Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0434050 | XP_024633777.1 | 94.819 | 193 | 8 | 1 | 1 | 193 | 1 | 191 | 9.20e-130 | 372 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0434050 | sp|Q9Y3E5|PTH2_HUMAN | 42.236 | 161 | 92 | 1 | 33 | 192 | 18 | 178 | 1.46e-39 | 136 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0434050 | G7J3G3 | 95.855 | 193 | 8 | 0 | 1 | 193 | 1 | 193 | 5.00e-127 | 365 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020630 | Msa0434050 | 0.814874 | 1.233506e-51 | -8.615850e-47 |
| Msa0027540 | Msa0434050 | 0.822856 | 1.893899e-53 | -8.615850e-47 |
| Msa0030730 | Msa0434050 | 0.808326 | 3.272961e-50 | -8.615850e-47 |
| Msa0038350 | Msa0434050 | -0.803361 | 3.616223e-49 | -8.615850e-47 |
| Msa0046820 | Msa0434050 | 0.800497 | 1.401861e-48 | -8.615850e-47 |
| Msa0073820 | Msa0434050 | 0.804686 | 1.917488e-49 | -8.615850e-47 |
| Msa0075310 | Msa0434050 | 0.818318 | 2.087037e-52 | -8.615850e-47 |
| Msa0091770 | Msa0434050 | 0.827584 | 1.443169e-54 | -8.615850e-47 |
| Msa0101060 | Msa0434050 | 0.803612 | 3.207738e-49 | -8.615850e-47 |
| Msa0105420 | Msa0434050 | 0.800836 | 1.195626e-48 | -8.615850e-47 |
| Msa0149500 | Msa0434050 | 0.832874 | 7.369333e-56 | -8.615850e-47 |
| Msa0159750 | Msa0434050 | 0.817123 | 3.882441e-52 | -8.615850e-47 |
| Msa0162050 | Msa0434050 | 0.805771 | 1.136402e-49 | -8.615850e-47 |
| Msa0168100 | Msa0434050 | 0.824154 | 9.411258e-54 | -8.615850e-47 |
| Msa0171780 | Msa0434050 | 0.804966 | 1.676177e-49 | -8.615850e-47 |
| Msa0183610 | Msa0434050 | 0.808015 | 3.811486e-50 | -8.615850e-47 |
| Msa0194570 | Msa0434050 | 0.806031 | 1.001956e-49 | -8.615850e-47 |
| Msa0207000 | Msa0434050 | 0.810646 | 1.039308e-50 | -8.615850e-47 |
| Msa0208390 | Msa0434050 | 0.822686 | 2.073890e-53 | -8.615850e-47 |
| Msa0371610 | Msa0434050 | 0.805020 | 1.633323e-49 | -8.615850e-47 |
| Msa0374070 | Msa0434050 | 0.800840 | 1.193506e-48 | -8.615850e-47 |
| Msa0376510 | Msa0434050 | 0.806680 | 7.312285e-50 | -8.615850e-47 |
| Msa0383680 | Msa0434050 | 0.890438 | 9.851332e-74 | -8.615850e-47 |
| Msa0413740 | Msa0434050 | 0.828675 | 7.881296e-55 | -8.615850e-47 |
| Msa0423250 | Msa0434050 | 0.803079 | 4.136664e-49 | -8.615850e-47 |
| Msa0425050 | Msa0434050 | 0.808062 | 3.724860e-50 | -8.615850e-47 |
| Msa0434050 | Msa0450050 | 0.800308 | 1.531484e-48 | -8.615850e-47 |
| Msa0434050 | Msa0467920 | -0.801424 | 9.063625e-49 | -8.615850e-47 |
| Msa0434050 | Msa0477830 | 0.805509 | 1.289835e-49 | -8.615850e-47 |
| Msa0434050 | Msa0505390 | 0.825888 | 3.665870e-54 | -8.615850e-47 |
| Msa0434050 | Msa0509970 | 0.803259 | 3.796383e-49 | -8.615850e-47 |
| Msa0434050 | Msa0516450 | 0.825458 | 4.637551e-54 | -8.615850e-47 |
| Msa0434050 | Msa0524050 | 0.817820 | 2.704029e-52 | -8.615850e-47 |
| Msa0434050 | Msa0524090 | 0.802148 | 6.436234e-49 | -8.615850e-47 |
| Msa0434050 | Msa0524120 | 0.827779 | 1.295567e-54 | -8.615850e-47 |
| Msa0434050 | Msa0546380 | 0.819992 | 8.680118e-53 | -8.615850e-47 |
| Msa0434050 | Msa0574170 | 0.821768 | 3.386397e-53 | -8.615850e-47 |
| Msa0434050 | Msa0575250 | 0.803689 | 3.091555e-49 | -8.615850e-47 |
| Msa0434050 | Msa0576420 | 0.817514 | 3.169664e-52 | -8.615850e-47 |
| Msa0434050 | Msa0577940 | -0.804760 | 1.850196e-49 | -8.615850e-47 |
| Msa0434050 | Msa0582110 | 0.801267 | 9.762031e-49 | -8.615850e-47 |
| Msa0434050 | Msa0604700 | 0.801004 | 1.104830e-48 | -8.615850e-47 |
| Msa0434050 | Msa0605620 | 0.809560 | 1.781399e-50 | -8.615850e-47 |
| Msa0434050 | Msa0619330 | 0.817978 | 2.491202e-52 | -8.615850e-47 |
| Msa0434050 | Msa0621890 | 0.809979 | 1.447942e-50 | -8.615850e-47 |
| Msa0434050 | Msa0624730 | 0.801352 | 9.375754e-49 | -8.615850e-47 |
| Msa0434050 | Msa0647000 | 0.814547 | 1.457435e-51 | -8.615850e-47 |
| Msa0434050 | Msa0657670 | 0.815475 | 9.070817e-52 | -8.615850e-47 |
| Msa0434050 | Msa0660880 | -0.807462 | 4.995546e-50 | -8.615850e-47 |
| Msa0434050 | Msa0674220 | 0.804652 | 1.949084e-49 | -8.615850e-47 |
| Msa0434050 | Msa0707780 | 0.803817 | 2.908541e-49 | -8.615850e-47 |
| Msa0434050 | Msa0714600 | 0.801042 | 1.084918e-48 | -8.615850e-47 |
| Msa0434050 | Msa0725480 | -0.812397 | 4.328293e-51 | -8.615850e-47 |
| Msa0434050 | Msa0730180 | 0.819112 | 1.377909e-52 | -8.615850e-47 |
| Msa0434050 | Msa0733000 | 0.805237 | 1.470761e-49 | -8.615850e-47 |
| Msa0434050 | Msa0756480 | 0.810080 | 1.376854e-50 | -8.615850e-47 |
| Msa0434050 | Msa0766100 | -0.805621 | 1.222153e-49 | -8.615850e-47 |
| Msa0434050 | Msa0770430 | 0.815249 | 1.018384e-51 | -8.615850e-47 |
| Msa0434050 | Msa0789570 | 0.816300 | 5.938983e-52 | -8.615850e-47 |
| Msa0434050 | Msa0792510 | 0.836364 | 9.773885e-57 | -8.615850e-47 |
| Msa0434050 | Msa0837990 | 0.813425 | 2.576713e-51 | -8.615850e-47 |
| Msa0434050 | Msa0845590 | -0.801366 | 9.314703e-49 | -8.615850e-47 |
| Msa0434050 | Msa0854570 | 0.801726 | 7.858679e-49 | -8.615850e-47 |
| Msa0434050 | Msa0890250 | 0.819441 | 1.159848e-52 | -8.615850e-47 |
| Msa0434050 | Msa0903730 | 0.809497 | 1.837564e-50 | -8.615850e-47 |
| Msa0434050 | Msa0907700 | 0.809610 | 1.737685e-50 | -8.615850e-47 |
| Msa0434050 | Msa0925160 | 0.809093 | 2.243901e-50 | -8.615850e-47 |
| Msa0434050 | Msa0937940 | 0.816982 | 4.176574e-52 | -8.615850e-47 |
| Msa0434050 | Msa0970050 | 0.800050 | 1.728639e-48 | -8.615850e-47 |
| Msa0434050 | Msa0973230 | 0.811599 | 6.459155e-51 | -8.615850e-47 |
| Msa0434050 | Msa0975080 | 0.804149 | 2.481032e-49 | -8.615850e-47 |
| Msa0434050 | Msa0977320 | 0.806081 | 9.778817e-50 | -8.615850e-47 |
| Msa0434050 | Msa0980440 | 0.819961 | 8.822677e-53 | -8.615850e-47 |
| Msa0434050 | Msa0981740 | 0.812261 | 4.634492e-51 | -8.615850e-47 |
| Msa0434050 | Msa1008490 | 0.819711 | 1.006329e-52 | -8.615850e-47 |
| Msa0434050 | Msa1009000 | 0.809152 | 2.179217e-50 | -8.615850e-47 |
| Msa0434050 | Msa1016670 | 0.815796 | 7.693614e-52 | -8.615850e-47 |
| Msa0434050 | Msa1033440 | -0.820259 | 7.540376e-53 | -8.615850e-47 |
| Msa0434050 | Msa1036390 | 0.844591 | 6.877672e-59 | -8.615850e-47 |
| Msa0434050 | Msa1038050 | 0.838728 | 2.420078e-57 | -8.615850e-47 |
| Msa0434050 | Msa1046610 | 0.805856 | 1.090915e-49 | -8.615850e-47 |
| Msa0434050 | Msa1072350 | 0.809971 | 1.453197e-50 | -8.615850e-47 |
| Msa0434050 | Msa1073110 | -0.823071 | 1.687159e-53 | -8.615850e-47 |
| Msa0434050 | Msa1073840 | 0.809904 | 1.502408e-50 | -8.615850e-47 |
| Msa0434050 | Msa1076680 | 0.838888 | 2.199813e-57 | -8.615850e-47 |
| Msa0434050 | Msa1080460 | 0.812675 | 3.762232e-51 | -8.615850e-47 |
| Msa0434050 | Msa1105290 | 0.801504 | 8.727962e-49 | -8.615850e-47 |
| Msa0434050 | Msa1118140 | 0.818262 | 2.148078e-52 | -8.615850e-47 |
| Msa0434050 | Msa1125780 | 0.804516 | 2.080692e-49 | -8.615850e-47 |
| Msa0434050 | Msa1125950 | 0.806002 | 1.016114e-49 | -8.615850e-47 |
| Msa0434050 | Msa1129560 | 0.806063 | 9.866668e-50 | -8.615850e-47 |
| Msa0434050 | Msa1129720 | 0.805050 | 1.609722e-49 | -8.615850e-47 |
| Msa0434050 | Msa1140010 | 0.825541 | 4.431070e-54 | -8.615850e-47 |
| Msa0434050 | Msa1159360 | 0.800496 | 1.402404e-48 | -8.615850e-47 |
| Msa0434050 | Msa1171340 | 0.803743 | 3.013799e-49 | -8.615850e-47 |
| Msa0434050 | Msa1171690 | 0.811123 | 8.195693e-51 | -8.615850e-47 |
| Msa0434050 | Msa1201990 | 0.811935 | 5.458221e-51 | -8.615850e-47 |
| Msa0434050 | Msa1220230 | 0.806858 | 6.708005e-50 | -8.615850e-47 |
| Msa0434050 | Msa1221200 | -0.824066 | 9.870679e-54 | -8.615850e-47 |
| Msa0434050 | Msa1226600 | 0.816735 | 4.744951e-52 | -8.615850e-47 |
| Msa0434050 | Msa1229690 | 0.812738 | 3.644869e-51 | -8.615850e-47 |
| Msa0434050 | Msa1254770 | 0.811163 | 8.032535e-51 | -8.615850e-47 |
| Msa0434050 | Msa1254800 | 0.806575 | 7.694502e-50 | -8.615850e-47 |
| Msa0434050 | Msa1254950 | 0.830233 | 3.295991e-55 | -8.615850e-47 |
| Msa0434050 | Msa1261470 | 0.816664 | 4.921535e-52 | -8.615850e-47 |
| Msa0434050 | Msa1262310 | 0.818628 | 1.775432e-52 | -8.615850e-47 |
| Msa0434050 | Msa1265960 | 0.805602 | 1.233508e-49 | -8.615850e-47 |
| Msa0434050 | Msa1295690 | 0.823783 | 1.150332e-53 | -8.615850e-47 |
| Msa0434050 | Msa1304180 | 0.819963 | 8.812581e-53 | -8.615850e-47 |
| Msa0434050 | Msa1310110 | 0.804118 | 2.518765e-49 | -8.615850e-47 |
| Msa0434050 | Msa1323190 | 0.809712 | 1.652204e-50 | -8.615850e-47 |
| Msa0434050 | Msa1326000 | 0.823184 | 1.588256e-53 | -8.615850e-47 |
| Msa0434050 | Msa1329990 | 0.821921 | 3.122872e-53 | -8.615850e-47 |
| Msa0434050 | Msa1358870 | -0.813600 | 2.358431e-51 | -8.615850e-47 |
| Msa0434050 | Msa1373950 | 0.830840 | 2.340998e-55 | -8.615850e-47 |
| Msa0434050 | Msa1385900 | 0.812382 | 4.361292e-51 | -8.615850e-47 |
| Msa0434050 | Msa1412520 | 0.800027 | 1.746851e-48 | -8.615850e-47 |
| Msa0434050 | Msa1418200 | 0.821324 | 4.289312e-53 | -8.615850e-47 |
| Msa0434050 | Msa1438270 | 0.800880 | 1.171102e-48 | -8.615850e-47 |
| Msa0434050 | Msa1456810 | 0.806131 | 9.547949e-50 | -8.615850e-47 |
| Msa0434050 | Msa1464560 | 0.834188 | 3.463380e-56 | -8.615850e-47 |
| Msa0257250 | Msa0434050 | 0.800228 | 1.590318e-48 | -8.615850e-47 |
| Msa0258670 | Msa0434050 | -0.804652 | 1.949084e-49 | -8.615850e-47 |
| Msa0265820 | Msa0434050 | 0.802674 | 5.015884e-49 | -8.615850e-47 |
| Msa0269360 | Msa0434050 | 0.823767 | 1.160320e-53 | -8.615850e-47 |
| Msa0298940 | Msa0434050 | 0.824003 | 1.021438e-53 | -8.615850e-47 |
| Msa0298970 | Msa0434050 | 0.819945 | 8.896016e-53 | -8.615850e-47 |
| Msa0342200 | Msa0434050 | 0.816675 | 4.892824e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0434050 | MtrunA17_Chr3g0140251 | 94.611 | 167 | 9 | 0 | 1 | 167 | 1 | 167 | 6.77e-110 | 311 |
| Msa0434050 | MtrunA17_Chr4g0038421 | 46.154 | 117 | 62 | 1 | 77 | 193 | 75 | 190 | 6.43e-32 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0434050 | AT4G32900.2 | 65.285 | 193 | 67 | 0 | 1 | 193 | 1 | 193 | 3.39e-91 | 265 |
| Msa0434050 | AT4G32900.3 | 63.030 | 165 | 61 | 0 | 1 | 165 | 1 | 165 | 6.76e-73 | 218 |
| Msa0434050 | AT4G32900.4 | 63.030 | 165 | 61 | 0 | 1 | 165 | 1 | 165 | 6.76e-73 | 218 |
| Msa0434050 | AT4G32900.1 | 60.714 | 140 | 55 | 0 | 1 | 140 | 1 | 140 | 1.06e-56 | 176 |
| Msa0434050 | AT5G16870.1 | 41.714 | 175 | 91 | 5 | 20 | 193 | 5 | 169 | 1.28e-35 | 123 |
| Msa0434050 | AT3G03010.3 | 47.863 | 117 | 60 | 1 | 77 | 193 | 64 | 179 | 1.15e-31 | 113 |
| Msa0434050 | AT3G03010.2 | 47.863 | 117 | 60 | 1 | 77 | 193 | 64 | 179 | 1.15e-31 | 113 |
| Msa0434050 | AT3G03010.1 | 47.863 | 117 | 60 | 1 | 77 | 193 | 64 | 179 | 1.15e-31 | 113 |
| Msa0434050 | AT3G03010.5 | 51.562 | 64 | 31 | 0 | 77 | 140 | 64 | 127 | 3.25e-17 | 75.1 |
| Msa0434050 | AT3G03010.4 | 51.562 | 64 | 31 | 0 | 77 | 140 | 64 | 127 | 3.25e-17 | 75.1 |
Find 59 sgRNAs with CRISPR-Local
Find 312 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCAAGTCACAACAATTT+TGG | 0.072538 | 3_2:-86798877 | None:intergenic |
| CGCTGATCAAGAACTTAAAA+TGG | 0.228407 | 3_2:+86797583 | Msa0434050:CDS |
| TTCAGGGCCAAAAGCAATTC+TGG | 0.238209 | 3_2:+86799713 | Msa0434050:intron |
| TCTTTCCAGATTTCATCTTT+AGG | 0.306077 | 3_2:-86798184 | None:intergenic |
| TGTATCAGGTTCTGGTTGTT+AGG | 0.313277 | 3_2:+86798156 | Msa0434050:intron |
| GTTAACCTATGGTCTGTCTT+CGG | 0.322394 | 3_2:+86799817 | Msa0434050:three_prime_UTR |
| TTAACCTATGGTCTGTCTTC+GGG | 0.327219 | 3_2:+86799818 | Msa0434050:three_prime_UTR |
| TGCTATGTTCTTATCCGGTT+TGG | 0.334810 | 3_2:-86795713 | None:intergenic |
| ACCGAATCCAGAATTGCTTT+TGG | 0.356047 | 3_2:-86799720 | None:intergenic |
| AGGAAGCAGCTGAGGGTATT+GGG | 0.357565 | 3_2:+86799007 | Msa0434050:CDS |
| CTTGTCATTGGTTTCATTTG+TGG | 0.367500 | 3_2:+86797461 | Msa0434050:CDS |
| CAAAAGGGAGAATGGTTATC+AGG | 0.368060 | 3_2:+86797407 | Msa0434050:CDS |
| TTCATTCCAGGTCTTGTCAT+TGG | 0.373028 | 3_2:+86797449 | Msa0434050:CDS |
| AAGGAAGCAGCTGAGGGTAT+TGG | 0.388038 | 3_2:+86799006 | Msa0434050:CDS |
| CAAGACCTAAAGATGAAATC+TGG | 0.399487 | 3_2:+86798179 | Msa0434050:CDS |
| TCAACTGCTATGTTCTTATC+CGG | 0.400726 | 3_2:-86795718 | None:intergenic |
| GCAATTCTGGATTCGGTGAC+TGG | 0.400755 | 3_2:+86799726 | Msa0434050:CDS |
| AAGCCAGAGAATTTCATTCC+AGG | 0.410494 | 3_2:+86797437 | Msa0434050:CDS |
| CAACTCTCTGTCTCAACTAA+TGG | 0.415558 | 3_2:+86797560 | Msa0434050:CDS |
| TCAAAGACTGTTCTTGCTGT+TGG | 0.433145 | 3_2:+86799553 | Msa0434050:CDS |
| GAAACAACAAGAAAAGCAAA+AGG | 0.436943 | 3_2:+86797391 | Msa0434050:intron |
| GCCAAAAGCAATTCTGGATT+CGG | 0.450419 | 3_2:+86799719 | Msa0434050:CDS |
| TTGGATAAGTGATTTCTAGT+TGG | 0.453255 | 3_2:-86797506 | None:intergenic |
| AGCCAGGCTTTGTTAACCTA+TGG | 0.473264 | 3_2:+86799806 | Msa0434050:three_prime_UTR |
| CCCAATGTCTTAAAAGAGAC+CGG | 0.478499 | 3_2:-86798839 | None:intergenic |
| AGACCTGGAATGAAATTCTC+TGG | 0.481100 | 3_2:-86797440 | None:intergenic |
| CAACCTAAAATCCACCGAAC+AGG | 0.481970 | 3_2:+86797216 | Msa0434050:CDS |
| GTTATTGAAGAATACCTGTT+CGG | 0.492171 | 3_2:-86797230 | None:intergenic |
| TGTCATCTTCAGGTTTCAGC+AGG | 0.498407 | 3_2:+86799529 | Msa0434050:intron |
| CATCTGCTTACATTTCCTGT+TGG | 0.505133 | 3_2:-86798902 | None:intergenic |
| GGATTCGGTGACTGGAAGGT+TGG | 0.507459 | 3_2:+86799734 | Msa0434050:CDS |
| TGTGACTTGCAAGAACCAAC+AGG | 0.509191 | 3_2:+86798887 | Msa0434050:CDS |
| AAGAAAAGCAAAAGGGAGAA+TGG | 0.509470 | 3_2:+86797399 | Msa0434050:CDS |
| GACCATAGGTTAACAAAGCC+TGG | 0.510702 | 3_2:-86799808 | None:intergenic |
| CTGGCTGATTTATCACGCTA+TGG | 0.514136 | 3_2:-86799789 | None:intergenic |
| ACTGTTCTTGCTGTTGGACC+TGG | 0.520353 | 3_2:+86799559 | Msa0434050:CDS |
| GCATCGGAGACAACAAAAGT+AGG | 0.520501 | 3_2:-86799033 | None:intergenic |
| CCCGCAAAACAAACAAATTG+AGG | 0.521145 | 3_2:-86795677 | None:intergenic |
| AAACAACAAGAAAAGCAAAA+GGG | 0.522970 | 3_2:+86797392 | Msa0434050:CDS |
| TACCTGTGTTCGTCCTGCAT+CGG | 0.526970 | 3_2:-86799049 | None:intergenic |
| TTCTGGATTCGGTGACTGGA+AGG | 0.541644 | 3_2:+86799730 | Msa0434050:CDS |
| TCAAAATTAATTTCAACGCA+AGG | 0.544145 | 3_2:+86795749 | Msa0434050:five_prime_UTR |
| GCATGCTTCAGTGACCAAAC+CGG | 0.551324 | 3_2:+86795699 | Msa0434050:five_prime_UTR |
| TGTATGGCAGATGCTGCCAC+CGG | 0.557778 | 3_2:+86798356 | Msa0434050:intron |
| AACATGTTGTTACTTATACA+AGG | 0.564493 | 3_2:+86799922 | Msa0434050:three_prime_UTR |
| ATGAAACCAATGACAAGACC+TGG | 0.577308 | 3_2:-86797455 | None:intergenic |
| TAAGCTCAAGGAAGCAGCTG+AGG | 0.585263 | 3_2:+86798999 | Msa0434050:CDS |
| ATTGAAGAATACCTGTTCGG+TGG | 0.590827 | 3_2:-86797227 | None:intergenic |
| TTTGATCAGGAATAAGCTCA+AGG | 0.591705 | 3_2:+86798987 | Msa0434050:intron |
| CATCGGAGACAACAAAAGTA+GGG | 0.602209 | 3_2:-86799032 | None:intergenic |
| CTCCGATGCAGGACGAACAC+AGG | 0.606811 | 3_2:+86799047 | Msa0434050:CDS |
| CATTAGTTGAGACAGAGAGT+TGG | 0.619274 | 3_2:-86797559 | None:intergenic |
| CGTTAATTCAGCATACATGC+CGG | 0.627029 | 3_2:-86798375 | None:intergenic |
| CATAGCGTGATAAATCAGCC+AGG | 0.628311 | 3_2:+86799790 | Msa0434050:three_prime_UTR |
| AAGCTCAAGGAAGCAGCTGA+GGG | 0.642971 | 3_2:+86799000 | Msa0434050:CDS |
| TGTGCCCGAAGACAGACCAT+AGG | 0.675286 | 3_2:-86799822 | None:intergenic |
| TAATTCAGCATACATGCCGG+TGG | 0.683317 | 3_2:-86798372 | None:intergenic |
| TGTATGCTGAATTAACGCGA+AGG | 0.695292 | 3_2:+86798381 | Msa0434050:CDS |
| TTAAGACATTGGGAACAGTG+CGG | 0.729788 | 3_2:+86798849 | Msa0434050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAATAAGTAAATTTAATTT+AGG | + | chr3_2:86795825-86795844 | Msa0434050:intron | 10.0% |
| !!! | TTTAATTTAGGTTTAAAATA+TGG | + | chr3_2:86795837-86795856 | Msa0434050:intron | 10.0% |
| !!! | TTAATTTAGGTTTAAAATAT+GGG | + | chr3_2:86795838-86795857 | Msa0434050:intron | 10.0% |
| !!! | TACTTTGTTTAATATTTTAA+GGG | - | chr3_2:86796793-86796812 | None:intergenic | 10.0% |
| !!! | ATACTTTGTTTAATATTTTA+AGG | - | chr3_2:86796794-86796813 | None:intergenic | 10.0% |
| !! | ATGAATGAAAATATTAAAAT+TGG | + | chr3_2:86797133-86797152 | Msa0434050:intron | 10.0% |
| !! | TACTATTCATTAAAATAATT+GGG | - | chr3_2:86797352-86797371 | None:intergenic | 10.0% |
| !! | ATACTATTCATTAAAATAAT+TGG | - | chr3_2:86797353-86797372 | None:intergenic | 10.0% |
| !! | TTCAACTTATTTAAAAAAAA+TGG | - | chr3_2:86797967-86797986 | None:intergenic | 10.0% |
| !!! | AATTTTATTCTTCTTTTACT+TGG | - | chr3_2:86796833-86796852 | None:intergenic | 15.0% |
| !! | AAGTAAAAGAAGAATAAAAT+TGG | + | chr3_2:86796832-86796851 | Msa0434050:intron | 15.0% |
| !!! | TTTGAAATTTTGATACATTT+AGG | + | chr3_2:86796970-86796989 | Msa0434050:intron | 15.0% |
| !!! | TTGAAATTTTGATACATTTA+GGG | + | chr3_2:86796971-86796990 | Msa0434050:intron | 15.0% |
| !!! | GTATTTTATAAAATTGTTAC+CGG | - | chr3_2:86797733-86797752 | None:intergenic | 15.0% |
| !! | TCTAGATTAAAAAAATTAGC+AGG | + | chr3_2:86796091-86796110 | Msa0434050:intron | 20.0% |
| !!! | TGTTTATGGTCTATTTTAAA+TGG | + | chr3_2:86796398-86796417 | Msa0434050:intron | 20.0% |
| !!! | TCATTCTCTTTAAGAATAAA+TGG | - | chr3_2:86796458-86796477 | None:intergenic | 20.0% |
| !! | ATTTATTCTTAAAGAGAATG+AGG | + | chr3_2:86796457-86796476 | Msa0434050:intron | 20.0% |
| !!! | TAATAGAGTAATGATCATTT+TGG | - | chr3_2:86797029-86797048 | None:intergenic | 20.0% |
| !! | ATAAATATAGGACATTAAAC+AGG | + | chr3_2:86797067-86797086 | Msa0434050:intron | 20.0% |
| !! | AAAATATTAAAATTGGTGTG+AGG | + | chr3_2:86797140-86797159 | Msa0434050:intron | 20.0% |
| !! | AAATATTAAAATTGGTGTGA+GGG | + | chr3_2:86797141-86797160 | Msa0434050:intron | 20.0% |
| !!! | TCAATTCAATTCAATGTTTT+AGG | + | chr3_2:86797318-86797337 | Msa0434050:intron | 20.0% |
| !!! | CAATTCAATTCAATGTTTTA+GGG | + | chr3_2:86797319-86797338 | Msa0434050:intron | 20.0% |
| !! | ATTCATTAAAATAATTGGGT+TGG | - | chr3_2:86797348-86797367 | None:intergenic | 20.0% |
| !! | AACAACAAATGTTTATTCAA+AGG | - | chr3_2:86797865-86797884 | None:intergenic | 20.0% |
| !!! | TCTATTTTACAAATGTTATG+AGG | + | chr3_2:86798045-86798064 | Msa0434050:intron | 20.0% |
| !! | AAATGTAAAATGTTTGTATC+AGG | + | chr3_2:86798142-86798161 | Msa0434050:intron | 20.0% |
| !! | AAAAACATATATCCATGTAA+AGG | - | chr3_2:86798336-86798355 | None:intergenic | 20.0% |
| !!! | ATGGATATATGTTTTTTGTA+TGG | + | chr3_2:86798340-86798359 | Msa0434050:intron | 20.0% |
| !!! | CTATAACACAATCTTTTTAA+CGG | - | chr3_2:86798471-86798490 | None:intergenic | 20.0% |
| !!! | CAAATTTTGTACAGAAAAAA+GGG | - | chr3_2:86798569-86798588 | None:intergenic | 20.0% |
| !! | AATAATATCGAATTTCATTC+AGG | + | chr3_2:86798748-86798767 | Msa0434050:intron | 20.0% |
| !!! | CAGTATTGTAAATATACTTT+TGG | + | chr3_2:86798937-86798956 | Msa0434050:intron | 20.0% |
| ! | TCAAAATTAATTTCAACGCA+AGG | + | chr3_2:86795749-86795768 | Msa0434050:five_prime_UTR | 25.0% |
| ! | TAAAAAAGAGGTCCATATTA+GGG | - | chr3_2:86796764-86796783 | None:intergenic | 25.0% |
| ! | TTAAAAAAGAGGTCCATATT+AGG | - | chr3_2:86796763-86796782 | None:intergenic | 25.0% |
| !!! | TAATATGGACCTCTTTTTTA+AGG | + | chr3_2:86795867-86795886 | Msa0434050:intron | 25.0% |
| !!! | AATATGGACCTCTTTTTTAA+GGG | + | chr3_2:86795868-86795887 | Msa0434050:intron | 25.0% |
| ! | AGTGATAGTAACATGTAAAT+TGG | - | chr3_2:86795945-86795964 | None:intergenic | 25.0% |
| ! | CCAGAATAAAACAAAATCAA+TGG | - | chr3_2:86796261-86796280 | None:intergenic | 25.0% |
| !!! | CCATTGATTTTGTTTTATTC+TGG | + | chr3_2:86796258-86796277 | Msa0434050:intron | 25.0% |
| !!! | AATATGGACCTCTTTTTTAA+GGG | - | chr3_2:86795868-86795887 | None:intergenic | 25.0% |
| !!! | TAATATGGACCTCTTTTTTA+AGG | - | chr3_2:86795867-86795886 | None:intergenic | 25.0% |
| ! | ATTTAATTAGCGTACTCTAT+CGG | + | chr3_2:86796860-86796879 | Msa0434050:intron | 25.0% |
| ! | TTGTACTTTGACTCTTATTA+TGG | - | chr3_2:86797099-86797118 | None:intergenic | 25.0% |
| ! | TAATAATACCCATTTGGATT+TGG | - | chr3_2:86797265-86797284 | None:intergenic | 25.0% |
| !! | ATTTTCAGAATTAAGCAGAA+AGG | - | chr3_2:86797292-86797311 | None:intergenic | 25.0% |
| ! | AAACAACAAGAAAAGCAAAA+GGG | + | chr3_2:86797392-86797411 | Msa0434050:CDS | 25.0% |
| ! | TCTTTGCATTTAATTAAAGC+CGG | - | chr3_2:86797641-86797660 | None:intergenic | 25.0% |
| ! | ATAGTTTACAACAGAATAAC+AGG | - | chr3_2:86797681-86797700 | None:intergenic | 25.0% |
| ! | TTTCATGTATTGAGTTCATA+TGG | + | chr3_2:86797819-86797838 | Msa0434050:intron | 25.0% |
| !! | ATTTTACAAATGTTATGAGG+AGG | + | chr3_2:86798048-86798067 | Msa0434050:intron | 25.0% |
| !! | TTTTACAAATGTTATGAGGA+GGG | + | chr3_2:86798049-86798068 | Msa0434050:intron | 25.0% |
| ! | ATAAAGAACAGATCTAGAAA+CGG | - | chr3_2:86798253-86798272 | None:intergenic | 25.0% |
| ! | TGTCTATTACAAACTCTATT+AGG | + | chr3_2:86798279-86798298 | Msa0434050:intron | 25.0% |
| ! | GAAAAAAGGGATTATATGAA+TGG | - | chr3_2:86798556-86798575 | None:intergenic | 25.0% |
| !! | GCAAATTTTGTACAGAAAAA+AGG | - | chr3_2:86798570-86798589 | None:intergenic | 25.0% |
| !!! | TACAAAATTTGCTATAGTGA+AGG | + | chr3_2:86798578-86798597 | Msa0434050:intron | 25.0% |
| !!! | TTTTTGGTTGTTATCCTTAT+TGG | + | chr3_2:86798779-86798798 | Msa0434050:intron | 25.0% |
| ! | GGTAATAATGCTTTGATATA+TGG | + | chr3_2:86799068-86799087 | Msa0434050:intron | 25.0% |
| !! | CTATGTGATAAGAGTTTTTA+AGG | - | chr3_2:86799116-86799135 | None:intergenic | 25.0% |
| !!! | GAAATTAGTTGGTTAGTTTT+GGG | + | chr3_2:86799375-86799394 | Msa0434050:intron | 25.0% |
| ! | TGAATATCCTGTTAAAAATC+TGG | - | chr3_2:86799455-86799474 | None:intergenic | 25.0% |
| ! | TCAAAATACTTATGTATGAC+AGG | + | chr3_2:86799663-86799682 | Msa0434050:intron | 25.0% |
| !!! | AATTTTAGTATCTGCTAACT+AGG | + | chr3_2:86799861-86799880 | Msa0434050:three_prime_UTR | 25.0% |
| !!! | ATTTTAGTATCTGCTAACTA+GGG | + | chr3_2:86799862-86799881 | Msa0434050:three_prime_UTR | 25.0% |
| !! | AACATGTTGTTACTTATACA+AGG | + | chr3_2:86799922-86799941 | Msa0434050:three_prime_UTR | 25.0% |
| !!! | TCCTCAATTTGTTTGTTTTG+CGG | + | chr3_2:86795676-86795695 | Msa0434050:five_prime_UTR | 30.0% |
| AAAAAAGAGGTCCATATTAG+GGG | - | chr3_2:86796765-86796784 | None:intergenic | 30.0% | |
| TACAACGTGAAATGAAGAAA+TGG | - | chr3_2:86795984-86796003 | None:intergenic | 30.0% | |
| !!! | GAAACTGTTTTTAACAACAG+GGG | - | chr3_2:86796018-86796037 | None:intergenic | 30.0% |
| !!! | GGAAACTGTTTTTAACAACA+GGG | - | chr3_2:86796019-86796038 | None:intergenic | 30.0% |
| !!! | AGGAAACTGTTTTTAACAAC+AGG | - | chr3_2:86796020-86796039 | None:intergenic | 30.0% |
| AGAAATCAATGAAAGAAAGG+AGG | - | chr3_2:86796040-86796059 | None:intergenic | 30.0% | |
| CGAAGAAATCAATGAAAGAA+AGG | - | chr3_2:86796043-86796062 | None:intergenic | 30.0% | |
| AACAAGACGTTTCATGTTTA+TGG | + | chr3_2:86796384-86796403 | Msa0434050:intron | 30.0% | |
| ! | TTTAAATGGTAGCTTTGCAA+TGG | + | chr3_2:86796412-86796431 | Msa0434050:intron | 30.0% |
| TTCTTAAAGAGAATGAGGAT+TGG | + | chr3_2:86796462-86796481 | Msa0434050:intron | 30.0% | |
| TCTTAAAGAGAATGAGGATT+GGG | + | chr3_2:86796463-86796482 | Msa0434050:intron | 30.0% | |
| CAATTTGTCATCCAAAATGA+TGG | - | chr3_2:86796491-86796510 | None:intergenic | 30.0% | |
| AAGAATGATGAATGAGAATG+AGG | + | chr3_2:86796579-86796598 | Msa0434050:intron | 30.0% | |
| GTGTACAATATGAAATGAGT+GGG | + | chr3_2:86796678-86796697 | Msa0434050:intron | 30.0% | |
| TGTACAATATGAAATGAGTG+GGG | + | chr3_2:86796679-86796698 | Msa0434050:intron | 30.0% | |
| AAAAAAGAGGTCCATATTAG+AGG | + | chr3_2:86796765-86796784 | Msa0434050:intron | 30.0% | |
| GTTATTGAAGAATACCTGTT+CGG | - | chr3_2:86797233-86797252 | None:intergenic | 30.0% | |
| AAACATGTTCCAAATCCAAA+TGG | + | chr3_2:86797253-86797272 | Msa0434050:intron | 30.0% | |
| AACATGTTCCAAATCCAAAT+GGG | + | chr3_2:86797254-86797273 | Msa0434050:intron | 30.0% | |
| GGCTAATAATAATACCCATT+TGG | - | chr3_2:86797271-86797290 | None:intergenic | 30.0% | |
| GAAACAACAAGAAAAGCAAA+AGG | + | chr3_2:86797391-86797410 | Msa0434050:intron | 30.0% | |
| !! | TTGGATAAGTGATTTCTAGT+TGG | - | chr3_2:86797509-86797528 | None:intergenic | 30.0% |
| TTCATCACTTTCTCATACTA+TGG | + | chr3_2:86797615-86797634 | Msa0434050:intron | 30.0% | |
| TAAATGAGCCAATAACAGAT+TGG | - | chr3_2:86797774-86797793 | None:intergenic | 30.0% | |
| !!! | TCAGTAGTTTTAGCTCTAAT+AGG | - | chr3_2:86797891-86797910 | None:intergenic | 30.0% |
| TTTACAAATGTTATGAGGAG+GGG | + | chr3_2:86798050-86798069 | Msa0434050:intron | 30.0% | |
| AAAATGTTTGTATCAGGTTC+TGG | + | chr3_2:86798148-86798167 | Msa0434050:intron | 30.0% | |
| TCTTTCCAGATTTCATCTTT+AGG | - | chr3_2:86798187-86798206 | None:intergenic | 30.0% | |
| AGGCTAGTATACTAAAAAGA+TGG | - | chr3_2:86798310-86798329 | None:intergenic | 30.0% | |
| ! | TTTTATCATGAAACCGATGT+TGG | - | chr3_2:86798425-86798444 | None:intergenic | 30.0% |
| ! | TTCCTTTACATCTAAAGCAA+AGG | + | chr3_2:86798608-86798627 | Msa0434050:intron | 30.0% |
| !!! | CATTCAGGCAACATATTTTT+TGG | + | chr3_2:86798763-86798782 | Msa0434050:intron | 30.0% |
| ! | TTGCAAGTCACAACAATTTT+GGG | - | chr3_2:86798879-86798898 | None:intergenic | 30.0% |
| TAATGCTTTGATATATGGCT+AGG | + | chr3_2:86799073-86799092 | Msa0434050:intron | 30.0% | |
| !!! | GACTATTTTTGTCTTCTGTT+AGG | + | chr3_2:86799229-86799248 | Msa0434050:intron | 30.0% |
| TAGGAAAGCTTACATCAAAT+AGG | + | chr3_2:86799265-86799284 | Msa0434050:intron | 30.0% | |
| ATTTGCAGCAAATTAACCAA+CGG | - | chr3_2:86799334-86799353 | None:intergenic | 30.0% | |
| !! | GTTAATTTGCTGCAAATAGA+GGG | + | chr3_2:86799337-86799356 | Msa0434050:intron | 30.0% |
| !! | TTAATTTGCTGCAAATAGAG+GGG | + | chr3_2:86799338-86799357 | Msa0434050:intron | 30.0% |
| !!! | GGAAATTAGTTGGTTAGTTT+TGG | + | chr3_2:86799374-86799393 | Msa0434050:intron | 30.0% |
| CTGTTAAAAATCTGGATCAA+TGG | - | chr3_2:86799447-86799466 | None:intergenic | 30.0% | |
| ! | CATTGATCCAGATTTTTAAC+AGG | + | chr3_2:86799445-86799464 | Msa0434050:intron | 30.0% |
| ! | TTTTAGTATCTGCTAACTAG+GGG | + | chr3_2:86799863-86799882 | Msa0434050:three_prime_UTR | 30.0% |
| !! | TCAATAGAGCACTCTATTTT+TGG | + | chr3_2:86799886-86799905 | Msa0434050:three_prime_UTR | 30.0% |
| !!! | CCTCAATTTGTTTGTTTTGC+GGG | + | chr3_2:86795677-86795696 | Msa0434050:five_prime_UTR | 35.0% |
| TCAACTGCTATGTTCTTATC+CGG | - | chr3_2:86795721-86795740 | None:intergenic | 35.0% | |
| ACGTGAAATGAAGAAATGGA+GGG | - | chr3_2:86795980-86795999 | None:intergenic | 35.0% | |
| AACGTGAAATGAAGAAATGG+AGG | - | chr3_2:86795981-86796000 | None:intergenic | 35.0% | |
| TTCGTTAAAAACCAGAGAGA+TGG | + | chr3_2:86796059-86796078 | Msa0434050:intron | 35.0% | |
| GATATCTTAAACCATCTCTC+TGG | - | chr3_2:86796073-86796092 | None:intergenic | 35.0% | |
| GAGAAAATGTCATAAACAGG+TGG | - | chr3_2:86796195-86796214 | None:intergenic | 35.0% | |
| GCAGAGAAAATGTCATAAAC+AGG | - | chr3_2:86796198-86796217 | None:intergenic | 35.0% | |
| !!! | AATCAATGGCTTGTTTTCTC+TGG | - | chr3_2:86796247-86796266 | None:intergenic | 35.0% |
| TTTATTCTGGTCTACGAACT+CGG | + | chr3_2:86796271-86796290 | Msa0434050:intron | 35.0% | |
| AATGGAATCTCTACTTCAGA+GGG | + | chr3_2:86796430-86796449 | Msa0434050:intron | 35.0% | |
| GCAAAAACTCCCCAATAAAA+AGG | + | chr3_2:86796646-86796665 | Msa0434050:intron | 35.0% | |
| AAAACTCCCCAATAAAAAGG+AGG | + | chr3_2:86796649-86796668 | Msa0434050:intron | 35.0% | |
| GGTGTACAATATGAAATGAG+TGG | + | chr3_2:86796677-86796696 | Msa0434050:intron | 35.0% | |
| !! | TTTTAAGGGAGCCTCTAATA+TGG | - | chr3_2:86796779-86796798 | None:intergenic | 35.0% |
| AAGAAAAGCAAAAGGGAGAA+TGG | + | chr3_2:86797399-86797418 | Msa0434050:CDS | 35.0% | |
| !! | CTTGTCATTGGTTTCATTTG+TGG | + | chr3_2:86797461-86797480 | Msa0434050:CDS | 35.0% |
| ! | GGTGGATGAGAATATTTTGT+TGG | - | chr3_2:86797528-86797547 | None:intergenic | 35.0% |
| CGCTGATCAAGAACTTAAAA+TGG | + | chr3_2:86797583-86797602 | Msa0434050:CDS | 35.0% | |
| AGTTTCTGCCAATCTGTTAT+TGG | + | chr3_2:86797763-86797782 | Msa0434050:intron | 35.0% | |
| !! | CTGTTATTGGCTCATTTAGA+AGG | + | chr3_2:86797776-86797795 | Msa0434050:intron | 35.0% |
| TTACAAATGTTATGAGGAGG+GGG | + | chr3_2:86798051-86798070 | Msa0434050:intron | 35.0% | |
| TCCAGTAAAAGAAGTTCGTA+GGG | - | chr3_2:86798101-86798120 | None:intergenic | 35.0% | |
| ATCCAGTAAAAGAAGTTCGT+AGG | - | chr3_2:86798102-86798121 | None:intergenic | 35.0% | |
| CAAGACCTAAAGATGAAATC+TGG | + | chr3_2:86798179-86798198 | Msa0434050:CDS | 35.0% | |
| ! | ATATATCCATGTAAAGGCAC+AGG | - | chr3_2:86798330-86798349 | None:intergenic | 35.0% |
| ! | TGCCTTTGCTTTAGATGTAA+AGG | - | chr3_2:86798613-86798632 | None:intergenic | 35.0% |
| GGAGCTTATTATAGCCAATA+AGG | - | chr3_2:86798796-86798815 | None:intergenic | 35.0% | |
| !! | ACTGCAAAAGTATTCAGCAA+TGG | - | chr3_2:86798817-86798836 | None:intergenic | 35.0% |
| ! | CTGAATACTTTTGCAGTAAC+CGG | + | chr3_2:86798820-86798839 | Msa0434050:intron | 35.0% |
| ! | CTTGCAAGTCACAACAATTT+TGG | - | chr3_2:86798880-86798899 | None:intergenic | 35.0% |
| CTTATTCCTGATCAAAATCC+AGG | - | chr3_2:86798983-86799002 | None:intergenic | 35.0% | |
| TTTGATCAGGAATAAGCTCA+AGG | + | chr3_2:86798987-86799006 | Msa0434050:intron | 35.0% | |
| TTCTTAGGAATGCATGTTGA+AGG | + | chr3_2:86799176-86799195 | Msa0434050:intron | 35.0% | |
| TCTTAGGAATGCATGTTGAA+GGG | + | chr3_2:86799177-86799196 | Msa0434050:intron | 35.0% | |
| ! | AATAGTCTCTAAAGAGTGTG+AGG | - | chr3_2:86799216-86799235 | None:intergenic | 35.0% |
| GATGTAAGCTTTCCTAGTTA+AGG | - | chr3_2:86799261-86799280 | None:intergenic | 35.0% | |
| !! | GGTTAATTTGCTGCAAATAG+AGG | + | chr3_2:86799336-86799355 | Msa0434050:intron | 35.0% |
| CGAAAGAAAGGGAAATTAGT+TGG | + | chr3_2:86799364-86799383 | Msa0434050:intron | 35.0% | |
| !!! | ATTAGTTGGTTAGTTTTGGG+TGG | + | chr3_2:86799378-86799397 | Msa0434050:intron | 35.0% |
| !!! | TTAGTTGGTTAGTTTTGGGT+GGG | + | chr3_2:86799379-86799398 | Msa0434050:intron | 35.0% |
| AATCTGGATCAATGGAACAT+TGG | - | chr3_2:86799439-86799458 | None:intergenic | 35.0% | |
| !! | GTTCTTGACTTGCTTTATGT+TGG | + | chr3_2:86799600-86799619 | Msa0434050:intron | 35.0% |
| CCCGCAAAACAAACAAATTG+AGG | - | chr3_2:86795680-86795699 | None:intergenic | 40.0% | |
| TGCTATGTTCTTATCCGGTT+TGG | - | chr3_2:86795716-86795735 | None:intergenic | 40.0% | |
| CCTCACTACTCAAATTTCCT+GGG | - | chr3_2:86795789-86795808 | None:intergenic | 40.0% | |
| CCAGGAAATTTGAGTAGTGA+GGG | + | chr3_2:86795787-86795806 | Msa0434050:intron | 40.0% | |
| AAATATGGGAGCCCCTAATA+TGG | + | chr3_2:86795852-86795871 | Msa0434050:intron | 40.0% | |
| GGTCAATTTGTGAGGATCAT+GGG | - | chr3_2:86795898-86795917 | None:intergenic | 40.0% | |
| CATGATCCTCACAAATTGAC+CGG | + | chr3_2:86795897-86795916 | Msa0434050:intron | 40.0% | |
| GAAGAAATGGAGGGCAAAAA+TGG | - | chr3_2:86795971-86795990 | None:intergenic | 40.0% | |
| !!! | ACTGTTTTTAACAACAGGGG+AGG | - | chr3_2:86796015-86796034 | None:intergenic | 40.0% |
| !!! | ATTAGCAGGTTTTGAACCCT+TGG | + | chr3_2:86796105-86796124 | Msa0434050:intron | 40.0% |
| ATGTCATAAACAGGTGGTTC+CGG | - | chr3_2:86796189-86796208 | None:intergenic | 40.0% | |
| ! | TTTTCTCTGCATAACTCCCA+AGG | + | chr3_2:86796208-86796227 | Msa0434050:intron | 40.0% |
| CAATGGAATCTCTACTTCAG+AGG | + | chr3_2:86796429-86796448 | Msa0434050:intron | 40.0% | |
| ! | AGGATTGGGAACCATCATTT+TGG | + | chr3_2:86796477-86796496 | Msa0434050:intron | 40.0% |
| ! | TGATTTGTACCCACTATTGC+CGG | + | chr3_2:86796712-86796731 | Msa0434050:intron | 40.0% |
| ACAAATTGACCGGCAATAGT+GGG | - | chr3_2:86795907-86795926 | None:intergenic | 40.0% | |
| !!! | CTTTTTTAAGGGTCCAACCA+TGG | - | chr3_2:86796752-86796771 | None:intergenic | 40.0% |
| TGGTTGGACCCTTAAAAAAG+AGG | + | chr3_2:86796752-86796771 | Msa0434050:intron | 40.0% | |
| TCTTTGTAGCTGCACATCAT+TGG | - | chr3_2:86796910-86796929 | None:intergenic | 40.0% | |
| !! | ATACCTGTTCGGTGGATTTT+AGG | - | chr3_2:86797222-86797241 | None:intergenic | 40.0% |
| ATTGAAGAATACCTGTTCGG+TGG | - | chr3_2:86797230-86797249 | None:intergenic | 40.0% | |
| CAAAAGGGAGAATGGTTATC+AGG | + | chr3_2:86797407-86797426 | Msa0434050:CDS | 40.0% | |
| AAGCCAGAGAATTTCATTCC+AGG | + | chr3_2:86797437-86797456 | Msa0434050:CDS | 40.0% | |
| AGACCTGGAATGAAATTCTC+TGG | - | chr3_2:86797443-86797462 | None:intergenic | 40.0% | |
| ! | TTCATTCCAGGTCTTGTCAT+TGG | + | chr3_2:86797449-86797468 | Msa0434050:CDS | 40.0% |
| ATGAAACCAATGACAAGACC+TGG | - | chr3_2:86797458-86797477 | None:intergenic | 40.0% | |
| !!! | AGAGAGTTGGTTTTGAAGCT+TGG | - | chr3_2:86797549-86797568 | None:intergenic | 40.0% |
| CATTAGTTGAGACAGAGAGT+TGG | - | chr3_2:86797562-86797581 | None:intergenic | 40.0% | |
| CAACTCTCTGTCTCAACTAA+TGG | + | chr3_2:86797560-86797579 | Msa0434050:CDS | 40.0% | |
| TCACTTTCTCATACTATGGC+CGG | + | chr3_2:86797619-86797638 | Msa0434050:intron | 40.0% | |
| TACAAATGTTATGAGGAGGG+GGG | + | chr3_2:86798052-86798071 | Msa0434050:intron | 40.0% | |
| ! | TCCCTACGAACTTCTTTTAC+TGG | + | chr3_2:86798097-86798116 | Msa0434050:intron | 40.0% |
| ! | TGTATCAGGTTCTGGTTGTT+AGG | + | chr3_2:86798156-86798175 | Msa0434050:intron | 40.0% |
| CGTTAATTCAGCATACATGC+CGG | - | chr3_2:86798378-86798397 | None:intergenic | 40.0% | |
| TGTATGCTGAATTAACGCGA+AGG | + | chr3_2:86798381-86798400 | Msa0434050:CDS | 40.0% | |
| ATCATGAAACCGATGTTGGT+AGG | - | chr3_2:86798421-86798440 | None:intergenic | 40.0% | |
| ! | TTGTAAGCACTGTGTGACAA+CGG | + | chr3_2:86798511-86798530 | Msa0434050:intron | 40.0% |
| !!! | ACCGGTCTCTTTTAAGACAT+TGG | + | chr3_2:86798838-86798857 | Msa0434050:CDS | 40.0% |
| CCCAATGTCTTAAAAGAGAC+CGG | - | chr3_2:86798842-86798861 | None:intergenic | 40.0% | |
| !!! | CCGGTCTCTTTTAAGACATT+GGG | + | chr3_2:86798839-86798858 | Msa0434050:CDS | 40.0% |
| TTAAGACATTGGGAACAGTG+CGG | + | chr3_2:86798849-86798868 | Msa0434050:CDS | 40.0% | |
| ! | AAGTCACAACAATTTTGGGC+TGG | - | chr3_2:86798875-86798894 | None:intergenic | 40.0% |
| CATCTGCTTACATTTCCTGT+TGG | - | chr3_2:86798905-86798924 | None:intergenic | 40.0% | |
| CATCGGAGACAACAAAAGTA+GGG | - | chr3_2:86799035-86799054 | None:intergenic | 40.0% | |
| ACTGCTAATCGCAACTTCTT+AGG | + | chr3_2:86799161-86799180 | Msa0434050:intron | 40.0% | |
| GTTAGGAACATGCCTTAACT+AGG | + | chr3_2:86799246-86799265 | Msa0434050:intron | 40.0% | |
| AAATAGGCCAAGCAATCAAG+TGG | + | chr3_2:86799281-86799300 | Msa0434050:intron | 40.0% | |
| AATAGGCCAAGCAATCAAGT+GGG | + | chr3_2:86799282-86799301 | Msa0434050:intron | 40.0% | |
| ACCTGAAGATGACAGATACT+GGG | - | chr3_2:86799523-86799542 | None:intergenic | 40.0% | |
| AACCTGAAGATGACAGATAC+TGG | - | chr3_2:86799524-86799543 | None:intergenic | 40.0% | |
| ! | TCAAAGACTGTTCTTGCTGT+TGG | + | chr3_2:86799553-86799572 | Msa0434050:CDS | 40.0% |
| AAAGCAACACAAAGCTAACC+AGG | - | chr3_2:86799580-86799599 | None:intergenic | 40.0% | |
| GATGTTCATGCACATGCTAT+TGG | - | chr3_2:86799645-86799664 | None:intergenic | 40.0% | |
| GGATTTGAATGTTGCTCTCT+TGG | + | chr3_2:86799684-86799703 | Msa0434050:intron | 40.0% | |
| ! | TGCTCTCTTGGATTTGTTTC+AGG | + | chr3_2:86799696-86799715 | Msa0434050:intron | 40.0% |
| ! | GCTCTCTTGGATTTGTTTCA+GGG | + | chr3_2:86799697-86799716 | Msa0434050:intron | 40.0% |
| GCCAAAAGCAATTCTGGATT+CGG | + | chr3_2:86799719-86799738 | Msa0434050:CDS | 40.0% | |
| ! | ACCGAATCCAGAATTGCTTT+TGG | - | chr3_2:86799723-86799742 | None:intergenic | 40.0% |
| GTTAACCTATGGTCTGTCTT+CGG | + | chr3_2:86799817-86799836 | Msa0434050:three_prime_UTR | 40.0% | |
| TTAACCTATGGTCTGTCTTC+GGG | + | chr3_2:86799818-86799837 | Msa0434050:three_prime_UTR | 40.0% | |
| CCCAGGAAATTTGAGTAGTG+AGG | + | chr3_2:86795786-86795805 | Msa0434050:intron | 45.0% | |
| CCCTCACTACTCAAATTTCC+TGG | - | chr3_2:86795790-86795809 | None:intergenic | 45.0% | |
| TGGGTGGACCCTTAAAAAAG+AGG | - | chr3_2:86795879-86795898 | None:intergenic | 45.0% | |
| CAATTTGTGAGGATCATGGG+TGG | - | chr3_2:86795895-86795914 | None:intergenic | 45.0% | |
| CGGTCAATTTGTGAGGATCA+TGG | - | chr3_2:86795899-86795918 | None:intergenic | 45.0% | |
| CTATTGCCGGTCAATTTGTG+AGG | - | chr3_2:86796725-86796744 | None:intergenic | 45.0% | |
| CGAAGTGTACTCACTATTGC+CGG | - | chr3_2:86795919-86795938 | None:intergenic | 45.0% | |
| TAAACAGGTGGTTCCGGAAT+CGG | - | chr3_2:86796183-86796202 | None:intergenic | 45.0% | |
| TGGTTAGAAGACACGTCCTT+GGG | - | chr3_2:86796227-86796246 | None:intergenic | 45.0% | |
| ACTCCCCAATAAAAAGGAGG+AGG | + | chr3_2:86796652-86796671 | Msa0434050:intron | 45.0% | |
| ! | CCTCCTCCTCCTTTTTATTG+GGG | - | chr3_2:86796658-86796677 | None:intergenic | 45.0% |
| ! | CCCTCCTCCTCCTTTTTATT+GGG | - | chr3_2:86796659-86796678 | None:intergenic | 45.0% |
| CCCAATAAAAAGGAGGAGGA+GGG | + | chr3_2:86796656-86796675 | Msa0434050:intron | 45.0% | |
| ! | ACCCTCCTCCTCCTTTTTAT+TGG | - | chr3_2:86796660-86796679 | None:intergenic | 45.0% |
| CACAAATTGACCGGCAATAG+TGG | - | chr3_2:86795906-86795925 | None:intergenic | 45.0% | |
| CTATTGCCGGTCAATTTGTG+AGG | + | chr3_2:86796725-86796744 | Msa0434050:intron | 45.0% | |
| CATGGTCCTCACAAATTGAC+CGG | - | chr3_2:86796734-86796753 | None:intergenic | 45.0% | |
| CAATTTGTGAGGACCATGGT+TGG | + | chr3_2:86796736-86796755 | Msa0434050:intron | 45.0% | |
| TAAAATTGGTGTGAGGGCCT+TGG | + | chr3_2:86797147-86797166 | Msa0434050:intron | 45.0% | |
| ACCCACATAGAGAGCTATGT+GGG | - | chr3_2:86797173-86797192 | None:intergenic | 45.0% | |
| GTTGGAGAACATTGCCTTCA+GGG | - | chr3_2:86797200-86797219 | None:intergenic | 45.0% | |
| !! | CTGTTCGGTGGATTTTAGGT+TGG | - | chr3_2:86797218-86797237 | None:intergenic | 45.0% |
| CAACCTAAAATCCACCGAAC+AGG | + | chr3_2:86797216-86797235 | Msa0434050:CDS | 45.0% | |
| !!! | GAGTTGGTTTTGAAGCTTGG+TGG | - | chr3_2:86797546-86797565 | None:intergenic | 45.0% |
| AAGCCAACACAACACCTACA+CGG | + | chr3_2:86797702-86797721 | Msa0434050:intron | 45.0% | |
| ACAAATGTTATGAGGAGGGG+GGG | + | chr3_2:86798053-86798072 | Msa0434050:intron | 45.0% | |
| ! | TACTAGCCTGTGCCTTTACA+TGG | + | chr3_2:86798321-86798340 | Msa0434050:intron | 45.0% |
| TAATTCAGCATACATGCCGG+TGG | - | chr3_2:86798375-86798394 | None:intergenic | 45.0% | |
| ACCAATCCACCTACCAACAT+CGG | + | chr3_2:86798409-86798428 | Msa0434050:intron | 45.0% | |
| ! | ATGAAACCGATGTTGGTAGG+TGG | - | chr3_2:86798418-86798437 | None:intergenic | 45.0% |
| ! | TGTGACTTGCAAGAACCAAC+AGG | + | chr3_2:86798887-86798906 | Msa0434050:CDS | 45.0% |
| !! | TCCTGACCTGGATTTTGATC+AGG | + | chr3_2:86798974-86798993 | Msa0434050:intron | 45.0% |
| TCCTGATCAAAATCCAGGTC+AGG | - | chr3_2:86798978-86798997 | None:intergenic | 45.0% | |
| GCATCGGAGACAACAAAAGT+AGG | - | chr3_2:86799036-86799055 | None:intergenic | 45.0% | |
| !! | ACTTTTGTTGTCTCCGATGC+AGG | + | chr3_2:86799036-86799055 | Msa0434050:CDS | 45.0% |
| GAGTGTGAGGAGATGAAATC+CGG | - | chr3_2:86799203-86799222 | None:intergenic | 45.0% | |
| ATAGGCCAAGCAATCAAGTG+GGG | + | chr3_2:86799283-86799302 | Msa0434050:intron | 45.0% | |
| ! | TGCTGTTATTTACGCACCGT+TGG | + | chr3_2:86799315-86799334 | Msa0434050:intron | 45.0% |
| AGACCAAGCTGTTGAACTCA+TGG | + | chr3_2:86799404-86799423 | Msa0434050:intron | 45.0% | |
| GACCAAGCTGTTGAACTCAT+GGG | + | chr3_2:86799405-86799424 | Msa0434050:intron | 45.0% | |
| ACCCAGTATCTGTCATCTTC+AGG | + | chr3_2:86799519-86799538 | Msa0434050:intron | 45.0% | |
| ! | TGTCATCTTCAGGTTTCAGC+AGG | + | chr3_2:86799529-86799548 | Msa0434050:intron | 45.0% |
| TTCAGGGCCAAAAGCAATTC+TGG | + | chr3_2:86799713-86799732 | Msa0434050:intron | 45.0% | |
| ! | CTGGCTGATTTATCACGCTA+TGG | - | chr3_2:86799792-86799811 | None:intergenic | 45.0% |
| CATAGCGTGATAAATCAGCC+AGG | + | chr3_2:86799790-86799809 | Msa0434050:three_prime_UTR | 45.0% | |
| !! | AGCCAGGCTTTGTTAACCTA+TGG | + | chr3_2:86799806-86799825 | Msa0434050:three_prime_UTR | 45.0% |
| GACCATAGGTTAACAAAGCC+TGG | - | chr3_2:86799811-86799830 | None:intergenic | 45.0% | |
| !! | TTTATTATACTTATAAATAT+AGG | + | chr3_2:86797055-86797074 | Msa0434050:intron | 5.0% |
| GCATGCTTCAGTGACCAAAC+CGG | + | chr3_2:86795699-86795718 | Msa0434050:five_prime_UTR | 50.0% | |
| CAACGCAAGGCAATCAGTGA+CGG | + | chr3_2:86795762-86795781 | Msa0434050:intron | 50.0% | |
| TTTGAACCCTTGGTCAGTCG+CGG | + | chr3_2:86796115-86796134 | Msa0434050:intron | 50.0% | |
| GGATATGGCGGTGACATTGA+AGG | - | chr3_2:86796141-86796160 | None:intergenic | 50.0% | |
| AATGTCACCGCCATATCCTC+CGG | + | chr3_2:86796143-86796162 | Msa0434050:intron | 50.0% | |
| AAAGTGACCGGAGGATATGG+CGG | - | chr3_2:86796153-86796172 | None:intergenic | 50.0% | |
| GGTAAAGTGACCGGAGGATA+TGG | - | chr3_2:86796156-86796175 | None:intergenic | 50.0% | |
| ATCGGAGTGGGTAAAGTGAC+CGG | - | chr3_2:86796165-86796184 | None:intergenic | 50.0% | |
| CACTTTACCCACTCCGATTC+CGG | + | chr3_2:86796167-86796186 | Msa0434050:intron | 50.0% | |
| CTGGTTAGAAGACACGTCCT+TGG | - | chr3_2:86796228-86796247 | None:intergenic | 50.0% | |
| GATGTTGACAGTGAGCGTGA+AGG | + | chr3_2:86796327-86796346 | Msa0434050:intron | 50.0% | |
| CCCCAATAAAAAGGAGGAGG+AGG | + | chr3_2:86796655-86796674 | Msa0434050:intron | 50.0% | |
| CGGTCAATTTGTGAGGACCA+TGG | + | chr3_2:86796732-86796751 | Msa0434050:intron | 50.0% | |
| ATAGAGAGCTATGTGGGCCA+AGG | - | chr3_2:86797167-86797186 | None:intergenic | 50.0% | |
| GCCCACATAGCTCTCTATGT+GGG | + | chr3_2:86797169-86797188 | Msa0434050:intron | 50.0% | |
| GACCCACATAGAGAGCTATG+TGG | - | chr3_2:86797174-86797193 | None:intergenic | 50.0% | |
| GAGAACATTGCCTTCAGGGA+CGG | - | chr3_2:86797196-86797215 | None:intergenic | 50.0% | |
| GGTTGGAGAACATTGCCTTC+AGG | - | chr3_2:86797201-86797220 | None:intergenic | 50.0% | |
| ! | TAGCCGTGTAGGTGTTGTGT+TGG | - | chr3_2:86797708-86797727 | None:intergenic | 50.0% |
| ! | ACCGATGTTGGTAGGTGGAT+TGG | - | chr3_2:86798413-86798432 | None:intergenic | 50.0% |
| CAGAGACATGAATCCTGACC+TGG | + | chr3_2:86798962-86798981 | Msa0434050:intron | 50.0% | |
| TAAGCTCAAGGAAGCAGCTG+AGG | + | chr3_2:86798999-86799018 | Msa0434050:CDS | 50.0% | |
| AAGCTCAAGGAAGCAGCTGA+GGG | + | chr3_2:86799000-86799019 | Msa0434050:CDS | 50.0% | |
| ! | AAGGAAGCAGCTGAGGGTAT+TGG | + | chr3_2:86799006-86799025 | Msa0434050:CDS | 50.0% |
| !! | AGGAAGCAGCTGAGGGTATT+GGG | + | chr3_2:86799007-86799026 | Msa0434050:CDS | 50.0% |
| TACCTGTGTTCGTCCTGCAT+CGG | - | chr3_2:86799052-86799071 | None:intergenic | 50.0% | |
| AGGAATGCATGTTGAAGGGC+CGG | + | chr3_2:86799181-86799200 | Msa0434050:intron | 50.0% | |
| GCTAACCCCACTTGATTGCT+TGG | - | chr3_2:86799291-86799310 | None:intergenic | 50.0% | |
| ATAGAGGGGCAGCGAAAGAA+AGG | + | chr3_2:86799352-86799371 | Msa0434050:intron | 50.0% | |
| TAGAGGGGCAGCGAAAGAAA+GGG | + | chr3_2:86799353-86799372 | Msa0434050:intron | 50.0% | |
| CTCCCATGAGTTCAACAGCT+TGG | - | chr3_2:86799410-86799429 | None:intergenic | 50.0% | |
| !! | ACTGTTCTTGCTGTTGGACC+TGG | + | chr3_2:86799559-86799578 | Msa0434050:CDS | 50.0% |
| !! | GCAATTCTGGATTCGGTGAC+TGG | + | chr3_2:86799726-86799745 | Msa0434050:CDS | 50.0% |
| !! | TTCTGGATTCGGTGACTGGA+AGG | + | chr3_2:86799730-86799749 | Msa0434050:CDS | 50.0% |
| GGCCCACATAGCTCTCTATG+TGG | + | chr3_2:86797168-86797187 | Msa0434050:intron | 55.0% | |
| CAACACCTACACGGCTACAC+CGG | + | chr3_2:86797711-86797730 | Msa0434050:intron | 55.0% | |
| TGTTACCGGTGTAGCCGTGT+AGG | - | chr3_2:86797719-86797738 | None:intergenic | 55.0% | |
| TGTATGGCAGATGCTGCCAC+CGG | + | chr3_2:86798356-86798375 | Msa0434050:intron | 55.0% | |
| !! | GGATTCGGTGACTGGAAGGT+TGG | + | chr3_2:86799734-86799753 | Msa0434050:CDS | 55.0% |
| TGTGCCCGAAGACAGACCAT+AGG | - | chr3_2:86799825-86799844 | None:intergenic | 55.0% | |
| !! | AGGCAATCAGTGACGGACCC+AGG | + | chr3_2:86795769-86795788 | Msa0434050:intron | 60.0% |
| TGAAGGCCGCGACTGACCAA+GGG | - | chr3_2:86796124-86796143 | None:intergenic | 60.0% | |
| TTGAAGGCCGCGACTGACCA+AGG | - | chr3_2:86796125-86796144 | None:intergenic | 60.0% | |
| GGAGTGGGTAAAGTGACCGG+AGG | - | chr3_2:86796162-86796181 | None:intergenic | 60.0% | |
| GGTGGTTCCGGAATCGGAGT+GGG | - | chr3_2:86796177-86796196 | None:intergenic | 60.0% | |
| AGGTGGTTCCGGAATCGGAG+TGG | - | chr3_2:86796178-86796197 | None:intergenic | 60.0% | |
| CTATGTGGGTCCGTCCCTGA+AGG | + | chr3_2:86797183-86797202 | Msa0434050:intron | 60.0% | |
| CTCCGATGCAGGACGAACAC+AGG | + | chr3_2:86799047-86799066 | Msa0434050:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 86795659 | 86799956 | 86795659 | ID=Msa0434050;Name=Msa0434050 |
| chr3_2 | mRNA | 86795659 | 86799956 | 86795659 | ID=Msa0434050-mRNA-1;Parent=Msa0434050;Name=Msa0434050-mRNA-1;_AED=0.24;_eAED=0.24;_QI=115|1|1|1|0.87|0.77|9|189|193 |
| chr3_2 | exon | 86795659 | 86795770 | 86795659 | ID=Msa0434050-mRNA-1:exon:25185;Parent=Msa0434050-mRNA-1 |
| chr3_2 | exon | 86797205 | 86797237 | 86797205 | ID=Msa0434050-mRNA-1:exon:25186;Parent=Msa0434050-mRNA-1 |
| chr3_2 | exon | 86797392 | 86797604 | 86797392 | ID=Msa0434050-mRNA-1:exon:25187;Parent=Msa0434050-mRNA-1 |
| chr3_2 | exon | 86798164 | 86798224 | 86798164 | ID=Msa0434050-mRNA-1:exon:25188;Parent=Msa0434050-mRNA-1 |
| chr3_2 | exon | 86798366 | 86798402 | 86798366 | ID=Msa0434050-mRNA-1:exon:25189;Parent=Msa0434050-mRNA-1 |
| chr3_2 | exon | 86798836 | 86798913 | 86798836 | ID=Msa0434050-mRNA-1:exon:25190;Parent=Msa0434050-mRNA-1 |
| chr3_2 | exon | 86798996 | 86799068 | 86798996 | ID=Msa0434050-mRNA-1:exon:25191;Parent=Msa0434050-mRNA-1 |
| chr3_2 | exon | 86799541 | 86799580 | 86799541 | ID=Msa0434050-mRNA-1:exon:25192;Parent=Msa0434050-mRNA-1 |
| chr3_2 | exon | 86799718 | 86799956 | 86799718 | ID=Msa0434050-mRNA-1:exon:25193;Parent=Msa0434050-mRNA-1 |
| chr3_2 | five_prime_UTR | 86795659 | 86795770 | 86795659 | ID=Msa0434050-mRNA-1:five_prime_utr;Parent=Msa0434050-mRNA-1 |
| chr3_2 | five_prime_UTR | 86797205 | 86797207 | 86797205 | ID=Msa0434050-mRNA-1:five_prime_utr;Parent=Msa0434050-mRNA-1 |
| chr3_2 | CDS | 86797208 | 86797237 | 86797208 | ID=Msa0434050-mRNA-1:cds;Parent=Msa0434050-mRNA-1 |
| chr3_2 | CDS | 86797392 | 86797604 | 86797392 | ID=Msa0434050-mRNA-1:cds;Parent=Msa0434050-mRNA-1 |
| chr3_2 | CDS | 86798164 | 86798224 | 86798164 | ID=Msa0434050-mRNA-1:cds;Parent=Msa0434050-mRNA-1 |
| chr3_2 | CDS | 86798366 | 86798402 | 86798366 | ID=Msa0434050-mRNA-1:cds;Parent=Msa0434050-mRNA-1 |
| chr3_2 | CDS | 86798836 | 86798913 | 86798836 | ID=Msa0434050-mRNA-1:cds;Parent=Msa0434050-mRNA-1 |
| chr3_2 | CDS | 86798996 | 86799068 | 86798996 | ID=Msa0434050-mRNA-1:cds;Parent=Msa0434050-mRNA-1 |
| chr3_2 | CDS | 86799541 | 86799580 | 86799541 | ID=Msa0434050-mRNA-1:cds;Parent=Msa0434050-mRNA-1 |
| chr3_2 | CDS | 86799718 | 86799767 | 86799718 | ID=Msa0434050-mRNA-1:cds;Parent=Msa0434050-mRNA-1 |
| chr3_2 | three_prime_UTR | 86799768 | 86799956 | 86799768 | ID=Msa0434050-mRNA-1:three_prime_utr;Parent=Msa0434050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
