AlfalfaGEDB | Msa1159990

M. sativa cultivar zhongmu-4 / Msa1159990

KEGG: -
GO: GO:0003674 GO:0003824 GO:0003924 GO:0006275 GO:0008150 GO:0008156 GO:0009889 GO:0009890 GO:0009892 GO:0010556 GO:0010558 GO:0010605 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019219 GO:0019222 GO:0022613 GO:0030174 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032297 GO:0042254 GO:0044085 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0090329 GO:2000104 GO:2000112 GO:2000113
PFAM: PF01926.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1159990	ABD33306.1	84.765	617	34	5	1	558	1	616	0.0	1035

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1159990	sp\|Q8W4I6\|BPG2_ARATH	59.823	453	139	9	24	441	30	474	3.22e-161	477
Msa1159990	sp\|Q8W4I6\|BPG2_ARATH	63.889	108	37	1	439	544	543	650	1.23e-41	162

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1159990	Q2HRG7	84.765	617	34	5	1	558	1	616	0.0	1035

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000780	Msa1159990	0.804627	1.972425e-49	-8.615850e-47
Msa0001950	Msa1159990	0.812481	4.149237e-51	-8.615850e-47
Msa0003470	Msa1159990	0.837006	6.703997e-57	-8.615850e-47
Msa0004350	Msa1159990	0.806674	7.335455e-50	-8.615850e-47
Msa0008830	Msa1159990	0.820017	8.565202e-53	-8.615850e-47
Msa0008850	Msa1159990	0.815813	7.627437e-52	-8.615850e-47
Msa0017120	Msa1159990	0.834519	2.860412e-56	-8.615850e-47
Msa0017940	Msa1159990	0.813610	2.346592e-51	-8.615850e-47
Msa0018220	Msa1159990	0.837567	4.818168e-57	-8.615850e-47
Msa0020630	Msa1159990	0.812366	4.395682e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1159990	MtrunA17_Chr7g0256861	95.721	444	15	2	1	441	1	443	0.0	866
Msa1159990	MtrunA17_Chr7g0256861	94.167	120	7	0	439	558	512	631	9.75e-72	241
Msa1159990	MtrunA17_Chr4g0038081	52.416	269	114	3	182	438	127	393	1.56e-87	282
Msa1159990	MtrunA17_Chr4g0038081	40.000	110	66	0	435	544	461	570	4.15e-22	100
Msa1159990	MtrunA17_Chr4g0020791	32.418	182	96	7	251	423	172	335	1.66e-13	73.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1159990	AT4G10620.1	52.049	244	113	2	197	438	151	392	5.39e-76	252
Msa1159990	AT4G10620.1	38.983	118	69	1	439	553	464	581	2.54e-22	101

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Find 150 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTGAGAAGAAGAGAA+TGG	0.524889	7_4:+49734784	Msa1159990:CDS
AAAAGTATCTGGATCTAGTT+GGG	0.464693	7_4:+49738274	Msa1159990:CDS
AAAGCTCTATCTGAAGCTAT+TGG	0.457900	7_4:+49738467	Msa1159990:CDS
AAATAAACTGCGCTTAACTT+AGG	0.557086	7_4:-49735205	None:intergenic
AAATATGGATGCAAGAGCCC+TGG	0.544879	7_4:-49735475	None:intergenic
AAATGATGATAAGGTTGATT+TGG	0.346656	7_4:+49734682	Msa1159990:CDS
AAATGATGATGAGACTGAGT+GGG	0.704615	7_4:+49734622	Msa1159990:CDS
AACCTATCAAAATCAAAATC+CGG	0.470968	7_4:-49734911	None:intergenic
AACTAGGTACATGGAAAGAA+AGG	0.424476	7_4:+49738246	Msa1159990:CDS
AACTGGAGCTTCCGTGAGCT+TGG	0.471763	7_4:-49735383	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGGTGAAGTAGAAGATAAA+GGG	+	chr7_4:49734597-49734616	Msa1159990:CDS	30.0%
TGGTGAAGAAAATGATGATA+AGG	+	chr7_4:49734673-49734692	Msa1159990:CDS	30.0%
TGTCATTCCTTGAGAAATTA+TGG	+	chr7_4:49734854-49734873	Msa1159990:CDS	30.0%
GTCATTCCTTGAGAAATTAT+GGG	+	chr7_4:49734855-49734874	Msa1159990:CDS	30.0%
AGCTGTGAAATCATTGTTTA+AGG	+	chr7_4:49735033-49735052	Msa1159990:CDS	30.0%
AAATAAACTGCGCTTAACTT+AGG	-	chr7_4:49735208-49735227	None:intergenic	30.0%
TAAGTTAAGCGCAGTTTATT+TGG	+	chr7_4:49735207-49735226	Msa1159990:CDS	30.0%
TATTGTCGATGAGATTGAAT+CGG	+	chr7_4:49735497-49735516	Msa1159990:CDS	30.0%
AACAAAAGATGGTTGAGATA+CGG	+	chr7_4:49735524-49735543	Msa1159990:intron	30.0%
ACCTCGTTCATATAGAATTA+AGG	+	chr7_4:49735558-49735577	Msa1159990:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	49734221	49738580	49734221	ID=Msa1159990;Name=Msa1159990
chr7_4	mRNA	49734221	49738580	49734221	ID=Msa1159990-mRNA-1;Parent=Msa1159990;Name=Msa1159990-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0\|0\|0\|1\|1\|1\|2\|0\|558
chr7_4	exon	49734221	49735534	49734221	ID=Msa1159990-mRNA-1:exon:13758;Parent=Msa1159990-mRNA-1
chr7_4	exon	49738218	49738580	49738218	ID=Msa1159990-mRNA-1:exon:13759;Parent=Msa1159990-mRNA-1
chr7_4	CDS	49734221	49735534	49734221	ID=Msa1159990-mRNA-1:cds;Parent=Msa1159990-mRNA-1
chr7_4	CDS	49738218	49738580	49738218	ID=Msa1159990-mRNA-1:cds;Parent=Msa1159990-mRNA-1

Gene Sequence

>Msa1159990

ATGGCTATCTTGTTCTCTACAATTGCACTTCCCTCCACAAACCTCACTTCCATCTTCAACAACACTTCACATTCTCACGCACTTCGCCATTTCTCAGGTAATTCTGTCACTAAACGCTTTCATAAAGCTTCTTCCTTTATTGCTTTTGCTGTGAAGAATAACCCCGCCATAAGAAAAACCACTCCAAGAAGAGATAGTAGAAACCCACTTTTGAGTGAAGGAAGAGATGAAGATGAAGCTCTTGGACCCATTTGCCCTGGTTGTGGAATTTTCATGCAAGATAATGATCCGAATCTTCCTGGTTTTTACCAACAAAAAGAGGTCAAAATTGAAGCTTTTTCAGAAGAAGATTATGAATTAGATGATGAAGAGGATGATGGTGAAGTAGAAGATAAAGGGTCAAATGATGATGAGACTGAGTGGGATTCTGATGAGTTGGAAGCTATGTTACTTGGTGAAGAAAATGATGATAAGGTTGATTTGGATGGGTTTACACATGCAGGTGTTGGGTATGGTAATGTTACTGAGGAGGTTTTAGAGAGGGCTAAGAAGAAGAAGGTTTCAAAAGCTGAGAAGAAGAGAATGGTTAGGGAAGCTGAGAAGGTGAAAGAAGAGGTTACTGTTTGTGCTAGGTGTCATTCCTTGAGAAATTATGGGCAAGTGAAGAATTATATGGCGGAGAATTTGATACCGGATTTTGATTTTGATAGGTTGATTTCGACTAGGTTGATGAATCCTGCTGGTAGTGGTAGTTCTACTGTTGTTGTTATGGTTGTGGATTGTGTTGATTTTGATGGTTCTTTCCCGAGAACAGCTGTGAAATCATTGTTTAAGGCGTTGGAAGGTATGCAGGAGAATACGAAGAAGGGTAAGAAACTGCCAAAGCTTGTGCTTGTAGCTACTAAGGTCGATCTCCTACCATCACAAGTTTCTCCAACGAGATTGGATAGATGGGTTCGACACCGTGCAAGTGCGGGAGGAGCGCCTAAGTTAAGCGCAGTTTATTTGGTCAGTTCTCGAAAGGATTTAGGTGTGAGGAATGTGTTGTCGTTTGTAAAGGATTTGGCTGGTCCTCGTGGGAATGTTTGGGTTATTGGGGCTCAAAATGCTGGGAAGTCTACTCTGATCAATGCATTTGCGAAGAAAGAAGGAGCCAAAGTTACCAAGCTCACGGAAGCTCCAGTTCCTGGGACGACACTTGGGATCTTGAGGATTGCAGGAATTTTGTCAGCCAAGGCTAAGATGTTTGATACTCCAGGGCTCTTGCATCCATATTTATTGTCGATGAGATTGAATCGGGAGGAACAAAAGATGCCTCCCATTGGTAATGACCGTGCAGCTGAACTAGGTACATGGAAAGAAAGGGAAGTAAAAGTATCTGGATCTAGTTGGGATGTCAACTGCATGGATATATCAATAGCTGGCTTAGGTTGGTTTTCTTTGGGTATCCAAGGTGAAGCAACCATGAAATTATGGACCTATGATGGAATTGAAATAACTTTGAGAGAACCCTTGGTACTTGACCGGGCCCCATCCCTTGAAAAACCAGGTTTTTGGTTACCAAAAGCTCTATCTGAAGCTATTGGCAACCAAACTAAACTTGAAGCTCAAAGAAGGAAAAAACTTGAAGATGAAGATACAGAATACGTGGGGGCAAGGACAGAGATCTCTGCATGA

Protein sequence

>Msa1159990

MAILFSTIALPSTNLTSIFNNTSHSHALRHFSGNSVTKRFHKASSFIAFAVKNNPAIRKTTPRRDSRNPLLSEGRDEDEALGPICPGCGIFMQDNDPNLPGFYQQKEVKIEAFSEEDYELDDEEDDGEVEDKGSNDDETEWDSDELEAMLLGEENDDKVDLDGFTHAGVGYGNVTEEVLERAKKKKVSKAEKKRMVREAEKVKEEVTVCARCHSLRNYGQVKNYMAENLIPDFDFDRLISTRLMNPAGSGSSTVVVMVVDCVDFDGSFPRTAVKSLFKALEGMQENTKKGKKLPKLVLVATKVDLLPSQVSPTRLDRWVRHRASAGGAPKLSAVYLVSSRKDLGVRNVLSFVKDLAGPRGNVWVIGAQNAGKSTLINAFAKKEGAKVTKLTEAPVPGTTLGILRIAGILSAKAKMFDTPGLLHPYLLSMRLNREEQKMPPIGNDRAAELGTWKEREVKVSGSSWDVNCMDISIAGLGWFSLGIQGEATMKLWTYDGIEITLREPLVLDRAPSLEKPGFWLPKALSEAIGNQTKLEAQRRKKLEDEDTEYVGARTEISA*