Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0512350 | XP_003601522.1 | 99.027 | 411 | 4 | 0 | 1 | 411 | 1 | 411 | 0.0 | 843 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0512350 | sp|Q9SSE5|COL9_ARATH | 52.955 | 423 | 136 | 10 | 1 | 411 | 1 | 372 | 3.99e-141 | 410 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0512350 | G7J8U1 | 99.027 | 411 | 4 | 0 | 1 | 411 | 1 | 411 | 0.0 | 843 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0512350 | TF | C2C2-CO-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001810 | Msa0512350 | 0.908081 | 2.522181e-81 | -8.615850e-47 |
| Msa0369210 | Msa0512350 | 0.819805 | 9.574896e-53 | -8.615850e-47 |
| Msa0387830 | Msa0512350 | 0.942988 | 2.701013e-102 | -8.615850e-47 |
| Msa0420790 | Msa0512350 | 0.930855 | 8.904674e-94 | -8.615850e-47 |
| Msa0438470 | Msa0512350 | 0.980874 | 3.082713e-151 | -8.615850e-47 |
| Msa0512350 | Msa0574910 | 0.906427 | 1.501075e-80 | -8.615850e-47 |
| Msa0512350 | Msa0605640 | 0.807646 | 4.565352e-50 | -8.615850e-47 |
| Msa0512350 | Msa0699370 | 0.809421 | 1.908229e-50 | -8.615850e-47 |
| Msa0512350 | Msa0837930 | -0.801986 | 6.951099e-49 | -8.615850e-47 |
| Msa0512350 | Msa0867720 | 0.823388 | 1.423119e-53 | -8.615850e-47 |
| Msa0512350 | Msa0930760 | 0.912539 | 1.734211e-83 | -8.615850e-47 |
| Msa0512350 | Msa1039820 | 0.808159 | 3.551262e-50 | -8.615850e-47 |
| Msa0512350 | Msa1128260 | 0.813803 | 2.127450e-51 | -8.615850e-47 |
| Msa0512350 | Msa1130820 | -0.851873 | 6.682856e-61 | -8.615850e-47 |
| Msa0512350 | Msa1212190 | 0.857689 | 1.375388e-62 | -8.615850e-47 |
| Msa0512350 | Msa1212270 | 0.864493 | 1.168468e-64 | -8.615850e-47 |
| Msa0512350 | Msa1259910 | 0.859690 | 3.474468e-63 | -8.615850e-47 |
| Msa0512350 | Msa1406670 | -0.854023 | 1.621483e-61 | -8.615850e-47 |
| Msa0512350 | Msa1448870 | -0.851515 | 8.439461e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0512350 | MtrunA17_Chr3g0120711 | 99.027 | 411 | 4 | 0 | 1 | 411 | 1 | 411 | 0.0 | 843 |
| Msa0512350 | MtrunA17_Chr5g0429341 | 68.675 | 415 | 119 | 7 | 1 | 410 | 1 | 409 | 0.0 | 511 |
| Msa0512350 | MtrunA17_Chr2g0322941 | 51.818 | 110 | 52 | 1 | 1 | 110 | 40 | 148 | 6.73e-33 | 124 |
| Msa0512350 | MtrunA17_Chr7g0268691 | 50.000 | 100 | 50 | 0 | 5 | 104 | 20 | 119 | 2.14e-29 | 117 |
| Msa0512350 | MtrunA17_Chr7g0268691 | 62.500 | 48 | 18 | 0 | 348 | 395 | 322 | 369 | 7.42e-12 | 66.6 |
| Msa0512350 | MtrunA17_Chr1g0209071 | 44.860 | 107 | 57 | 1 | 1 | 107 | 1 | 105 | 3.83e-25 | 105 |
| Msa0512350 | MtrunA17_Chr2g0322951 | 49.550 | 111 | 40 | 3 | 303 | 405 | 41 | 143 | 1.38e-24 | 98.6 |
| Msa0512350 | MtrunA17_Chr7g0251781 | 35.971 | 139 | 81 | 2 | 1 | 132 | 1 | 138 | 8.60e-22 | 96.3 |
| Msa0512350 | MtrunA17_Chr7g0251781 | 56.061 | 66 | 29 | 0 | 331 | 396 | 318 | 383 | 1.37e-14 | 75.1 |
| Msa0512350 | MtrunA17_Chr1g0150471 | 44.048 | 84 | 46 | 1 | 4 | 86 | 5 | 88 | 3.26e-17 | 82.0 |
| Msa0512350 | MtrunA17_Chr3g0136701 | 39.216 | 102 | 61 | 1 | 4 | 104 | 5 | 106 | 3.31e-16 | 78.6 |
| Msa0512350 | MtrunA17_Chr3g0136701 | 45.833 | 72 | 36 | 1 | 333 | 401 | 208 | 279 | 3.40e-11 | 63.9 |
| Msa0512350 | MtrunA17_Chr4g0072871 | 38.889 | 90 | 54 | 1 | 4 | 92 | 21 | 110 | 3.25e-15 | 76.6 |
| Msa0512350 | MtrunA17_Chr7g0220721 | 41.758 | 91 | 52 | 1 | 5 | 94 | 26 | 116 | 1.25e-14 | 75.1 |
| Msa0512350 | MtrunA17_Chr4g0033641 | 38.542 | 96 | 49 | 2 | 1 | 86 | 1 | 96 | 8.60e-14 | 70.9 |
| Msa0512350 | MtrunA17_Chr5g0405151 | 38.095 | 84 | 44 | 1 | 1 | 76 | 1 | 84 | 1.60e-11 | 62.8 |
| Msa0512350 | MtrunA17_Chr1g0155811 | 34.021 | 97 | 53 | 2 | 1 | 86 | 1 | 97 | 2.94e-11 | 63.5 |
| Msa0512350 | MtrunA17_Chr4g0035651 | 35.052 | 97 | 52 | 2 | 1 | 86 | 1 | 97 | 3.63e-11 | 62.8 |
| Msa0512350 | MtrunA17_Chr3g0142221 | 33.673 | 98 | 53 | 2 | 1 | 86 | 1 | 98 | 6.15e-11 | 62.0 |
| Msa0512350 | MtrunA17_Chr2g0329511 | 35.417 | 96 | 52 | 2 | 1 | 86 | 1 | 96 | 8.87e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0512350 | AT3G07650.3 | 52.955 | 423 | 136 | 10 | 1 | 411 | 1 | 372 | 4.05e-142 | 410 |
| Msa0512350 | AT3G07650.2 | 52.955 | 423 | 136 | 10 | 1 | 411 | 1 | 372 | 4.05e-142 | 410 |
| Msa0512350 | AT3G07650.4 | 52.955 | 423 | 136 | 10 | 1 | 411 | 1 | 372 | 4.05e-142 | 410 |
| Msa0512350 | AT3G07650.1 | 52.955 | 423 | 136 | 10 | 1 | 411 | 1 | 372 | 4.05e-142 | 410 |
| Msa0512350 | AT5G48250.1 | 53.699 | 419 | 140 | 10 | 1 | 411 | 1 | 373 | 6.83e-140 | 404 |
| Msa0512350 | AT3G21880.3 | 34.063 | 411 | 210 | 11 | 5 | 408 | 9 | 365 | 2.12e-61 | 203 |
| Msa0512350 | AT3G21880.2 | 34.063 | 411 | 210 | 11 | 5 | 408 | 9 | 365 | 2.12e-61 | 203 |
| Msa0512350 | AT3G21880.1 | 34.063 | 411 | 210 | 11 | 5 | 408 | 5 | 361 | 2.14e-61 | 203 |
| Msa0512350 | AT4G15250.1 | 53.153 | 111 | 50 | 2 | 5 | 115 | 5 | 113 | 7.23e-34 | 129 |
| Msa0512350 | AT4G15250.1 | 51.020 | 98 | 45 | 1 | 307 | 404 | 232 | 326 | 8.54e-20 | 90.1 |
| Msa0512350 | AT2G33500.2 | 47.170 | 106 | 55 | 1 | 5 | 109 | 12 | 117 | 1.00e-29 | 119 |
| Msa0512350 | AT2G33500.2 | 60.784 | 51 | 20 | 0 | 346 | 396 | 348 | 398 | 1.38e-12 | 69.3 |
| Msa0512350 | AT2G33500.1 | 47.170 | 106 | 55 | 1 | 5 | 109 | 12 | 117 | 1.04e-29 | 119 |
| Msa0512350 | AT2G33500.1 | 60.784 | 51 | 20 | 0 | 346 | 396 | 349 | 399 | 1.40e-12 | 69.3 |
| Msa0512350 | AT1G68190.1 | 46.847 | 111 | 57 | 2 | 1 | 110 | 10 | 119 | 2.30e-29 | 117 |
| Msa0512350 | AT1G68190.3 | 46.847 | 111 | 57 | 2 | 1 | 110 | 10 | 119 | 2.30e-29 | 117 |
| Msa0512350 | AT1G68190.2 | 46.847 | 111 | 57 | 2 | 1 | 110 | 39 | 148 | 4.30e-29 | 117 |
| Msa0512350 | AT1G28050.1 | 39.041 | 146 | 86 | 2 | 5 | 147 | 9 | 154 | 1.67e-28 | 116 |
| Msa0512350 | AT1G28050.1 | 61.111 | 54 | 21 | 0 | 346 | 399 | 377 | 430 | 4.34e-13 | 70.9 |
| Msa0512350 | AT2G47890.2 | 35.795 | 176 | 103 | 4 | 4 | 177 | 12 | 179 | 7.09e-26 | 105 |
| Msa0512350 | AT2G47890.3 | 36.420 | 162 | 95 | 3 | 4 | 165 | 12 | 165 | 2.63e-25 | 105 |
| Msa0512350 | AT2G47890.1 | 36.420 | 162 | 95 | 3 | 4 | 165 | 12 | 165 | 3.68e-25 | 105 |
| Msa0512350 | AT5G24930.1 | 43.333 | 90 | 50 | 1 | 4 | 92 | 5 | 94 | 3.99e-17 | 82.8 |
| Msa0512350 | AT5G24930.1 | 55.769 | 52 | 23 | 0 | 344 | 395 | 285 | 336 | 3.31e-11 | 64.7 |
| Msa0512350 | AT2G24790.1 | 42.222 | 90 | 51 | 1 | 4 | 92 | 7 | 96 | 6.61e-16 | 78.2 |
| Msa0512350 | AT2G24790.1 | 50.877 | 57 | 28 | 0 | 347 | 403 | 222 | 278 | 5.04e-11 | 63.5 |
| Msa0512350 | AT2G24790.2 | 42.222 | 90 | 51 | 1 | 4 | 92 | 7 | 96 | 6.70e-16 | 76.6 |
| Msa0512350 | AT5G15840.1 | 43.956 | 91 | 50 | 1 | 5 | 94 | 20 | 110 | 8.59e-15 | 75.9 |
| Msa0512350 | AT5G15840.2 | 43.956 | 91 | 50 | 1 | 5 | 94 | 20 | 110 | 1.31e-14 | 73.9 |
| Msa0512350 | AT5G15850.1 | 44.186 | 86 | 47 | 1 | 5 | 89 | 12 | 97 | 1.98e-14 | 74.7 |
| Msa0512350 | AT3G02380.1 | 40.000 | 100 | 53 | 2 | 5 | 97 | 16 | 115 | 1.23e-13 | 72.0 |
| Msa0512350 | AT3G02380.1 | 62.500 | 48 | 18 | 0 | 348 | 395 | 272 | 319 | 5.36e-12 | 67.0 |
| Msa0512350 | AT5G57660.1 | 30.216 | 139 | 92 | 2 | 5 | 142 | 22 | 156 | 1.87e-12 | 68.6 |
| Msa0512350 | AT2G31380.1 | 36.458 | 96 | 51 | 2 | 1 | 86 | 1 | 96 | 1.95e-12 | 67.0 |
| Msa0512350 | AT1G06040.2 | 37.500 | 96 | 50 | 2 | 1 | 86 | 1 | 96 | 2.96e-12 | 65.5 |
| Msa0512350 | AT1G06040.1 | 37.500 | 96 | 50 | 2 | 1 | 86 | 1 | 96 | 3.78e-12 | 66.2 |
| Msa0512350 | AT2G21320.1 | 39.286 | 84 | 43 | 1 | 1 | 76 | 1 | 84 | 5.13e-11 | 61.6 |
| Msa0512350 | AT1G75540.1 | 34.343 | 99 | 52 | 2 | 1 | 86 | 1 | 99 | 8.78e-11 | 63.2 |
| Msa0512350 | AT4G38960.1 | 36.905 | 84 | 45 | 1 | 1 | 76 | 1 | 84 | 9.55e-11 | 61.2 |
| Msa0512350 | AT4G38960.6 | 36.905 | 84 | 45 | 1 | 1 | 76 | 1 | 84 | 9.55e-11 | 61.2 |
Find 90 sgRNAs with CRISPR-Local
Find 288 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGGATTTAACAGTTTATT+TGG | 0.095234 | 3_4:+62109798 | Msa0512350:CDS |
| GTGGATTTAACAGTTTATTT+GGG | 0.284402 | 3_4:+62109799 | Msa0512350:CDS |
| CGCGGTTCTTTGCTTGATTC+GGG | 0.298118 | 3_4:-62109353 | None:intergenic |
| AGCTACTGATCTACCTGATT+TGG | 0.310422 | 3_4:+62109301 | Msa0512350:CDS |
| TCATCATCATCACTTGCTTC+AGG | 0.322324 | 3_4:-62109669 | None:intergenic |
| ACGCGGTTCTTTGCTTGATT+CGG | 0.327280 | 3_4:-62109354 | None:intergenic |
| CGGCCGAACTTTCTTCGATA+TGG | 0.346888 | 3_4:+62109150 | Msa0512350:CDS |
| GGATGAAATGGATATAAATA+TGG | 0.347846 | 3_4:+62109716 | Msa0512350:CDS |
| CGATTTCGATATGGATGAAA+TGG | 0.355447 | 3_4:+62109704 | Msa0512350:CDS |
| TACCTTTGGTACACATTCAT+TGG | 0.361210 | 3_4:-62109402 | None:intergenic |
| GATGCTGCAGTGCTGCATGC+TGG | 0.368884 | 3_4:-62110300 | None:intergenic |
| TATGTTCAGGGTTCATCAAT+TGG | 0.370264 | 3_4:+62110258 | Msa0512350:intron |
| ACCGGCCCTTCACGCGCCTT+CGG | 0.385614 | 3_4:-62110944 | None:intergenic |
| GATCGTTTGCCTCTTATGAT+TGG | 0.395417 | 3_4:-62109102 | None:intergenic |
| CACTTTGTCAGAATTGTGAT+TGG | 0.398736 | 3_4:+62109054 | Msa0512350:CDS |
| TTTGCTTGATTCGGGCTTTG+AGG | 0.401934 | 3_4:-62109345 | None:intergenic |
| ATGCAGTTCACAACCTGCTT+TGG | 0.404101 | 3_4:+62109007 | Msa0512350:CDS |
| GTTCACAACCTGCTTTGGTT+AGG | 0.412214 | 3_4:+62109012 | Msa0512350:CDS |
| CATTCATTGGTAGATCCATC+TGG | 0.421154 | 3_4:-62109389 | None:intergenic |
| AGCTTCTTCAATGCTTCTCA+TGG | 0.422785 | 3_4:+62110449 | Msa0512350:CDS |
| AGCTTCTCGTTTGGCTCAAA+GGG | 0.426520 | 3_4:-62110998 | None:intergenic |
| CTACATCTTCCAATCATAAG+AGG | 0.437225 | 3_4:+62109093 | Msa0512350:CDS |
| CAGAAAAGGAAAGGCTCGAT+TGG | 0.437549 | 3_4:-62110383 | None:intergenic |
| GCTCAAAGGGTCATAATCAT+AGG | 0.437780 | 3_4:-62110985 | None:intergenic |
| AGCATTAGCATCTTGACAAT+TGG | 0.444014 | 3_4:-62109847 | None:intergenic |
| TGTCAGAATTGTGATTGGTT+AGG | 0.444655 | 3_4:+62109059 | Msa0512350:CDS |
| ACACTCAGTAGCTTCTCGTT+TGG | 0.446801 | 3_4:-62111007 | None:intergenic |
| GCGAAAGACTTATCCAAATC+AGG | 0.451210 | 3_4:-62109314 | None:intergenic |
| TAGCTTCTCGTTTGGCTCAA+AGG | 0.451884 | 3_4:-62110999 | None:intergenic |
| TGTAGTTGTAGCTCATTCTC+AGG | 0.468722 | 3_4:-62110498 | None:intergenic |
| CATCATCATCACTTGCTTCA+GGG | 0.475636 | 3_4:-62109668 | None:intergenic |
| TCCGAAGGCGCGTGAAGGGC+CGG | 0.483385 | 3_4:+62110943 | Msa0512350:CDS |
| TTTGCAGTAATACAAAGATT+CGG | 0.484517 | 3_4:-62110354 | None:intergenic |
| GGGGCAAAAGCCATGTCTGC+TGG | 0.484909 | 3_4:+62109819 | Msa0512350:CDS |
| TAATGAGAATAGGAGTGCTT+GGG | 0.485947 | 3_4:+62109241 | Msa0512350:CDS |
| TTCTCATGGGAGAACCTCCT+TGG | 0.487490 | 3_4:+62110463 | Msa0512350:CDS |
| TCATGAGTATTAATGAGAAT+AGG | 0.491713 | 3_4:+62109231 | Msa0512350:CDS |
| TCTGTATGGCGATTTCGATA+TGG | 0.492638 | 3_4:+62109695 | Msa0512350:CDS |
| AGACCATATCGAAGAAAGTT+CGG | 0.494435 | 3_4:-62109153 | None:intergenic |
| GCTTCAGGGCAATTTGTAGC+AGG | 0.495109 | 3_4:-62109654 | None:intergenic |
| AGAAAAGGAAAGGCTCGATT+GGG | 0.501130 | 3_4:-62110382 | None:intergenic |
| TTAATGAGAATAGGAGTGCT+TGG | 0.501567 | 3_4:+62109240 | Msa0512350:CDS |
| ATTAATGAAGACGGTGGTGC+TGG | 0.505210 | 3_4:+62110408 | Msa0512350:CDS |
| TTGTGGAGGTCAACGGTCCA+TGG | 0.508443 | 3_4:+62108878 | Msa0512350:CDS |
| GTCTTCATTAATACCAGAAA+AGG | 0.513355 | 3_4:-62110397 | None:intergenic |
| ATATGCCTCTCGCAAGGAAA+GGG | 0.514733 | 3_4:+62110914 | Msa0512350:CDS |
| CCCTTGCTCGAAGACATTCA+AGG | 0.516832 | 3_4:+62108967 | Msa0512350:CDS |
| TGATGTCCGAAGGCGCGTGA+AGG | 0.519956 | 3_4:+62110938 | Msa0512350:CDS |
| GTCATAATCATAGGCCTCGC+CGG | 0.520189 | 3_4:-62110976 | None:intergenic |
| CAAACGATCAATTGCTACTC+AGG | 0.524349 | 3_4:+62109116 | Msa0512350:CDS |
| CCTCGCCGGCTTTAACAAAC+CGG | 0.526175 | 3_4:-62110962 | None:intergenic |
| ACTACATGTGAGCAAGAACT+AGG | 0.526382 | 3_4:+62109206 | Msa0512350:CDS |
| TCCTTGAATGTCTTCGAGCA+AGG | 0.533062 | 3_4:-62108968 | None:intergenic |
| TTCGGGCTTTGAGGATGTAC+CGG | 0.533096 | 3_4:-62109336 | None:intergenic |
| GATGTCCGAAGGCGCGTGAA+GGG | 0.533693 | 3_4:+62110939 | Msa0512350:CDS |
| AAGGGCCGGTTTGTTAAAGC+CGG | 0.538044 | 3_4:+62110957 | Msa0512350:CDS |
| CGTATGCTCGACCGCCCAGA+TGG | 0.548257 | 3_4:+62109374 | Msa0512350:CDS |
| AATTGTGATTGGTTAGGTCA+TGG | 0.558365 | 3_4:+62109065 | Msa0512350:CDS |
| CTACTCAGGTTGCCCTTCGT+CGG | 0.563208 | 3_4:+62109130 | Msa0512350:CDS |
| GCTTCTTCAATGCTTCTCAT+GGG | 0.566506 | 3_4:+62110450 | Msa0512350:CDS |
| TCAGAACACCTAACCAAAGC+AGG | 0.567607 | 3_4:-62109020 | None:intergenic |
| ATTGGAATCTCCAGCAGACA+TGG | 0.567887 | 3_4:-62109829 | None:intergenic |
| AAGAAAGTTCGGCCGACGAA+GGG | 0.569995 | 3_4:-62109142 | None:intergenic |
| CATGTAGTTTCACTCAGAGA+AGG | 0.576596 | 3_4:-62109191 | None:intergenic |
| TAGTGCTGTTATGCGATACA+AGG | 0.579883 | 3_4:+62110536 | Msa0512350:CDS |
| TACCAATGAATGTGTACCAA+AGG | 0.580738 | 3_4:+62109400 | Msa0512350:CDS |
| CCTTGAATGTCTTCGAGCAA+GGG | 0.583830 | 3_4:-62108967 | None:intergenic |
| GATATGCCTCTCGCAAGGAA+AGG | 0.583865 | 3_4:+62110913 | Msa0512350:CDS |
| TGGATTTAACAGTTTATTTG+GGG | 0.588596 | 3_4:+62109800 | Msa0512350:CDS |
| GATTTGGATAAGTCTTTCGC+CGG | 0.589605 | 3_4:+62109317 | Msa0512350:CDS |
| CATTAATACCAGAAAAGGAA+AGG | 0.592524 | 3_4:-62110392 | None:intergenic |
| GAAGAAAGTTCGGCCGACGA+AGG | 0.593920 | 3_4:-62109143 | None:intergenic |
| AGGAAAGGGCTGATGTCCGA+AGG | 0.595717 | 3_4:+62110928 | Msa0512350:CDS |
| ATGTAGTTTCACTCAGAGAA+GGG | 0.599442 | 3_4:-62109190 | None:intergenic |
| ATCAGCCCTTTCCTTGCGAG+AGG | 0.604664 | 3_4:-62110919 | None:intergenic |
| ATTCATTGGTAGATCCATCT+GGG | 0.610627 | 3_4:-62109388 | None:intergenic |
| AAAGCTCTTCAGAATGAGTG+AGG | 0.617795 | 3_4:-62109767 | None:intergenic |
| GCTGGAGACTATCAAGATTG+TGG | 0.619737 | 3_4:+62110426 | Msa0512350:CDS |
| AGTGAGATATGCCTCTCGCA+AGG | 0.625277 | 3_4:+62110908 | Msa0512350:CDS |
| TCTGGTATTAATGAAGACGG+TGG | 0.629157 | 3_4:+62110402 | Msa0512350:CDS |
| CCGGTTTGTTAAAGCCGGCG+AGG | 0.638136 | 3_4:+62110962 | Msa0512350:CDS |
| TCAAGATGCTAATGCTGCTG+AGG | 0.640291 | 3_4:+62109854 | Msa0512350:CDS |
| GGTGTACTGTCGCTCAGATG+CGG | 0.641096 | 3_4:+62108899 | Msa0512350:CDS |
| TCTGGGCGGTCGAGCATACG+CGG | 0.641340 | 3_4:-62109371 | None:intergenic |
| TCAGGACAAGTGTTTAACCA+AGG | 0.666255 | 3_4:-62110480 | None:intergenic |
| AAGCTCTTCAGAATGAGTGA+GGG | 0.667176 | 3_4:-62109766 | None:intergenic |
| GGACAAGTGTTTAACCAAGG+AGG | 0.698616 | 3_4:-62110477 | None:intergenic |
| ATCGCATAACAGCACTACAG+CGG | 0.703445 | 3_4:-62110530 | None:intergenic |
| ATCTGAGCGACAGTACACCA+TGG | 0.755518 | 3_4:-62108895 | None:intergenic |
| CATTGGTAGATCCATCTGGG+CGG | 0.761162 | 3_4:-62109385 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTAATTTGATAAAAATGTA+AGG | - | chr3_4:62109598-62109617 | None:intergenic | 15.0% |
| !!! | ATTGATTGTTATTATCTTTT+AGG | + | chr3_4:62110874-62110893 | Msa0512350:intron | 15.0% |
| !! | TCTAATTTGATAAAAATGTA+AGG | - | chr3_4:62109598-62109617 | None:intergenic | 15.0% |
| !!! | ATTGATTGTTATTATCTTTT+AGG | + | chr3_4:62110874-62110893 | Msa0512350:intron | 15.0% |
| !!! | AATAAGTTGAAAACAACTTA+TGG | - | chr3_4:62110021-62110040 | None:intergenic | 20.0% |
| !!! | TACATCTAATTTTTATGTTC+AGG | + | chr3_4:62110245-62110264 | Msa0512350:intron | 20.0% |
| !!! | ACATCTAATTTTTATGTTCA+GGG | + | chr3_4:62110246-62110265 | Msa0512350:intron | 20.0% |
| !!! | AATAAGTTGAAAACAACTTA+TGG | - | chr3_4:62110021-62110040 | None:intergenic | 20.0% |
| !!! | TACATCTAATTTTTATGTTC+AGG | + | chr3_4:62110245-62110264 | Msa0512350:intron | 20.0% |
| !!! | ACATCTAATTTTTATGTTCA+GGG | + | chr3_4:62110246-62110265 | Msa0512350:intron | 20.0% |
| ! | TCATGAGTATTAATGAGAAT+AGG | + | chr3_4:62109231-62109250 | Msa0512350:CDS | 25.0% |
| ! | AACATTCAGATATATACCTT+TGG | - | chr3_4:62109419-62109438 | None:intergenic | 25.0% |
| ! | GGATGAAATGGATATAAATA+TGG | + | chr3_4:62109716-62109735 | Msa0512350:CDS | 25.0% |
| ! | GTGGATTTAACAGTTTATTT+GGG | + | chr3_4:62109799-62109818 | Msa0512350:CDS | 25.0% |
| ! | TGGATTTAACAGTTTATTTG+GGG | + | chr3_4:62109800-62109819 | Msa0512350:CDS | 25.0% |
| ! | TTATATATTAGCATAAGCAC+TGG | + | chr3_4:62109952-62109971 | Msa0512350:intron | 25.0% |
| ! | ATACAAATTGTTTACACCTT+CGG | + | chr3_4:62110195-62110214 | Msa0512350:intron | 25.0% |
| ! | TTTGCAGTAATACAAAGATT+CGG | - | chr3_4:62110357-62110376 | None:intergenic | 25.0% |
| !!! | TTTTCTGGTATTAATGAAGA+CGG | + | chr3_4:62110399-62110418 | Msa0512350:CDS | 25.0% |
| ! | ACTTTCCCTTAAAAGATATA+AGG | + | chr3_4:62110691-62110710 | Msa0512350:intron | 25.0% |
| !! | TCAGACCTTATATCTTTTAA+GGG | - | chr3_4:62110699-62110718 | None:intergenic | 25.0% |
| !! | TTCAGACCTTATATCTTTTA+AGG | - | chr3_4:62110700-62110719 | None:intergenic | 25.0% |
| ! | GGTAACATGATAATCAAATT+AGG | - | chr3_4:62110775-62110794 | None:intergenic | 25.0% |
| ! | TCATGAGTATTAATGAGAAT+AGG | + | chr3_4:62109231-62109250 | Msa0512350:CDS | 25.0% |
| ! | AACATTCAGATATATACCTT+TGG | - | chr3_4:62109419-62109438 | None:intergenic | 25.0% |
| ! | GGATGAAATGGATATAAATA+TGG | + | chr3_4:62109716-62109735 | Msa0512350:CDS | 25.0% |
| ! | GTGGATTTAACAGTTTATTT+GGG | + | chr3_4:62109799-62109818 | Msa0512350:CDS | 25.0% |
| ! | TGGATTTAACAGTTTATTTG+GGG | + | chr3_4:62109800-62109819 | Msa0512350:CDS | 25.0% |
| ! | TTATATATTAGCATAAGCAC+TGG | + | chr3_4:62109952-62109971 | Msa0512350:intron | 25.0% |
| ! | ATACAAATTGTTTACACCTT+CGG | + | chr3_4:62110195-62110214 | Msa0512350:intron | 25.0% |
| ! | TTTGCAGTAATACAAAGATT+CGG | - | chr3_4:62110357-62110376 | None:intergenic | 25.0% |
| !!! | TTTTCTGGTATTAATGAAGA+CGG | + | chr3_4:62110399-62110418 | Msa0512350:CDS | 25.0% |
| ! | ACTTTCCCTTAAAAGATATA+AGG | + | chr3_4:62110691-62110710 | Msa0512350:intron | 25.0% |
| !! | TCAGACCTTATATCTTTTAA+GGG | - | chr3_4:62110699-62110718 | None:intergenic | 25.0% |
| !! | TTCAGACCTTATATCTTTTA+AGG | - | chr3_4:62110700-62110719 | None:intergenic | 25.0% |
| ! | GGTAACATGATAATCAAATT+AGG | - | chr3_4:62110775-62110794 | None:intergenic | 25.0% |
| ! | GGTTACATATGTGATTTTTG+TGG | + | chr3_4:62108861-62108880 | Msa0512350:CDS | 30.0% |
| ! | TACATATGTGATTTTTGTGG+AGG | + | chr3_4:62108864-62108883 | Msa0512350:CDS | 30.0% |
| ATGATTAAGCTATTGCTCTA+TGG | - | chr3_4:62109493-62109512 | None:intergenic | 30.0% | |
| TAGAGCAATAGCTTAATCAT+TGG | + | chr3_4:62109493-62109512 | Msa0512350:intron | 30.0% | |
| GGATTTCAATTATAAACCTC+AGG | - | chr3_4:62109577-62109596 | None:intergenic | 30.0% | |
| !! | TCTGAAGAGCTTTTTGAAAA+TGG | + | chr3_4:62109777-62109796 | Msa0512350:CDS | 30.0% |
| ! | GGTGGATTTAACAGTTTATT+TGG | + | chr3_4:62109798-62109817 | Msa0512350:CDS | 30.0% |
| ACGCAATCAAATGATAGAAA+AGG | - | chr3_4:62109918-62109937 | None:intergenic | 30.0% | |
| TTTCTATCATTTGATTGCGT+TGG | + | chr3_4:62109918-62109937 | Msa0512350:intron | 30.0% | |
| ! | CTGTTTTCATAAGCTTATCT+TGG | - | chr3_4:62110056-62110075 | None:intergenic | 30.0% |
| !! | TTCAGTTTTAGTGCTCAATA+TGG | - | chr3_4:62110334-62110353 | None:intergenic | 30.0% |
| CATTAATACCAGAAAAGGAA+AGG | - | chr3_4:62110395-62110414 | None:intergenic | 30.0% | |
| GTCTTCATTAATACCAGAAA+AGG | - | chr3_4:62110400-62110419 | None:intergenic | 30.0% | |
| AGAGGAAAAACACATTCAAT+AGG | - | chr3_4:62110634-62110653 | None:intergenic | 30.0% | |
| ! | GCGTTTTTCATTCAAAAAAG+AGG | - | chr3_4:62110652-62110671 | None:intergenic | 30.0% |
| TGAAAAGAGTTTCTAAACAG+TGG | + | chr3_4:62110716-62110735 | Msa0512350:intron | 30.0% | |
| ! | GGTTACATATGTGATTTTTG+TGG | + | chr3_4:62108861-62108880 | Msa0512350:CDS | 30.0% |
| ! | TACATATGTGATTTTTGTGG+AGG | + | chr3_4:62108864-62108883 | Msa0512350:CDS | 30.0% |
| ATGATTAAGCTATTGCTCTA+TGG | - | chr3_4:62109493-62109512 | None:intergenic | 30.0% | |
| TAGAGCAATAGCTTAATCAT+TGG | + | chr3_4:62109493-62109512 | Msa0512350:intron | 30.0% | |
| GGATTTCAATTATAAACCTC+AGG | - | chr3_4:62109577-62109596 | None:intergenic | 30.0% | |
| !! | TCTGAAGAGCTTTTTGAAAA+TGG | + | chr3_4:62109777-62109796 | Msa0512350:CDS | 30.0% |
| ! | GGTGGATTTAACAGTTTATT+TGG | + | chr3_4:62109798-62109817 | Msa0512350:CDS | 30.0% |
| ACGCAATCAAATGATAGAAA+AGG | - | chr3_4:62109918-62109937 | None:intergenic | 30.0% | |
| TTTCTATCATTTGATTGCGT+TGG | + | chr3_4:62109918-62109937 | Msa0512350:intron | 30.0% | |
| ! | CTGTTTTCATAAGCTTATCT+TGG | - | chr3_4:62110056-62110075 | None:intergenic | 30.0% |
| !! | TTCAGTTTTAGTGCTCAATA+TGG | - | chr3_4:62110334-62110353 | None:intergenic | 30.0% |
| CATTAATACCAGAAAAGGAA+AGG | - | chr3_4:62110395-62110414 | None:intergenic | 30.0% | |
| GTCTTCATTAATACCAGAAA+AGG | - | chr3_4:62110400-62110419 | None:intergenic | 30.0% | |
| AGAGGAAAAACACATTCAAT+AGG | - | chr3_4:62110634-62110653 | None:intergenic | 30.0% | |
| ! | GCGTTTTTCATTCAAAAAAG+AGG | - | chr3_4:62110652-62110671 | None:intergenic | 30.0% |
| TGAAAAGAGTTTCTAAACAG+TGG | + | chr3_4:62110716-62110735 | Msa0512350:intron | 30.0% | |
| CACTTTGTCAGAATTGTGAT+TGG | + | chr3_4:62109054-62109073 | Msa0512350:CDS | 35.0% | |
| ! | TGTCAGAATTGTGATTGGTT+AGG | + | chr3_4:62109059-62109078 | Msa0512350:CDS | 35.0% |
| ! | AATTGTGATTGGTTAGGTCA+TGG | + | chr3_4:62109065-62109084 | Msa0512350:CDS | 35.0% |
| CTACATCTTCCAATCATAAG+AGG | + | chr3_4:62109093-62109112 | Msa0512350:CDS | 35.0% | |
| AGACCATATCGAAGAAAGTT+CGG | - | chr3_4:62109156-62109175 | None:intergenic | 35.0% | |
| ATGTAGTTTCACTCAGAGAA+GGG | - | chr3_4:62109193-62109212 | None:intergenic | 35.0% | |
| !! | TTAATGAGAATAGGAGTGCT+TGG | + | chr3_4:62109240-62109259 | Msa0512350:CDS | 35.0% |
| !! | TAATGAGAATAGGAGTGCTT+GGG | + | chr3_4:62109241-62109260 | Msa0512350:CDS | 35.0% |
| ! | TCAGACACGTTCTGATTTTT+CGG | - | chr3_4:62109272-62109291 | None:intergenic | 35.0% |
| ATTCATTGGTAGATCCATCT+GGG | - | chr3_4:62109391-62109410 | None:intergenic | 35.0% | |
| TACCAATGAATGTGTACCAA+AGG | + | chr3_4:62109400-62109419 | Msa0512350:CDS | 35.0% | |
| TACCTTTGGTACACATTCAT+TGG | - | chr3_4:62109405-62109424 | None:intergenic | 35.0% | |
| !! | AACTCTCATTGTTGATTTCC+AGG | + | chr3_4:62109623-62109642 | Msa0512350:intron | 35.0% |
| ! | GATGATGATGATGATCTGTA+TGG | + | chr3_4:62109681-62109700 | Msa0512350:CDS | 35.0% |
| CGATTTCGATATGGATGAAA+TGG | + | chr3_4:62109704-62109723 | Msa0512350:CDS | 35.0% | |
| ! | GAGAACTATGACGAACTTTT+TGG | + | chr3_4:62109738-62109757 | Msa0512350:CDS | 35.0% |
| !! | CTATGACGAACTTTTTGGTA+TGG | + | chr3_4:62109743-62109762 | Msa0512350:CDS | 35.0% |
| !! | GAAGAGCTTTTTGAAAATGG+TGG | + | chr3_4:62109780-62109799 | Msa0512350:CDS | 35.0% |
| AGCATTAGCATCTTGACAAT+TGG | - | chr3_4:62109850-62109869 | None:intergenic | 35.0% | |
| AGCTTATCTTGGAGAACTAA+TGG | - | chr3_4:62110045-62110064 | None:intergenic | 35.0% | |
| TAGTAGACATAAGCTCTGTT+TGG | - | chr3_4:62110156-62110175 | None:intergenic | 35.0% | |
| ACAGAGCTTATGTCTACTAT+TGG | + | chr3_4:62110157-62110176 | Msa0512350:intron | 35.0% | |
| CTCTACTTAAAATCAACCGA+AGG | - | chr3_4:62110214-62110233 | None:intergenic | 35.0% | |
| TATGTTCAGGGTTCATCAAT+TGG | + | chr3_4:62110258-62110277 | Msa0512350:intron | 35.0% | |
| TGAATGAAAAACGCCTAACA+AGG | + | chr3_4:62110658-62110677 | Msa0512350:intron | 35.0% | |
| GAATGAAAAACGCCTAACAA+GGG | + | chr3_4:62110659-62110678 | Msa0512350:intron | 35.0% | |
| GCATTACTCACTTTACAAAC+TGG | + | chr3_4:62110738-62110757 | Msa0512350:intron | 35.0% | |
| TGCTAACAAGCTAGGAATTA+CGG | + | chr3_4:62110800-62110819 | Msa0512350:intron | 35.0% | |
| CACTTTGTCAGAATTGTGAT+TGG | + | chr3_4:62109054-62109073 | Msa0512350:CDS | 35.0% | |
| ! | TGTCAGAATTGTGATTGGTT+AGG | + | chr3_4:62109059-62109078 | Msa0512350:CDS | 35.0% |
| ! | AATTGTGATTGGTTAGGTCA+TGG | + | chr3_4:62109065-62109084 | Msa0512350:CDS | 35.0% |
| CTACATCTTCCAATCATAAG+AGG | + | chr3_4:62109093-62109112 | Msa0512350:CDS | 35.0% | |
| AGACCATATCGAAGAAAGTT+CGG | - | chr3_4:62109156-62109175 | None:intergenic | 35.0% | |
| ATGTAGTTTCACTCAGAGAA+GGG | - | chr3_4:62109193-62109212 | None:intergenic | 35.0% | |
| !! | TTAATGAGAATAGGAGTGCT+TGG | + | chr3_4:62109240-62109259 | Msa0512350:CDS | 35.0% |
| !! | TAATGAGAATAGGAGTGCTT+GGG | + | chr3_4:62109241-62109260 | Msa0512350:CDS | 35.0% |
| ! | TCAGACACGTTCTGATTTTT+CGG | - | chr3_4:62109272-62109291 | None:intergenic | 35.0% |
| ATTCATTGGTAGATCCATCT+GGG | - | chr3_4:62109391-62109410 | None:intergenic | 35.0% | |
| TACCAATGAATGTGTACCAA+AGG | + | chr3_4:62109400-62109419 | Msa0512350:CDS | 35.0% | |
| TACCTTTGGTACACATTCAT+TGG | - | chr3_4:62109405-62109424 | None:intergenic | 35.0% | |
| !! | AACTCTCATTGTTGATTTCC+AGG | + | chr3_4:62109623-62109642 | Msa0512350:intron | 35.0% |
| ! | GATGATGATGATGATCTGTA+TGG | + | chr3_4:62109681-62109700 | Msa0512350:CDS | 35.0% |
| CGATTTCGATATGGATGAAA+TGG | + | chr3_4:62109704-62109723 | Msa0512350:CDS | 35.0% | |
| ! | GAGAACTATGACGAACTTTT+TGG | + | chr3_4:62109738-62109757 | Msa0512350:CDS | 35.0% |
| !! | CTATGACGAACTTTTTGGTA+TGG | + | chr3_4:62109743-62109762 | Msa0512350:CDS | 35.0% |
| !! | GAAGAGCTTTTTGAAAATGG+TGG | + | chr3_4:62109780-62109799 | Msa0512350:CDS | 35.0% |
| AGCATTAGCATCTTGACAAT+TGG | - | chr3_4:62109850-62109869 | None:intergenic | 35.0% | |
| AGCTTATCTTGGAGAACTAA+TGG | - | chr3_4:62110045-62110064 | None:intergenic | 35.0% | |
| TAGTAGACATAAGCTCTGTT+TGG | - | chr3_4:62110156-62110175 | None:intergenic | 35.0% | |
| ACAGAGCTTATGTCTACTAT+TGG | + | chr3_4:62110157-62110176 | Msa0512350:intron | 35.0% | |
| CTCTACTTAAAATCAACCGA+AGG | - | chr3_4:62110214-62110233 | None:intergenic | 35.0% | |
| TATGTTCAGGGTTCATCAAT+TGG | + | chr3_4:62110258-62110277 | Msa0512350:intron | 35.0% | |
| TGAATGAAAAACGCCTAACA+AGG | + | chr3_4:62110658-62110677 | Msa0512350:intron | 35.0% | |
| GAATGAAAAACGCCTAACAA+GGG | + | chr3_4:62110659-62110678 | Msa0512350:intron | 35.0% | |
| GCATTACTCACTTTACAAAC+TGG | + | chr3_4:62110738-62110757 | Msa0512350:intron | 35.0% | |
| TGCTAACAAGCTAGGAATTA+CGG | + | chr3_4:62110800-62110819 | Msa0512350:intron | 35.0% | |
| ! | GTGATTTTTGTGGAGGTCAA+CGG | + | chr3_4:62108871-62108890 | Msa0512350:CDS | 40.0% |
| GATCGTTTGCCTCTTATGAT+TGG | - | chr3_4:62109105-62109124 | None:intergenic | 40.0% | |
| CAAACGATCAATTGCTACTC+AGG | + | chr3_4:62109116-62109135 | Msa0512350:CDS | 40.0% | |
| CATGTAGTTTCACTCAGAGA+AGG | - | chr3_4:62109194-62109213 | None:intergenic | 40.0% | |
| ACTACATGTGAGCAAGAACT+AGG | + | chr3_4:62109206-62109225 | Msa0512350:CDS | 40.0% | |
| AGCTACTGATCTACCTGATT+TGG | + | chr3_4:62109301-62109320 | Msa0512350:CDS | 40.0% | |
| GCGAAAGACTTATCCAAATC+AGG | - | chr3_4:62109317-62109336 | None:intergenic | 40.0% | |
| GATTTGGATAAGTCTTTCGC+CGG | + | chr3_4:62109317-62109336 | Msa0512350:CDS | 40.0% | |
| CATTCATTGGTAGATCCATC+TGG | - | chr3_4:62109392-62109411 | None:intergenic | 40.0% | |
| TAAACGAGTTTCACTACCTG+AGG | + | chr3_4:62109558-62109577 | Msa0512350:intron | 40.0% | |
| CATCATCATCACTTGCTTCA+GGG | - | chr3_4:62109671-62109690 | None:intergenic | 40.0% | |
| TCATCATCATCACTTGCTTC+AGG | - | chr3_4:62109672-62109691 | None:intergenic | 40.0% | |
| TCTGTATGGCGATTTCGATA+TGG | + | chr3_4:62109695-62109714 | Msa0512350:CDS | 40.0% | |
| AAGCTCTTCAGAATGAGTGA+GGG | - | chr3_4:62109769-62109788 | None:intergenic | 40.0% | |
| AAAGCTCTTCAGAATGAGTG+AGG | - | chr3_4:62109770-62109789 | None:intergenic | 40.0% | |
| AGAAAAGGAAAGGCTCGATT+GGG | - | chr3_4:62110385-62110404 | None:intergenic | 40.0% | |
| TCTGGTATTAATGAAGACGG+TGG | + | chr3_4:62110402-62110421 | Msa0512350:CDS | 40.0% | |
| AGCTTCTTCAATGCTTCTCA+TGG | + | chr3_4:62110449-62110468 | Msa0512350:CDS | 40.0% | |
| GCTTCTTCAATGCTTCTCAT+GGG | + | chr3_4:62110450-62110469 | Msa0512350:CDS | 40.0% | |
| TCAGGACAAGTGTTTAACCA+AGG | - | chr3_4:62110483-62110502 | None:intergenic | 40.0% | |
| TGTAGTTGTAGCTCATTCTC+AGG | - | chr3_4:62110501-62110520 | None:intergenic | 40.0% | |
| ! | TAGTGCTGTTATGCGATACA+AGG | + | chr3_4:62110536-62110555 | Msa0512350:CDS | 40.0% |
| !! | TCCTAGCTTGTTAGCAAAGA+CGG | - | chr3_4:62110796-62110815 | None:intergenic | 40.0% |
| GCTAACAAGCTAGGAATTAC+GGG | + | chr3_4:62110801-62110820 | Msa0512350:intron | 40.0% | |
| GCTCAAAGGGTCATAATCAT+AGG | - | chr3_4:62110988-62111007 | None:intergenic | 40.0% | |
| ! | GTGATTTTTGTGGAGGTCAA+CGG | + | chr3_4:62108871-62108890 | Msa0512350:CDS | 40.0% |
| GATCGTTTGCCTCTTATGAT+TGG | - | chr3_4:62109105-62109124 | None:intergenic | 40.0% | |
| CAAACGATCAATTGCTACTC+AGG | + | chr3_4:62109116-62109135 | Msa0512350:CDS | 40.0% | |
| CATGTAGTTTCACTCAGAGA+AGG | - | chr3_4:62109194-62109213 | None:intergenic | 40.0% | |
| ACTACATGTGAGCAAGAACT+AGG | + | chr3_4:62109206-62109225 | Msa0512350:CDS | 40.0% | |
| AGCTACTGATCTACCTGATT+TGG | + | chr3_4:62109301-62109320 | Msa0512350:CDS | 40.0% | |
| GCGAAAGACTTATCCAAATC+AGG | - | chr3_4:62109317-62109336 | None:intergenic | 40.0% | |
| GATTTGGATAAGTCTTTCGC+CGG | + | chr3_4:62109317-62109336 | Msa0512350:CDS | 40.0% | |
| CATTCATTGGTAGATCCATC+TGG | - | chr3_4:62109392-62109411 | None:intergenic | 40.0% | |
| TAAACGAGTTTCACTACCTG+AGG | + | chr3_4:62109558-62109577 | Msa0512350:intron | 40.0% | |
| CATCATCATCACTTGCTTCA+GGG | - | chr3_4:62109671-62109690 | None:intergenic | 40.0% | |
| TCATCATCATCACTTGCTTC+AGG | - | chr3_4:62109672-62109691 | None:intergenic | 40.0% | |
| TCTGTATGGCGATTTCGATA+TGG | + | chr3_4:62109695-62109714 | Msa0512350:CDS | 40.0% | |
| AAGCTCTTCAGAATGAGTGA+GGG | - | chr3_4:62109769-62109788 | None:intergenic | 40.0% | |
| AAAGCTCTTCAGAATGAGTG+AGG | - | chr3_4:62109770-62109789 | None:intergenic | 40.0% | |
| AGAAAAGGAAAGGCTCGATT+GGG | - | chr3_4:62110385-62110404 | None:intergenic | 40.0% | |
| TCTGGTATTAATGAAGACGG+TGG | + | chr3_4:62110402-62110421 | Msa0512350:CDS | 40.0% | |
| AGCTTCTTCAATGCTTCTCA+TGG | + | chr3_4:62110449-62110468 | Msa0512350:CDS | 40.0% | |
| GCTTCTTCAATGCTTCTCAT+GGG | + | chr3_4:62110450-62110469 | Msa0512350:CDS | 40.0% | |
| TCAGGACAAGTGTTTAACCA+AGG | - | chr3_4:62110483-62110502 | None:intergenic | 40.0% | |
| TGTAGTTGTAGCTCATTCTC+AGG | - | chr3_4:62110501-62110520 | None:intergenic | 40.0% | |
| ! | TAGTGCTGTTATGCGATACA+AGG | + | chr3_4:62110536-62110555 | Msa0512350:CDS | 40.0% |
| !! | TCCTAGCTTGTTAGCAAAGA+CGG | - | chr3_4:62110796-62110815 | None:intergenic | 40.0% |
| GCTAACAAGCTAGGAATTAC+GGG | + | chr3_4:62110801-62110820 | Msa0512350:intron | 40.0% | |
| GCTCAAAGGGTCATAATCAT+AGG | - | chr3_4:62110988-62111007 | None:intergenic | 40.0% | |
| CCTTGAATGTCTTCGAGCAA+GGG | - | chr3_4:62108970-62108989 | None:intergenic | 45.0% | |
| TCCTTGAATGTCTTCGAGCA+AGG | - | chr3_4:62108971-62108990 | None:intergenic | 45.0% | |
| ATGCAGTTCACAACCTGCTT+TGG | + | chr3_4:62109007-62109026 | Msa0512350:CDS | 45.0% | |
| GTTCACAACCTGCTTTGGTT+AGG | + | chr3_4:62109012-62109031 | Msa0512350:CDS | 45.0% | |
| TCAGAACACCTAACCAAAGC+AGG | - | chr3_4:62109023-62109042 | None:intergenic | 45.0% | |
| !! | TTTGCTTGATTCGGGCTTTG+AGG | - | chr3_4:62109348-62109367 | None:intergenic | 45.0% |
| ACGCGGTTCTTTGCTTGATT+CGG | - | chr3_4:62109357-62109376 | None:intergenic | 45.0% | |
| AGCTTAATCATTGGCGAAGC+AGG | + | chr3_4:62109502-62109521 | Msa0512350:intron | 45.0% | |
| TTGTAGCAGGACAGTATACC+TGG | - | chr3_4:62109644-62109663 | None:intergenic | 45.0% | |
| ATTGGAATCTCCAGCAGACA+TGG | - | chr3_4:62109832-62109851 | None:intergenic | 45.0% | |
| TCAAGATGCTAATGCTGCTG+AGG | + | chr3_4:62109854-62109873 | Msa0512350:CDS | 45.0% | |
| !! | TAAGCACTGGTGAGACTGTT+TGG | + | chr3_4:62109965-62109984 | Msa0512350:intron | 45.0% |
| !! | AAGCACTGGTGAGACTGTTT+GGG | + | chr3_4:62109966-62109985 | Msa0512350:intron | 45.0% |
| AGACTGTTTGGGAGAGCTTA+TGG | + | chr3_4:62109977-62109996 | Msa0512350:intron | 45.0% | |
| CAGAAAAGGAAAGGCTCGAT+TGG | - | chr3_4:62110386-62110405 | None:intergenic | 45.0% | |
| ! | CAATCGAGCCTTTCCTTTTC+TGG | + | chr3_4:62110384-62110403 | Msa0512350:CDS | 45.0% |
| ATTAATGAAGACGGTGGTGC+TGG | + | chr3_4:62110408-62110427 | Msa0512350:CDS | 45.0% | |
| GCTGGAGACTATCAAGATTG+TGG | + | chr3_4:62110426-62110445 | Msa0512350:CDS | 45.0% | |
| GGACAAGTGTTTAACCAAGG+AGG | - | chr3_4:62110480-62110499 | None:intergenic | 45.0% | |
| ATCGCATAACAGCACTACAG+CGG | - | chr3_4:62110533-62110552 | None:intergenic | 45.0% | |
| TGAAAAACGCCTAACAAGGG+TGG | + | chr3_4:62110662-62110681 | Msa0512350:intron | 45.0% | |
| GAAAAACGCCTAACAAGGGT+GGG | + | chr3_4:62110663-62110682 | Msa0512350:intron | 45.0% | |
| AAAAACGCCTAACAAGGGTG+GGG | + | chr3_4:62110664-62110683 | Msa0512350:intron | 45.0% | |
| ACCGTCTTTGCTAACAAGCT+AGG | + | chr3_4:62110792-62110811 | Msa0512350:intron | 45.0% | |
| ATATGCCTCTCGCAAGGAAA+GGG | + | chr3_4:62110914-62110933 | Msa0512350:CDS | 45.0% | |
| ! | AGCTTCTCGTTTGGCTCAAA+GGG | - | chr3_4:62111001-62111020 | None:intergenic | 45.0% |
| ! | TAGCTTCTCGTTTGGCTCAA+AGG | - | chr3_4:62111002-62111021 | None:intergenic | 45.0% |
| CCTTGAATGTCTTCGAGCAA+GGG | - | chr3_4:62108970-62108989 | None:intergenic | 45.0% | |
| TCCTTGAATGTCTTCGAGCA+AGG | - | chr3_4:62108971-62108990 | None:intergenic | 45.0% | |
| ATGCAGTTCACAACCTGCTT+TGG | + | chr3_4:62109007-62109026 | Msa0512350:CDS | 45.0% | |
| GTTCACAACCTGCTTTGGTT+AGG | + | chr3_4:62109012-62109031 | Msa0512350:CDS | 45.0% | |
| TCAGAACACCTAACCAAAGC+AGG | - | chr3_4:62109023-62109042 | None:intergenic | 45.0% | |
| !! | TTTGCTTGATTCGGGCTTTG+AGG | - | chr3_4:62109348-62109367 | None:intergenic | 45.0% |
| ACGCGGTTCTTTGCTTGATT+CGG | - | chr3_4:62109357-62109376 | None:intergenic | 45.0% | |
| AGCTTAATCATTGGCGAAGC+AGG | + | chr3_4:62109502-62109521 | Msa0512350:intron | 45.0% | |
| TTGTAGCAGGACAGTATACC+TGG | - | chr3_4:62109644-62109663 | None:intergenic | 45.0% | |
| ATTGGAATCTCCAGCAGACA+TGG | - | chr3_4:62109832-62109851 | None:intergenic | 45.0% | |
| TCAAGATGCTAATGCTGCTG+AGG | + | chr3_4:62109854-62109873 | Msa0512350:CDS | 45.0% | |
| !! | TAAGCACTGGTGAGACTGTT+TGG | + | chr3_4:62109965-62109984 | Msa0512350:intron | 45.0% |
| !! | AAGCACTGGTGAGACTGTTT+GGG | + | chr3_4:62109966-62109985 | Msa0512350:intron | 45.0% |
| AGACTGTTTGGGAGAGCTTA+TGG | + | chr3_4:62109977-62109996 | Msa0512350:intron | 45.0% | |
| CAGAAAAGGAAAGGCTCGAT+TGG | - | chr3_4:62110386-62110405 | None:intergenic | 45.0% | |
| ! | CAATCGAGCCTTTCCTTTTC+TGG | + | chr3_4:62110384-62110403 | Msa0512350:CDS | 45.0% |
| ATTAATGAAGACGGTGGTGC+TGG | + | chr3_4:62110408-62110427 | Msa0512350:CDS | 45.0% | |
| GCTGGAGACTATCAAGATTG+TGG | + | chr3_4:62110426-62110445 | Msa0512350:CDS | 45.0% | |
| GGACAAGTGTTTAACCAAGG+AGG | - | chr3_4:62110480-62110499 | None:intergenic | 45.0% | |
| ATCGCATAACAGCACTACAG+CGG | - | chr3_4:62110533-62110552 | None:intergenic | 45.0% | |
| TGAAAAACGCCTAACAAGGG+TGG | + | chr3_4:62110662-62110681 | Msa0512350:intron | 45.0% | |
| GAAAAACGCCTAACAAGGGT+GGG | + | chr3_4:62110663-62110682 | Msa0512350:intron | 45.0% | |
| AAAAACGCCTAACAAGGGTG+GGG | + | chr3_4:62110664-62110683 | Msa0512350:intron | 45.0% | |
| ACCGTCTTTGCTAACAAGCT+AGG | + | chr3_4:62110792-62110811 | Msa0512350:intron | 45.0% | |
| ATATGCCTCTCGCAAGGAAA+GGG | + | chr3_4:62110914-62110933 | Msa0512350:CDS | 45.0% | |
| ! | AGCTTCTCGTTTGGCTCAAA+GGG | - | chr3_4:62111001-62111020 | None:intergenic | 45.0% |
| ! | TAGCTTCTCGTTTGGCTCAA+AGG | - | chr3_4:62111002-62111021 | None:intergenic | 45.0% |
| ATCTGAGCGACAGTACACCA+TGG | - | chr3_4:62108898-62108917 | None:intergenic | 50.0% | |
| CCCTTGCTCGAAGACATTCA+AGG | + | chr3_4:62108967-62108986 | Msa0512350:CDS | 50.0% | |
| AAGAAAGTTCGGCCGACGAA+GGG | - | chr3_4:62109145-62109164 | None:intergenic | 50.0% | |
| CGGCCGAACTTTCTTCGATA+TGG | + | chr3_4:62109150-62109169 | Msa0512350:CDS | 50.0% | |
| !! | TTCGGGCTTTGAGGATGTAC+CGG | - | chr3_4:62109339-62109358 | None:intergenic | 50.0% |
| CGCGGTTCTTTGCTTGATTC+GGG | - | chr3_4:62109356-62109375 | None:intergenic | 50.0% | |
| CATTGGTAGATCCATCTGGG+CGG | - | chr3_4:62109388-62109407 | None:intergenic | 50.0% | |
| GCTTCAGGGCAATTTGTAGC+AGG | - | chr3_4:62109657-62109676 | None:intergenic | 50.0% | |
| TTCTCATGGGAGAACCTCCT+TGG | + | chr3_4:62110463-62110482 | Msa0512350:CDS | 50.0% | |
| AGTGAGATATGCCTCTCGCA+AGG | + | chr3_4:62110908-62110927 | Msa0512350:CDS | 50.0% | |
| GATATGCCTCTCGCAAGGAA+AGG | + | chr3_4:62110913-62110932 | Msa0512350:CDS | 50.0% | |
| !! | AAGGGCCGGTTTGTTAAAGC+CGG | + | chr3_4:62110957-62110976 | Msa0512350:CDS | 50.0% |
| GTCATAATCATAGGCCTCGC+CGG | - | chr3_4:62110979-62110998 | None:intergenic | 50.0% | |
| ATCTGAGCGACAGTACACCA+TGG | - | chr3_4:62108898-62108917 | None:intergenic | 50.0% | |
| CCCTTGCTCGAAGACATTCA+AGG | + | chr3_4:62108967-62108986 | Msa0512350:CDS | 50.0% | |
| AAGAAAGTTCGGCCGACGAA+GGG | - | chr3_4:62109145-62109164 | None:intergenic | 50.0% | |
| CGGCCGAACTTTCTTCGATA+TGG | + | chr3_4:62109150-62109169 | Msa0512350:CDS | 50.0% | |
| !! | TTCGGGCTTTGAGGATGTAC+CGG | - | chr3_4:62109339-62109358 | None:intergenic | 50.0% |
| CGCGGTTCTTTGCTTGATTC+GGG | - | chr3_4:62109356-62109375 | None:intergenic | 50.0% | |
| CATTGGTAGATCCATCTGGG+CGG | - | chr3_4:62109388-62109407 | None:intergenic | 50.0% | |
| GCTTCAGGGCAATTTGTAGC+AGG | - | chr3_4:62109657-62109676 | None:intergenic | 50.0% | |
| TTCTCATGGGAGAACCTCCT+TGG | + | chr3_4:62110463-62110482 | Msa0512350:CDS | 50.0% | |
| AGTGAGATATGCCTCTCGCA+AGG | + | chr3_4:62110908-62110927 | Msa0512350:CDS | 50.0% | |
| GATATGCCTCTCGCAAGGAA+AGG | + | chr3_4:62110913-62110932 | Msa0512350:CDS | 50.0% | |
| !! | AAGGGCCGGTTTGTTAAAGC+CGG | + | chr3_4:62110957-62110976 | Msa0512350:CDS | 50.0% |
| GTCATAATCATAGGCCTCGC+CGG | - | chr3_4:62110979-62110998 | None:intergenic | 50.0% | |
| TTGTGGAGGTCAACGGTCCA+TGG | + | chr3_4:62108878-62108897 | Msa0512350:CDS | 55.0% | |
| GGTGTACTGTCGCTCAGATG+CGG | + | chr3_4:62108899-62108918 | Msa0512350:CDS | 55.0% | |
| ! | CTACTCAGGTTGCCCTTCGT+CGG | + | chr3_4:62109130-62109149 | Msa0512350:CDS | 55.0% |
| GAAGAAAGTTCGGCCGACGA+AGG | - | chr3_4:62109146-62109165 | None:intergenic | 55.0% | |
| AGTTCGTCCCCACCCTTGTT+AGG | - | chr3_4:62110674-62110693 | None:intergenic | 55.0% | |
| ATCAGCCCTTTCCTTGCGAG+AGG | - | chr3_4:62110922-62110941 | None:intergenic | 55.0% | |
| AGGAAAGGGCTGATGTCCGA+AGG | + | chr3_4:62110928-62110947 | Msa0512350:CDS | 55.0% | |
| !! | CCTCGCCGGCTTTAACAAAC+CGG | - | chr3_4:62110965-62110984 | None:intergenic | 55.0% |
| TTGTGGAGGTCAACGGTCCA+TGG | + | chr3_4:62108878-62108897 | Msa0512350:CDS | 55.0% | |
| GGTGTACTGTCGCTCAGATG+CGG | + | chr3_4:62108899-62108918 | Msa0512350:CDS | 55.0% | |
| ! | CTACTCAGGTTGCCCTTCGT+CGG | + | chr3_4:62109130-62109149 | Msa0512350:CDS | 55.0% |
| GAAGAAAGTTCGGCCGACGA+AGG | - | chr3_4:62109146-62109165 | None:intergenic | 55.0% | |
| AGTTCGTCCCCACCCTTGTT+AGG | - | chr3_4:62110674-62110693 | None:intergenic | 55.0% | |
| ATCAGCCCTTTCCTTGCGAG+AGG | - | chr3_4:62110922-62110941 | None:intergenic | 55.0% | |
| AGGAAAGGGCTGATGTCCGA+AGG | + | chr3_4:62110928-62110947 | Msa0512350:CDS | 55.0% | |
| !! | CCTCGCCGGCTTTAACAAAC+CGG | - | chr3_4:62110965-62110984 | None:intergenic | 55.0% |
| GGGGCAAAAGCCATGTCTGC+TGG | + | chr3_4:62109819-62109838 | Msa0512350:CDS | 60.0% | |
| GATGCTGCAGTGCTGCATGC+TGG | - | chr3_4:62110303-62110322 | None:intergenic | 60.0% | |
| ! | TGATGTCCGAAGGCGCGTGA+AGG | + | chr3_4:62110938-62110957 | Msa0512350:CDS | 60.0% |
| ! | GATGTCCGAAGGCGCGTGAA+GGG | + | chr3_4:62110939-62110958 | Msa0512350:CDS | 60.0% |
| !! | CCGGTTTGTTAAAGCCGGCG+AGG | + | chr3_4:62110962-62110981 | Msa0512350:CDS | 60.0% |
| GGGGCAAAAGCCATGTCTGC+TGG | + | chr3_4:62109819-62109838 | Msa0512350:CDS | 60.0% | |
| GATGCTGCAGTGCTGCATGC+TGG | - | chr3_4:62110303-62110322 | None:intergenic | 60.0% | |
| ! | TGATGTCCGAAGGCGCGTGA+AGG | + | chr3_4:62110938-62110957 | Msa0512350:CDS | 60.0% |
| ! | GATGTCCGAAGGCGCGTGAA+GGG | + | chr3_4:62110939-62110958 | Msa0512350:CDS | 60.0% |
| !! | CCGGTTTGTTAAAGCCGGCG+AGG | + | chr3_4:62110962-62110981 | Msa0512350:CDS | 60.0% |
| TCTGGGCGGTCGAGCATACG+CGG | - | chr3_4:62109374-62109393 | None:intergenic | 65.0% | |
| CGTATGCTCGACCGCCCAGA+TGG | + | chr3_4:62109374-62109393 | Msa0512350:CDS | 65.0% | |
| TCTGGGCGGTCGAGCATACG+CGG | - | chr3_4:62109374-62109393 | None:intergenic | 65.0% | |
| CGTATGCTCGACCGCCCAGA+TGG | + | chr3_4:62109374-62109393 | Msa0512350:CDS | 65.0% | |
| ! | TCCGAAGGCGCGTGAAGGGC+CGG | + | chr3_4:62110943-62110962 | Msa0512350:CDS | 70.0% |
| ACCGGCCCTTCACGCGCCTT+CGG | - | chr3_4:62110947-62110966 | None:intergenic | 70.0% | |
| ! | TCCGAAGGCGCGTGAAGGGC+CGG | + | chr3_4:62110943-62110962 | Msa0512350:CDS | 70.0% |
| ACCGGCCCTTCACGCGCCTT+CGG | - | chr3_4:62110947-62110966 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 62108858 | 62111025 | 62108858 | ID=Msa0512350;Name=Msa0512350 |
| chr3_4 | mRNA | 62108858 | 62111025 | 62108858 | ID=Msa0512350-mRNA-1;Parent=Msa0512350;Name=Msa0512350-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.33|0|1|1|1|4|0|411 |
| chr3_4 | exon | 62108858 | 62109421 | 62108858 | ID=Msa0512350-mRNA-1:exon:15320;Parent=Msa0512350-mRNA-1 |
| chr3_4 | exon | 62109645 | 62109875 | 62109645 | ID=Msa0512350-mRNA-1:exon:15321;Parent=Msa0512350-mRNA-1 |
| chr3_4 | exon | 62110267 | 62110577 | 62110267 | ID=Msa0512350-mRNA-1:exon:15322;Parent=Msa0512350-mRNA-1 |
| chr3_4 | exon | 62110896 | 62111025 | 62110896 | ID=Msa0512350-mRNA-1:exon:15323;Parent=Msa0512350-mRNA-1 |
| chr3_4 | CDS | 62108858 | 62109421 | 62108858 | ID=Msa0512350-mRNA-1:cds;Parent=Msa0512350-mRNA-1 |
| chr3_4 | CDS | 62109645 | 62109875 | 62109645 | ID=Msa0512350-mRNA-1:cds;Parent=Msa0512350-mRNA-1 |
| chr3_4 | CDS | 62110267 | 62110577 | 62110267 | ID=Msa0512350-mRNA-1:cds;Parent=Msa0512350-mRNA-1 |
| chr3_4 | CDS | 62110896 | 62111025 | 62110896 | ID=Msa0512350-mRNA-1:cds;Parent=Msa0512350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
