AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1223840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1223840 MtrunA17_Chr4g0075721 88.785 214 10 4 4 216 1 201 3.56e-109 311
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1223840 AT5G20130.1 51.807 166 74 3 52 216 42 202 3.82e-41 139
Msa1223840 AT5G20130.2 51.807 166 74 3 52 216 71 231 1.85e-40 138

Find 87 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCACCTGAGTGATTAATTT+TGG 0.189253 8_1:-88459368 Msa1223840:three_prime_UTR
AAATAACACTATGCTCTAAA+AGG 0.194684 8_1:+88459494 None:intergenic
GTTGGTTTGGGTGGGGTAGA+TGG 0.204366 8_1:-88459963 Msa1223840:CDS
CAAGCTTGTAGAGGATAATT+TGG 0.207892 8_1:+88459311 None:intergenic
CTGGAGGAGGTTGGTTTGGG+TGG 0.219431 8_1:-88459972 Msa1223840:CDS
AAGAGAGCGTTGTAAGAAAA+TGG 0.252399 8_1:-88459563 Msa1223840:CDS
TCCATTGCTGTATGCACTTC+GGG 0.261348 8_1:-88459703 Msa1223840:CDS
TAAAAGAGTTCAGAGTTATT+AGG 0.290552 8_1:-88459260 Msa1223840:three_prime_UTR
TTTGGACGTTAACTGAATTC+AGG 0.299821 8_1:+88459329 None:intergenic
GTGCTGGAGGAGGTTGGTTT+GGG 0.308879 8_1:-88459975 Msa1223840:CDS
GGTGCTGGAGGAGGTTGGTT+TGG 0.312842 8_1:-88459976 Msa1223840:CDS
TGGAGGAGGTTGGTTTGGGT+GGG 0.343284 8_1:-88459971 Msa1223840:CDS
GGAGGAGGTTGGTTTGGGTG+GGG 0.346451 8_1:-88459970 Msa1223840:CDS
TTTGGGTGGGGTAGATGGTT+TGG 0.362531 8_1:-88459958 Msa1223840:CDS
TTTATATTACCCCTCATTGT+TGG 0.370611 8_1:-88459474 Msa1223840:three_prime_UTR
TTCAGAGTTATTAGGTTAAA+CGG 0.375387 8_1:-88459252 Msa1223840:three_prime_UTR
GCTGCTTAGTCGTCGTCAAT+TGG 0.383421 8_1:+88460943 None:intergenic
TTCAAAGAGCCATCAAAATC+AGG 0.393603 8_1:+88459615 None:intergenic
GGAGGTGACAGCGGCGGTGC+TGG 0.396880 8_1:-88459991 Msa1223840:CDS
AGAGAGCGTTGTAAGAAAAT+GGG 0.401097 8_1:-88459562 Msa1223840:CDS
ATACAGCATGGAGCATAATA+AGG 0.404987 8_1:+88459440 None:intergenic
AGATTCTTAATTCATTTGTT+CGG 0.411946 8_1:+88461061 None:intergenic
ATCCTCTACAAGCTTGCAAT+TGG 0.413331 8_1:-88459304 Msa1223840:three_prime_UTR
CGGGGAGTGAGAAATGGATT+TGG 0.413388 8_1:-88459684 Msa1223840:CDS
AATCAAAAGACGAGAAGAGC+TGG 0.418830 8_1:-88460019 Msa1223840:CDS
AACGATGGCGTGACCTGATT+AGG 0.420437 8_1:+88460967 None:intergenic
AATAACACTATGCTCTAAAA+GGG 0.435280 8_1:+88459495 None:intergenic
CAAGCTAGTCTTACTATACT+TGG 0.438781 8_1:-88459898 Msa1223840:CDS
TCCCGTATTCAATCCTAATC+AGG 0.439070 8_1:-88460980 Msa1223840:CDS
CGAGAAGAGCTGGGAGGCGG+AGG 0.440547 8_1:-88460009 Msa1223840:CDS
TTATTTGTTTGTCACAGGTT+AGG 0.453977 8_1:-88459524 Msa1223840:three_prime_UTR
CTCCATGCTGTATGTTAGTA+AGG 0.457008 8_1:-88459430 Msa1223840:three_prime_UTR
CTGCTTAGTCGTCGTCAATT+GGG 0.460767 8_1:+88460944 None:intergenic
GACAGCGGCGGTGCTGGAGG+AGG 0.464114 8_1:-88459985 Msa1223840:CDS
GCACTTCGGGGAGTGAGAAA+TGG 0.464500 8_1:-88459690 Msa1223840:CDS
CAAGCTAGAAAAGCATTAGA+AGG 0.475399 8_1:-88460087 Msa1223840:CDS
GGTGGGGTAGATGGTTTGGC+TGG 0.477513 8_1:-88459954 Msa1223840:CDS
GTAGATTATTTGTTTGTCAC+AGG 0.478487 8_1:-88459529 Msa1223840:three_prime_UTR
AGAAAATTGAATTTGACAAG+TGG 0.484614 8_1:-88460050 Msa1223840:CDS
ATCCATTGCTGTATGCACTT+CGG 0.485612 8_1:-88459704 Msa1223840:CDS
CAGTATATCCTAGTTGCAAA+AGG 0.489427 8_1:-88459753 Msa1223840:CDS
TTGAATACGGGACTCCTCCT+AGG 0.496159 8_1:+88460991 None:intergenic
GACCTGATTAGGATTGAATA+CGG 0.498106 8_1:+88460978 None:intergenic
AGGAAAACTAAGTGGAGGAA+TGG 0.510482 8_1:-88461036 Msa1223840:exon
GGTGACAGCGGCGGTGCTGG+AGG 0.514884 8_1:-88459988 Msa1223840:CDS
GAAAATTGAATTTGACAAGT+GGG 0.514902 8_1:-88460049 Msa1223840:CDS
AGACGAGAAGAGCTGGGAGG+CGG 0.517079 8_1:-88460012 Msa1223840:CDS
GCGGCGGTGCTGGAGGAGGT+TGG 0.517578 8_1:-88459981 Msa1223840:CDS
AGAGGCAGGTGAATCTGCTT+CGG 0.520608 8_1:+88460862 None:intergenic
GCATTAGAAGGTGCATTAAG+TGG 0.523555 8_1:-88460075 Msa1223840:CDS
CTACAAGCTTGCAATTGGTA+AGG 0.528899 8_1:-88459299 Msa1223840:three_prime_UTR
AATTAATCACTCAGGTGCCA+AGG 0.537967 8_1:+88459372 None:intergenic
GATGGCTCTTTGAAGAAGGA+AGG 0.548351 8_1:-88459606 Msa1223840:CDS
ATTAATCACTCAGGTGCCAA+GGG 0.555177 8_1:+88459373 None:intergenic
GTTGTTGTCTGAGAAGAGGC+AGG 0.558606 8_1:+88460848 None:intergenic
GAGAGCGTTGTAAGAAAATG+GGG 0.569827 8_1:-88459561 Msa1223840:CDS
CTGGGAGGCGGAGGTGACAG+CGG 0.571119 8_1:-88460000 Msa1223840:CDS
GGAGGCGGAGGTGACAGCGG+CGG 0.580483 8_1:-88459997 Msa1223840:CDS
AAGTGGAGGAATGGAAAGCA+TGG 0.580913 8_1:-88461027 Msa1223840:exon
CGCCTTACTAACATACAGCA+TGG 0.581053 8_1:+88459428 None:intergenic
TACCAATTGCAAGCTTGTAG+AGG 0.582402 8_1:+88459302 None:intergenic
ATCAAAAGACGAGAAGAGCT+GGG 0.583730 8_1:-88460018 Msa1223840:CDS
CATTAGAAGGTGCATTAAGT+GGG 0.584288 8_1:-88460074 Msa1223840:CDS
CCCCGAAGTGCATACAGCAA+TGG 0.590470 8_1:+88459702 None:intergenic
GAATCTAGAGGAAAACTAAG+TGG 0.592237 8_1:-88461044 Msa1223840:five_prime_UTR
GATGAAAGAACCAACAATGA+GGG 0.593980 8_1:+88459464 None:intergenic
GCAGGTGAATCTGCTTCGGT+TGG 0.595607 8_1:+88460866 None:intergenic
AACTGAGTTTGTGCTGTAAG+CGG 0.600011 8_1:+88460892 None:intergenic
ACACTATGCTCTAAAAGGGA+TGG 0.600166 8_1:+88459499 None:intergenic
AAAACCAAAATTAATCACTC+AGG 0.601447 8_1:+88459364 None:intergenic
TGATGAAAGAACCAACAATG+AGG 0.607409 8_1:+88459463 None:intergenic
ATGGGAGCAATTGTAAACCT+AGG 0.620327 8_1:-88461008 Msa1223840:CDS
ACCTGATTAGGATTGAATAC+GGG 0.620878 8_1:+88460979 None:intergenic
AGTGGAGGAATGGAAAGCAT+GGG 0.629305 8_1:-88461026 Msa1223840:exon
TCGTCGTCAATTGGGAACGA+TGG 0.631589 8_1:+88460952 None:intergenic
ATACAGCAATGGATTGATGA+TGG 0.639169 8_1:+88459713 None:intergenic
CTCAGACAACAACAAAAGAG+AGG 0.641852 8_1:-88460838 Msa1223840:intron
TCTAGAGGAAAACTAAGTGG+AGG 0.649047 8_1:-88461041 Msa1223840:five_prime_UTR
GGAGCAATTGTAAACCTAGG+AGG 0.664395 8_1:-88461005 Msa1223840:CDS
CCATTGCTGTATGCACTTCG+GGG 0.665878 8_1:-88459702 Msa1223840:CDS
ATGAAAGAACCAACAATGAG+GGG 0.668798 8_1:+88459465 None:intergenic
AGAGTTATTAGGTTAAACGG+TGG 0.683770 8_1:-88459249 None:intergenic
CAAATGAATTAAGAATCTAG+AGG 0.685183 8_1:-88461056 Msa1223840:five_prime_UTR
AACTGAATTCAGGATAACCA+CGG 0.705138 8_1:+88459339 None:intergenic
TTAATCACTCAGGTGCCAAG+GGG 0.720967 8_1:+88459374 None:intergenic
ATGGATTGATGATGGCAGCG+AGG 0.723355 8_1:+88459721 None:intergenic
AAAAGACGAGAAGAGCTGGG+AGG 0.769117 8_1:-88460015 Msa1223840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATCCATATATTTATTATT+AGG + chr8_1:88459830-88459849 None:intergenic 10.0%
!!! TTTATCTTAATTTATTTTGT+TGG - chr8_1:88459929-88459948 Msa1223840:CDS 10.0%
!! AAATCCATATATTTATTATT+AGG + chr8_1:88459830-88459849 None:intergenic 10.0%
!!! TTTATCTTAATTTATTTTGT+TGG - chr8_1:88459929-88459948 Msa1223840:CDS 10.0%
!! AAGTTGTATCTTATTATATT+CGG + chr8_1:88459772-88459791 None:intergenic 15.0%
!! ATTGGAATCATAAATAAATT+AGG + chr8_1:88459807-88459826 None:intergenic 15.0%
!! CATATATTTATTATTAGGAT+TGG + chr8_1:88459825-88459844 None:intergenic 15.0%
!! CAATCCTAATAATAAATATA+TGG - chr8_1:88459823-88459842 Msa1223840:intron 15.0%
!! AATTAAATATGTTCTACATT+AGG + chr8_1:88459958-88459977 None:intergenic 15.0%
!! AAGTTGTATCTTATTATATT+CGG + chr8_1:88459772-88459791 None:intergenic 15.0%
!! ATTGGAATCATAAATAAATT+AGG + chr8_1:88459807-88459826 None:intergenic 15.0%
!! CATATATTTATTATTAGGAT+TGG + chr8_1:88459825-88459844 None:intergenic 15.0%
!! CAATCCTAATAATAAATATA+TGG - chr8_1:88459823-88459842 Msa1223840:intron 15.0%
!! AATTAAATATGTTCTACATT+AGG + chr8_1:88459958-88459977 None:intergenic 15.0%
!! AGATTCTTAATTCATTTGTT+CGG + chr8_1:88459267-88459286 None:intergenic 20.0%
!! TGAATGAATGAATATGAAAT+AGG + chr8_1:88459519-88459538 None:intergenic 20.0%
!! CAAAAAATAAAACTGAAGTT+GGG + chr8_1:88459577-88459596 None:intergenic 20.0%
!! ACAAAAAATAAAACTGAAGT+TGG + chr8_1:88459578-88459597 None:intergenic 20.0%
!! ATATGCTATTATAAATAGAG+AGG + chr8_1:88459745-88459764 None:intergenic 20.0%
!! CAGTGATAAATTAATTTCTA+TGG + chr8_1:88460083-88460102 None:intergenic 20.0%
!! AGATTCTTAATTCATTTGTT+CGG + chr8_1:88459267-88459286 None:intergenic 20.0%
!! TGAATGAATGAATATGAAAT+AGG + chr8_1:88459519-88459538 None:intergenic 20.0%
!! CAAAAAATAAAACTGAAGTT+GGG + chr8_1:88459577-88459596 None:intergenic 20.0%
!! ACAAAAAATAAAACTGAAGT+TGG + chr8_1:88459578-88459597 None:intergenic 20.0%
!! ATATGCTATTATAAATAGAG+AGG + chr8_1:88459745-88459764 None:intergenic 20.0%
!! CAGTGATAAATTAATTTCTA+TGG + chr8_1:88460083-88460102 None:intergenic 20.0%
! CAAATGAATTAAGAATCTAG+AGG - chr8_1:88459269-88459288 Msa1223840:three_prime_UTR 25.0%
!! AATTTTGTAGTAGCATTTCA+TGG - chr8_1:88459632-88459651 Msa1223840:CDS 25.0%
! TAAAGAAATGAATTGCTATG+AGG + chr8_1:88459668-88459687 None:intergenic 25.0%
! TAAATATGTTCTACATTAGG+AGG + chr8_1:88459955-88459974 None:intergenic 25.0%
!! TATAGTCTCTGATCTAATTT+TGG - chr8_1:88460041-88460060 Msa1223840:CDS 25.0%
!! ATAGTCTCTGATCTAATTTT+GGG - chr8_1:88460042-88460061 Msa1223840:CDS 25.0%
! AGAAAATTGAATTTGACAAG+TGG - chr8_1:88460275-88460294 Msa1223840:intron 25.0%
! GAAAATTGAATTTGACAAGT+GGG - chr8_1:88460276-88460295 Msa1223840:intron 25.0%
!! GGTCTAATGATGATAATTTT+TGG - chr8_1:88460392-88460411 Msa1223840:intron 25.0%
! GTCTTGAAAAATACTTCTAA+CGG - chr8_1:88460680-88460699 Msa1223840:intron 25.0%
!!! AATAACACTATGCTCTAAAA+GGG + chr8_1:88460833-88460852 None:intergenic 25.0%
!! AAATAACACTATGCTCTAAA+AGG + chr8_1:88460834-88460853 None:intergenic 25.0%
! AAAACCAAAATTAATCACTC+AGG + chr8_1:88460964-88460983 None:intergenic 25.0%
!! AATAACTCTGAACTCTTTTA+CGG + chr8_1:88461065-88461084 None:intergenic 25.0%
! TAAAAGAGTTCAGAGTTATT+AGG - chr8_1:88461065-88461084 Msa1223840:five_prime_UTR 25.0%
! TTCAGAGTTATTAGGTTAAA+CGG - chr8_1:88461073-88461092 Msa1223840:five_prime_UTR 25.0%
! CAAATGAATTAAGAATCTAG+AGG - chr8_1:88459269-88459288 Msa1223840:three_prime_UTR 25.0%
!! AATTTTGTAGTAGCATTTCA+TGG - chr8_1:88459632-88459651 Msa1223840:CDS 25.0%
! TAAAGAAATGAATTGCTATG+AGG + chr8_1:88459668-88459687 None:intergenic 25.0%
! TAAATATGTTCTACATTAGG+AGG + chr8_1:88459955-88459974 None:intergenic 25.0%
!! TATAGTCTCTGATCTAATTT+TGG - chr8_1:88460041-88460060 Msa1223840:CDS 25.0%
!! ATAGTCTCTGATCTAATTTT+GGG - chr8_1:88460042-88460061 Msa1223840:CDS 25.0%
! AGAAAATTGAATTTGACAAG+TGG - chr8_1:88460275-88460294 Msa1223840:intron 25.0%
! GAAAATTGAATTTGACAAGT+GGG - chr8_1:88460276-88460295 Msa1223840:intron 25.0%
!! GGTCTAATGATGATAATTTT+TGG - chr8_1:88460392-88460411 Msa1223840:intron 25.0%
! GTCTTGAAAAATACTTCTAA+CGG - chr8_1:88460680-88460699 Msa1223840:intron 25.0%
!!! AATAACACTATGCTCTAAAA+GGG + chr8_1:88460833-88460852 None:intergenic 25.0%
!! AAATAACACTATGCTCTAAA+AGG + chr8_1:88460834-88460853 None:intergenic 25.0%
! AAAACCAAAATTAATCACTC+AGG + chr8_1:88460964-88460983 None:intergenic 25.0%
!! AATAACTCTGAACTCTTTTA+CGG + chr8_1:88461065-88461084 None:intergenic 25.0%
! TAAAAGAGTTCAGAGTTATT+AGG - chr8_1:88461065-88461084 Msa1223840:five_prime_UTR 25.0%
! TTCAGAGTTATTAGGTTAAA+CGG - chr8_1:88461073-88461092 Msa1223840:five_prime_UTR 25.0%
ATGCTACTACAAAATTATGC+AGG + chr8_1:88459628-88459647 None:intergenic 30.0%
AATCAACATAGTATGAGAGT+AGG + chr8_1:88459709-88459728 None:intergenic 30.0%
CAAACAAGTTCAGTTAAGAA+AGG + chr8_1:88459901-88459920 None:intergenic 30.0%
! CTTTCTTAACTGAACTTGTT+TGG - chr8_1:88459899-88459918 Msa1223840:CDS 30.0%
! TAGTCTCTGATCTAATTTTG+GGG - chr8_1:88460043-88460062 Msa1223840:CDS 30.0%
! CATATCTGAGACTATAAATG+CGG + chr8_1:88460135-88460154 None:intergenic 30.0%
GCATTTATAGTCTCAGATAT+GGG - chr8_1:88460134-88460153 Msa1223840:intron 30.0%
CATTTATAGTCTCAGATATG+GGG - chr8_1:88460135-88460154 Msa1223840:intron 30.0%
ATTTATAGTCTCAGATATGG+GGG - chr8_1:88460136-88460155 Msa1223840:intron 30.0%
TATAAGTGAATTCTGATTGC+AGG - chr8_1:88460213-88460232 Msa1223840:intron 30.0%
ACTGCAAATAAAGAGAGATA+AGG + chr8_1:88460556-88460575 None:intergenic 30.0%
GTAGATTATTTGTTTGTCAC+AGG - chr8_1:88460796-88460815 Msa1223840:intron 30.0%
TTATTTGTTTGTCACAGGTT+AGG - chr8_1:88460801-88460820 Msa1223840:intron 30.0%
TTTATATTACCCCTCATTGT+TGG - chr8_1:88460851-88460870 Msa1223840:CDS 30.0%
! AGGGGAGAAAAAACATTTTT+GGG + chr8_1:88460936-88460955 None:intergenic 30.0%
! AAGGGGAGAAAAAACATTTT+TGG + chr8_1:88460937-88460956 None:intergenic 30.0%
!!! AAAAATGTTTTTTCTCCCCT+TGG - chr8_1:88460936-88460955 Msa1223840:CDS 30.0%
!!! ATTAATTTTGGTTTTCTCCG+TGG - chr8_1:88460969-88460988 Msa1223840:CDS 30.0%
ATGCTACTACAAAATTATGC+AGG + chr8_1:88459628-88459647 None:intergenic 30.0%
AATCAACATAGTATGAGAGT+AGG + chr8_1:88459709-88459728 None:intergenic 30.0%
CAAACAAGTTCAGTTAAGAA+AGG + chr8_1:88459901-88459920 None:intergenic 30.0%
! CTTTCTTAACTGAACTTGTT+TGG - chr8_1:88459899-88459918 Msa1223840:CDS 30.0%
! TAGTCTCTGATCTAATTTTG+GGG - chr8_1:88460043-88460062 Msa1223840:CDS 30.0%
! CATATCTGAGACTATAAATG+CGG + chr8_1:88460135-88460154 None:intergenic 30.0%
GCATTTATAGTCTCAGATAT+GGG - chr8_1:88460134-88460153 Msa1223840:intron 30.0%
CATTTATAGTCTCAGATATG+GGG - chr8_1:88460135-88460154 Msa1223840:intron 30.0%
ATTTATAGTCTCAGATATGG+GGG - chr8_1:88460136-88460155 Msa1223840:intron 30.0%
TATAAGTGAATTCTGATTGC+AGG - chr8_1:88460213-88460232 Msa1223840:intron 30.0%
ACTGCAAATAAAGAGAGATA+AGG + chr8_1:88460556-88460575 None:intergenic 30.0%
GTAGATTATTTGTTTGTCAC+AGG - chr8_1:88460796-88460815 Msa1223840:intron 30.0%
TTATTTGTTTGTCACAGGTT+AGG - chr8_1:88460801-88460820 Msa1223840:intron 30.0%
TTTATATTACCCCTCATTGT+TGG - chr8_1:88460851-88460870 Msa1223840:CDS 30.0%
! AGGGGAGAAAAAACATTTTT+GGG + chr8_1:88460936-88460955 None:intergenic 30.0%
! AAGGGGAGAAAAAACATTTT+TGG + chr8_1:88460937-88460956 None:intergenic 30.0%
!!! AAAAATGTTTTTTCTCCCCT+TGG - chr8_1:88460936-88460955 Msa1223840:CDS 30.0%
!!! ATTAATTTTGGTTTTCTCCG+TGG - chr8_1:88460969-88460988 Msa1223840:CDS 30.0%
GAATCTAGAGGAAAACTAAG+TGG - chr8_1:88459281-88459300 Msa1223840:three_prime_UTR 35.0%
ACCTGATTAGGATTGAATAC+GGG + chr8_1:88459349-88459368 None:intergenic 35.0%
GACCTGATTAGGATTGAATA+CGG + chr8_1:88459350-88459369 None:intergenic 35.0%
! ACTCTTCCGTTGATGAAAAA+TGG - chr8_1:88459408-88459427 Msa1223840:three_prime_UTR 35.0%
!!! TTTTGTTGTTGTCTGAGAAG+AGG + chr8_1:88459484-88459503 None:intergenic 35.0%
AAAATTATGCAGGCAGTGAA+AGG + chr8_1:88459618-88459637 None:intergenic 35.0%
TGCAATTTACTGTCACACTT+TGG - chr8_1:88459869-88459888 Msa1223840:intron 35.0%
CGCATTTATAGTCTCAGATA+TGG - chr8_1:88460133-88460152 Msa1223840:intron 35.0%
AATTTGAGAAGTGAGTTCTG+AGG - chr8_1:88460180-88460199 Msa1223840:intron 35.0%
! ATTTGAGAAGTGAGTTCTGA+GGG - chr8_1:88460181-88460200 Msa1223840:intron 35.0%
!! CAAGCTAGAAAAGCATTAGA+AGG - chr8_1:88460238-88460257 Msa1223840:intron 35.0%
! CATTAGAAGGTGCATTAAGT+GGG - chr8_1:88460251-88460270 Msa1223840:intron 35.0%
!! CAAGCTAGTCTTACTATACT+TGG - chr8_1:88460427-88460446 Msa1223840:intron 35.0%
CAGTATATCCTAGTTGCAAA+AGG - chr8_1:88460572-88460591 Msa1223840:intron 35.0%
! TCAAATCACCTTTTGCAACT+AGG + chr8_1:88460583-88460602 None:intergenic 35.0%
!! ATACAGCAATGGATTGATGA+TGG + chr8_1:88460615-88460634 None:intergenic 35.0%
TTCAAAGAGCCATCAAAATC+AGG + chr8_1:88460713-88460732 None:intergenic 35.0%
!! TTTTGATGGCTCTTTGAAGA+AGG - chr8_1:88460715-88460734 Msa1223840:intron 35.0%
!! AAGAGAGCGTTGTAAGAAAA+TGG - chr8_1:88460762-88460781 Msa1223840:intron 35.0%
!! AGAGAGCGTTGTAAGAAAAT+GGG - chr8_1:88460763-88460782 Msa1223840:intron 35.0%
ATGAAAGAACCAACAATGAG+GGG + chr8_1:88460863-88460882 None:intergenic 35.0%
GATGAAAGAACCAACAATGA+GGG + chr8_1:88460864-88460883 None:intergenic 35.0%
TGATGAAAGAACCAACAATG+AGG + chr8_1:88460865-88460884 None:intergenic 35.0%
ATACAGCATGGAGCATAATA+AGG + chr8_1:88460888-88460907 None:intergenic 35.0%
AACTGAATTCAGGATAACCA+CGG + chr8_1:88460989-88461008 None:intergenic 35.0%
TTTGGACGTTAACTGAATTC+AGG + chr8_1:88460999-88461018 None:intergenic 35.0%
CAAGCTTGTAGAGGATAATT+TGG + chr8_1:88461017-88461036 None:intergenic 35.0%
AGAGTTATTAGGTTAAACGG+TGG - chr8_1:88461076-88461095 Msa1223840:five_prime_UTR 35.0%
GAGTTATTAGGTTAAACGGT+GGG - chr8_1:88461077-88461096 Msa1223840:five_prime_UTR 35.0%
GAATCTAGAGGAAAACTAAG+TGG - chr8_1:88459281-88459300 Msa1223840:three_prime_UTR 35.0%
ACCTGATTAGGATTGAATAC+GGG + chr8_1:88459349-88459368 None:intergenic 35.0%
GACCTGATTAGGATTGAATA+CGG + chr8_1:88459350-88459369 None:intergenic 35.0%
! ACTCTTCCGTTGATGAAAAA+TGG - chr8_1:88459408-88459427 Msa1223840:three_prime_UTR 35.0%
!!! TTTTGTTGTTGTCTGAGAAG+AGG + chr8_1:88459484-88459503 None:intergenic 35.0%
AAAATTATGCAGGCAGTGAA+AGG + chr8_1:88459618-88459637 None:intergenic 35.0%
TGCAATTTACTGTCACACTT+TGG - chr8_1:88459869-88459888 Msa1223840:intron 35.0%
CGCATTTATAGTCTCAGATA+TGG - chr8_1:88460133-88460152 Msa1223840:intron 35.0%
AATTTGAGAAGTGAGTTCTG+AGG - chr8_1:88460180-88460199 Msa1223840:intron 35.0%
! ATTTGAGAAGTGAGTTCTGA+GGG - chr8_1:88460181-88460200 Msa1223840:intron 35.0%
!! CAAGCTAGAAAAGCATTAGA+AGG - chr8_1:88460238-88460257 Msa1223840:intron 35.0%
! CATTAGAAGGTGCATTAAGT+GGG - chr8_1:88460251-88460270 Msa1223840:intron 35.0%
!! CAAGCTAGTCTTACTATACT+TGG - chr8_1:88460427-88460446 Msa1223840:intron 35.0%
CAGTATATCCTAGTTGCAAA+AGG - chr8_1:88460572-88460591 Msa1223840:intron 35.0%
! TCAAATCACCTTTTGCAACT+AGG + chr8_1:88460583-88460602 None:intergenic 35.0%
!! ATACAGCAATGGATTGATGA+TGG + chr8_1:88460615-88460634 None:intergenic 35.0%
TTCAAAGAGCCATCAAAATC+AGG + chr8_1:88460713-88460732 None:intergenic 35.0%
!! TTTTGATGGCTCTTTGAAGA+AGG - chr8_1:88460715-88460734 Msa1223840:intron 35.0%
!! AAGAGAGCGTTGTAAGAAAA+TGG - chr8_1:88460762-88460781 Msa1223840:intron 35.0%
!! AGAGAGCGTTGTAAGAAAAT+GGG - chr8_1:88460763-88460782 Msa1223840:intron 35.0%
ATGAAAGAACCAACAATGAG+GGG + chr8_1:88460863-88460882 None:intergenic 35.0%
GATGAAAGAACCAACAATGA+GGG + chr8_1:88460864-88460883 None:intergenic 35.0%
TGATGAAAGAACCAACAATG+AGG + chr8_1:88460865-88460884 None:intergenic 35.0%
ATACAGCATGGAGCATAATA+AGG + chr8_1:88460888-88460907 None:intergenic 35.0%
AACTGAATTCAGGATAACCA+CGG + chr8_1:88460989-88461008 None:intergenic 35.0%
TTTGGACGTTAACTGAATTC+AGG + chr8_1:88460999-88461018 None:intergenic 35.0%
CAAGCTTGTAGAGGATAATT+TGG + chr8_1:88461017-88461036 None:intergenic 35.0%
TCTAGAGGAAAACTAAGTGG+AGG - chr8_1:88459284-88459303 Msa1223840:three_prime_UTR 40.0%
AGGAAAACTAAGTGGAGGAA+TGG - chr8_1:88459289-88459308 Msa1223840:three_prime_UTR 40.0%
ATGGGAGCAATTGTAAACCT+AGG - chr8_1:88459317-88459336 Msa1223840:three_prime_UTR 40.0%
TCCCGTATTCAATCCTAATC+AGG - chr8_1:88459345-88459364 Msa1223840:three_prime_UTR 40.0%
AACTGAGTTTGTGCTGTAAG+CGG + chr8_1:88459436-88459455 None:intergenic 40.0%
CTCAGACAACAACAAAAGAG+AGG - chr8_1:88459487-88459506 Msa1223840:three_prime_UTR 40.0%
GACAACAACAAAAGAGAGGT+AGG - chr8_1:88459491-88459510 Msa1223840:three_prime_UTR 40.0%
TCAGATATGGGGGAATTAAG+TGG - chr8_1:88460146-88460165 Msa1223840:intron 40.0%
CAGATATGGGGGAATTAAGT+GGG - chr8_1:88460147-88460166 Msa1223840:intron 40.0%
! GCATTAGAAGGTGCATTAAG+TGG - chr8_1:88460250-88460269 Msa1223840:intron 40.0%
AATCAAAAGACGAGAAGAGC+TGG - chr8_1:88460306-88460325 Msa1223840:intron 40.0%
ATCAAAAGACGAGAAGAGCT+GGG - chr8_1:88460307-88460326 Msa1223840:intron 40.0%
ATCCATTGCTGTATGCACTT+CGG - chr8_1:88460621-88460640 Msa1223840:intron 40.0%
!! GAGAGCGTTGTAAGAAAATG+GGG - chr8_1:88460764-88460783 Msa1223840:intron 40.0%
!! ACACTATGCTCTAAAAGGGA+TGG + chr8_1:88460829-88460848 None:intergenic 40.0%
CTCCATGCTGTATGTTAGTA+AGG - chr8_1:88460895-88460914 Msa1223840:CDS 40.0%
ATTAATCACTCAGGTGCCAA+GGG + chr8_1:88460955-88460974 None:intergenic 40.0%
AATTAATCACTCAGGTGCCA+AGG + chr8_1:88460956-88460975 None:intergenic 40.0%
! GGCACCTGAGTGATTAATTT+TGG - chr8_1:88460957-88460976 Msa1223840:CDS 40.0%
ATCCTCTACAAGCTTGCAAT+TGG - chr8_1:88461021-88461040 Msa1223840:exon 40.0%
TACCAATTGCAAGCTTGTAG+AGG + chr8_1:88461026-88461045 None:intergenic 40.0%
CTACAAGCTTGCAATTGGTA+AGG - chr8_1:88461026-88461045 Msa1223840:exon 40.0%
TCTAGAGGAAAACTAAGTGG+AGG - chr8_1:88459284-88459303 Msa1223840:three_prime_UTR 40.0%
AGGAAAACTAAGTGGAGGAA+TGG - chr8_1:88459289-88459308 Msa1223840:three_prime_UTR 40.0%
ATGGGAGCAATTGTAAACCT+AGG - chr8_1:88459317-88459336 Msa1223840:three_prime_UTR 40.0%
TCCCGTATTCAATCCTAATC+AGG - chr8_1:88459345-88459364 Msa1223840:three_prime_UTR 40.0%
AACTGAGTTTGTGCTGTAAG+CGG + chr8_1:88459436-88459455 None:intergenic 40.0%
CTCAGACAACAACAAAAGAG+AGG - chr8_1:88459487-88459506 Msa1223840:three_prime_UTR 40.0%
GACAACAACAAAAGAGAGGT+AGG - chr8_1:88459491-88459510 Msa1223840:three_prime_UTR 40.0%
TCAGATATGGGGGAATTAAG+TGG - chr8_1:88460146-88460165 Msa1223840:intron 40.0%
CAGATATGGGGGAATTAAGT+GGG - chr8_1:88460147-88460166 Msa1223840:intron 40.0%
! GCATTAGAAGGTGCATTAAG+TGG - chr8_1:88460250-88460269 Msa1223840:intron 40.0%
AATCAAAAGACGAGAAGAGC+TGG - chr8_1:88460306-88460325 Msa1223840:intron 40.0%
ATCAAAAGACGAGAAGAGCT+GGG - chr8_1:88460307-88460326 Msa1223840:intron 40.0%
ATCCATTGCTGTATGCACTT+CGG - chr8_1:88460621-88460640 Msa1223840:intron 40.0%
!! GAGAGCGTTGTAAGAAAATG+GGG - chr8_1:88460764-88460783 Msa1223840:intron 40.0%
!! ACACTATGCTCTAAAAGGGA+TGG + chr8_1:88460829-88460848 None:intergenic 40.0%
CTCCATGCTGTATGTTAGTA+AGG - chr8_1:88460895-88460914 Msa1223840:CDS 40.0%
ATTAATCACTCAGGTGCCAA+GGG + chr8_1:88460955-88460974 None:intergenic 40.0%
AATTAATCACTCAGGTGCCA+AGG + chr8_1:88460956-88460975 None:intergenic 40.0%
! GGCACCTGAGTGATTAATTT+TGG - chr8_1:88460957-88460976 Msa1223840:CDS 40.0%
ATCCTCTACAAGCTTGCAAT+TGG - chr8_1:88461021-88461040 Msa1223840:exon 40.0%
TACCAATTGCAAGCTTGTAG+AGG + chr8_1:88461026-88461045 None:intergenic 40.0%
CTACAAGCTTGCAATTGGTA+AGG - chr8_1:88461026-88461045 Msa1223840:exon 40.0%
AAGTGGAGGAATGGAAAGCA+TGG - chr8_1:88459298-88459317 Msa1223840:three_prime_UTR 45.0%
! AGTGGAGGAATGGAAAGCAT+GGG - chr8_1:88459299-88459318 Msa1223840:three_prime_UTR 45.0%
GGAGCAATTGTAAACCTAGG+AGG - chr8_1:88459320-88459339 Msa1223840:three_prime_UTR 45.0%
CTGCTTAGTCGTCGTCAATT+GGG + chr8_1:88459384-88459403 None:intergenic 45.0%
!! GCGGCTCCATTTTTCATCAA+CGG + chr8_1:88459417-88459436 None:intergenic 45.0%
TCCATTGCTGTATGCACTTC+GGG - chr8_1:88460622-88460641 Msa1223840:intron 45.0%
! GGTGATCAGCCTGATTTTGA+TGG - chr8_1:88460701-88460720 Msa1223840:intron 45.0%
! GATGGCTCTTTGAAGAAGGA+AGG - chr8_1:88460719-88460738 Msa1223840:intron 45.0%
CGCCTTACTAACATACAGCA+TGG + chr8_1:88460900-88460919 None:intergenic 45.0%
TTAATCACTCAGGTGCCAAG+GGG + chr8_1:88460954-88460973 None:intergenic 45.0%
AAGTGGAGGAATGGAAAGCA+TGG - chr8_1:88459298-88459317 Msa1223840:three_prime_UTR 45.0%
! AGTGGAGGAATGGAAAGCAT+GGG - chr8_1:88459299-88459318 Msa1223840:three_prime_UTR 45.0%
GGAGCAATTGTAAACCTAGG+AGG - chr8_1:88459320-88459339 Msa1223840:three_prime_UTR 45.0%
CTGCTTAGTCGTCGTCAATT+GGG + chr8_1:88459384-88459403 None:intergenic 45.0%
!! GCGGCTCCATTTTTCATCAA+CGG + chr8_1:88459417-88459436 None:intergenic 45.0%
TCCATTGCTGTATGCACTTC+GGG - chr8_1:88460622-88460641 Msa1223840:intron 45.0%
! GGTGATCAGCCTGATTTTGA+TGG - chr8_1:88460701-88460720 Msa1223840:intron 45.0%
! GATGGCTCTTTGAAGAAGGA+AGG - chr8_1:88460719-88460738 Msa1223840:intron 45.0%
CGCCTTACTAACATACAGCA+TGG + chr8_1:88460900-88460919 None:intergenic 45.0%
TTAATCACTCAGGTGCCAAG+GGG + chr8_1:88460954-88460973 None:intergenic 45.0%
TTGAATACGGGACTCCTCCT+AGG + chr8_1:88459337-88459356 None:intergenic 50.0%
AACGATGGCGTGACCTGATT+AGG + chr8_1:88459361-88459380 None:intergenic 50.0%
TCGTCGTCAATTGGGAACGA+TGG + chr8_1:88459376-88459395 None:intergenic 50.0%
GCTGCTTAGTCGTCGTCAAT+TGG + chr8_1:88459385-88459404 None:intergenic 50.0%
AGAGGCAGGTGAATCTGCTT+CGG + chr8_1:88459466-88459485 None:intergenic 50.0%
GTTGTTGTCTGAGAAGAGGC+AGG + chr8_1:88459480-88459499 None:intergenic 50.0%
AAAAGACGAGAAGAGCTGGG+AGG - chr8_1:88460310-88460329 Msa1223840:intron 50.0%
TTTGGGTGGGGTAGATGGTT+TGG - chr8_1:88460367-88460386 Msa1223840:intron 50.0%
!! ATGGATTGATGATGGCAGCG+AGG + chr8_1:88460607-88460626 None:intergenic 50.0%
CCATTGCTGTATGCACTTCG+GGG - chr8_1:88460623-88460642 Msa1223840:intron 50.0%
! CGGGGAGTGAGAAATGGATT+TGG - chr8_1:88460641-88460660 Msa1223840:intron 50.0%
TTGAATACGGGACTCCTCCT+AGG + chr8_1:88459337-88459356 None:intergenic 50.0%
AACGATGGCGTGACCTGATT+AGG + chr8_1:88459361-88459380 None:intergenic 50.0%
TCGTCGTCAATTGGGAACGA+TGG + chr8_1:88459376-88459395 None:intergenic 50.0%
GCTGCTTAGTCGTCGTCAAT+TGG + chr8_1:88459385-88459404 None:intergenic 50.0%
AGAGGCAGGTGAATCTGCTT+CGG + chr8_1:88459466-88459485 None:intergenic 50.0%
GTTGTTGTCTGAGAAGAGGC+AGG + chr8_1:88459480-88459499 None:intergenic 50.0%
AAAAGACGAGAAGAGCTGGG+AGG - chr8_1:88460310-88460329 Msa1223840:intron 50.0%
TTTGGGTGGGGTAGATGGTT+TGG - chr8_1:88460367-88460386 Msa1223840:intron 50.0%
!! ATGGATTGATGATGGCAGCG+AGG + chr8_1:88460607-88460626 None:intergenic 50.0%
CCATTGCTGTATGCACTTCG+GGG - chr8_1:88460623-88460642 Msa1223840:intron 50.0%
! CGGGGAGTGAGAAATGGATT+TGG - chr8_1:88460641-88460660 Msa1223840:intron 50.0%
GCAGGTGAATCTGCTTCGGT+TGG + chr8_1:88459462-88459481 None:intergenic 55.0%
!! GTGCTGGAGGAGGTTGGTTT+GGG - chr8_1:88460350-88460369 Msa1223840:intron 55.0%
!! TGGAGGAGGTTGGTTTGGGT+GGG - chr8_1:88460354-88460373 Msa1223840:intron 55.0%
!! GTTGGTTTGGGTGGGGTAGA+TGG - chr8_1:88460362-88460381 Msa1223840:intron 55.0%
CCCCGAAGTGCATACAGCAA+TGG + chr8_1:88460626-88460645 None:intergenic 55.0%
GCACTTCGGGGAGTGAGAAA+TGG - chr8_1:88460635-88460654 Msa1223840:intron 55.0%
GCAGGTGAATCTGCTTCGGT+TGG + chr8_1:88459462-88459481 None:intergenic 55.0%
!! GTGCTGGAGGAGGTTGGTTT+GGG - chr8_1:88460350-88460369 Msa1223840:intron 55.0%
!! TGGAGGAGGTTGGTTTGGGT+GGG - chr8_1:88460354-88460373 Msa1223840:intron 55.0%
!! GTTGGTTTGGGTGGGGTAGA+TGG - chr8_1:88460362-88460381 Msa1223840:intron 55.0%
CCCCGAAGTGCATACAGCAA+TGG + chr8_1:88460626-88460645 None:intergenic 55.0%
GCACTTCGGGGAGTGAGAAA+TGG - chr8_1:88460635-88460654 Msa1223840:intron 55.0%
AGACGAGAAGAGCTGGGAGG+CGG - chr8_1:88460313-88460332 Msa1223840:intron 60.0%
! GGTGCTGGAGGAGGTTGGTT+TGG - chr8_1:88460349-88460368 Msa1223840:intron 60.0%
!! CTGGAGGAGGTTGGTTTGGG+TGG - chr8_1:88460353-88460372 Msa1223840:intron 60.0%
!! GGAGGAGGTTGGTTTGGGTG+GGG - chr8_1:88460355-88460374 Msa1223840:intron 60.0%
! GGTGGGGTAGATGGTTTGGC+TGG - chr8_1:88460371-88460390 Msa1223840:intron 60.0%
AGACGAGAAGAGCTGGGAGG+CGG - chr8_1:88460313-88460332 Msa1223840:intron 60.0%
! GGTGCTGGAGGAGGTTGGTT+TGG - chr8_1:88460349-88460368 Msa1223840:intron 60.0%
!! CTGGAGGAGGTTGGTTTGGG+TGG - chr8_1:88460353-88460372 Msa1223840:intron 60.0%
!! GGAGGAGGTTGGTTTGGGTG+GGG - chr8_1:88460355-88460374 Msa1223840:intron 60.0%
! GGTGGGGTAGATGGTTTGGC+TGG - chr8_1:88460371-88460390 Msa1223840:intron 60.0%
CGAGAAGAGCTGGGAGGCGG+AGG - chr8_1:88460316-88460335 Msa1223840:intron 70.0%
CTGGGAGGCGGAGGTGACAG+CGG - chr8_1:88460325-88460344 Msa1223840:intron 70.0%
CGAGAAGAGCTGGGAGGCGG+AGG - chr8_1:88460316-88460335 Msa1223840:intron 70.0%
CTGGGAGGCGGAGGTGACAG+CGG - chr8_1:88460325-88460344 Msa1223840:intron 70.0%
GGAGGCGGAGGTGACAGCGG+CGG - chr8_1:88460328-88460347 Msa1223840:intron 75.0%
GGAGGTGACAGCGGCGGTGC+TGG - chr8_1:88460334-88460353 Msa1223840:intron 75.0%
! GGTGACAGCGGCGGTGCTGG+AGG - chr8_1:88460337-88460356 Msa1223840:intron 75.0%
! GACAGCGGCGGTGCTGGAGG+AGG - chr8_1:88460340-88460359 Msa1223840:intron 75.0%
! GCGGCGGTGCTGGAGGAGGT+TGG - chr8_1:88460344-88460363 Msa1223840:intron 75.0%
GGAGGCGGAGGTGACAGCGG+CGG - chr8_1:88460328-88460347 Msa1223840:intron 75.0%
GGAGGTGACAGCGGCGGTGC+TGG - chr8_1:88460334-88460353 Msa1223840:intron 75.0%
! GGTGACAGCGGCGGTGCTGG+AGG - chr8_1:88460337-88460356 Msa1223840:intron 75.0%
! GACAGCGGCGGTGCTGGAGG+AGG - chr8_1:88460340-88460359 Msa1223840:intron 75.0%
! GCGGCGGTGCTGGAGGAGGT+TGG - chr8_1:88460344-88460363 Msa1223840:intron 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 88459250 88461097 88459250 ID=Msa1223840;Name=Msa1223840
chr8_1 mRNA 88459250 88461097 88459250 ID=Msa1223840-mRNA-1;Parent=Msa1223840;Name=Msa1223840-mRNA-1;_AED=0.01;_eAED=0.01;_QI=58|1|1|1|1|1|3|301|216
chr8_1 exon 88459250 88459772 88459250 ID=Msa1223840-mRNA-1:exon:32106;Parent=Msa1223840-mRNA-1
chr8_1 exon 88459885 88460112 88459885 ID=Msa1223840-mRNA-1:exon:32105;Parent=Msa1223840-mRNA-1
chr8_1 exon 88460839 88461097 88460839 ID=Msa1223840-mRNA-1:exon:32104;Parent=Msa1223840-mRNA-1
chr8_1 five_prime_UTR 88461040 88461097 88461040 ID=Msa1223840-mRNA-1:five_prime_utr;Parent=Msa1223840-mRNA-1
chr8_1 CDS 88460839 88461039 88460839 ID=Msa1223840-mRNA-1:cds;Parent=Msa1223840-mRNA-1
chr8_1 CDS 88459885 88460112 88459885 ID=Msa1223840-mRNA-1:cds;Parent=Msa1223840-mRNA-1
chr8_1 CDS 88459551 88459772 88459551 ID=Msa1223840-mRNA-1:cds;Parent=Msa1223840-mRNA-1
chr8_1 three_prime_UTR 88459250 88459550 88459250 ID=Msa1223840-mRNA-1:three_prime_utr;Parent=Msa1223840-mRNA-1
Gene Sequence

>Msa1223840

ATGGAAAGCATGGGAGCAATTGTAAACCTAGGAGGAGTCCCGTATTCAATCCTAATCAGGTCACGCCATCGTTCCCAATTGACGACGACTAAGCAGCTTGACTCTTCCGTTGATGAAAAATGGAGCCGCTTACAGCACAAACTCAGTTTCACCAACCGAAGCAGATTCACCTGCCTCTTCTCAGACAACAACAAAAGAGAGGATCAAGCTAGAAAAGCATTAGAAGGTGCATTAAGTGGGAAGAAAATTGAATTTGACAAGTGGGACAAAGAAATCAAAAGACGAGAAGAGCTGGGAGGCGGAGGTGACAGCGGCGGTGCTGGAGGAGGTTGGTTTGGGTGGGGTAGATGGTTTGGCTGGTCTAATGATGATAATTTTTGGCAAGAAGCAAAACAAGCTAGTCTTACTATACTTGGCATCGTTCTCATATATATCCTAGTTGCAAAAGGTGATTTGATCCTCGCTGCCATCATCAATCCATTGCTGTATGCACTTCGGGGAGTGAGAAATGGATTTGGTCTCGCAACATCACAAGTCTTGAAAAATACTTCTAACGGTGATCAGCCTGATTTTGATGGCTCTTTGAAGAAGGAAGGCTACAAAAGTGCTTCTGCTAAAGAGAGCGTTGTAAGAAAATGGGGTAGTGATTAG

Protein sequence

>Msa1223840

MESMGAIVNLGGVPYSILIRSRHRSQLTTTKQLDSSVDEKWSRLQHKLSFTNRSRFTCLFSDNNKREDQARKALEGALSGKKIEFDKWDKEIKRREELGGGGDSGGAGGGWFGWGRWFGWSNDDNFWQEAKQASLTILGIVLIYILVAKGDLILAAIINPLLYALRGVRNGFGLATSQVLKNTSNGDQPDFDGSLKKEGYKSASAKESVVRKWGSD*