AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1159990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1159990 MtrunA17_Chr7g0256861 95.721 444 15 2 1 441 1 443 0.0 866
Msa1159990 MtrunA17_Chr7g0256861 94.167 120 7 0 439 558 512 631 9.75e-72 241
Msa1159990 MtrunA17_Chr4g0038081 52.416 269 114 3 182 438 127 393 1.56e-87 282
Msa1159990 MtrunA17_Chr4g0038081 40.000 110 66 0 435 544 461 570 4.15e-22 100
Msa1159990 MtrunA17_Chr4g0020791 32.418 182 96 7 251 423 172 335 1.66e-13 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1159990 AT4G10620.1 52.049 244 113 2 197 438 151 392 5.39e-76 252
Msa1159990 AT4G10620.1 38.983 118 69 1 439 553 464 581 2.54e-22 101

Find 150 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTGGGAATGTTTGGGTTAT+TGG 0.085783 7_4:+49735295 Msa1159990:CDS
TGTCATTCCTTGAGAAATTA+TGG 0.183490 7_4:+49734854 Msa1159990:CDS
GTGGGAATGTTTGGGTTATT+GGG 0.188366 7_4:+49735296 Msa1159990:CDS
AGCTGTGAAATCATTGTTTA+AGG 0.200160 7_4:+49735033 Msa1159990:CDS
TAAGTTAAGCGCAGTTTATT+TGG 0.224687 7_4:+49735207 Msa1159990:CDS
CTGGTCCTCGTGGGAATGTT+TGG 0.246265 7_4:+49735287 Msa1159990:CDS
ATAGCTTCAGATAGAGCTTT+TGG 0.295364 7_4:-49738464 None:intergenic
GTCAGTTCTCGAAAGGATTT+AGG 0.297754 7_4:+49735229 Msa1159990:CDS
AATCTCATCGACAATAAATA+TGG 0.300320 7_4:-49735490 None:intergenic
TAGTTCTACTGTTGTTGTTA+TGG 0.301404 7_4:+49734970 Msa1159990:CDS
CTCCAACGAGATTGGATAGA+TGG 0.307606 7_4:+49735152 Msa1159990:CDS
GTGAAGCAACCATGAAATTA+TGG 0.320747 7_4:+49738357 Msa1159990:CDS
TTTGAGCTTCAAGTTTAGTT+TGG 0.323380 7_4:-49738493 None:intergenic
CTCACGGAAGCTCCAGTTCC+TGG 0.329038 7_4:+49735388 Msa1159990:CDS
CTTGGGATCTTGAGGATTGC+AGG 0.331131 7_4:+49735418 Msa1159990:CDS
CTTCACAGCAAAAGCAATAA+AGG 0.338049 7_4:-49734354 None:intergenic
GAAAGGGAAGTAAAAGTATC+TGG 0.338585 7_4:+49738263 Msa1159990:CDS
GATGGTGAAGTAGAAGATAA+AGG 0.342489 7_4:+49734596 Msa1159990:CDS
AAATGATGATAAGGTTGATT+TGG 0.346656 7_4:+49734682 Msa1159990:CDS
GGGTTTCTACTATCTCTTCT+TGG 0.353415 7_4:-49734404 None:intergenic
ATCATAGGTCCATAATTTCA+TGG 0.354795 7_4:-49738366 None:intergenic
GTTATTGGGGCTCAAAATGC+TGG 0.360192 7_4:+49735310 Msa1159990:CDS
CCAAGTGTCGTCCCAGGAAC+TGG 0.369142 7_4:-49735400 None:intergenic
TACTGTTGTTGTTATGGTTG+TGG 0.373980 7_4:+49734976 Msa1159990:CDS
GATAATGATCCGAATCTTCC+TGG 0.375609 7_4:+49734500 Msa1159990:CDS
ACAAGTTTCTCCAACGAGAT+TGG 0.379460 7_4:+49735144 Msa1159990:CDS
AGTTATTTCAATTCCATCAT+AGG 0.386223 7_4:-49738381 None:intergenic
CTGAGAAGAAGAGAATGGTT+AGG 0.387392 7_4:+49734789 Msa1159990:CDS
AATTCCACAACCAGGGCAAA+TGG 0.391823 7_4:-49734468 None:intergenic
CACGCACTTCGCCATTTCTC+AGG 0.407474 7_4:+49734296 Msa1159990:CDS
TGGTCCTCGTGGGAATGTTT+GGG 0.416086 7_4:+49735288 Msa1159990:CDS
GTCATTCCTTGAGAAATTAT+GGG 0.419791 7_4:+49734855 Msa1159990:CDS
AGAGAGGGCTAAGAAGAAGA+AGG 0.420566 7_4:+49734757 Msa1159990:CDS
AACTAGGTACATGGAAAGAA+AGG 0.424476 7_4:+49738246 Msa1159990:CDS
AATGATTTCACAGCTGTTCT+CGG 0.425181 7_4:-49735025 None:intergenic
CCAGTTCCTGGGACGACACT+TGG 0.433779 7_4:+49735400 Msa1159990:CDS
TTCCGTGAGCTTGGTAACTT+TGG 0.435723 7_4:-49735374 None:intergenic
GTAGCTACAAGCACAAGCTT+TGG 0.435994 7_4:-49735100 None:intergenic
AATGGTTAGGGAAGCTGAGA+AGG 0.441930 7_4:+49734802 Msa1159990:CDS
TGAGAAGAAGAGAATGGTTA+GGG 0.445878 7_4:+49734790 Msa1159990:CDS
GTTGTCGTTTGTAAAGGATT+TGG 0.447908 7_4:+49735264 Msa1159990:CDS
TATTGTCGATGAGATTGAAT+CGG 0.450103 7_4:+49735497 Msa1159990:CDS
AGAGATGAAGATGAAGCTCT+TGG 0.450850 7_4:+49734443 Msa1159990:CDS
GGACCCATTTGCCCTGGTTG+TGG 0.452590 7_4:+49734464 Msa1159990:CDS
CTCTTCCTTCACTCAAAAGT+GGG 0.453940 7_4:-49734424 None:intergenic
AAAGCTCTATCTGAAGCTAT+TGG 0.457900 7_4:+49738467 Msa1159990:CDS
TGGGCAAGTGAAGAATTATA+TGG 0.458506 7_4:+49734874 Msa1159990:CDS
TAAAAGTATCTGGATCTAGT+TGG 0.461923 7_4:+49738273 Msa1159990:CDS
ATGAAATTATGGACCTATGA+TGG 0.464155 7_4:+49738368 Msa1159990:CDS
AAAAGTATCTGGATCTAGTT+GGG 0.464693 7_4:+49738274 Msa1159990:CDS
TTCTTATTCCAGCCTCCCAT+TGG 0.467617 7_4:+49738206 Msa1159990:intron
ATTGTCGATGAGATTGAATC+GGG 0.468310 7_4:+49735498 Msa1159990:CDS
ATGGTGAAGTAGAAGATAAA+GGG 0.469415 7_4:+49734597 Msa1159990:CDS
AACCTATCAAAATCAAAATC+CGG 0.470968 7_4:-49734911 None:intergenic
GCTCTTGGACCCATTTGCCC+TGG 0.471707 7_4:+49734458 Msa1159990:CDS
AACTGGAGCTTCCGTGAGCT+TGG 0.471763 7_4:-49735383 None:intergenic
ATGATTTCACAGCTGTTCTC+GGG 0.473595 7_4:-49735024 None:intergenic
GATATATCAATAGCTGGCTT+AGG 0.477297 7_4:+49738311 Msa1159990:CDS
TGACAGAATTACCTGAGAAA+TGG 0.477590 7_4:-49734307 None:intergenic
TCTCTTCCTTCACTCAAAAG+TGG 0.478855 7_4:-49734425 None:intergenic
GGTTTACACATGCAGGTGTT+GGG 0.484442 7_4:+49734708 Msa1159990:CDS
ACACATGCAGGTGTTGGGTA+TGG 0.488558 7_4:+49734713 Msa1159990:CDS
GAAATCATTGTTTAAGGCGT+TGG 0.489325 7_4:+49735039 Msa1159990:CDS
TAAGGCGTTGGAAGGTATGC+AGG 0.490229 7_4:+49735051 Msa1159990:CDS
GAGAACCCTTGGTACTTGAC+CGG 0.493341 7_4:+49738408 Msa1159990:CDS
ATGTGAAGTGTTGTTGAAGA+TGG 0.493552 7_4:-49734270 None:intergenic
ATTCCACAACCAGGGCAAAT+GGG 0.499402 7_4:-49734467 None:intergenic
GCTAAGATGTTTGATACTCC+AGG 0.502024 7_4:+49735457 Msa1159990:CDS
GCTTGTGCTTGTAGCTACTA+AGG 0.503081 7_4:+49735105 Msa1159990:CDS
GATGATAAGGTTGATTTGGA+TGG 0.503846 7_4:+49734686 Msa1159990:CDS
TCTACTATCTCTTCTTGGAG+TGG 0.505813 7_4:-49734399 None:intergenic
TGCATGGATATATCAATAGC+TGG 0.506724 7_4:+49738305 Msa1159990:CDS
AATAACTTTGAGAGAACCCT+TGG 0.507560 7_4:+49738397 Msa1159990:CDS
CACTTGCCCATAATTTCTCA+AGG 0.508468 7_4:-49734861 None:intergenic
GGGTTTACACATGCAGGTGT+TGG 0.508928 7_4:+49734707 Msa1159990:CDS
TCGTTTGTAAAGGATTTGGC+TGG 0.510437 7_4:+49735268 Msa1159990:CDS
CTAAACTTGAAGCTCAAAGA+AGG 0.517692 7_4:+49738498 Msa1159990:CDS
TCCAACGAGATTGGATAGAT+GGG 0.521308 7_4:+49735153 Msa1159990:CDS
GTTCGACACCGTGCAAGTGC+GGG 0.521405 7_4:+49735175 Msa1159990:CDS
AGCTGCACGGTCATTACCAA+TGG 0.522478 7_4:-49738222 None:intergenic
GCGCTCCTCCCGCACTTGCA+CGG 0.523136 7_4:-49735183 None:intergenic
ATTTCATGGTTGCTTCACCT+TGG 0.524733 7_4:-49738352 None:intergenic
AAAAGCTGAGAAGAAGAGAA+TGG 0.524889 7_4:+49734784 Msa1159990:CDS
AATGCATTTGCGAAGAAAGA+AGG 0.526413 7_4:+49735349 Msa1159990:CDS
TATGGCGGAGAATTTGATAC+CGG 0.527223 7_4:+49734892 Msa1159990:CDS
TGGTGAAGAAAATGATGATA+AGG 0.530082 7_4:+49734673 Msa1159990:CDS
TGGGAATGTTTGGGTTATTG+GGG 0.530401 7_4:+49735297 Msa1159990:CDS
TATCAATAGCTGGCTTAGGT+TGG 0.531865 7_4:+49738315 Msa1159990:CDS
GAATGTGTTGTCGTTTGTAA+AGG 0.536654 7_4:+49735258 Msa1159990:CDS
AATGACCGTGCAGCTGAACT+AGG 0.537048 7_4:+49738230 Msa1159990:CDS
GGTTCGACACCGTGCAAGTG+CGG 0.543827 7_4:+49735174 Msa1159990:CDS
TCACGGAAGCTCCAGTTCCT+GGG 0.544460 7_4:+49735389 Msa1159990:CDS
AAATATGGATGCAAGAGCCC+TGG 0.544879 7_4:-49735475 None:intergenic
TTGGATGGGTTTACACATGC+AGG 0.545868 7_4:+49734701 Msa1159990:CDS
ACTAGGTACATGGAAAGAAA+GGG 0.546033 7_4:+49738247 Msa1159990:CDS
CAGTTCCTGGGACGACACTT+GGG 0.551841 7_4:+49735401 Msa1159990:CDS
AAGAGGTTACTGTTTGTGCT+AGG 0.552753 7_4:+49734831 Msa1159990:CDS
TGGGGCCCGGTCAAGTACCA+AGG 0.553988 7_4:-49738414 None:intergenic
TTATGAATTAGATGATGAAG+AGG 0.554557 7_4:+49734571 Msa1159990:CDS
TTATTTGGTCAGTTCTCGAA+AGG 0.555655 7_4:+49735222 Msa1159990:CDS
AAATAAACTGCGCTTAACTT+AGG 0.557086 7_4:-49735205 None:intergenic
ATGGAAGTGAGGTTTGTGGA+GGG 0.559070 7_4:-49734251 None:intergenic
AAGATCCCAAGTGTCGTCCC+AGG 0.560862 7_4:-49735406 None:intergenic
ATGATAAGGTTGATTTGGAT+GGG 0.561803 7_4:+49734687 Msa1159990:CDS
AGTATCAAACATCTTAGCCT+TGG 0.563347 7_4:-49735452 None:intergenic
GAATCGGGAGGAACAAAAGA+TGG 0.563445 7_4:+49735513 Msa1159990:CDS
TTATTGGGGCTCAAAATGCT+GGG 0.563591 7_4:+49735311 Msa1159990:CDS
TATGCAGGAGAATACGAAGA+AGG 0.563855 7_4:+49735066 Msa1159990:CDS
AGCTGAGAAGGTGAAAGAAG+AGG 0.565962 7_4:+49734814 Msa1159990:CDS
TGAGTGGGATTCTGATGAGT+TGG 0.568139 7_4:+49734637 Msa1159990:CDS
GGACGACACTTGGGATCTTG+AGG 0.569949 7_4:+49735410 Msa1159990:CDS
TGCATGAAAATTCCACAACC+AGG 0.571943 7_4:-49734476 None:intergenic
GTATGGTAATGTTACTGAGG+AGG 0.576200 7_4:+49734730 Msa1159990:CDS
GCTGCACGGTCATTACCAAT+GGG 0.578102 7_4:-49738221 None:intergenic
TGTTGTTGAAGATGGAAGTG+AGG 0.578584 7_4:-49734262 None:intergenic
ACCCATCTATCCAATCTCGT+TGG 0.580294 7_4:-49735154 None:intergenic
TTGGAGAAACTTGTGATGGT+AGG 0.582675 7_4:-49735135 None:intergenic
TCATTGTTTAAGGCGTTGGA+AGG 0.583218 7_4:+49735043 Msa1159990:CDS
AAGGATTTGGCTGGTCCTCG+TGG 0.584981 7_4:+49735277 Msa1159990:CDS
TTGATAGGTTGATTTCGACT+AGG 0.590775 7_4:+49734924 Msa1159990:CDS
GAGTTGGAAGCTATGTTACT+TGG 0.590848 7_4:+49734653 Msa1159990:CDS
TTGATGAATCCTGCTGGTAG+TGG 0.594318 7_4:+49734947 Msa1159990:CDS
GTGCAGCTGAACTAGGTACA+TGG 0.597445 7_4:+49738237 Msa1159990:CDS
ACTAGGTTGATGAATCCTGC+TGG 0.598821 7_4:+49734941 Msa1159990:CDS
ATGCAGGAGAATACGAAGAA+GGG 0.602640 7_4:+49735067 Msa1159990:CDS
AGCCAAAGTTACCAAGCTCA+CGG 0.603218 7_4:+49735372 Msa1159990:CDS
GAAGATGGAAGTGAGGTTTG+TGG 0.604625 7_4:-49734255 None:intergenic
TAGTTGGGATGTCAACTGCA+TGG 0.607782 7_4:+49738289 Msa1159990:CDS
AGGATTTGGCTGGTCCTCGT+GGG 0.608181 7_4:+49735278 Msa1159990:CDS
AGAACCCTTGGTACTTGACC+GGG 0.608960 7_4:+49738409 Msa1159990:CDS
CTAAGATGTTTGATACTCCA+GGG 0.609823 7_4:+49735458 Msa1159990:CDS
CTCGTTGGAGAAACTTGTGA+TGG 0.618625 7_4:-49735139 None:intergenic
CTCGAAAGGATTTAGGTGTG+AGG 0.627464 7_4:+49735236 Msa1159990:CDS
TTAGATGATGAAGAGGATGA+TGG 0.631185 7_4:+49734578 Msa1159990:CDS
TGGGTATGGTAATGTTACTG+AGG 0.631410 7_4:+49734727 Msa1159990:CDS
GTAGAACTACCACTACCAGC+AGG 0.633252 7_4:-49734956 None:intergenic
AGATGAAGATACAGAATACG+TGG 0.643634 7_4:+49738532 Msa1159990:CDS
TGTAGAGAACAAGATAGCCA+TGG 0.649233 7_4:-49734219 None:intergenic
GCATGAAAATTCCACAACCA+GGG 0.653706 7_4:-49734475 None:intergenic
ATGAAGATACAGAATACGTG+GGG 0.654387 7_4:+49738534 Msa1159990:CDS
GTCGATGAGATTGAATCGGG+AGG 0.655289 7_4:+49735501 Msa1159990:CDS
GATGGAAGTGAGGTTTGTGG+AGG 0.660712 7_4:-49734252 None:intergenic
ATGTACCTAGTTCAGCTGCA+CGG 0.671351 7_4:-49738235 None:intergenic
GATGAAGATACAGAATACGT+GGG 0.672332 7_4:+49738533 Msa1159990:CDS
GCACGGTCATTACCAATGGG+AGG 0.681502 7_4:-49738218 None:intergenic
AAATGATGATGAGACTGAGT+GGG 0.704615 7_4:+49734622 Msa1159990:CDS
CAAATGATGATGAGACTGAG+TGG 0.710609 7_4:+49734621 Msa1159990:CDS
GCAAGTGAAGAATTATATGG+CGG 0.722487 7_4:+49734877 Msa1159990:CDS
TGAAGATACAGAATACGTGG+GGG 0.760914 7_4:+49738535 Msa1159990:CDS
ATAACCCAAACATTCCCACG+AGG 0.804924 7_4:-49735292 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATGAAAAACATAAATTA+GGG - chr7_4:49738184-49738203 None:intergenic 10.0%
!! AAAAATGAAAAACATAAATT+AGG - chr7_4:49738185-49738204 None:intergenic 10.0%
!! AAGAAATTACATACTTTATT+AGG + chr7_4:49736832-49736851 Msa1159990:intron 15.0%
!! AGAAATTACATACTTTATTA+GGG + chr7_4:49736833-49736852 Msa1159990:intron 15.0%
!! GAAAAGTAATAAAACATTTA+TGG - chr7_4:49737065-49737084 None:intergenic 15.0%
!! TGTGATTAAAATAAATACTA+TGG - chr7_4:49737986-49738005 None:intergenic 15.0%
!!! TTAAATGTTTTTATCTGTGT+TGG + chr7_4:49735990-49736009 Msa1159990:intron 20.0%
!! TAGAAAATGCTAATGATATT+TGG + chr7_4:49736406-49736425 Msa1159990:intron 20.0%
!! AGACAAATAAATCAATCAAA+TGG - chr7_4:49736541-49736560 None:intergenic 20.0%
!!! TATCTTTTGATTTTCTTAAG+TGG + chr7_4:49736681-49736700 Msa1159990:intron 20.0%
!!! ATCTTTTGATTTTCTTAAGT+GGG + chr7_4:49736682-49736701 Msa1159990:intron 20.0%
!!! TGAAGCATTTTAAACAAATT+GGG - chr7_4:49736861-49736880 None:intergenic 20.0%
!!! TTGAAGCATTTTAAACAAAT+TGG - chr7_4:49736862-49736881 None:intergenic 20.0%
!!! AATTTGTTTAAAATGCTTCA+AGG + chr7_4:49736861-49736880 Msa1159990:intron 20.0%
!!! ATTTGTTTAAAATGCTTCAA+GGG + chr7_4:49736862-49736881 Msa1159990:intron 20.0%
!! CAAAAAAAAGAATAAAGAGA+GGG - chr7_4:49737428-49737447 None:intergenic 20.0%
!! TCAAAAAAAAGAATAAAGAG+AGG - chr7_4:49737429-49737448 None:intergenic 20.0%
!! TAACAGATTTCTTAAAATCA+GGG + chr7_4:49737471-49737490 Msa1159990:intron 20.0%
!! AATTTATATTACTAACTAGC+AGG - chr7_4:49737619-49737638 None:intergenic 20.0%
!!! TAATTTTTGTCACATTAATG+TGG - chr7_4:49737776-49737795 None:intergenic 20.0%
!! AATGTGACAAAAATTAAGTA+TGG + chr7_4:49737780-49737799 Msa1159990:intron 20.0%
!!! TACGAAATTAATTTGTCTAT+AGG + chr7_4:49737892-49737911 Msa1159990:intron 20.0%
! TTATGAATTAGATGATGAAG+AGG + chr7_4:49734571-49734590 Msa1159990:CDS 25.0%
!! AAATGATGATAAGGTTGATT+TGG + chr7_4:49734682-49734701 Msa1159990:CDS 25.0%
! AACCTATCAAAATCAAAATC+CGG - chr7_4:49734914-49734933 None:intergenic 25.0%
! AATCTCATCGACAATAAATA+TGG - chr7_4:49735493-49735512 None:intergenic 25.0%
! GTTACAATAGATAAAGAAAG+TGG - chr7_4:49735834-49735853 None:intergenic 25.0%
! ATAATCGTACATAATCTGAT+AGG - chr7_4:49735911-49735930 None:intergenic 25.0%
! ATATTGACGTATATTTCACA+AGG + chr7_4:49736225-49736244 Msa1159990:intron 25.0%
!! GATATTTGGAATAATCATGT+TGG + chr7_4:49736420-49736439 Msa1159990:intron 25.0%
!!! TCTTTTGATTTTCTTAAGTG+GGG + chr7_4:49736683-49736702 Msa1159990:intron 25.0%
! TGGGATTACTTTATAAGTAT+AGG + chr7_4:49736949-49736968 Msa1159990:intron 25.0%
! TTATAAGTATAGGAGCTTAT+AGG + chr7_4:49736959-49736978 Msa1159990:intron 25.0%
! ATAGGTATATATAAGCGTAT+AGG + chr7_4:49736977-49736996 Msa1159990:intron 25.0%
!! AATTTTTACTTGCGTTCAAA+TGG - chr7_4:49737113-49737132 None:intergenic 25.0%
!! AGTTTCCTATCTTGATTTTA+CGG - chr7_4:49737227-49737246 None:intergenic 25.0%
! GGAAACTGTATATTATTGAA+TGG + chr7_4:49737240-49737259 Msa1159990:intron 25.0%
! GTAACAGATTTCTTAAAATC+AGG + chr7_4:49737470-49737489 Msa1159990:intron 25.0%
!!! CACTGTAAGCTTTAAATTAA+AGG - chr7_4:49737680-49737699 None:intergenic 25.0%
! TCACATTAAAGTGTAAATCT+TGG + chr7_4:49737725-49737744 Msa1159990:intron 25.0%
!! CTTCTAATATGCTATGTTTT+GGG - chr7_4:49738024-49738043 None:intergenic 25.0%
! CATATTAGAAGGAAAAAAAC+AGG + chr7_4:49738033-49738052 Msa1159990:intron 25.0%
!! AGTTATTTCAATTCCATCAT+AGG - chr7_4:49738384-49738403 None:intergenic 25.0%
!! TCTTTTTGTTGGTAAAAACC+AGG - chr7_4:49734521-49734540 None:intergenic 30.0%
! TGGTTTTTACCAACAAAAAG+AGG + chr7_4:49734520-49734539 Msa1159990:CDS 30.0%
!! CAATTTTGACCTCTTTTTGT+TGG - chr7_4:49734532-49734551 None:intergenic 30.0%
ATGGTGAAGTAGAAGATAAA+GGG + chr7_4:49734597-49734616 Msa1159990:CDS 30.0%
TGGTGAAGAAAATGATGATA+AGG + chr7_4:49734673-49734692 Msa1159990:CDS 30.0%
!! ATGATAAGGTTGATTTGGAT+GGG + chr7_4:49734687-49734706 Msa1159990:CDS 30.0%
TGTCATTCCTTGAGAAATTA+TGG + chr7_4:49734854-49734873 Msa1159990:CDS 30.0%
GTCATTCCTTGAGAAATTAT+GGG + chr7_4:49734855-49734874 Msa1159990:CDS 30.0%
!!! TACCGGATTTTGATTTTGAT+AGG + chr7_4:49734909-49734928 Msa1159990:CDS 30.0%
! TAGTTCTACTGTTGTTGTTA+TGG + chr7_4:49734970-49734989 Msa1159990:CDS 30.0%
AGCTGTGAAATCATTGTTTA+AGG + chr7_4:49735033-49735052 Msa1159990:CDS 30.0%
AAATAAACTGCGCTTAACTT+AGG - chr7_4:49735208-49735227 None:intergenic 30.0%
TAAGTTAAGCGCAGTTTATT+TGG + chr7_4:49735207-49735226 Msa1159990:CDS 30.0%
TATTGTCGATGAGATTGAAT+CGG + chr7_4:49735497-49735516 Msa1159990:CDS 30.0%
AACAAAAGATGGTTGAGATA+CGG + chr7_4:49735524-49735543 Msa1159990:intron 30.0%
ACCTCGTTCATATAGAATTA+AGG + chr7_4:49735558-49735577 Msa1159990:intron 30.0%
AGTTAGAAACCTTATGGTTT+AGG - chr7_4:49735758-49735777 None:intergenic 30.0%
CAATTCAGTTAGAAACCTTA+TGG - chr7_4:49735764-49735783 None:intergenic 30.0%
AAAGTGGAGAGGTTATATAA+AGG - chr7_4:49735818-49735837 None:intergenic 30.0%
AATAGATAAAGAAAGTGGAG+AGG - chr7_4:49735829-49735848 None:intergenic 30.0%
ATGTATGTATGTGTCTATGT+AGG + chr7_4:49736114-49736133 Msa1159990:intron 30.0%
!!! ACATGTTGGTTTTAATTTGC+AGG + chr7_4:49736266-49736285 Msa1159990:intron 30.0%
AAACAATGTATGTCACTGTT+TGG + chr7_4:49736349-49736368 Msa1159990:intron 30.0%
AACAATGTATGTCACTGTTT+GGG + chr7_4:49736350-49736369 Msa1159990:intron 30.0%
AACAAAAGATGGTCAGAATA+TGG - chr7_4:49736514-49736533 None:intergenic 30.0%
!! CAAATGGATTGAACAAAAGA+TGG - chr7_4:49736525-49736544 None:intergenic 30.0%
! CACCATTTACAATTGTTTCT+AGG + chr7_4:49736751-49736770 Msa1159990:intron 30.0%
TGCCTAGAAACAATTGTAAA+TGG - chr7_4:49736756-49736775 None:intergenic 30.0%
CAAGTAAAAATTCCTGTTAG+TGG + chr7_4:49737121-49737140 Msa1159990:intron 30.0%
! GTTTCCTATCTTGATTTTAC+GGG - chr7_4:49737226-49737245 None:intergenic 30.0%
GAAATCTGTTACAAAAGAGA+GGG - chr7_4:49737462-49737481 None:intergenic 30.0%
AGAAATCTGTTACAAAAGAG+AGG - chr7_4:49737463-49737482 None:intergenic 30.0%
AAAAATTAAGTATGGCCCAT+GGG + chr7_4:49737788-49737807 Msa1159990:intron 30.0%
! CCTTCTAATATGCTATGTTT+TGG - chr7_4:49738025-49738044 None:intergenic 30.0%
CCAAAACATAGCATATTAGA+AGG + chr7_4:49738022-49738041 Msa1159990:intron 30.0%
AAATGATTGATCGTACAGTT+CGG - chr7_4:49738094-49738113 None:intergenic 30.0%
TATCTATTTACCTTAGAGTC+AGG + chr7_4:49738134-49738153 Msa1159990:intron 30.0%
!! TAAAAGTATCTGGATCTAGT+TGG + chr7_4:49738273-49738292 Msa1159990:CDS 30.0%
!! AAAAGTATCTGGATCTAGTT+GGG + chr7_4:49738274-49738293 Msa1159990:CDS 30.0%
ATCATAGGTCCATAATTTCA+TGG - chr7_4:49738369-49738388 None:intergenic 30.0%
ATGAAATTATGGACCTATGA+TGG + chr7_4:49738368-49738387 Msa1159990:CDS 30.0%
! TTTGAGCTTCAAGTTTAGTT+TGG - chr7_4:49738496-49738515 None:intergenic 30.0%
!! ATGTGAAGTGTTGTTGAAGA+TGG - chr7_4:49734273-49734292 None:intergenic 35.0%
TGACAGAATTACCTGAGAAA+TGG - chr7_4:49734310-49734329 None:intergenic 35.0%
CTTCACAGCAAAAGCAATAA+AGG - chr7_4:49734357-49734376 None:intergenic 35.0%
! TCTTGGAGTGGTTTTTCTTA+TGG - chr7_4:49734390-49734409 None:intergenic 35.0%
TGGTAAAAACCAGGAAGATT+CGG - chr7_4:49734512-49734531 None:intergenic 35.0%
TTAGATGATGAAGAGGATGA+TGG + chr7_4:49734578-49734597 Msa1159990:CDS 35.0%
GATGGTGAAGTAGAAGATAA+AGG + chr7_4:49734596-49734615 Msa1159990:CDS 35.0%
! AAATGATGATGAGACTGAGT+GGG + chr7_4:49734622-49734641 Msa1159990:CDS 35.0%
!! GATGATAAGGTTGATTTGGA+TGG + chr7_4:49734686-49734705 Msa1159990:CDS 35.0%
AAAAGCTGAGAAGAAGAGAA+TGG + chr7_4:49734784-49734803 Msa1159990:CDS 35.0%
TGAGAAGAAGAGAATGGTTA+GGG + chr7_4:49734790-49734809 Msa1159990:CDS 35.0%
TGGGCAAGTGAAGAATTATA+TGG + chr7_4:49734874-49734893 Msa1159990:CDS 35.0%
GCAAGTGAAGAATTATATGG+CGG + chr7_4:49734877-49734896 Msa1159990:CDS 35.0%
!! TTGATAGGTTGATTTCGACT+AGG + chr7_4:49734924-49734943 Msa1159990:CDS 35.0%
! TACTGTTGTTGTTATGGTTG+TGG + chr7_4:49734976-49734995 Msa1159990:CDS 35.0%
!!! GTGGATTGTGTTGATTTTGA+TGG + chr7_4:49734995-49735014 Msa1159990:CDS 35.0%
AATGATTTCACAGCTGTTCT+CGG - chr7_4:49735028-49735047 None:intergenic 35.0%
! GAAATCATTGTTTAAGGCGT+TGG + chr7_4:49735039-49735058 Msa1159990:CDS 35.0%
TTATTTGGTCAGTTCTCGAA+AGG + chr7_4:49735222-49735241 Msa1159990:CDS 35.0%
! GAATGTGTTGTCGTTTGTAA+AGG + chr7_4:49735258-49735277 Msa1159990:CDS 35.0%
! GTTGTCGTTTGTAAAGGATT+TGG + chr7_4:49735264-49735283 Msa1159990:CDS 35.0%
AATGCATTTGCGAAGAAAGA+AGG + chr7_4:49735349-49735368 Msa1159990:CDS 35.0%
AGTATCAAACATCTTAGCCT+TGG - chr7_4:49735455-49735474 None:intergenic 35.0%
CTAAGATGTTTGATACTCCA+GGG + chr7_4:49735458-49735477 Msa1159990:CDS 35.0%
ATTGTCGATGAGATTGAATC+GGG + chr7_4:49735498-49735517 Msa1159990:CDS 35.0%
GCCTTAATTCTATATGAACG+AGG - chr7_4:49735562-49735581 None:intergenic 35.0%
AGGTTATATAAAGGAAGGAG+AGG - chr7_4:49735809-49735828 None:intergenic 35.0%
TGGAGAGGTTATATAAAGGA+AGG - chr7_4:49735814-49735833 None:intergenic 35.0%
GGATCTAAATATGTATGCAG+AGG - chr7_4:49735890-49735909 None:intergenic 35.0%
GCGAGAAATTATCTGATTTC+TGG + chr7_4:49736025-49736044 Msa1159990:intron 35.0%
CAACTCACTACAGATATTCA+TGG - chr7_4:49736061-49736080 None:intergenic 35.0%
!! TGAGTTGAGTTGAGATTGTA+AGG + chr7_4:49736074-49736093 Msa1159990:intron 35.0%
TCGCATATTGCGTAAAATAG+CGG - chr7_4:49736199-49736218 None:intergenic 35.0%
GCTGTTTGAATCTTACATGT+TGG + chr7_4:49736252-49736271 Msa1159990:intron 35.0%
GACATACATTGTTTGAACAG+AGG - chr7_4:49736343-49736362 None:intergenic 35.0%
ACCAAATGTTTCTCTACACA+TGG + chr7_4:49736377-49736396 Msa1159990:intron 35.0%
CCAAATGTTTCTCTACACAT+GGG + chr7_4:49736378-49736397 Msa1159990:intron 35.0%
GTGCAAAGTATAACAGGAAA+AGG - chr7_4:49736464-49736483 None:intergenic 35.0%
TCAGTAGTGCAAAGTATAAC+AGG - chr7_4:49736470-49736489 None:intergenic 35.0%
TGTTATACTTTGCACTACTG+AGG + chr7_4:49736469-49736488 Msa1159990:intron 35.0%
GATCTTGCAAATCTCACTTT+AGG + chr7_4:49736573-49736592 Msa1159990:intron 35.0%
! ATTTTGCACAGTTTCTCTGT+TGG + chr7_4:49736612-49736631 Msa1159990:intron 35.0%
! ATTTTCTTAAGTGGGGTTGA+GGG + chr7_4:49736690-49736709 Msa1159990:intron 35.0%
CAATATATTCACTGTGTGTG+AGG - chr7_4:49736788-49736807 None:intergenic 35.0%
CTCACACACAGTGAATATAT+TGG + chr7_4:49736786-49736805 Msa1159990:intron 35.0%
AAACTGAAGAATAGAACACG+TGG - chr7_4:49736888-49736907 None:intergenic 35.0%
TATATCAGTAGCATGCAAGT+TGG + chr7_4:49736923-49736942 Msa1159990:intron 35.0%
ATATCAGTAGCATGCAAGTT+GGG + chr7_4:49736924-49736943 Msa1159990:intron 35.0%
AGAACCCGTAAAATCAAGAT+AGG + chr7_4:49737219-49737238 Msa1159990:intron 35.0%
AGAATGTAAACCAGAGTTCT+AGG + chr7_4:49737310-49737329 Msa1159990:intron 35.0%
AAAAGCTGTTAGAGTCAGTT+AGG - chr7_4:49737381-49737400 None:intergenic 35.0%
CAATAACCAAGCTGAATAGA+GGG - chr7_4:49737519-49737538 None:intergenic 35.0%
ACTGAAAGAAAGATAGTGAC+AGG - chr7_4:49737564-49737583 None:intergenic 35.0%
CAAAAATTAAGTATGGCCCA+TGG + chr7_4:49737787-49737806 Msa1159990:intron 35.0%
AAAATTAAGTATGGCCCATG+GGG + chr7_4:49737789-49737808 Msa1159990:intron 35.0%
! TGGTTTTCAGATGTATTGCT+TGG + chr7_4:49737826-49737845 Msa1159990:intron 35.0%
ATTTGTCTATAGGTCGAGTA+TGG + chr7_4:49737902-49737921 Msa1159990:intron 35.0%
!!! ATGCTATGTTTTGGGTTACA+AGG - chr7_4:49738016-49738035 None:intergenic 35.0%
ATTTACCTTAGAGTCAGGTT+TGG + chr7_4:49738139-49738158 Msa1159990:intron 35.0%
AACTAGGTACATGGAAAGAA+AGG + chr7_4:49738246-49738265 Msa1159990:CDS 35.0%
ACTAGGTACATGGAAAGAAA+GGG + chr7_4:49738247-49738266 Msa1159990:CDS 35.0%
!! GAAAGGGAAGTAAAAGTATC+TGG + chr7_4:49738263-49738282 Msa1159990:CDS 35.0%
TGCATGGATATATCAATAGC+TGG + chr7_4:49738305-49738324 Msa1159990:CDS 35.0%
! GATATATCAATAGCTGGCTT+AGG + chr7_4:49738311-49738330 Msa1159990:CDS 35.0%
GTGAAGCAACCATGAAATTA+TGG + chr7_4:49738357-49738376 Msa1159990:CDS 35.0%
! AATAACTTTGAGAGAACCCT+TGG + chr7_4:49738397-49738416 Msa1159990:CDS 35.0%
!! CCAAAAACCTGGTTTTTCAA+GGG - chr7_4:49738441-49738460 None:intergenic 35.0%
!! ACCAAAAACCTGGTTTTTCA+AGG - chr7_4:49738442-49738461 None:intergenic 35.0%
! ATAGCTTCAGATAGAGCTTT+TGG - chr7_4:49738467-49738486 None:intergenic 35.0%
! AAAGCTCTATCTGAAGCTAT+TGG + chr7_4:49738467-49738486 Msa1159990:CDS 35.0%
CTAAACTTGAAGCTCAAAGA+AGG + chr7_4:49738498-49738517 Msa1159990:CDS 35.0%
AGATGAAGATACAGAATACG+TGG + chr7_4:49738532-49738551 Msa1159990:CDS 35.0%
GATGAAGATACAGAATACGT+GGG + chr7_4:49738533-49738552 Msa1159990:CDS 35.0%
ATGAAGATACAGAATACGTG+GGG + chr7_4:49738534-49738553 Msa1159990:CDS 35.0%
TGTTGTTGAAGATGGAAGTG+AGG - chr7_4:49734265-49734284 None:intergenic 40.0%
! TGGAGTGGTTTTTCTTATGG+CGG - chr7_4:49734387-49734406 None:intergenic 40.0%
TCTACTATCTCTTCTTGGAG+TGG - chr7_4:49734402-49734421 None:intergenic 40.0%
GGGTTTCTACTATCTCTTCT+TGG - chr7_4:49734407-49734426 None:intergenic 40.0%
!! AGAAACCCACTTTTGAGTGA+AGG + chr7_4:49734419-49734438 Msa1159990:CDS 40.0%
CTCTTCCTTCACTCAAAAGT+GGG - chr7_4:49734427-49734446 None:intergenic 40.0%
TCTCTTCCTTCACTCAAAAG+TGG - chr7_4:49734428-49734447 None:intergenic 40.0%
AGAGATGAAGATGAAGCTCT+TGG + chr7_4:49734443-49734462 Msa1159990:CDS 40.0%
GCATGAAAATTCCACAACCA+GGG - chr7_4:49734478-49734497 None:intergenic 40.0%
TGCATGAAAATTCCACAACC+AGG - chr7_4:49734479-49734498 None:intergenic 40.0%
GATAATGATCCGAATCTTCC+TGG + chr7_4:49734500-49734519 Msa1159990:CDS 40.0%
! CAAATGATGATGAGACTGAG+TGG + chr7_4:49734621-49734640 Msa1159990:CDS 40.0%
GAGTTGGAAGCTATGTTACT+TGG + chr7_4:49734653-49734672 Msa1159990:CDS 40.0%
! TGGGTATGGTAATGTTACTG+AGG + chr7_4:49734727-49734746 Msa1159990:CDS 40.0%
! GTATGGTAATGTTACTGAGG+AGG + chr7_4:49734730-49734749 Msa1159990:CDS 40.0%
!!! TTACTGAGGAGGTTTTAGAG+AGG + chr7_4:49734741-49734760 Msa1159990:CDS 40.0%
!!! TACTGAGGAGGTTTTAGAGA+GGG + chr7_4:49734742-49734761 Msa1159990:CDS 40.0%
CTGAGAAGAAGAGAATGGTT+AGG + chr7_4:49734789-49734808 Msa1159990:CDS 40.0%
AAGAGGTTACTGTTTGTGCT+AGG + chr7_4:49734831-49734850 Msa1159990:CDS 40.0%
CACTTGCCCATAATTTCTCA+AGG - chr7_4:49734864-49734883 None:intergenic 40.0%
! TATGGCGGAGAATTTGATAC+CGG + chr7_4:49734892-49734911 Msa1159990:CDS 40.0%
ATGATTTCACAGCTGTTCTC+GGG - chr7_4:49735027-49735046 None:intergenic 40.0%
!! TCATTGTTTAAGGCGTTGGA+AGG + chr7_4:49735043-49735062 Msa1159990:CDS 40.0%
TATGCAGGAGAATACGAAGA+AGG + chr7_4:49735066-49735085 Msa1159990:CDS 40.0%
ATGCAGGAGAATACGAAGAA+GGG + chr7_4:49735067-49735086 Msa1159990:CDS 40.0%
TTGGAGAAACTTGTGATGGT+AGG - chr7_4:49735138-49735157 None:intergenic 40.0%
ACAAGTTTCTCCAACGAGAT+TGG + chr7_4:49735144-49735163 Msa1159990:CDS 40.0%
TCCAACGAGATTGGATAGAT+GGG + chr7_4:49735153-49735172 Msa1159990:CDS 40.0%
GTCAGTTCTCGAAAGGATTT+AGG + chr7_4:49735229-49735248 Msa1159990:CDS 40.0%
TCGTTTGTAAAGGATTTGGC+TGG + chr7_4:49735268-49735287 Msa1159990:CDS 40.0%
! GTGGGAATGTTTGGGTTATT+GGG + chr7_4:49735296-49735315 Msa1159990:CDS 40.0%
! TGGGAATGTTTGGGTTATTG+GGG + chr7_4:49735297-49735316 Msa1159990:CDS 40.0%
TTATTGGGGCTCAAAATGCT+GGG + chr7_4:49735311-49735330 Msa1159990:CDS 40.0%
GCTAAGATGTTTGATACTCC+AGG + chr7_4:49735457-49735476 Msa1159990:CDS 40.0%
AAAGATGGTTGAGATACGGA+AGG + chr7_4:49735528-49735547 Msa1159990:intron 40.0%
AGAGAAACATCTCTTCTCTG+AGG - chr7_4:49735730-49735749 None:intergenic 40.0%
TGTAACTAACTCCCTCTAAG+TGG + chr7_4:49735848-49735867 Msa1159990:intron 40.0%
GTAACTAACTCCCTCTAAGT+GGG + chr7_4:49735849-49735868 Msa1159990:intron 40.0%
TAAGTGGGCCTTGAACATTT+GGG + chr7_4:49735864-49735883 Msa1159990:intron 40.0%
TAATGTCATAGCGTCGCTAT+AGG - chr7_4:49736153-49736172 None:intergenic 40.0%
!!! GTTGGTTTTAATTTGCAGGC+TGG + chr7_4:49736270-49736289 Msa1159990:intron 40.0%
CCCATGTGTAGAGAAACATT+TGG - chr7_4:49736381-49736400 None:intergenic 40.0%
CACTACTGAGGAGATACAAT+CGG + chr7_4:49736481-49736500 Msa1159990:intron 40.0%
GAGATTTGCAAGATCAGAGA+GGG - chr7_4:49736568-49736587 None:intergenic 40.0%
TGAGATTTGCAAGATCAGAG+AGG - chr7_4:49736569-49736588 None:intergenic 40.0%
TCACTTTAGGCGTGATATGA+TGG + chr7_4:49736586-49736605 Msa1159990:intron 40.0%
! GATTTTCTTAAGTGGGGTTG+AGG + chr7_4:49736689-49736708 Msa1159990:intron 40.0%
! TTCTGCATTTTCCAACACTG+TGG - chr7_4:49737286-49737305 None:intergenic 40.0%
!! TTTAGGAGTACCTAGAACTC+TGG - chr7_4:49737323-49737342 None:intergenic 40.0%
AAAGAATAAAGAGAGGGCAG+TGG - chr7_4:49737422-49737441 None:intergenic 40.0%
AGAGGGAATAAGAGTCTGTT+GGG - chr7_4:49737502-49737521 None:intergenic 40.0%
TAGAGGGAATAAGAGTCTGT+TGG - chr7_4:49737503-49737522 None:intergenic 40.0%
CTTATTCCCTCTATTCAGCT+TGG + chr7_4:49737510-49737529 Msa1159990:intron 40.0%
CCAATAACCAAGCTGAATAG+AGG - chr7_4:49737520-49737539 None:intergenic 40.0%
CCTCTATTCAGCTTGGTTAT+TGG + chr7_4:49737517-49737536 Msa1159990:intron 40.0%
! TTCAGCTTGGTTATTGGTCT+TGG + chr7_4:49737523-49737542 Msa1159990:intron 40.0%
!! TCAGCTTGGTTATTGGTCTT+GGG + chr7_4:49737524-49737543 Msa1159990:intron 40.0%
GAAAATTTGTGCAGCTTGCA+TGG + chr7_4:49737848-49737867 Msa1159990:intron 40.0%
GGCTCATATTCACTGGTAAA+TGG + chr7_4:49737923-49737942 Msa1159990:intron 40.0%
! TATCAATAGCTGGCTTAGGT+TGG + chr7_4:49738315-49738334 Msa1159990:CDS 40.0%
!!! TGGCTTAGGTTGGTTTTCTT+TGG + chr7_4:49738325-49738344 Msa1159990:CDS 40.0%
!!! GGCTTAGGTTGGTTTTCTTT+GGG + chr7_4:49738326-49738345 Msa1159990:CDS 40.0%
! TGGTTTTCTTTGGGTATCCA+AGG + chr7_4:49738335-49738354 Msa1159990:CDS 40.0%
ATTTCATGGTTGCTTCACCT+TGG - chr7_4:49738355-49738374 None:intergenic 40.0%
!!! AACCTGGTTTTTCAAGGGAT+GGG - chr7_4:49738436-49738455 None:intergenic 40.0%
!!! AAACCTGGTTTTTCAAGGGA+TGG - chr7_4:49738437-49738456 None:intergenic 40.0%
! CCCTTGAAAAACCAGGTTTT+TGG + chr7_4:49738438-49738457 Msa1159990:CDS 40.0%
!! GCTTTTGGTAACCAAAAACC+TGG - chr7_4:49738452-49738471 None:intergenic 40.0%
TGAAGATACAGAATACGTGG+GGG + chr7_4:49738535-49738554 Msa1159990:CDS 40.0%
ATGGAAGTGAGGTTTGTGGA+GGG - chr7_4:49734254-49734273 None:intergenic 45.0%
GAAGATGGAAGTGAGGTTTG+TGG - chr7_4:49734258-49734277 None:intergenic 45.0%
! GAGTGGTTTTTCTTATGGCG+GGG - chr7_4:49734385-49734404 None:intergenic 45.0%
! GGAGTGGTTTTTCTTATGGC+GGG - chr7_4:49734386-49734405 None:intergenic 45.0%
ATTCCACAACCAGGGCAAAT+GGG - chr7_4:49734470-49734489 None:intergenic 45.0%
AATTCCACAACCAGGGCAAA+TGG - chr7_4:49734471-49734490 None:intergenic 45.0%
TGAGTGGGATTCTGATGAGT+TGG + chr7_4:49734637-49734656 Msa1159990:CDS 45.0%
! TTGGATGGGTTTACACATGC+AGG + chr7_4:49734701-49734720 Msa1159990:CDS 45.0%
GGTTTACACATGCAGGTGTT+GGG + chr7_4:49734708-49734727 Msa1159990:CDS 45.0%
AGAGAGGGCTAAGAAGAAGA+AGG + chr7_4:49734757-49734776 Msa1159990:CDS 45.0%
AATGGTTAGGGAAGCTGAGA+AGG + chr7_4:49734802-49734821 Msa1159990:CDS 45.0%
AGCTGAGAAGGTGAAAGAAG+AGG + chr7_4:49734814-49734833 Msa1159990:CDS 45.0%
!! ACTAGGTTGATGAATCCTGC+TGG + chr7_4:49734941-49734960 Msa1159990:CDS 45.0%
TTGATGAATCCTGCTGGTAG+TGG + chr7_4:49734947-49734966 Msa1159990:CDS 45.0%
GTAGCTACAAGCACAAGCTT+TGG - chr7_4:49735103-49735122 None:intergenic 45.0%
GCTTGTGCTTGTAGCTACTA+AGG + chr7_4:49735105-49735124 Msa1159990:CDS 45.0%
CTCGTTGGAGAAACTTGTGA+TGG - chr7_4:49735142-49735161 None:intergenic 45.0%
CTCCAACGAGATTGGATAGA+TGG + chr7_4:49735152-49735171 Msa1159990:CDS 45.0%
ACCCATCTATCCAATCTCGT+TGG - chr7_4:49735157-49735176 None:intergenic 45.0%
CTCGAAAGGATTTAGGTGTG+AGG + chr7_4:49735236-49735255 Msa1159990:CDS 45.0%
ATAACCCAAACATTCCCACG+AGG - chr7_4:49735295-49735314 None:intergenic 45.0%
! CGTGGGAATGTTTGGGTTAT+TGG + chr7_4:49735295-49735314 Msa1159990:CDS 45.0%
GTTATTGGGGCTCAAAATGC+TGG + chr7_4:49735310-49735329 Msa1159990:CDS 45.0%
AGCCAAAGTTACCAAGCTCA+CGG + chr7_4:49735372-49735391 Msa1159990:CDS 45.0%
! TTCCGTGAGCTTGGTAACTT+TGG - chr7_4:49735377-49735396 None:intergenic 45.0%
! TGCAGGAATTTTGTCAGCCA+AGG + chr7_4:49735435-49735454 Msa1159990:CDS 45.0%
AAATATGGATGCAAGAGCCC+TGG - chr7_4:49735478-49735497 None:intergenic 45.0%
GAATCGGGAGGAACAAAAGA+TGG + chr7_4:49735513-49735532 Msa1159990:CDS 45.0%
CTCTCTCTGCCTAAACCATA+AGG + chr7_4:49735746-49735765 Msa1159990:intron 45.0%
AGGAAGGAGAGGATAGAGTT+AGG - chr7_4:49735798-49735817 None:intergenic 45.0%
ATGTTCAAGGCCCACTTAGA+GGG - chr7_4:49735862-49735881 None:intergenic 45.0%
AATGTTCAAGGCCCACTTAG+AGG - chr7_4:49735863-49735882 None:intergenic 45.0%
CTAAGTGGGCCTTGAACATT+TGG + chr7_4:49735863-49735882 Msa1159990:intron 45.0%
GCTGGACAAGCTATTCATGT+TGG + chr7_4:49736288-49736307 Msa1159990:intron 45.0%
GGACAAGCTATTCATGTTGG+TGG + chr7_4:49736291-49736310 Msa1159990:intron 45.0%
!! AGCTATTCATGTTGGTGGCT+TGG + chr7_4:49736296-49736315 Msa1159990:intron 45.0%
GGAATAATCATGTTGGCGTC+AGG + chr7_4:49736427-49736446 Msa1159990:intron 45.0%
! AGTAGCATGCAAGTTGGGAT+TGG + chr7_4:49736929-49736948 Msa1159990:intron 45.0%
! GTAGCATGCAAGTTGGGATT+GGG + chr7_4:49736930-49736949 Msa1159990:intron 45.0%
ACTGTTCTGCATCATGGACA+TGG + chr7_4:49737146-49737165 Msa1159990:intron 45.0%
GAGAGGTTTCTCTCTGGTTA+GGG - chr7_4:49737359-49737378 None:intergenic 45.0%
AGTTAGGAGAGGTTTCTCTC+TGG - chr7_4:49737365-49737384 None:intergenic 45.0%
CTGTTAGAGTCAGTTAGGAG+AGG - chr7_4:49737376-49737395 None:intergenic 45.0%
TGTTACAAAAGAGAGGGCAG+TGG - chr7_4:49737456-49737475 None:intergenic 45.0%
!!! AGTGACAGGACACTGGTTTT+GGG - chr7_4:49737550-49737569 None:intergenic 45.0%
!!! TAGTGACAGGACACTGGTTT+TGG - chr7_4:49737551-49737570 None:intergenic 45.0%
GAAAGATAGTGACAGGACAC+TGG - chr7_4:49737557-49737576 None:intergenic 45.0%
ACAGTGAGCTATCGTGATTC+TGG + chr7_4:49737694-49737713 Msa1159990:intron 45.0%
CGAGTATGGCTCATATTCAC+TGG + chr7_4:49737916-49737935 Msa1159990:intron 45.0%
CATCCAACTGACAGAGACTA+AGG + chr7_4:49738059-49738078 Msa1159990:intron 45.0%
GACAGAGACTAAGGCACAAT+TGG + chr7_4:49738068-49738087 Msa1159990:intron 45.0%
GAACACCAAACCTGACTCTA+AGG - chr7_4:49738147-49738166 None:intergenic 45.0%
TTCTTATTCCAGCCTCCCAT+TGG + chr7_4:49738206-49738225 Msa1159990:intron 45.0%
ATGTACCTAGTTCAGCTGCA+CGG - chr7_4:49738238-49738257 None:intergenic 45.0%
TAGTTGGGATGTCAACTGCA+TGG + chr7_4:49738289-49738308 Msa1159990:CDS 45.0%
!!! ACCTGGTTTTTCAAGGGATG+GGG - chr7_4:49738435-49738454 None:intergenic 45.0%
GATGGAAGTGAGGTTTGTGG+AGG - chr7_4:49734255-49734274 None:intergenic 50.0%
GGGTTTACACATGCAGGTGT+TGG + chr7_4:49734707-49734726 Msa1159990:CDS 50.0%
!! ACACATGCAGGTGTTGGGTA+TGG + chr7_4:49734713-49734732 Msa1159990:CDS 50.0%
GTAGAACTACCACTACCAGC+AGG - chr7_4:49734959-49734978 None:intergenic 50.0%
!! TAAGGCGTTGGAAGGTATGC+AGG + chr7_4:49735051-49735070 Msa1159990:CDS 50.0%
TGGTCCTCGTGGGAATGTTT+GGG + chr7_4:49735288-49735307 Msa1159990:CDS 50.0%
CTTGGGATCTTGAGGATTGC+AGG + chr7_4:49735418-49735437 Msa1159990:CDS 50.0%
GTCGATGAGATTGAATCGGG+AGG + chr7_4:49735501-49735520 Msa1159990:CDS 50.0%
!! AGCTTCTGCTCTAGGGTTAC+AGG - chr7_4:49735707-49735726 None:intergenic 50.0%
TCTGAGGAGCTTCTGCTCTA+GGG - chr7_4:49735714-49735733 None:intergenic 50.0%
TGCAGAGGCCCAAATGTTCA+AGG - chr7_4:49735875-49735894 None:intergenic 50.0%
!! TAAGTGGGGTTGAGGGTACT+AGG + chr7_4:49736697-49736716 Msa1159990:intron 50.0%
GCAGAACAGTTGCCACTAAC+AGG - chr7_4:49737136-49737155 None:intergenic 50.0%
GTGGCAACTGTTCTGCATCA+TGG + chr7_4:49737140-49737159 Msa1159990:intron 50.0%
GCTTAAGAGCTCCACAGTGT+TGG + chr7_4:49737272-49737291 Msa1159990:intron 50.0%
GGTACTCCTAAACCAGAGCT+AGG + chr7_4:49737331-49737350 Msa1159990:intron 50.0%
GGAGAGGTTTCTCTCTGGTT+AGG - chr7_4:49737360-49737379 None:intergenic 50.0%
TAAAGAGAGGGCAGTGGAGT+GGG - chr7_4:49737416-49737435 None:intergenic 50.0%
ATAAAGAGAGGGCAGTGGAG+TGG - chr7_4:49737417-49737436 None:intergenic 50.0%
ACTCAACCTACACTCCCCAT+GGG - chr7_4:49737806-49737825 None:intergenic 50.0%
AACTCAACCTACACTCCCCA+TGG - chr7_4:49737807-49737826 None:intergenic 50.0%
! ATGGGGAGTGTAGGTTGAGT+TGG + chr7_4:49737806-49737825 Msa1159990:intron 50.0%
GTGCCTTAGTCTCTGTCAGT+TGG - chr7_4:49738065-49738084 None:intergenic 50.0%
GCTGCACGGTCATTACCAAT+GGG - chr7_4:49738224-49738243 None:intergenic 50.0%
AGCTGCACGGTCATTACCAA+TGG - chr7_4:49738225-49738244 None:intergenic 50.0%
AATGACCGTGCAGCTGAACT+AGG + chr7_4:49738230-49738249 Msa1159990:CDS 50.0%
GTGCAGCTGAACTAGGTACA+TGG + chr7_4:49738237-49738256 Msa1159990:CDS 50.0%
GAGAACCCTTGGTACTTGAC+CGG + chr7_4:49738408-49738427 Msa1159990:CDS 50.0%
AGAACCCTTGGTACTTGACC+GGG + chr7_4:49738409-49738428 Msa1159990:CDS 50.0%
ATACAGAATACGTGGGGGCA+AGG + chr7_4:49738540-49738559 Msa1159990:CDS 50.0%
CACGCACTTCGCCATTTCTC+AGG + chr7_4:49734296-49734315 Msa1159990:CDS 55.0%
! AAGGATTTGGCTGGTCCTCG+TGG + chr7_4:49735277-49735296 Msa1159990:CDS 55.0%
! AGGATTTGGCTGGTCCTCGT+GGG + chr7_4:49735278-49735297 Msa1159990:CDS 55.0%
CTGGTCCTCGTGGGAATGTT+TGG + chr7_4:49735287-49735306 Msa1159990:CDS 55.0%
AACTGGAGCTTCCGTGAGCT+TGG - chr7_4:49735386-49735405 None:intergenic 55.0%
TCACGGAAGCTCCAGTTCCT+GGG + chr7_4:49735389-49735408 Msa1159990:CDS 55.0%
CAGTTCCTGGGACGACACTT+GGG + chr7_4:49735401-49735420 Msa1159990:CDS 55.0%
! AAGATCCCAAGTGTCGTCCC+AGG - chr7_4:49735409-49735428 None:intergenic 55.0%
GGACGACACTTGGGATCTTG+AGG + chr7_4:49735410-49735429 Msa1159990:CDS 55.0%
! CTCTGAGGAGCTTCTGCTCT+AGG - chr7_4:49735715-49735734 None:intergenic 55.0%
!! TGGGGTTGAGGGTACTAGGT+AGG + chr7_4:49736701-49736720 Msa1159990:intron 55.0%
!! GGGGTTGAGGGTACTAGGTA+GGG + chr7_4:49736702-49736721 Msa1159990:intron 55.0%
!! GGGTTGAGGGTACTAGGTAG+GGG + chr7_4:49736703-49736722 Msa1159990:intron 55.0%
!! AGGGAGCCTAGCTCTGGTTT+AGG - chr7_4:49737340-49737359 None:intergenic 55.0%
GGTCATTACCAATGGGAGGC+TGG - chr7_4:49738217-49738236 None:intergenic 55.0%
GCACGGTCATTACCAATGGG+AGG - chr7_4:49738221-49738240 None:intergenic 55.0%
!!! GTTTTTCAAGGGATGGGGCC+CGG - chr7_4:49738430-49738449 None:intergenic 55.0%
GCCCCATCCCTTGAAAAACC+AGG + chr7_4:49738431-49738450 Msa1159990:CDS 55.0%
GCTCTTGGACCCATTTGCCC+TGG + chr7_4:49734458-49734477 Msa1159990:CDS 60.0%
GGACCCATTTGCCCTGGTTG+TGG + chr7_4:49734464-49734483 Msa1159990:CDS 60.0%
GGTTCGACACCGTGCAAGTG+CGG + chr7_4:49735174-49735193 Msa1159990:CDS 60.0%
GTTCGACACCGTGCAAGTGC+GGG + chr7_4:49735175-49735194 Msa1159990:CDS 60.0%
CTCACGGAAGCTCCAGTTCC+TGG + chr7_4:49735388-49735407 Msa1159990:CDS 60.0%
! CCAAGTGTCGTCCCAGGAAC+TGG - chr7_4:49735403-49735422 None:intergenic 60.0%
CCAGTTCCTGGGACGACACT+TGG + chr7_4:49735400-49735419 Msa1159990:CDS 60.0%
TCATGTTGGCGTCAGGCTGC+AGG + chr7_4:49736434-49736453 Msa1159990:intron 60.0%
CTGGTTAGGGAGCCTAGCTC+TGG - chr7_4:49737346-49737365 None:intergenic 60.0%
! GTATGGCCCATGGGGAGTGT+AGG + chr7_4:49737797-49737816 Msa1159990:intron 60.0%
GGACGAACGCTCGAGTGTAG+CGG + chr7_4:49737944-49737963 Msa1159990:intron 60.0%
GGGGCCCGGTCAAGTACCAA+GGG - chr7_4:49738416-49738435 None:intergenic 65.0%
TGGGGCCCGGTCAAGTACCA+AGG - chr7_4:49738417-49738436 None:intergenic 65.0%
CGACACCGTGCAAGTGCGGG+AGG + chr7_4:49735178-49735197 Msa1159990:CDS 70.0%
GCGCTCCTCCCGCACTTGCA+CGG - chr7_4:49735186-49735205 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 49734221 49738580 49734221 ID=Msa1159990;Name=Msa1159990
chr7_4 mRNA 49734221 49738580 49734221 ID=Msa1159990-mRNA-1;Parent=Msa1159990;Name=Msa1159990-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|2|0|558
chr7_4 exon 49734221 49735534 49734221 ID=Msa1159990-mRNA-1:exon:13758;Parent=Msa1159990-mRNA-1
chr7_4 exon 49738218 49738580 49738218 ID=Msa1159990-mRNA-1:exon:13759;Parent=Msa1159990-mRNA-1
chr7_4 CDS 49734221 49735534 49734221 ID=Msa1159990-mRNA-1:cds;Parent=Msa1159990-mRNA-1
chr7_4 CDS 49738218 49738580 49738218 ID=Msa1159990-mRNA-1:cds;Parent=Msa1159990-mRNA-1
Gene Sequence

>Msa1159990

ATGGCTATCTTGTTCTCTACAATTGCACTTCCCTCCACAAACCTCACTTCCATCTTCAACAACACTTCACATTCTCACGCACTTCGCCATTTCTCAGGTAATTCTGTCACTAAACGCTTTCATAAAGCTTCTTCCTTTATTGCTTTTGCTGTGAAGAATAACCCCGCCATAAGAAAAACCACTCCAAGAAGAGATAGTAGAAACCCACTTTTGAGTGAAGGAAGAGATGAAGATGAAGCTCTTGGACCCATTTGCCCTGGTTGTGGAATTTTCATGCAAGATAATGATCCGAATCTTCCTGGTTTTTACCAACAAAAAGAGGTCAAAATTGAAGCTTTTTCAGAAGAAGATTATGAATTAGATGATGAAGAGGATGATGGTGAAGTAGAAGATAAAGGGTCAAATGATGATGAGACTGAGTGGGATTCTGATGAGTTGGAAGCTATGTTACTTGGTGAAGAAAATGATGATAAGGTTGATTTGGATGGGTTTACACATGCAGGTGTTGGGTATGGTAATGTTACTGAGGAGGTTTTAGAGAGGGCTAAGAAGAAGAAGGTTTCAAAAGCTGAGAAGAAGAGAATGGTTAGGGAAGCTGAGAAGGTGAAAGAAGAGGTTACTGTTTGTGCTAGGTGTCATTCCTTGAGAAATTATGGGCAAGTGAAGAATTATATGGCGGAGAATTTGATACCGGATTTTGATTTTGATAGGTTGATTTCGACTAGGTTGATGAATCCTGCTGGTAGTGGTAGTTCTACTGTTGTTGTTATGGTTGTGGATTGTGTTGATTTTGATGGTTCTTTCCCGAGAACAGCTGTGAAATCATTGTTTAAGGCGTTGGAAGGTATGCAGGAGAATACGAAGAAGGGTAAGAAACTGCCAAAGCTTGTGCTTGTAGCTACTAAGGTCGATCTCCTACCATCACAAGTTTCTCCAACGAGATTGGATAGATGGGTTCGACACCGTGCAAGTGCGGGAGGAGCGCCTAAGTTAAGCGCAGTTTATTTGGTCAGTTCTCGAAAGGATTTAGGTGTGAGGAATGTGTTGTCGTTTGTAAAGGATTTGGCTGGTCCTCGTGGGAATGTTTGGGTTATTGGGGCTCAAAATGCTGGGAAGTCTACTCTGATCAATGCATTTGCGAAGAAAGAAGGAGCCAAAGTTACCAAGCTCACGGAAGCTCCAGTTCCTGGGACGACACTTGGGATCTTGAGGATTGCAGGAATTTTGTCAGCCAAGGCTAAGATGTTTGATACTCCAGGGCTCTTGCATCCATATTTATTGTCGATGAGATTGAATCGGGAGGAACAAAAGATGCCTCCCATTGGTAATGACCGTGCAGCTGAACTAGGTACATGGAAAGAAAGGGAAGTAAAAGTATCTGGATCTAGTTGGGATGTCAACTGCATGGATATATCAATAGCTGGCTTAGGTTGGTTTTCTTTGGGTATCCAAGGTGAAGCAACCATGAAATTATGGACCTATGATGGAATTGAAATAACTTTGAGAGAACCCTTGGTACTTGACCGGGCCCCATCCCTTGAAAAACCAGGTTTTTGGTTACCAAAAGCTCTATCTGAAGCTATTGGCAACCAAACTAAACTTGAAGCTCAAAGAAGGAAAAAACTTGAAGATGAAGATACAGAATACGTGGGGGCAAGGACAGAGATCTCTGCATGA
Protein sequence

>Msa1159990

MAILFSTIALPSTNLTSIFNNTSHSHALRHFSGNSVTKRFHKASSFIAFAVKNNPAIRKTTPRRDSRNPLLSEGRDEDEALGPICPGCGIFMQDNDPNLPGFYQQKEVKIEAFSEEDYELDDEEDDGEVEDKGSNDDETEWDSDELEAMLLGEENDDKVDLDGFTHAGVGYGNVTEEVLERAKKKKVSKAEKKRMVREAEKVKEEVTVCARCHSLRNYGQVKNYMAENLIPDFDFDRLISTRLMNPAGSGSSTVVVMVVDCVDFDGSFPRTAVKSLFKALEGMQENTKKGKKLPKLVLVATKVDLLPSQVSPTRLDRWVRHRASAGGAPKLSAVYLVSSRKDLGVRNVLSFVKDLAGPRGNVWVIGAQNAGKSTLINAFAKKEGAKVTKLTEAPVPGTTLGILRIAGILSAKAKMFDTPGLLHPYLLSMRLNREEQKMPPIGNDRAAELGTWKEREVKVSGSSWDVNCMDISIAGLGWFSLGIQGEATMKLWTYDGIEITLREPLVLDRAPSLEKPGFWLPKALSEAIGNQTKLEAQRRKKLEDEDTEYVGARTEISA*