | 25.0% |
| ! | TGAATATCCTGTTAAAAATC+TGG | - | chr3_1:86678816-86678835 | None:intergenic | 25.0% |
| ! | TCAAAATACTTATGTATGAC+AGG | + | chr3_1:86679024-86679043 | Msa0383680:intron | 25.0% |
| !!! | AATTTTAGTATCTGCTAACT+AGG | + | chr3_1:86679222-86679241 | Msa0383680:three_prime_UTR | 25.0% |
| !!! | ATTTTAGTATCTGCTAACTA+GGG | + | chr3_1:86679223-86679242 | Msa0383680:three_prime_UTR | 25.0% |
| !!! | TCCTCAATTTGTTTGTTTTG+CGG | + | chr3_1:86676470-86676489 | Msa0383680:five_prime_UTR | 30.0% |
| GTTATTGAAGAATACCTGTT+CGG | - | chr3_1:86676593-86676612 | None:intergenic | 30.0% | |
| AAACATGTTCCAAATCCAAA+TGG | + | chr3_1:86676613-86676632 | Msa0383680:intron | 30.0% | |
| AACATGTTCCAAATCCAAAT+GGG | + | chr3_1:86676614-86676633 | Msa0383680:intron | 30.0% | |
| GGCTAATAATAATACCCATT+TGG | - | chr3_1:86676631-86676650 | None:intergenic | 30.0% | |
| GAAACAACAAGAAAAGCAAA+AGG | + | chr3_1:86676755-86676774 | Msa0383680:intron | 30.0% | |
| !! | TTGGATAAGTGATTTCTAGT+TGG | - | chr3_1:86676873-86676892 | None:intergenic | 30.0% |
| TGCTGATCAAGAACTTAAAA+TGG | + | chr3_1:86676947-86676966 | Msa0383680:CDS | 30.0% | |
| TTCATCACTTTCTCATACTA+TGG | + | chr3_1:86676979-86676998 | Msa0383680:intron | 30.0% | |
| TAAATGAGCCAATAACAGAT+TGG | - | chr3_1:86677135-86677154 | None:intergenic | 30.0% | |
| !!! | TCAGTAGTTTTAGCTCTAAT+AGG | - | chr3_1:86677252-86677271 | None:intergenic | 30.0% |
| TTTACAAATGTTATGAGGAG+GGG | + | chr3_1:86677411-86677430 | Msa0383680:intron | 30.0% | |
| AAAATGTTTGTATCAGGTTC+TGG | + | chr3_1:86677509-86677528 | Msa0383680:intron | 30.0% | |
| TCTTTCCAGATTTCATCTTT+AGG | - | chr3_1:86677548-86677567 | None:intergenic | 30.0% | |
| AGGCTAGTATACTAAAAAGA+TGG | - | chr3_1:86677671-86677690 | None:intergenic | 30.0% | |
| ! | TTTTATCATGAAACCGATGT+TGG | - | chr3_1:86677786-86677805 | None:intergenic | 30.0% |
| ! | TTCCTTTACATCTAAAGCAA+AGG | + | chr3_1:86677969-86677988 | Msa0383680:intron | 30.0% |
| !!! | CATTCAGGCAACATATTTTT+TGG | + | chr3_1:86678124-86678143 | Msa0383680:intron | 30.0% |
| ! | TTGCAAGTCACAACAATTTT+GGG | - | chr3_1:86678240-86678259 | None:intergenic | 30.0% |
| TAATGCTTTGATATATGGCT+AGG | + | chr3_1:86678434-86678453 | Msa0383680:intron | 30.0% | |
| !!! | GACTATTTTTGTCTTCTGTT+AGG | + | chr3_1:86678590-86678609 | Msa0383680:intron | 30.0% |
| TAGGAAAGCTTACATCAAAT+AGG | + | chr3_1:86678626-86678645 | Msa0383680:intron | 30.0% | |
| ATTTGCAGCAAATTAACCAA+CGG | - | chr3_1:86678695-86678714 | None:intergenic | 30.0% | |
| !! | GTTAATTTGCTGCAAATAGA+GGG | + | chr3_1:86678698-86678717 | Msa0383680:intron | 30.0% |
| !! | TTAATTTGCTGCAAATAGAG+GGG | + | chr3_1:86678699-86678718 | Msa0383680:intron | 30.0% |
| !!! | GGAAATTAGTTGGTTAGTTT+TGG | + | chr3_1:86678735-86678754 | Msa0383680:intron | 30.0% |
| CTGTTAAAAATCTGGATCAA+TGG | - | chr3_1:86678808-86678827 | None:intergenic | 30.0% | |
| ! | CATTGATCCAGATTTTTAAC+AGG | + | chr3_1:86678806-86678825 | Msa0383680:intron | 30.0% |
| ! | TTTTAGTATCTGCTAACTAG+GGG | + | chr3_1:86679224-86679243 | Msa0383680:three_prime_UTR | 30.0% |
| !! | TCAATAGAGCACTCTATTTT+TGG | + | chr3_1:86679247-86679266 | Msa0383680:three_prime_UTR | 30.0% |
| ! | GACATGTTGTTACTTATACA+AGG | + | chr3_1:86679283-86679302 | Msa0383680:three_prime_UTR | 30.0% |
| !!! | CCTCAATTTGTTTGTTTTGC+GGG | + | chr3_1:86676471-86676490 | Msa0383680:five_prime_UTR | 35.0% |
| TCAACTGCTATGTTCTTATC+CGG | - | chr3_1:86676515-86676534 | None:intergenic | 35.0% | |
| AAGAAAAGCAAAAGGGAGAA+TGG | + | chr3_1:86676763-86676782 | Msa0383680:CDS | 35.0% | |
| !! | CTTGTCATTGGTTTCATTTG+TGG | + | chr3_1:86676825-86676844 | Msa0383680:CDS | 35.0% |
| ! | GGTGGATGAGAATATTTTGT+TGG | - | chr3_1:86676892-86676911 | None:intergenic | 35.0% |
| AGTTTCTGCCAATCTGTTAT+TGG | + | chr3_1:86677124-86677143 | Msa0383680:intron | 35.0% | |
| !! | CTGTTATTGGCTCATTTAGA+AGG | + | chr3_1:86677137-86677156 | Msa0383680:intron | 35.0% |
| TCCAGTAAAAGAAGTTCGTA+GGG | - | chr3_1:86677462-86677481 | None:intergenic | 35.0% | |
| ATCCAGTAAAAGAAGTTCGT+AGG | - | chr3_1:86677463-86677482 | None:intergenic | 35.0% | |
| CAAGACCTAAAGATGAAATC+TGG | + | chr3_1:86677540-86677559 | Msa0383680:CDS | 35.0% | |
| ! | ATATATCCATGTAAAGGCAC+AGG | - | chr3_1:86677691-86677710 | None:intergenic | 35.0% |
| ! | TTGTAAGCACTGTGTGATAA+CGG | + | chr3_1:86677872-86677891 | Msa0383680:intron | 35.0% |
| ! | TGCCTTTGCTTTAGATGTAA+AGG | - | chr3_1:86677974-86677993 | None:intergenic | 35.0% |
| GGAGCTTATTATAGCCAATA+AGG | - | chr3_1:86678157-86678176 | None:intergenic | 35.0% | |
| !! | ACTGCAAAAGTATTCAGCAA+TGG | - | chr3_1:86678178-86678197 | None:intergenic | 35.0% |
| ! | CTGAATACTTTTGCAGTAAC+CGG | + | chr3_1:86678181-86678200 | Msa0383680:intron | 35.0% |
| ! | CTTGCAAGTCACAACAATTT+TGG | - | chr3_1:86678241-86678260 | None:intergenic | 35.0% |
| CTTATTCCTGATCAAAATCC+AGG | - | chr3_1:86678344-86678363 | None:intergenic | 35.0% | |
| TTTGATCAGGAATAAGCTCA+AGG | + | chr3_1:86678348-86678367 | Msa0383680:intron | 35.0% | |
| TTCTTAGGAATGCATGTTGA+AGG | + | chr3_1:86678537-86678556 | Msa0383680:intron | 35.0% | |
| TCTTAGGAATGCATGTTGAA+GGG | + | chr3_1:86678538-86678557 | Msa0383680:intron | 35.0% | |
| ! | AATAGTCTCTAAAGAGTGTG+AGG | - | chr3_1:86678577-86678596 | None:intergenic | 35.0% |
| GATGTAAGCTTTCCTAGTTA+AGG | - | chr3_1:86678622-86678641 | None:intergenic | 35.0% | |
| !! | GGTTAATTTGCTGCAAATAG+AGG | + | chr3_1:86678697-86678716 | Msa0383680:intron | 35.0% |
| CGAAAGAAAGGGAAATTAGT+TGG | + | chr3_1:86678725-86678744 | Msa0383680:intron | 35.0% | |
| !!! | ATTAGTTGGTTAGTTTTGGG+TGG | + | chr3_1:86678739-86678758 | Msa0383680:intron | 35.0% |
| !!! | TTAGTTGGTTAGTTTTGGGT+GGG | + | chr3_1:86678740-86678759 | Msa0383680:intron | 35.0% |
| AATCTGGATCAATGGAACAT+TGG | - | chr3_1:86678800-86678819 | None:intergenic | 35.0% | |
| !! | GTTCTTGACTTGCTTTATGT+TGG | + | chr3_1:86678961-86678980 | Msa0383680:intron | 35.0% |
| CCCGCAAAACAAACAAATTG+AGG | - | chr3_1:86676474-86676493 | None:intergenic | 40.0% | |
| !! | ATACCTGTTCGGTGGATTTT+AGG | - | chr3_1:86676582-86676601 | None:intergenic | 40.0% |
| ATTGAAGAATACCTGTTCGG+TGG | - | chr3_1:86676590-86676609 | None:intergenic | 40.0% | |
| CAAAAGGGAGAATGGTTATC+AGG | + | chr3_1:86676771-86676790 | Msa0383680:CDS | 40.0% | |
| AAGCCAGAGAATTTCATTCC+AGG | + | chr3_1:86676801-86676820 | Msa0383680:CDS | 40.0% | |
| AGACCTGGAATGAAATTCTC+TGG | - | chr3_1:86676807-86676826 | None:intergenic | 40.0% | |
| ! | TTCATTCCAGGTCTTGTCAT+TGG | + | chr3_1:86676813-86676832 | Msa0383680:CDS | 40.0% |
| ATGAAACCAATGACAAGACC+TGG | - | chr3_1:86676822-86676841 | None:intergenic | 40.0% | |
| !!! | AGAGAGTTGGTTTTGAAGCT+TGG | - | chr3_1:86676913-86676932 | None:intergenic | 40.0% |
| CATTAGTTGAGACAGAGAGT+TGG | - | chr3_1:86676926-86676945 | None:intergenic | 40.0% | |
| CAACTCTCTGTCTCAACTAA+TGG | + | chr3_1:86676924-86676943 | Msa0383680:CDS | 40.0% | |
| TCACTTTCTCATACTATGGC+CGG | + | chr3_1:86676983-86677002 | Msa0383680:intron | 40.0% | |
| ! | TCCCTACGAACTTCTTTTAC+TGG | + | chr3_1:86677458-86677477 | Msa0383680:intron | 40.0% |
| ! | TGTATCAGGTTCTGGTTGTT+AGG | + | chr3_1:86677517-86677536 | Msa0383680:intron | 40.0% |
| CGTTAATTCAGCATACATGC+CGG | - | chr3_1:86677739-86677758 | None:intergenic | 40.0% | |
| TGTATGCTGAATTAACGCGA+AGG | + | chr3_1:86677742-86677761 | Msa0383680:CDS | 40.0% | |
| ATCATGAAACCGATGTTGGT+AGG | - | chr3_1:86677782-86677801 | None:intergenic | 40.0% | |
| !!! | ACCGGTCTCTTTTAAGACAT+TGG | + | chr3_1:86678199-86678218 | Msa0383680:CDS | 40.0% |
| CCCAATGTCTTAAAAGAGAC+CGG | - | chr3_1:86678203-86678222 | None:intergenic | 40.0% | |
| !!! | CCGGTCTCTTTTAAGACATT+GGG | + | chr3_1:86678200-86678219 | Msa0383680:CDS | 40.0% |
| TTAAGACATTGGGAACAGTG+CGG | + | chr3_1:86678210-86678229 | Msa0383680:CDS | 40.0% | |
| ! | AAGTCACAACAATTTTGGGC+TGG | - | chr3_1:86678236-86678255 | None:intergenic | 40.0% |
| CATCTGCTTACATTTCCTGT+TGG | - | chr3_1:86678266-86678285 | None:intergenic | 40.0% | |
| CATCGGAGACAACAAAAGTA+GGG | - | chr3_1:86678396-86678415 | None:intergenic | 40.0% | |
| ACTGCTAATCGCAACTTCTT+AGG | + | chr3_1:86678522-86678541 | Msa0383680:intron | 40.0% | |
| GAGTGTGAGGAGATGAAATT+CGG | - | chr3_1:86678564-86678583 | None:intergenic | 40.0% | |
| GTTAGGAACATGCCTTAACT+AGG | + | chr3_1:86678607-86678626 | Msa0383680:intron | 40.0% | |
| AAATAGGCCAAGCAATCAAG+TGG | + | chr3_1:86678642-86678661 | Msa0383680:intron | 40.0% | |
| AATAGGCCAAGCAATCAAGT+GGG | + | chr3_1:86678643-86678662 | Msa0383680:intron | 40.0% | |
| ACCTGAAGATGACAGATACT+GGG | - | chr3_1:86678884-86678903 | None:intergenic | 40.0% | |
| AACCTGAAGATGACAGATAC+TGG | - | chr3_1:86678885-86678904 | None:intergenic | 40.0% | |
| ! | TCAAAGACTGTTCTTGCTGT+TGG | + | chr3_1:86678914-86678933 | Msa0383680:CDS | 40.0% |
| AAAGCAACACAAAGCTAACC+AGG | - | chr3_1:86678941-86678960 | None:intergenic | 40.0% | |
| GATGTTCATGCACATGCTAT+TGG | - | chr3_1:86679006-86679025 | None:intergenic | 40.0% | |
| GGATTTGAATGTTGCTCTCT+TGG | + | chr3_1:86679045-86679064 | Msa0383680:intron | 40.0% | |
| ! | TGCTCTCTTGGATTTGTTTC+AGG | + | chr3_1:86679057-86679076 | Msa0383680:intron | 40.0% |
| ! | GCTCTCTTGGATTTGTTTCA+GGG | + | chr3_1:86679058-86679077 | Msa0383680:intron | 40.0% |
| GCCAAAAGCAATTCTGGATT+CGG | + | chr3_1:86679080-86679099 | Msa0383680:CDS | 40.0% | |
| ! | ACCGAATCCAGAATTGCTTT+TGG | - | chr3_1:86679084-86679103 | None:intergenic | 40.0% |
| GTTAACCTATGGTCTGTCTT+CGG | + | chr3_1:86679178-86679197 | Msa0383680:three_prime_UTR | 40.0% | |
| TTAACCTATGGTCTGTCTTC+GGG | + | chr3_1:86679179-86679198 | Msa0383680:three_prime_UTR | 40.0% | |
| TGCTATGTTCTTATCCGGTC+TGG | - | chr3_1:86676510-86676529 | None:intergenic | 45.0% | |
| !! | CTGTTCGGTGGATTTTAGGT+TGG | - | chr3_1:86676578-86676597 | None:intergenic | 45.0% |
| CAACCTAAAATCCACCGAAC+AGG | + | chr3_1:86676576-86676595 | Msa0383680:CDS | 45.0% | |
| !!! | GAGTTGGTTTTGAAGCTTGG+TGG | - | chr3_1:86676910-86676929 | None:intergenic | 45.0% |
| AAGCCAACACAACACCTACA+TGG | + | chr3_1:86677063-86677082 | Msa0383680:intron | 45.0% | |
| ! | TAGCCATGTAGGTGTTGTGT+TGG | - | chr3_1:86677069-86677088 | None:intergenic | 45.0% |
| ACAAATGTTATGAGGAGGGG+AGG | + | chr3_1:86677414-86677433 | Msa0383680:intron | 45.0% | |
| ! | TACTAGCCTGTGCCTTTACA+TGG | + | chr3_1:86677682-86677701 | Msa0383680:intron | 45.0% |
| TAATTCAGCATACATGCCGG+TGG | - | chr3_1:86677736-86677755 | None:intergenic | 45.0% | |
| ACCAATCCACCTACCAACAT+CGG | + | chr3_1:86677770-86677789 | Msa0383680:intron | 45.0% | |
| ! | ATGAAACCGATGTTGGTAGG+TGG | - | chr3_1:86677779-86677798 | None:intergenic | 45.0% |
| ! | TGTGACTTGCAAGAACCAAC+AGG | + | chr3_1:86678248-86678267 | Msa0383680:CDS | 45.0% |
| !! | TCCTGACCTGGATTTTGATC+AGG | + | chr3_1:86678335-86678354 | Msa0383680:intron | 45.0% |
| TCCTGATCAAAATCCAGGTC+AGG | - | chr3_1:86678339-86678358 | None:intergenic | 45.0% | |
| GCATCGGAGACAACAAAAGT+AGG | - | chr3_1:86678397-86678416 | None:intergenic | 45.0% | |
| !! | ACTTTTGTTGTCTCCGATGC+AGG | + | chr3_1:86678397-86678416 | Msa0383680:CDS | 45.0% |
| ATAGGCCAAGCAATCAAGTG+GGG | + | chr3_1:86678644-86678663 | Msa0383680:intron | 45.0% | |
| ! | TGCTGTTATTTACGCACCGT+TGG | + | chr3_1:86678676-86678695 | Msa0383680:intron | 45.0% |
| AGACCAAGCTGTTGAACTCA+TGG | + | chr3_1:86678765-86678784 | Msa0383680:intron | 45.0% | |
| GACCAAGCTGTTGAACTCAT+GGG | + | chr3_1:86678766-86678785 | Msa0383680:intron | 45.0% | |
| ACCCAGTATCTGTCATCTTC+AGG | + | chr3_1:86678880-86678899 | Msa0383680:intron | 45.0% | |
| ! | TGTCATCTTCAGGTTTCAGC+AGG | + | chr3_1:86678890-86678909 | Msa0383680:intron | 45.0% |
| TTCAGGGCCAAAAGCAATTC+TGG | + | chr3_1:86679074-86679093 | Msa0383680:intron | 45.0% | |
| ! | CTGGCTGATTTATCACGCTA+TGG | - | chr3_1:86679153-86679172 | None:intergenic | 45.0% |
| CATAGCGTGATAAATCAGCC+AGG | + | chr3_1:86679151-86679170 | Msa0383680:three_prime_UTR | 45.0% | |
| !! | AGCCAGGCTTTGTTAACCTA+TGG | + | chr3_1:86679167-86679186 | Msa0383680:three_prime_UTR | 45.0% |
| GACCATAGGTTAACAAAGCC+TGG | - | chr3_1:86679172-86679191 | None:intergenic | 45.0% | |
| GCATACTTCAGTGACCAGAC+CGG | + | chr3_1:86676493-86676512 | Msa0383680:five_prime_UTR | 50.0% | |
| CAACACCTACATGGCTACAC+CGG | + | chr3_1:86677072-86677091 | Msa0383680:intron | 50.0% | |
| TGTTACCGGTGTAGCCATGT+AGG | - | chr3_1:86677080-86677099 | None:intergenic | 50.0% | |
| ! | ACCGATGTTGGTAGGTGGAT+TGG | - | chr3_1:86677774-86677793 | None:intergenic | 50.0% |
| CAGAGACATGAATCCTGACC+TGG | + | chr3_1:86678323-86678342 | Msa0383680:intron | 50.0% | |
| TAAGCTCAAGGAAGCAGCTG+AGG | + | chr3_1:86678360-86678379 | Msa0383680:CDS | 50.0% | |
| AAGCTCAAGGAAGCAGCTGA+GGG | + | chr3_1:86678361-86678380 | Msa0383680:CDS | 50.0% | |
| ! | AAGGAAGCAGCTGAGGGTAT+TGG | + | chr3_1:86678367-86678386 | Msa0383680:CDS | 50.0% |
| !! | AGGAAGCAGCTGAGGGTATT+GGG | + | chr3_1:86678368-86678387 | Msa0383680:CDS | 50.0% |
| TACCTGTGTTCGTCCTGCAT+CGG | - | chr3_1:86678413-86678432 | None:intergenic | 50.0% | |
| GCTAACCCCACTTGATTGCT+TGG | - | chr3_1:86678652-86678671 | None:intergenic | 50.0% | |
| ATAGAGGGGCAGCGAAAGAA+AGG | + | chr3_1:86678713-86678732 | Msa0383680:intron | 50.0% | |
| TAGAGGGGCAGCGAAAGAAA+GGG | + | chr3_1:86678714-86678733 | Msa0383680:intron | 50.0% | |
| CTCCCATGAGTTCAACAGCT+TGG | - | chr3_1:86678771-86678790 | None:intergenic | 50.0% | |
| !! | ACTGTTCTTGCTGTTGGACC+TGG | + | chr3_1:86678920-86678939 | Msa0383680:CDS | 50.0% |
| !! | GCAATTCTGGATTCGGTGAC+TGG | + | chr3_1:86679087-86679106 | Msa0383680:CDS | 50.0% |
| !! | TTCTGGATTCGGTGACTGGA+AGG | + | chr3_1:86679091-86679110 | Msa0383680:CDS | 50.0% |
| TGTATGGCAGATGCTGCCAC+CGG | + | chr3_1:86677717-86677736 | Msa0383680:intron | 55.0% | |
| !! | GGATTCGGTGACTGGAAGGT+TGG | + | chr3_1:86679095-86679114 | Msa0383680:CDS | 55.0% |
| CTCCGATGCAGGACGAACAC+AGG | + | chr3_1:86678408-86678427 | Msa0383680:CDS | 60.0% | |
| CGTGCCCGAAGACAGACCAT+AGG | - | chr3_1:86679186-86679205 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 86676453 | 86679317 | 86676453 | ID=Msa0383680;Name=Msa0383680 |
| chr3_1 | mRNA | 86676453 | 86679317 | 86676453 | ID=Msa0383680-mRNA-1;Parent=Msa0383680;Name=Msa0383680-mRNA-1;_AED=0.23;_eAED=0.23;_QI=115|1|1|1|1|1|8|189|193 |
| chr3_1 | exon | 86676453 | 86676597 | 86676453 | ID=Msa0383680-mRNA-1:exon:22955;Parent=Msa0383680-mRNA-1 |
| chr3_1 | exon | 86676756 | 86676968 | 86676756 | ID=Msa0383680-mRNA-1:exon:22956;Parent=Msa0383680-mRNA-1 |
| chr3_1 | exon | 86677525 | 86677585 | 86677525 | ID=Msa0383680-mRNA-1:exon:22957;Parent=Msa0383680-mRNA-1 |
| chr3_1 | exon | 86677727 | 86677763 | 86677727 | ID=Msa0383680-mRNA-1:exon:22958;Parent=Msa0383680-mRNA-1 |
| chr3_1 | exon | 86678197 | 86678274 | 86678197 | ID=Msa0383680-mRNA-1:exon:22959;Parent=Msa0383680-mRNA-1 |
| chr3_1 | exon | 86678357 | 86678429 | 86678357 | ID=Msa0383680-mRNA-1:exon:22960;Parent=Msa0383680-mRNA-1 |
| chr3_1 | exon | 86678902 | 86678941 | 86678902 | ID=Msa0383680-mRNA-1:exon:22961;Parent=Msa0383680-mRNA-1 |
| chr3_1 | exon | 86679079 | 86679317 | 86679079 | ID=Msa0383680-mRNA-1:exon:22962;Parent=Msa0383680-mRNA-1 |
| chr3_1 | five_prime_UTR | 86676453 | 86676567 | 86676453 | ID=Msa0383680-mRNA-1:five_prime_utr;Parent=Msa0383680-mRNA-1 |
| chr3_1 | CDS | 86676568 | 86676597 | 86676568 | ID=Msa0383680-mRNA-1:cds;Parent=Msa0383680-mRNA-1 |
| chr3_1 | CDS | 86676756 | 86676968 | 86676756 | ID=Msa0383680-mRNA-1:cds;Parent=Msa0383680-mRNA-1 |
| chr3_1 | CDS | 86677525 | 86677585 | 86677525 | ID=Msa0383680-mRNA-1:cds;Parent=Msa0383680-mRNA-1 |
| chr3_1 | CDS | 86677727 | 86677763 | 86677727 | ID=Msa0383680-mRNA-1:cds;Parent=Msa0383680-mRNA-1 |
| chr3_1 | CDS | 86678197 | 86678274 | 86678197 | ID=Msa0383680-mRNA-1:cds;Parent=Msa0383680-mRNA-1 |
| chr3_1 | CDS | 86678357 | 86678429 | 86678357 | ID=Msa0383680-mRNA-1:cds;Parent=Msa0383680-mRNA-1 |
| chr3_1 | CDS | 86678902 | 86678941 | 86678902 | ID=Msa0383680-mRNA-1:cds;Parent=Msa0383680-mRNA-1 |
| chr3_1 | CDS | 86679079 | 86679128 | 86679079 | ID=Msa0383680-mRNA-1:cds;Parent=Msa0383680-mRNA-1 |
| chr3_1 | three_prime_UTR | 86679129 | 86679317 | 86679129 | ID=Msa0383680-mRNA-1:three_prime_utr;Parent=Msa0383680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
