AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0030730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0030730 MtrunA17_Chr1g0188261 83.117 385 9 3 6 343 4 379 0.0 633
Msa0030730 MtrunA17_Chr1g0210231 63.602 261 94 1 68 327 141 401 4.00e-109 333
Msa0030730 MtrunA17_Chr8g0360481 59.542 262 105 1 64 324 119 380 8.31e-107 326
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0030730 AT1G33290.3 79.856 278 56 0 63 340 24 301 1.26e-167 469
Msa0030730 AT1G33290.1 79.856 278 56 0 63 340 98 375 1.80e-166 469
Msa0030730 AT3G10420.1 61.832 262 99 1 64 324 148 409 4.71e-108 326
Msa0030730 AT3G10420.2 61.832 262 99 1 64 324 148 409 3.52e-107 328
Msa0030730 AT1G73170.1 55.477 283 124 2 64 344 132 414 8.36e-104 319
Msa0030730 AT1G73170.3 55.477 283 124 2 64 344 132 414 1.33e-103 318
Msa0030730 AT1G73170.2 56.089 271 117 2 76 344 16 286 1.09e-101 310
Msa0030730 AT1G33290.2 80.992 121 23 0 63 183 98 218 2.97e-64 206
Msa0030730 AT1G33290.2 76.190 84 20 0 257 340 216 299 1.71e-38 139
Msa0030730 AT1G73170.4 47.857 140 71 2 207 344 1 140 1.72e-33 128

Find 93 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGGAGCAGTTGGAGATTT+TGG 0.126961 1_1:+57152171 Msa0030730:CDS
GAGCGAGGCATCATGCTTAT+AGG 0.265973 1_1:+57153413 Msa0030730:CDS
CGACCTCCATGCTCTCTTAC+AGG 0.299334 1_1:+57151469 Msa0030730:CDS
ATCACCTCCAATTTCATTAC+TGG 0.299857 1_1:-57153222 None:intergenic
GTTGATACCAGTAATGAAAT+TGG 0.304856 1_1:+57153215 Msa0030730:CDS
TGGGTTTATAAATTATATTA+TGG 0.317072 1_1:-57155786 None:intergenic
GTTTATGATCTGCTTCAATA+TGG 0.323340 1_1:+57152318 Msa0030730:CDS
CCTCAATCAAGAAAAGTTAA+TGG 0.335708 1_1:-57156047 None:intergenic
ATCACGCTATGTTGCATTGA+TGG 0.341246 1_1:-57153299 None:intergenic
AGTAGGAATGGTGGCATTGT+TGG 0.363900 1_1:+57152249 Msa0030730:CDS
AACACAATTTACAAAATGAA+TGG 0.363945 1_1:-57155806 None:intergenic
GATCATAAACCATGTCAATA+TGG 0.372234 1_1:-57152305 None:intergenic
AGCGAGGCATCATGCTTATA+GGG 0.403823 1_1:+57153414 Msa0030730:CDS
AGGGGAACTGGGGATAAGGG+TGG 0.406703 1_1:+57151270 Msa0030730:five_prime_UTR
TGCACAGAATATCAGCAATA+AGG 0.410002 1_1:+57152226 Msa0030730:CDS
AAAAGGGGAACTGGGGATAA+GGG 0.412843 1_1:+57151267 Msa0030730:five_prime_UTR
GACAAACCTAGGTGTTAGTA+TGG 0.422069 1_1:-57155928 None:intergenic
CGGCATAGCATTTGAATTTG+AGG 0.430174 1_1:-57151394 None:intergenic
GGCATGTTGGTCATGTTTGA+TGG 0.431863 1_1:+57151322 Msa0030730:CDS
ACACAATTTACAAAATGAAT+GGG 0.435255 1_1:-57155805 None:intergenic
TTGGTTTGACGTGTCGGATT+GGG 0.436479 1_1:+57152268 Msa0030730:CDS
CATTTGCTTTATTAGATTGG+TGG 0.439996 1_1:+57153996 Msa0030730:intron
AATATTCCTCATGCAGCAAT+AGG 0.447097 1_1:+57153248 Msa0030730:CDS
ATACTAACACCTAGGTTTGT+CGG 0.449041 1_1:+57155930 Msa0030730:three_prime_UTR
TATAAATTATATTATGGAAA+GGG 0.452150 1_1:-57155780 None:intergenic
GATAATAGAGCTGGTATTGA+AGG 0.452494 1_1:+57152198 Msa0030730:CDS
GGCATAGCATTTGAATTTGA+GGG 0.454237 1_1:-57151393 None:intergenic
TGTGACTGTGACTGTGGCTG+TGG 0.468210 1_1:-57151425 None:intergenic
AGGCAAGACCCCACAGGTTG+AGG 0.471366 1_1:+57154865 Msa0030730:CDS
CGGATTGGGAGGGCTGTCAC+TGG 0.472439 1_1:+57152282 Msa0030730:CDS
ACACTACTGGGTTACACATC+AGG 0.473781 1_1:+57154133 Msa0030730:CDS
GATTCTTCCAGGCCTGGGGT+TGG 0.476303 1_1:+57153029 Msa0030730:intron
TACTAACACCTAGGTTTGTC+GGG 0.487669 1_1:+57155931 Msa0030730:three_prime_UTR
GTTGGTTTGACGTGTCGGAT+TGG 0.489931 1_1:+57152267 Msa0030730:CDS
AGATGAGAGATAGACACTAC+TGG 0.502286 1_1:+57154120 Msa0030730:CDS
AGTAATGAAATTGGAGGTGA+TGG 0.508241 1_1:+57153224 Msa0030730:CDS
GCATTGTTGGTTTGACGTGT+CGG 0.509058 1_1:+57152262 Msa0030730:CDS
GTTTGACGTGTCGGATTGGG+AGG 0.510749 1_1:+57152271 Msa0030730:CDS
CCTAGGTGTTAGTATGGTAA+TGG 0.511636 1_1:-57155922 None:intergenic
TGGAATTGAAAGTGTTACTC+TGG 0.516865 1_1:+57154016 Msa0030730:CDS
GTGATTATAGTAGATGAGAT+TGG 0.517092 1_1:+57153353 Msa0030730:CDS
GTAGTACCTGTAAGAGAGCA+TGG 0.518332 1_1:-57151475 None:intergenic
TCATCTACTATAATCACCTC+AGG 0.528346 1_1:-57153347 None:intergenic
CAGCAACAACAGCAGCATCA+TGG 0.530280 1_1:+57151351 Msa0030730:CDS
GAATATGCTGAAGGAGCAGT+TGG 0.530400 1_1:+57152162 Msa0030730:CDS
TTATAAATTATATTATGGAA+AGG 0.537273 1_1:-57155781 None:intergenic
ACAGTAGTCTTGCCAACCCC+AGG 0.537874 1_1:-57153041 None:intergenic
GCTATGTTGCATTGATGGCT+CGG 0.540454 1_1:-57153294 None:intergenic
TCAATCAAGAAATCAAATGT+TGG 0.540516 1_1:-57154098 None:intergenic
CTAGGTAACAGTGAGAGAGT+TGG 0.544848 1_1:+57152140 Msa0030730:intron
TTTGGGAAGGATAATAGAGC+TGG 0.546805 1_1:+57152189 Msa0030730:CDS
AAATTATATTATGGAAAGGG+AGG 0.547372 1_1:-57155777 None:intergenic
ATGCTTATAGGGACTGCTCA+TGG 0.547544 1_1:+57153425 Msa0030730:CDS
TTGTTTGTCCCGACAAACCT+AGG 0.552415 1_1:-57155939 None:intergenic
AGGTGGTGCACGTAGAATGC+AGG 0.554707 1_1:+57153268 Msa0030730:CDS
TTTGGATTCTTCCAGGCCTG+GGG 0.555222 1_1:+57153025 Msa0030730:intron
GCAACATAGCGTGATGATTG+AGG 0.555819 1_1:+57153307 Msa0030730:CDS
GAATCCTACGCTCTCTGACC+TGG 0.561221 1_1:+57153472 Msa0030730:CDS
TGCCTCGCTCAGCAATCGAC+CGG 0.568637 1_1:-57153400 None:intergenic
AGCGTAGATATATTGCTTCG+AGG 0.569413 1_1:+57154845 Msa0030730:CDS
GAATATCAGCAATAAGGAGT+AGG 0.577619 1_1:+57152232 Msa0030730:CDS
TGCCGGTCGATTGCTGAGCG+AGG 0.579543 1_1:+57153398 Msa0030730:CDS
GCTTCGAGGCAAGACCCCAC+AGG 0.579998 1_1:+57154859 Msa0030730:CDS
CATTTGAATTTGAGGGTCGG+TGG 0.585953 1_1:-57151386 None:intergenic
GGGGAACTGGGGATAAGGGT+GGG 0.586739 1_1:+57151271 Msa0030730:five_prime_UTR
AAGCTGAAGCTCATGCATGC+CGG 0.588992 1_1:+57153381 Msa0030730:CDS
TGTCACTGGCCATATTGACA+TGG 0.589779 1_1:+57152296 Msa0030730:CDS
TTTGACGTGTCGGATTGGGA+GGG 0.591021 1_1:+57152272 Msa0030730:CDS
ATCAAGAAATCAAATGTTGG+AGG 0.591943 1_1:-57154095 None:intergenic
TCAGCAATAAGGAGTAGGAA+TGG 0.597931 1_1:+57152237 Msa0030730:CDS
GAAGAATTACCTCAACCTGT+GGG 0.599084 1_1:-57154874 None:intergenic
TAGCATTTGAATTTGAGGGT+CGG 0.608467 1_1:-57151389 None:intergenic
AGAGAGTTGGAATATGCTGA+AGG 0.615898 1_1:+57152153 Msa0030730:CDS
CCATTACCATACTAACACCT+AGG 0.616662 1_1:+57155922 Msa0030730:three_prime_UTR
GTCAGAAGACTATTCTTGAG+AGG 0.618967 1_1:+57154066 Msa0030730:CDS
CTGCAAATGCAATGGCATGT+TGG 0.621228 1_1:+57151309 Msa0030730:CDS
GAACACTGTGACTGTGACTG+TGG 0.625091 1_1:-57151431 None:intergenic
GATGAGAGATAGACACTACT+GGG 0.625526 1_1:+57154121 Msa0030730:CDS
ATTCCTCATGCAGCAATAGG+TGG 0.626244 1_1:+57153251 Msa0030730:CDS
AATGATAGCTGCAAATGCAA+TGG 0.628631 1_1:+57151301 Msa0030730:exon
CTGTGGCTGTGGCTGAGTCG+CGG 0.631504 1_1:-57151414 None:intergenic
AGATGAATTTCACAAAAGAG+TGG 0.647161 1_1:+57153091 Msa0030730:CDS
TGAAGAATTACCTCAACCTG+TGG 0.649387 1_1:-57154875 None:intergenic
GCACCACCTATTGCTGCATG+AGG 0.660141 1_1:-57153254 None:intergenic
GGAATTGAAAGTGTTACTCT+GGG 0.661020 1_1:+57154017 Msa0030730:CDS
GCAATAAGGAGTAGGAATGG+TGG 0.666850 1_1:+57152240 Msa0030730:CDS
GATACCAGTAATGAAATTGG+AGG 0.667560 1_1:+57153218 Msa0030730:CDS
CGAACCAGGTCAGAGAGCGT+AGG 0.667831 1_1:-57153476 None:intergenic
AAGAATTACCTCAACCTGTG+GGG 0.683693 1_1:-57154873 None:intergenic
TTAATGGTCTCAGAATCAGA+AGG 0.692795 1_1:-57156031 None:intergenic
GAGAGATAATGCACACACAG+AGG 0.702429 1_1:-57156006 None:intergenic
AGTAGAAAATCATATGCCTG+AGG 0.712015 1_1:+57153331 Msa0030730:CDS
GTACCTGTAAGAGAGCATGG+AGG 0.821434 1_1:-57151472 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGAATCATAAATTATTAAA+AGG + chr1_1:57152941-57152960 Msa0030730:intron 10.0%
!! TATAAATTATATTATGGAAA+GGG - chr1_1:57155783-57155802 None:intergenic 10.0%
!! TTATAAATTATATTATGGAA+AGG - chr1_1:57155784-57155803 None:intergenic 10.0%
!!! TGTTTTAAATTGTTTATATA+TGG - chr1_1:57155879-57155898 None:intergenic 10.0%
!! TAAAACTAAATAAGAAAAGT+GGG - chr1_1:57152033-57152052 None:intergenic 15.0%
!!! CAATTTTATCATCTTATATT+TGG + chr1_1:57152494-57152513 Msa0030730:intron 15.0%
!!! TTATGATTCTATTTTGTTAT+TGG - chr1_1:57152932-57152951 None:intergenic 15.0%
!!! ATTTTGAATTTTATTGTAAC+AGG + chr1_1:57154369-57154388 Msa0030730:intron 15.0%
!! AAAAATTAGTACAATTATCA+GGG - chr1_1:57154531-57154550 None:intergenic 15.0%
!! TAAAAATTAGTACAATTATC+AGG - chr1_1:57154532-57154551 None:intergenic 15.0%
!!! GTTATAATTTTAACTTTCTA+GGG - chr1_1:57155583-57155602 None:intergenic 15.0%
!!! TGTTATAATTTTAACTTTCT+AGG - chr1_1:57155584-57155603 None:intergenic 15.0%
!! TGGGTTTATAAATTATATTA+TGG - chr1_1:57155789-57155808 None:intergenic 15.0%
!!! GTTTTTTTTAAGACATTAAG+AGG + chr1_1:57151217-57151236 Msa0030730:five_prime_UTR 20.0%
!! AAAAAAGAAAGTTGTAAGAA+AGG - chr1_1:57151525-57151544 None:intergenic 20.0%
!! ACAAAGAGAGATAAATAATA+GGG - chr1_1:57151630-57151649 None:intergenic 20.0%
!! AACAAAGAGAGATAAATAAT+AGG - chr1_1:57151631-57151650 None:intergenic 20.0%
!! TATAGTATAGTATACTATGT+CGG - chr1_1:57151753-57151772 None:intergenic 20.0%
!! TCTAACTCATTATTACAAAA+CGG - chr1_1:57151946-57151965 None:intergenic 20.0%
!! CTAAAACTAAATAAGAAAAG+TGG - chr1_1:57152034-57152053 None:intergenic 20.0%
!!! TAAACTAAGCTTTAGAAATT+AGG - chr1_1:57152395-57152414 None:intergenic 20.0%
!! GCTGTTAATTGTAATATATT+TGG + chr1_1:57152575-57152594 Msa0030730:intron 20.0%
!!! ATTAAATCTGTTTTATCTTG+TGG - chr1_1:57152683-57152702 None:intergenic 20.0%
!! TACCATTTATAATAGATCAT+GGG - chr1_1:57152876-57152895 None:intergenic 20.0%
!! TTACCATTTATAATAGATCA+TGG - chr1_1:57152877-57152896 None:intergenic 20.0%
!! TAGAATGAATTCTTTCAAAT+TGG + chr1_1:57153182-57153201 Msa0030730:intron 20.0%
!! AGAATGAATTCTTTCAAATT+GGG + chr1_1:57153183-57153202 Msa0030730:intron 20.0%
!! GGAAAAATCTTATAGATTAT+TGG - chr1_1:57153524-57153543 None:intergenic 20.0%
!! AAACCATAATAAATTCGTAA+AGG - chr1_1:57153736-57153755 None:intergenic 20.0%
!!! GGTAACTATATCTTATTTTA+TGG + chr1_1:57153805-57153824 Msa0030730:intron 20.0%
!! ATGTATGTCAAATATGAAAA+TGG - chr1_1:57154301-57154320 None:intergenic 20.0%
!! TTTCATATTTGACATACATT+TGG + chr1_1:57154302-57154321 Msa0030730:intron 20.0%
!! ACAATGTTATTAACAGAAAA+CGG - chr1_1:57154503-57154522 None:intergenic 20.0%
!! AATCAAATAGTCATTTCATT+TGG - chr1_1:57155030-57155049 None:intergenic 20.0%
!!! TGAAATGACTATTTGATTTT+TGG + chr1_1:57155032-57155051 Msa0030730:intron 20.0%
!! AGCATAAATCTTCATATAAT+AGG - chr1_1:57155428-57155447 None:intergenic 20.0%
!!! TATTATTTCTCTTTTACGTT+TGG + chr1_1:57155488-57155507 Msa0030730:intron 20.0%
!! GAATTGATCATTAATACATT+GGG - chr1_1:57155613-57155632 None:intergenic 20.0%
!! TGAATTGATCATTAATACAT+TGG - chr1_1:57155614-57155633 None:intergenic 20.0%
!! ATGTATTAATGATCAATTCA+AGG + chr1_1:57155614-57155633 Msa0030730:intron 20.0%
!! ACACAATTTACAAAATGAAT+GGG - chr1_1:57155808-57155827 None:intergenic 20.0%
!! AACACAATTTACAAAATGAA+TGG - chr1_1:57155809-57155828 None:intergenic 20.0%
! ATAATAAAGAAGTGATGCAT+TGG - chr1_1:57151989-57152008 None:intergenic 25.0%
!! ATAATACTTCAAGTTCTAAC+CGG + chr1_1:57152414-57152433 Msa0030730:intron 25.0%
! TTATATTTGGTCTAAACATC+AGG + chr1_1:57152507-57152526 Msa0030730:intron 25.0%
! TGTAATATATTTGGTCTGTT+TGG + chr1_1:57152584-57152603 Msa0030730:intron 25.0%
!!! AAGCTGTTTTAACAAATTCT+CGG + chr1_1:57152793-57152812 Msa0030730:intron 25.0%
! TTCTTGCATCTCTTATAATT+TGG + chr1_1:57153007-57153026 Msa0030730:intron 25.0%
!!! TGATCTATAACACTACTTTT+AGG - chr1_1:57153154-57153173 None:intergenic 25.0%
!!! ATCTCAACTTTTTAAAAAGG+GGG - chr1_1:57153546-57153565 None:intergenic 25.0%
!!! GATCTCAACTTTTTAAAAAG+GGG - chr1_1:57153547-57153566 None:intergenic 25.0%
!!! GGATCTCAACTTTTTAAAAA+GGG - chr1_1:57153548-57153567 None:intergenic 25.0%
! TCAACTGTGTTTAAAAGAAA+AGG + chr1_1:57153627-57153646 Msa0030730:intron 25.0%
!!! AATAAGCAACATATTGACTT+TGG - chr1_1:57153675-57153694 None:intergenic 25.0%
!! TCAATATGTTGCTTATTTCA+GGG + chr1_1:57153678-57153697 Msa0030730:intron 25.0%
! AATTTAATAACTCTAGTCAG+AGG + chr1_1:57153777-57153796 Msa0030730:intron 25.0%
!! AATGAGTGAAACAAATTTTC+AGG - chr1_1:57153865-57153884 None:intergenic 25.0%
! AATCTAATAAAGCAAATGGA+GGG - chr1_1:57153994-57154013 None:intergenic 25.0%
! TCAATCAAGAAATCAAATGT+TGG - chr1_1:57154101-57154120 None:intergenic 25.0%
!! ACATATTTACATCCTTTTAC+TGG - chr1_1:57154595-57154614 None:intergenic 25.0%
! AAAGGATGTAAATATGTCAT+TGG + chr1_1:57154598-57154617 Msa0030730:intron 25.0%
!!! GATTAGTTTTGTTGATTGTT+TGG + chr1_1:57154667-57154686 Msa0030730:intron 25.0%
! TTATAAGCCAAAATATGAGT+TGG + chr1_1:57154772-57154791 Msa0030730:intron 25.0%
!! CATAAAACCAACTCATATTT+TGG - chr1_1:57154782-57154801 None:intergenic 25.0%
! GCATATCATTCTTGAAAATA+AGG - chr1_1:57154929-57154948 None:intergenic 25.0%
!! GGTATAAACTTATACTTTTG+TGG - chr1_1:57155122-57155141 None:intergenic 25.0%
! TTTACAGTCATTGCAAATTT+GGG - chr1_1:57155258-57155277 None:intergenic 25.0%
!! TTTTACAGTCATTGCAAATT+TGG - chr1_1:57155259-57155278 None:intergenic 25.0%
!! AAACTTATTCCCTGATTTTA+CGG + chr1_1:57155307-57155326 Msa0030730:intron 25.0%
!! TTTTCTGGGTATATTATGAT+AGG - chr1_1:57155556-57155575 None:intergenic 25.0%
! AAATTATATTATGGAAAGGG+AGG - chr1_1:57155780-57155799 None:intergenic 25.0%
GAAAGTTGTAAGAAAGGAAA+TGG - chr1_1:57151519-57151538 None:intergenic 30.0%
! AATTCAATGATGTGTTGTTG+CGG - chr1_1:57151706-57151725 None:intergenic 30.0%
TATAACCTGATGAAGAATGA+AGG - chr1_1:57151794-57151813 None:intergenic 30.0%
CATTCTTCATCAGGTTATAT+TGG + chr1_1:57151795-57151814 Msa0030730:intron 30.0%
TCATCAGGTTATATTGGATT+TGG + chr1_1:57151801-57151820 Msa0030730:intron 30.0%
CATCAGGTTATATTGGATTT+GGG + chr1_1:57151802-57151821 Msa0030730:intron 30.0%
CCTCAGAATTTCTTAGATAA+TGG - chr1_1:57151867-57151886 None:intergenic 30.0%
CCATTATCTAAGAAATTCTG+AGG + chr1_1:57151864-57151883 Msa0030730:intron 30.0%
!! AGAAATTCTGAGGTAAAAGT+AGG + chr1_1:57151874-57151893 Msa0030730:intron 30.0%
!!! AAACGGACTTTTTTAAGATG+TGG - chr1_1:57151929-57151948 None:intergenic 30.0%
AAAAAGAATGCTCTGTTCAA+AGG + chr1_1:57152078-57152097 Msa0030730:intron 30.0%
GATCATAAACCATGTCAATA+TGG - chr1_1:57152308-57152327 None:intergenic 30.0%
GTTTATGATCTGCTTCAATA+TGG + chr1_1:57152318-57152337 Msa0030730:CDS 30.0%
!! AGAGCATTTTATTTCTTGGA+AGG + chr1_1:57152343-57152362 Msa0030730:CDS 30.0%
ATATAGATGTGCATCATTCA+TGG + chr1_1:57152369-57152388 Msa0030730:intron 30.0%
! TTTTGTGTGTGTTAAAGACT+TGG + chr1_1:57152535-57152554 Msa0030730:intron 30.0%
AGCCCATGATCTATTATAAA+TGG + chr1_1:57152871-57152890 Msa0030730:intron 30.0%
CTTATAATTTGGATTCTTCC+AGG + chr1_1:57153018-57153037 Msa0030730:intron 30.0%
AGATGAATTTCACAAAAGAG+TGG + chr1_1:57153091-57153110 Msa0030730:CDS 30.0%
TGAATTCTTTCAAATTGGGT+AGG + chr1_1:57153187-57153206 Msa0030730:intron 30.0%
GTTGATACCAGTAATGAAAT+TGG + chr1_1:57153215-57153234 Msa0030730:CDS 30.0%
GTGATTATAGTAGATGAGAT+TGG + chr1_1:57153353-57153372 Msa0030730:CDS 30.0%
TATGATAATCAAAACGAACC+AGG - chr1_1:57153493-57153512 None:intergenic 30.0%
!! TCTCAACTTTTTAAAAAGGG+GGG - chr1_1:57153545-57153564 None:intergenic 30.0%
!! GGGATCTCAACTTTTTAAAA+AGG - chr1_1:57153549-57153568 None:intergenic 30.0%
TAAATGACTCAATGAAGCTA+GGG - chr1_1:57153569-57153588 None:intergenic 30.0%
ATAAATGACTCAATGAAGCT+AGG - chr1_1:57153570-57153589 None:intergenic 30.0%
!!! GTAGTTGTATCGATTTTATG+TGG + chr1_1:57153649-57153668 Msa0030730:intron 30.0%
! GTCAATATGTTGCTTATTTC+AGG + chr1_1:57153677-57153696 Msa0030730:intron 30.0%
AGGCCTTTACGAATTTATTA+TGG + chr1_1:57153730-57153749 Msa0030730:intron 30.0%
AGAAATTTCATCAGAATGTC+TGG + chr1_1:57153834-57153853 Msa0030730:intron 30.0%
ATCTAATAAAGCAAATGGAG+GGG - chr1_1:57153993-57154012 None:intergenic 30.0%
CAATCTAATAAAGCAAATGG+AGG - chr1_1:57153995-57154014 None:intergenic 30.0%
! CTCCATTTGCTTTATTAGAT+TGG + chr1_1:57153993-57154012 Msa0030730:intron 30.0%
CACCAATCTAATAAAGCAAA+TGG - chr1_1:57153998-57154017 None:intergenic 30.0%
! CATTTGCTTTATTAGATTGG+TGG + chr1_1:57153996-57154015 Msa0030730:intron 30.0%
ATCAAGAAATCAAATGTTGG+AGG - chr1_1:57154098-57154117 None:intergenic 30.0%
! ATTTGACATACATTTGGTGA+AGG + chr1_1:57154308-57154327 Msa0030730:intron 30.0%
! TTTGACATACATTTGGTGAA+GGG + chr1_1:57154309-57154328 Msa0030730:intron 30.0%
! CCATATAACAATATGATGGA+TGG - chr1_1:57154456-57154475 None:intergenic 30.0%
CCATCCATCATATTGTTATA+TGG + chr1_1:57154453-57154472 Msa0030730:intron 30.0%
TCAGCCATATAACAATATGA+TGG - chr1_1:57154460-57154479 None:intergenic 30.0%
TGTTATTAACAGAAAACGGT+GGG - chr1_1:57154499-57154518 None:intergenic 30.0%
ATGTTATTAACAGAAAACGG+TGG - chr1_1:57154500-57154519 None:intergenic 30.0%
! AATCGTCTAAAATATGATGC+AGG - chr1_1:57154651-57154670 None:intergenic 30.0%
CGCTTAAAAATTTAGTCTAG+TGG + chr1_1:57154696-57154715 Msa0030730:intron 30.0%
! TTAGTCTAGTGGAATTGTTT+TGG + chr1_1:57154707-57154726 Msa0030730:intron 30.0%
! CAATATATCTACGCTTTTGT+CGG - chr1_1:57154840-57154859 None:intergenic 30.0%
!!! GACTATTTGATTTTTGGTTG+AGG + chr1_1:57155038-57155057 Msa0030730:intron 30.0%
GTATAAGTTTATACCTAGCA+TGG + chr1_1:57155127-57155146 Msa0030730:intron 30.0%
TAATGTAATCCTAGTTTGGA+CGG - chr1_1:57155195-57155214 None:intergenic 30.0%
ACACTAATGTAATCCTAGTT+TGG - chr1_1:57155199-57155218 None:intergenic 30.0%
TTACAGTCATTGCAAATTTG+GGG - chr1_1:57155257-57155276 None:intergenic 30.0%
! AAATCAGGGAATAAGTTTTG+TGG - chr1_1:57155305-57155324 None:intergenic 30.0%
ATGTAACTTCCGTAAAATCA+GGG - chr1_1:57155319-57155338 None:intergenic 30.0%
TATGTAACTTCCGTAAAATC+AGG - chr1_1:57155320-57155339 None:intergenic 30.0%
TGCTTTCATTAACTTCACAT+TGG + chr1_1:57155379-57155398 Msa0030730:intron 30.0%
GCTTTCATTAACTTCACATT+GGG + chr1_1:57155380-57155399 Msa0030730:intron 30.0%
ATATGAAGATTTATGCTCCA+AGG + chr1_1:57155431-57155450 Msa0030730:intron 30.0%
! TTTGGTTCATAAATATGCTC+TGG + chr1_1:57155506-57155525 Msa0030730:intron 30.0%
ATAAATATGCTCTGGTCATA+TGG + chr1_1:57155514-57155533 Msa0030730:intron 30.0%
TCATAATATACCCAGAAAAG+AGG + chr1_1:57155557-57155576 Msa0030730:intron 30.0%
AAAAAGAGATGAGAAATGCA+AGG + chr1_1:57155706-57155725 Msa0030730:CDS 30.0%
CCTCAATCAAGAAAAGTTAA+TGG - chr1_1:57156050-57156069 None:intergenic 30.0%
! CCATTAACTTTTCTTGATTG+AGG + chr1_1:57156047-57156066 Msa0030730:three_prime_UTR 30.0%
TGACTATTACCCGTGAAAAA+AGG + chr1_1:57151250-57151269 Msa0030730:five_prime_UTR 35.0%
GACTATTACCCGTGAAAAAA+GGG + chr1_1:57151251-57151270 Msa0030730:five_prime_UTR 35.0%
ACTATTACCCGTGAAAAAAG+GGG + chr1_1:57151252-57151271 Msa0030730:five_prime_UTR 35.0%
AATGATAGCTGCAAATGCAA+TGG + chr1_1:57151301-57151320 Msa0030730:exon 35.0%
TAGCATTTGAATTTGAGGGT+CGG - chr1_1:57151392-57151411 None:intergenic 35.0%
GGCATAGCATTTGAATTTGA+GGG - chr1_1:57151396-57151415 None:intergenic 35.0%
AGAAAGGAAATGGTTGAGAA+TGG - chr1_1:57151509-57151528 None:intergenic 35.0%
AGATTGTGATGCAAATCTGA+AGG - chr1_1:57151567-57151586 None:intergenic 35.0%
TTGAACCTTCATTCTTCATC+AGG + chr1_1:57151786-57151805 Msa0030730:intron 35.0%
GCTCTTCATAAACTCTAATC+CGG - chr1_1:57151900-57151919 None:intergenic 35.0%
TTGTGATATGATCTCATGTG+TGG + chr1_1:57152105-57152124 Msa0030730:intron 35.0%
! GATAATAGAGCTGGTATTGA+AGG + chr1_1:57152198-57152217 Msa0030730:CDS 35.0%
TGCACAGAATATCAGCAATA+AGG + chr1_1:57152226-57152245 Msa0030730:CDS 35.0%
GAATATCAGCAATAAGGAGT+AGG + chr1_1:57152232-57152251 Msa0030730:CDS 35.0%
!!! GGCAAGAGCATTTTATTTCT+TGG + chr1_1:57152339-57152358 Msa0030730:CDS 35.0%
! CCGATTTCATTTCAAGTATC+CGG - chr1_1:57152436-57152455 None:intergenic 35.0%
CCGGATACTTGAAATGAAAT+CGG + chr1_1:57152433-57152452 Msa0030730:intron 35.0%
GATACCAGTAATGAAATTGG+AGG + chr1_1:57153218-57153237 Msa0030730:CDS 35.0%
ATCACCTCCAATTTCATTAC+TGG - chr1_1:57153225-57153244 None:intergenic 35.0%
AGTAATGAAATTGGAGGTGA+TGG + chr1_1:57153224-57153243 Msa0030730:CDS 35.0%
AATATTCCTCATGCAGCAAT+AGG + chr1_1:57153248-57153267 Msa0030730:CDS 35.0%
AGTAGAAAATCATATGCCTG+AGG + chr1_1:57153331-57153350 Msa0030730:CDS 35.0%
TCATCTACTATAATCACCTC+AGG - chr1_1:57153350-57153369 None:intergenic 35.0%
TTGCTTATTTCAGGGTCTAA+AGG + chr1_1:57153686-57153705 Msa0030730:intron 35.0%
TTGTTTCACTCATTCAGTTG+AGG + chr1_1:57153871-57153890 Msa0030730:intron 35.0%
TTAAAGACATGCTTGATGTG+TGG + chr1_1:57153922-57153941 Msa0030730:intron 35.0%
!! TGGAATTGAAAGTGTTACTC+TGG + chr1_1:57154016-57154035 Msa0030730:CDS 35.0%
!! GGAATTGAAAGTGTTACTCT+GGG + chr1_1:57154017-57154036 Msa0030730:CDS 35.0%
AATTAGTAACAAAGAGACCG+TGG + chr1_1:57154259-57154278 Msa0030730:intron 35.0%
GACTATCCAATTATTCACCA+CGG - chr1_1:57154279-57154298 None:intergenic 35.0%
!! AAAAAAAAGTGCTGCCACAA+TGG + chr1_1:57154551-57154570 Msa0030730:intron 35.0%
GTATAGATGACAAACCATTG+TGG - chr1_1:57154568-57154587 None:intergenic 35.0%
! CAATGGTTTGTCATCTATAC+CGG + chr1_1:57154568-57154587 Msa0030730:intron 35.0%
! AATGGTTTGTCATCTATACC+GGG + chr1_1:57154569-57154588 Msa0030730:intron 35.0%
TGGTTGAGGTTTAGATGAAA+AGG + chr1_1:57155052-57155071 Msa0030730:intron 35.0%
AAGTTTATACCTAGCATGGT+TGG + chr1_1:57155131-57155150 Msa0030730:intron 35.0%
AATGTAATCCTAGTTTGGAC+GGG - chr1_1:57155194-57155213 None:intergenic 35.0%
ACTAGGATTACATTAGTGTG+TGG + chr1_1:57155200-57155219 Msa0030730:intron 35.0%
! AGCATACATGTTGCATGTTT+TGG - chr1_1:57155363-57155382 None:intergenic 35.0%
!! AGAGTTGGTGTGTGATAAAT+CGG + chr1_1:57155457-57155476 Msa0030730:intron 35.0%
!!! ATGTCTCGTAACTTTTTTGC+AGG + chr1_1:57155679-57155698 Msa0030730:intron 35.0%
ATACTAACACCTAGGTTTGT+CGG + chr1_1:57155930-57155949 Msa0030730:three_prime_UTR 35.0%
TTAATGGTCTCAGAATCAGA+AGG - chr1_1:57156034-57156053 None:intergenic 35.0%
CGGCATAGCATTTGAATTTG+AGG - chr1_1:57151397-57151416 None:intergenic 40.0%
!! ATTCTGAGGTAAAAGTAGGC+CGG + chr1_1:57151878-57151897 Msa0030730:intron 40.0%
TGATATGATCTCATGTGTGG+AGG + chr1_1:57152108-57152127 Msa0030730:intron 40.0%
AGAGAGTTGGAATATGCTGA+AGG + chr1_1:57152153-57152172 Msa0030730:CDS 40.0%
! AAGGAGCAGTTGGAGATTTT+GGG + chr1_1:57152172-57152191 Msa0030730:CDS 40.0%
TTTGGGAAGGATAATAGAGC+TGG + chr1_1:57152189-57152208 Msa0030730:CDS 40.0%
TCAGCAATAAGGAGTAGGAA+TGG + chr1_1:57152237-57152256 Msa0030730:CDS 40.0%
! GTGTGTGTTAAAGACTTGGT+CGG + chr1_1:57152539-57152558 Msa0030730:intron 40.0%
ACAATTAACAGCGCCAAACA+TGG - chr1_1:57152567-57152586 None:intergenic 40.0%
ATCACGCTATGTTGCATTGA+TGG - chr1_1:57153302-57153321 None:intergenic 40.0%
! CTTCTGACATTTTCTTGCTC+TGG - chr1_1:57154054-57154073 None:intergenic 40.0%
GTCAGAAGACTATTCTTGAG+AGG + chr1_1:57154066-57154085 Msa0030730:CDS 40.0%
AGATGAGAGATAGACACTAC+TGG + chr1_1:57154120-57154139 Msa0030730:CDS 40.0%
GATGAGAGATAGACACTACT+GGG + chr1_1:57154121-57154140 Msa0030730:CDS 40.0%
AAGAGACCGTGGTGAATAAT+TGG + chr1_1:57154270-57154289 Msa0030730:intron 40.0%
CTTCTGGTAATAGCTAGTGA+AGG + chr1_1:57154332-57154351 Msa0030730:intron 40.0%
! TTTACATCCTTTTACTGGCC+CGG - chr1_1:57154590-57154609 None:intergenic 40.0%
TGGTCCTGAACTAAAAAGTG+AGG + chr1_1:57154727-57154746 Msa0030730:intron 40.0%
GGTCCTGAACTAAAAAGTGA+GGG + chr1_1:57154728-57154747 Msa0030730:intron 40.0%
!!! GTACCCTCACTTTTTAGTTC+AGG - chr1_1:57154734-57154753 None:intergenic 40.0%
AGCGTAGATATATTGCTTCG+AGG + chr1_1:57154845-57154864 Msa0030730:CDS 40.0%
AAGAATTACCTCAACCTGTG+GGG - chr1_1:57154876-57154895 None:intergenic 40.0%
GAAGAATTACCTCAACCTGT+GGG - chr1_1:57154877-57154896 None:intergenic 40.0%
TGAAGAATTACCTCAACCTG+TGG - chr1_1:57154878-57154897 None:intergenic 40.0%
!! GGGGTTCTAGGAAATATAGA+TGG - chr1_1:57155238-57155257 None:intergenic 40.0%
! CATTGCAAATTTGGGGTTCT+AGG - chr1_1:57155250-57155269 None:intergenic 40.0%
! TATGCTCCAAGGTTTAGAGT+TGG + chr1_1:57155442-57155461 Msa0030730:intron 40.0%
CCTAGGTGTTAGTATGGTAA+TGG - chr1_1:57155925-57155944 None:intergenic 40.0%
CCATTACCATACTAACACCT+AGG + chr1_1:57155922-57155941 Msa0030730:three_prime_UTR 40.0%
GACAAACCTAGGTGTTAGTA+TGG - chr1_1:57155931-57155950 None:intergenic 40.0%
TACTAACACCTAGGTTTGTC+GGG + chr1_1:57155931-57155950 Msa0030730:three_prime_UTR 40.0%
AAAAAGGGGAACTGGGGATA+AGG + chr1_1:57151266-57151285 Msa0030730:five_prime_UTR 45.0%
AAAAGGGGAACTGGGGATAA+GGG + chr1_1:57151267-57151286 Msa0030730:five_prime_UTR 45.0%
CTGCAAATGCAATGGCATGT+TGG + chr1_1:57151309-57151328 Msa0030730:CDS 45.0%
GGCATGTTGGTCATGTTTGA+TGG + chr1_1:57151322-57151341 Msa0030730:CDS 45.0%
CATTTGAATTTGAGGGTCGG+TGG - chr1_1:57151389-57151408 None:intergenic 45.0%
GTAGTACCTGTAAGAGAGCA+TGG - chr1_1:57151478-57151497 None:intergenic 45.0%
GACCTACCTCCAAAAGTTGA+GGG - chr1_1:57151608-57151627 None:intergenic 45.0%
GATACCACGCTTCAGGAAAA+CGG - chr1_1:57151828-57151847 None:intergenic 45.0%
TTTCCTGAAGCGTGGTATCT+AGG + chr1_1:57151829-57151848 Msa0030730:intron 45.0%
CTAGGTAACAGTGAGAGAGT+TGG + chr1_1:57152140-57152159 Msa0030730:intron 45.0%
GAATATGCTGAAGGAGCAGT+TGG + chr1_1:57152162-57152181 Msa0030730:CDS 45.0%
! GAAGGAGCAGTTGGAGATTT+TGG + chr1_1:57152171-57152190 Msa0030730:CDS 45.0%
!! AGCAGTTGGAGATTTTGGGA+AGG + chr1_1:57152176-57152195 Msa0030730:CDS 45.0%
GCAATAAGGAGTAGGAATGG+TGG + chr1_1:57152240-57152259 Msa0030730:CDS 45.0%
AGTAGGAATGGTGGCATTGT+TGG + chr1_1:57152249-57152268 Msa0030730:CDS 45.0%
!! GCATTGTTGGTTTGACGTGT+CGG + chr1_1:57152262-57152281 Msa0030730:CDS 45.0%
! TTGGTTTGACGTGTCGGATT+GGG + chr1_1:57152268-57152287 Msa0030730:CDS 45.0%
TGTCACTGGCCATATTGACA+TGG + chr1_1:57152296-57152315 Msa0030730:CDS 45.0%
AATTTGGATTCTTCCAGGCC+TGG + chr1_1:57153023-57153042 Msa0030730:intron 45.0%
ATTTGGATTCTTCCAGGCCT+GGG + chr1_1:57153024-57153043 Msa0030730:intron 45.0%
ATTCCTCATGCAGCAATAGG+TGG + chr1_1:57153251-57153270 Msa0030730:CDS 45.0%
! GCTATGTTGCATTGATGGCT+CGG - chr1_1:57153297-57153316 None:intergenic 45.0%
GCAACATAGCGTGATGATTG+AGG + chr1_1:57153307-57153326 Msa0030730:CDS 45.0%
! AGCGAGGCATCATGCTTATA+GGG + chr1_1:57153414-57153433 Msa0030730:CDS 45.0%
ATGCTTATAGGGACTGCTCA+TGG + chr1_1:57153425-57153444 Msa0030730:CDS 45.0%
TCTAAAGGCCTGCTTATACC+AGG + chr1_1:57153701-57153720 Msa0030730:intron 45.0%
CTAAAGGCCTGCTTATACCA+GGG + chr1_1:57153702-57153721 Msa0030730:intron 45.0%
CTTTAGACCCTGGTATAAGC+AGG - chr1_1:57153712-57153731 None:intergenic 45.0%
CTGCTTATACCAGGGTCTAA+AGG + chr1_1:57153710-57153729 Msa0030730:intron 45.0%
TAACTCTAGTCAGAGGATGC+TGG + chr1_1:57153784-57153803 Msa0030730:intron 45.0%
ACACTACTGGGTTACACATC+AGG + chr1_1:57154133-57154152 Msa0030730:CDS 45.0%
! TACATTTGGTGAAGGGCTTC+TGG + chr1_1:57154316-57154335 Msa0030730:intron 45.0%
ATCTATACCGGGCCAGTAAA+AGG + chr1_1:57154580-57154599 Msa0030730:intron 45.0%
!! CATTGGCTCAAAGCTCAATG+TGG + chr1_1:57154615-57154634 Msa0030730:intron 45.0%
AGGAAAAGACCAACCATGCT+AGG - chr1_1:57155143-57155162 None:intergenic 45.0%
!!! CATGGTTGGTCTTTTCCTCA+TGG + chr1_1:57155145-57155164 Msa0030730:intron 45.0%
GACGGGAAGAATGAGAATTC+GGG - chr1_1:57155177-57155196 None:intergenic 45.0%
GGACGGGAAGAATGAGAATT+CGG - chr1_1:57155178-57155197 None:intergenic 45.0%
TCATTCTTCCCGTCCAAACT+AGG + chr1_1:57155183-57155202 Msa0030730:intron 45.0%
CACACACCAACTCTAAACCT+TGG - chr1_1:57155451-57155470 None:intergenic 45.0%
GTGTGTGATAAATCGGCGTA+TGG + chr1_1:57155464-57155483 Msa0030730:intron 45.0%
!!! CTTTCTAGGGCCTCTTTTCT+GGG - chr1_1:57155570-57155589 None:intergenic 45.0%
!!! ACTTTCTAGGGCCTCTTTTC+TGG - chr1_1:57155571-57155590 None:intergenic 45.0%
TTGTTTGTCCCGACAAACCT+AGG - chr1_1:57155942-57155961 None:intergenic 45.0%
GAGAGATAATGCACACACAG+AGG - chr1_1:57156009-57156028 None:intergenic 45.0%
ACCCGTGAAAAAAGGGGAAC+TGG + chr1_1:57151258-57151277 Msa0030730:five_prime_UTR 50.0%
!!! CCCAGTTCCCCTTTTTTCAC+GGG - chr1_1:57151262-57151281 None:intergenic 50.0%
CCCGTGAAAAAAGGGGAACT+GGG + chr1_1:57151259-57151278 Msa0030730:five_prime_UTR 50.0%
!!! CCCCAGTTCCCCTTTTTTCA+CGG - chr1_1:57151263-57151282 None:intergenic 50.0%
CCGTGAAAAAAGGGGAACTG+GGG + chr1_1:57151260-57151279 Msa0030730:five_prime_UTR 50.0%
CAGCAACAACAGCAGCATCA+TGG + chr1_1:57151351-57151370 Msa0030730:CDS 50.0%
GAACACTGTGACTGTGACTG+TGG - chr1_1:57151434-57151453 None:intergenic 50.0%
! GTACCTGTAAGAGAGCATGG+AGG - chr1_1:57151475-57151494 None:intergenic 50.0%
AAAGTTGAGGGCGGTTAGGT+TGG - chr1_1:57151596-57151615 None:intergenic 50.0%
! ACCTAACCGCCCTCAACTTT+TGG + chr1_1:57151596-57151615 Msa0030730:intron 50.0%
TCCAAAAGTTGAGGGCGGTT+AGG - chr1_1:57151600-57151619 None:intergenic 50.0%
! TAACCGCCCTCAACTTTTGG+AGG + chr1_1:57151599-57151618 Msa0030730:intron 50.0%
CTACCTCCAAAAGTTGAGGG+CGG - chr1_1:57151605-57151624 None:intergenic 50.0%
GGACCTACCTCCAAAAGTTG+AGG - chr1_1:57151609-57151628 None:intergenic 50.0%
TTGCCTAGATACCACGCTTC+AGG - chr1_1:57151835-57151854 None:intergenic 50.0%
GCGTGGTATCTAGGCAAACA+CGG + chr1_1:57151838-57151857 Msa0030730:intron 50.0%
GTGTGGAGGAATGTGTAGCT+AGG + chr1_1:57152122-57152141 Msa0030730:intron 50.0%
!! GTTGGTTTGACGTGTCGGAT+TGG + chr1_1:57152267-57152286 Msa0030730:CDS 50.0%
! TTTGACGTGTCGGATTGGGA+GGG + chr1_1:57152272-57152291 Msa0030730:CDS 50.0%
! GACTTGGTCGGTTCCATGTT+TGG + chr1_1:57152551-57152570 Msa0030730:intron 50.0%
TTTGGATTCTTCCAGGCCTG+GGG + chr1_1:57153025-57153044 Msa0030730:intron 50.0%
AAGCTGAAGCTCATGCATGC+CGG + chr1_1:57153381-57153400 Msa0030730:CDS 50.0%
! GAGCGAGGCATCATGCTTAT+AGG + chr1_1:57153413-57153432 Msa0030730:CDS 50.0%
TCGTAAAGGCCTTTAGACCC+TGG - chr1_1:57153722-57153741 None:intergenic 50.0%
GAATTCGGGCAAAAGCCATG+AGG - chr1_1:57155163-57155182 None:intergenic 50.0%
TGTGACTGTGACTGTGGCTG+TGG - chr1_1:57151428-57151447 None:intergenic 55.0%
CGACCTCCATGCTCTCTTAC+AGG + chr1_1:57151469-57151488 Msa0030730:CDS 55.0%
!! CGCCCTCAACTTTTGGAGGT+AGG + chr1_1:57151603-57151622 Msa0030730:intron 55.0%
! GTTTGACGTGTCGGATTGGG+AGG + chr1_1:57152271-57152290 Msa0030730:CDS 55.0%
! ACAGTAGTCTTGCCAACCCC+AGG - chr1_1:57153044-57153063 None:intergenic 55.0%
GCACCACCTATTGCTGCATG+AGG - chr1_1:57153257-57153276 None:intergenic 55.0%
AGGTGGTGCACGTAGAATGC+AGG + chr1_1:57153268-57153287 Msa0030730:CDS 55.0%
GAATCCTACGCTCTCTGACC+TGG + chr1_1:57153472-57153491 Msa0030730:CDS 55.0%
AGGGGAACTGGGGATAAGGG+TGG + chr1_1:57151270-57151289 Msa0030730:five_prime_UTR 60.0%
GGGGAACTGGGGATAAGGGT+GGG + chr1_1:57151271-57151290 Msa0030730:five_prime_UTR 60.0%
!! TGGGCCGTTTTCCTGAAGCG+TGG + chr1_1:57151821-57151840 Msa0030730:intron 60.0%
GATTCTTCCAGGCCTGGGGT+TGG + chr1_1:57153029-57153048 Msa0030730:intron 60.0%
TGCCTCGCTCAGCAATCGAC+CGG - chr1_1:57153403-57153422 None:intergenic 60.0%
! CGAACCAGGTCAGAGAGCGT+AGG - chr1_1:57153479-57153498 None:intergenic 60.0%
AGGCAAGACCCCACAGGTTG+AGG + chr1_1:57154865-57154884 Msa0030730:CDS 60.0%
CTGTGGCTGTGGCTGAGTCG+CGG - chr1_1:57151417-57151436 None:intergenic 65.0%
! CGGATTGGGAGGGCTGTCAC+TGG + chr1_1:57152282-57152301 Msa0030730:CDS 65.0%
AGTCTTGCCAACCCCAGGCC+TGG - chr1_1:57153039-57153058 None:intergenic 65.0%
TGCCGGTCGATTGCTGAGCG+AGG + chr1_1:57153398-57153417 Msa0030730:CDS 65.0%
GCTTCGAGGCAAGACCCCAC+AGG + chr1_1:57154859-57154878 Msa0030730:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 57151217 57156088 57151217 ID=Msa0030730;Name=Msa0030730
chr1_1 mRNA 57151217 57156088 57151217 ID=Msa0030730-mRNA-1;Parent=Msa0030730;Name=Msa0030730-mRNA-1;_AED=0.13;_eAED=0.13;_QI=85|0.85|1|1|0.85|0.75|8|289|344
chr1_1 exon 57151217 57151490 57151217 ID=Msa0030730-mRNA-1:exon:17204;Parent=Msa0030730-mRNA-1
chr1_1 exon 57152144 57152364 57152144 ID=Msa0030730-mRNA-1:exon:17205;Parent=Msa0030730-mRNA-1
chr1_1 exon 57153040 57153112 57153040 ID=Msa0030730-mRNA-1:exon:17206;Parent=Msa0030730-mRNA-1
chr1_1 exon 57153209 57153493 57153209 ID=Msa0030730-mRNA-1:exon:17207;Parent=Msa0030730-mRNA-1
chr1_1 exon 57154011 57154154 57154011 ID=Msa0030730-mRNA-1:exon:17208;Parent=Msa0030730-mRNA-1
chr1_1 exon 57154836 57154886 57154836 ID=Msa0030730-mRNA-1:exon:17209;Parent=Msa0030730-mRNA-1
chr1_1 exon 57155701 57155957 57155701 ID=Msa0030730-mRNA-1:exon:17210;Parent=Msa0030730-mRNA-1
chr1_1 exon 57155985 57156088 57155985 ID=Msa0030730-mRNA-1:exon:17211;Parent=Msa0030730-mRNA-1
chr1_1 five_prime_UTR 57151217 57151301 57151217 ID=Msa0030730-mRNA-1:five_prime_utr;Parent=Msa0030730-mRNA-1
chr1_1 CDS 57151302 57151490 57151302 ID=Msa0030730-mRNA-1:cds;Parent=Msa0030730-mRNA-1
chr1_1 CDS 57152144 57152364 57152144 ID=Msa0030730-mRNA-1:cds;Parent=Msa0030730-mRNA-1
chr1_1 CDS 57153040 57153112 57153040 ID=Msa0030730-mRNA-1:cds;Parent=Msa0030730-mRNA-1
chr1_1 CDS 57153209 57153493 57153209 ID=Msa0030730-mRNA-1:cds;Parent=Msa0030730-mRNA-1
chr1_1 CDS 57154011 57154154 57154011 ID=Msa0030730-mRNA-1:cds;Parent=Msa0030730-mRNA-1
chr1_1 CDS 57154836 57154886 57154836 ID=Msa0030730-mRNA-1:cds;Parent=Msa0030730-mRNA-1
chr1_1 CDS 57155701 57155772 57155701 ID=Msa0030730-mRNA-1:cds;Parent=Msa0030730-mRNA-1
chr1_1 three_prime_UTR 57155773 57155957 57155773 ID=Msa0030730-mRNA-1:three_prime_utr;Parent=Msa0030730-mRNA-1
chr1_1 three_prime_UTR 57155985 57156088 57155985 ID=Msa0030730-mRNA-1:three_prime_utr;Parent=Msa0030730-mRNA-1
Gene Sequence

>Msa0030730

ATGATAGCTGCAAATGCAATGGCATGTTGGTCATGTTTGATGGCAGCAACAGCAACAACAGCAGCATCATGGAAATTGAAGTCACCACCGACCCTCAAATTCAAATGCTATGCCGCGACTCAGCCACAGCCACAGTCACAGTCACAGTGTTCTCTTGTGCACAACGACGACCTCCATGCTCTCTTACAGGTAACAGTGAGAGAGTTGGAATATGCTGAAGGAGCAGTTGGAGATTTTGGGAAGGATAATAGAGCTGGTATTGAAGGTACTTTGCACAGAATATCAGCAATAAGGAGTAGGAATGGTGGCATTGTTGGTTTGACGTGTCGGATTGGGAGGGCTGTCACTGGCCATATTGACATGGTTTATGATCTGCTTCAATATGGCAAGAGCATTTTATTTCTTGGAAGGCCTGGGGTTGGCAAGACTACTGTTATGAGAGAGATTGCTCGTGTTCTGTCAGATGAATTTCACAAAAGAGTGGTGATTGTTGATACCAGTAATGAAATTGGAGGTGATGGCAATATTCCTCATGCAGCAATAGGTGGTGCACGTAGAATGCAGGTATCCGAGCCATCAATGCAACATAGCGTGATGATTGAGGCAGTAGAAAATCATATGCCTGAGGTGATTATAGTAGATGAGATTGGCACAGAAGCTGAAGCTCATGCATGCCGGTCGATTGCTGAGCGAGGCATCATGCTTATAGGGACTGCTCATGGACAGCAAATTGAGAATGTCATGAAGAATCCTACGCTCTCTGACCTGATTGGTGGAATTGAAAGTGTTACTCTGGGAGACTACGAAGCCAGAGCAAGAAAATGTCAGAAGACTATTCTTGAGAGGAAAGCTCCTCCAACATTTGATTTCTTGATTGAGATGAGAGATAGACACTACTGGGTTACACATCAGACCGACAAAAGCGTAGATATATTGCTTCGAGGCAAGACCCCACAGGTTGAGGTAAGAAAAAGAGATGAGAAATGCAAGGTTGTGATCGAAAAATCTAAAGCATATGATAAGTGTCAAATTTGA

Protein sequence

>Msa0030730

MIAANAMACWSCLMAATATTAASWKLKSPPTLKFKCYAATQPQPQSQSQCSLVHNDDLHALLQVTVRELEYAEGAVGDFGKDNRAGIEGTLHRISAIRSRNGGIVGLTCRIGRAVTGHIDMVYDLLQYGKSILFLGRPGVGKTTVMREIARVLSDEFHKRVVIVDTSNEIGGDGNIPHAAIGGARRMQVSEPSMQHSVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGIMLIGTAHGQQIENVMKNPTLSDLIGGIESVTLGDYEARARKCQKTILERKAPPTFDFLIEMRDRHYWVTHQTDKSVDILLRGKTPQVEVRKRDEKCKVVIEKSKAYDKCQI*