Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227360 | XP_003597464.1 | 96.888 | 482 | 13 | 1 | 1 | 480 | 1 | 482 | 0.0 | 957 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227360 | G7IUF0 | 96.888 | 482 | 13 | 1 | 1 | 480 | 1 | 482 | 0.0 | 957 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001830 | Msa0227360 | 0.823326 | 1.471223e-53 | -8.615850e-47 |
| Msa0007470 | Msa0227360 | 0.802773 | 4.784768e-49 | -8.615850e-47 |
| Msa0011050 | Msa0227360 | 0.813105 | 3.029484e-51 | -8.615850e-47 |
| Msa0015090 | Msa0227360 | 0.828408 | 9.142179e-55 | -8.615850e-47 |
| Msa0026630 | Msa0227360 | 0.864789 | 9.440503e-65 | -8.615850e-47 |
| Msa0033850 | Msa0227360 | 0.804044 | 2.609748e-49 | -8.615850e-47 |
| Msa0034480 | Msa0227360 | 0.810830 | 9.485821e-51 | -8.615850e-47 |
| Msa0048390 | Msa0227360 | 0.818498 | 1.899779e-52 | -8.615850e-47 |
| Msa0049750 | Msa0227360 | 0.827830 | 1.259793e-54 | -8.615850e-47 |
| Msa0051960 | Msa0227360 | 0.807403 | 5.141492e-50 | -8.615850e-47 |
| Msa0060070 | Msa0227360 | 0.820931 | 5.285605e-53 | -8.615850e-47 |
| Msa0071250 | Msa0227360 | 0.805474 | 1.311654e-49 | -8.615850e-47 |
| Msa0081620 | Msa0227360 | 0.802459 | 5.553900e-49 | -8.615850e-47 |
| Msa0092410 | Msa0227360 | 0.816571 | 5.162315e-52 | -8.615850e-47 |
| Msa0094710 | Msa0227360 | 0.808539 | 2.947661e-50 | -8.615850e-47 |
| Msa0101960 | Msa0227360 | 0.813730 | 2.207869e-51 | -8.615850e-47 |
| Msa0117520 | Msa0227360 | 0.817799 | 2.733415e-52 | -8.615850e-47 |
| Msa0136630 | Msa0227360 | 0.811833 | 5.743462e-51 | -8.615850e-47 |
| Msa0138020 | Msa0227360 | 0.809356 | 1.970397e-50 | -8.615850e-47 |
| Msa0144530 | Msa0227360 | 0.812889 | 3.377742e-51 | -8.615850e-47 |
| Msa0151220 | Msa0227360 | 0.800829 | 1.199541e-48 | -8.615850e-47 |
| Msa0152560 | Msa0227360 | 0.822857 | 1.892595e-53 | -8.615850e-47 |
| Msa0160960 | Msa0227360 | 0.816116 | 6.526876e-52 | -8.615850e-47 |
| Msa0173960 | Msa0227360 | 0.804637 | 1.963457e-49 | -8.615850e-47 |
| Msa0176030 | Msa0227360 | 0.800615 | 1.326098e-48 | -8.615850e-47 |
| Msa0176260 | Msa0227360 | 0.825066 | 5.740323e-54 | -8.615850e-47 |
| Msa0189610 | Msa0227360 | 0.802770 | 4.791077e-49 | -8.615850e-47 |
| Msa0222980 | Msa0227360 | 0.812668 | 3.776398e-51 | -8.615850e-47 |
| Msa0227360 | Msa0240270 | 0.815229 | 1.028801e-51 | -8.615850e-47 |
| Msa0227360 | Msa0241140 | 0.802367 | 5.801495e-49 | -8.615850e-47 |
| Msa0227360 | Msa0264310 | 0.807499 | 4.907157e-50 | -8.615850e-47 |
| Msa0227360 | Msa0265940 | 0.812797 | 3.537711e-51 | -8.615850e-47 |
| Msa0227360 | Msa0269560 | 0.809874 | 1.525246e-50 | -8.615850e-47 |
| Msa0227360 | Msa0276430 | 0.835087 | 2.058182e-56 | -8.615850e-47 |
| Msa0227360 | Msa0302730 | 0.805414 | 1.350231e-49 | -8.615850e-47 |
| Msa0227360 | Msa0302840 | 0.984271 | 4.465625e-160 | -8.615850e-47 |
| Msa0227360 | Msa0309270 | 0.800694 | 1.278196e-48 | -8.615850e-47 |
| Msa0227360 | Msa0316470 | 0.812890 | 3.376101e-51 | -8.615850e-47 |
| Msa0227360 | Msa0364790 | 0.851757 | 7.210218e-61 | -8.615850e-47 |
| Msa0227360 | Msa0365950 | 0.843045 | 1.783069e-58 | -8.615850e-47 |
| Msa0227360 | Msa0386940 | 0.804405 | 2.194564e-49 | -8.615850e-47 |
| Msa0227360 | Msa0388730 | 0.830099 | 3.553084e-55 | -8.615850e-47 |
| Msa0227360 | Msa0397270 | 0.800500 | 1.399863e-48 | -8.615850e-47 |
| Msa0227360 | Msa0403470 | -0.803981 | 2.689629e-49 | -8.615850e-47 |
| Msa0227360 | Msa0412260 | 0.822040 | 2.930726e-53 | -8.615850e-47 |
| Msa0227360 | Msa0413870 | 0.808846 | 2.533711e-50 | -8.615850e-47 |
| Msa0227360 | Msa0414140 | 0.809643 | 1.710174e-50 | -8.615850e-47 |
| Msa0227360 | Msa0427580 | 0.826288 | 2.945138e-54 | -8.615850e-47 |
| Msa0227360 | Msa0428200 | 0.801474 | 8.852551e-49 | -8.615850e-47 |
| Msa0227360 | Msa0448610 | 0.823897 | 1.081607e-53 | -8.615850e-47 |
| Msa0227360 | Msa0456770 | 0.839817 | 1.262505e-57 | -8.615850e-47 |
| Msa0227360 | Msa0457990 | 0.814413 | 1.560460e-51 | -8.615850e-47 |
| Msa0227360 | Msa0496970 | 0.822880 | 1.869339e-53 | -8.615850e-47 |
| Msa0227360 | Msa0518170 | 0.833938 | 3.999745e-56 | -8.615850e-47 |
| Msa0227360 | Msa0519160 | 0.813758 | 2.176183e-51 | -8.615850e-47 |
| Msa0227360 | Msa0523870 | 0.801513 | 8.689395e-49 | -8.615850e-47 |
| Msa0227360 | Msa0534870 | 0.839075 | 1.967633e-57 | -8.615850e-47 |
| Msa0227360 | Msa0545050 | 0.844726 | 6.324825e-59 | -8.615850e-47 |
| Msa0227360 | Msa0566350 | 0.801581 | 8.414863e-49 | -8.615850e-47 |
| Msa0227360 | Msa0573890 | 0.817713 | 2.858344e-52 | -8.615850e-47 |
| Msa0227360 | Msa0574930 | 0.800089 | 1.697337e-48 | -8.615850e-47 |
| Msa0227360 | Msa0584600 | 0.803363 | 3.613734e-49 | -8.615850e-47 |
| Msa0227360 | Msa0600590 | 0.849412 | 3.287668e-60 | -8.615850e-47 |
| Msa0227360 | Msa0613340 | 0.805367 | 1.381214e-49 | -8.615850e-47 |
| Msa0227360 | Msa0631320 | 0.839347 | 1.673291e-57 | -8.615850e-47 |
| Msa0227360 | Msa0635270 | 0.805496 | 1.297816e-49 | -8.615850e-47 |
| Msa0227360 | Msa0641130 | 0.840379 | 9.012237e-58 | -8.615850e-47 |
| Msa0227360 | Msa0679670 | 0.824706 | 6.980015e-54 | -8.615850e-47 |
| Msa0227360 | Msa0705990 | 0.804303 | 2.304454e-49 | -8.615850e-47 |
| Msa0227360 | Msa0734940 | 0.848427 | 6.172704e-60 | -8.615850e-47 |
| Msa0227360 | Msa0745250 | -0.812498 | 4.112711e-51 | -8.615850e-47 |
| Msa0227360 | Msa0750850 | 0.801822 | 7.510840e-49 | -8.615850e-47 |
| Msa0227360 | Msa0763920 | 0.814811 | 1.274036e-51 | -8.615850e-47 |
| Msa0227360 | Msa0764920 | 0.800241 | 1.580417e-48 | -8.615850e-47 |
| Msa0227360 | Msa0771950 | 0.813268 | 2.788877e-51 | -8.615850e-47 |
| Msa0227360 | Msa0772280 | 0.809798 | 1.583606e-50 | -8.615850e-47 |
| Msa0227360 | Msa0775560 | 0.827147 | 1.837085e-54 | -8.615850e-47 |
| Msa0227360 | Msa0812950 | 0.848258 | 6.875516e-60 | -8.615850e-47 |
| Msa0227360 | Msa0823540 | 0.805706 | 1.172959e-49 | -8.615850e-47 |
| Msa0227360 | Msa0828200 | 0.975313 | 1.003017e-139 | -8.615850e-47 |
| Msa0227360 | Msa0844110 | 0.801217 | 9.990843e-49 | -8.615850e-47 |
| Msa0227360 | Msa0853440 | 0.812216 | 4.739074e-51 | -8.615850e-47 |
| Msa0227360 | Msa0863720 | 0.822359 | 2.470402e-53 | -8.615850e-47 |
| Msa0227360 | Msa0894710 | 0.822987 | 1.765473e-53 | -8.615850e-47 |
| Msa0227360 | Msa0921420 | 0.817885 | 2.614146e-52 | -8.615850e-47 |
| Msa0227360 | Msa0960390 | 0.801283 | 9.684436e-49 | -8.615850e-47 |
| Msa0227360 | Msa0968470 | -0.804068 | 2.580012e-49 | -8.615850e-47 |
| Msa0227360 | Msa0992600 | 0.807579 | 4.718308e-50 | -8.615850e-47 |
| Msa0227360 | Msa0994910 | 0.809666 | 1.690741e-50 | -8.615850e-47 |
| Msa0227360 | Msa1011250 | 0.809910 | 1.497890e-50 | -8.615850e-47 |
| Msa0227360 | Msa1013070 | 0.808081 | 3.689617e-50 | -8.615850e-47 |
| Msa0227360 | Msa1023310 | 0.836588 | 8.568752e-57 | -8.615850e-47 |
| Msa0227360 | Msa1062040 | 0.847877 | 8.753656e-60 | -8.615850e-47 |
| Msa0227360 | Msa1063400 | 0.807669 | 4.515899e-50 | -8.615850e-47 |
| Msa0227360 | Msa1070540 | 0.818921 | 1.523013e-52 | -8.615850e-47 |
| Msa0227360 | Msa1101240 | 0.816286 | 5.980034e-52 | -8.615850e-47 |
| Msa0227360 | Msa1102820 | 0.818143 | 2.285559e-52 | -8.615850e-47 |
| Msa0227360 | Msa1104650 | 0.800660 | 1.298870e-48 | -8.615850e-47 |
| Msa0227360 | Msa1107200 | 0.866984 | 1.910591e-65 | -8.615850e-47 |
| Msa0227360 | Msa1109810 | 0.823181 | 1.590349e-53 | -8.615850e-47 |
| Msa0227360 | Msa1150780 | 0.841043 | 6.035523e-58 | -8.615850e-47 |
| Msa0227360 | Msa1171140 | 0.821851 | 3.240633e-53 | -8.615850e-47 |
| Msa0227360 | Msa1180720 | 0.840417 | 8.807286e-58 | -8.615850e-47 |
| Msa0227360 | Msa1183140 | 0.840270 | 9.621689e-58 | -8.615850e-47 |
| Msa0227360 | Msa1208370 | 0.822587 | 2.187716e-53 | -8.615850e-47 |
| Msa0227360 | Msa1208380 | 0.821966 | 3.048543e-53 | -8.615850e-47 |
| Msa0227360 | Msa1208990 | 0.812481 | 4.149367e-51 | -8.615850e-47 |
| Msa0227360 | Msa1212050 | 0.804890 | 1.737983e-49 | -8.615850e-47 |
| Msa0227360 | Msa1214170 | 0.835118 | 2.020890e-56 | -8.615850e-47 |
| Msa0227360 | Msa1220880 | 0.801511 | 8.699731e-49 | -8.615850e-47 |
| Msa0227360 | Msa1229480 | 0.828648 | 7.997973e-55 | -8.615850e-47 |
| Msa0227360 | Msa1231710 | 0.835723 | 1.421508e-56 | -8.615850e-47 |
| Msa0227360 | Msa1232920 | 0.817325 | 3.497276e-52 | -8.615850e-47 |
| Msa0227360 | Msa1236440 | 0.812338 | 4.457302e-51 | -8.615850e-47 |
| Msa0227360 | Msa1239400 | 0.812612 | 3.884224e-51 | -8.615850e-47 |
| Msa0227360 | Msa1259860 | 0.817586 | 3.053368e-52 | -8.615850e-47 |
| Msa0227360 | Msa1260680 | 0.844874 | 5.769061e-59 | -8.615850e-47 |
| Msa0227360 | Msa1266170 | 0.801195 | 1.009812e-48 | -8.615850e-47 |
| Msa0227360 | Msa1272010 | 0.816587 | 5.121027e-52 | -8.615850e-47 |
| Msa0227360 | Msa1275510 | 0.848185 | 7.199861e-60 | -8.615850e-47 |
| Msa0227360 | Msa1277670 | 0.807481 | 4.950339e-50 | -8.615850e-47 |
| Msa0227360 | Msa1286210 | 0.805002 | 1.646945e-49 | -8.615850e-47 |
| Msa0227360 | Msa1298390 | -0.800127 | 1.667575e-48 | -8.615850e-47 |
| Msa0227360 | Msa1309760 | 0.842180 | 3.026682e-58 | -8.615850e-47 |
| Msa0227360 | Msa1312440 | 0.865426 | 5.957827e-65 | -8.615850e-47 |
| Msa0227360 | Msa1316360 | 0.802725 | 4.895446e-49 | -8.615850e-47 |
| Msa0227360 | Msa1332050 | 0.806855 | 6.716499e-50 | -8.615850e-47 |
| Msa0227360 | Msa1335230 | 0.801573 | 8.448571e-49 | -8.615850e-47 |
| Msa0227360 | Msa1352660 | 0.818608 | 1.793812e-52 | -8.615850e-47 |
| Msa0227360 | Msa1355890 | 0.821299 | 4.346561e-53 | -8.615850e-47 |
| Msa0227360 | Msa1360020 | 0.834719 | 2.547482e-56 | -8.615850e-47 |
| Msa0227360 | Msa1368360 | 0.813796 | 2.135366e-51 | -8.615850e-47 |
| Msa0227360 | Msa1369920 | -0.861231 | 1.186775e-63 | -8.615850e-47 |
| Msa0227360 | Msa1397390 | 0.802967 | 4.363639e-49 | -8.615850e-47 |
| Msa0227360 | Msa1407880 | 0.801801 | 7.585802e-49 | -8.615850e-47 |
| Msa0227360 | Msa1412130 | 0.809356 | 1.970631e-50 | -8.615850e-47 |
| Msa0227360 | Msa1421210 | 0.812014 | 5.244843e-51 | -8.615850e-47 |
| Msa0227360 | Msa1423540 | 0.826990 | 2.003215e-54 | -8.615850e-47 |
| Msa0227360 | Msa1424630 | 0.801001 | 1.106370e-48 | -8.615850e-47 |
| Msa0227360 | Msa1430130 | 0.830870 | 2.301926e-55 | -8.615850e-47 |
| Msa0227360 | Msa1430550 | 0.806585 | 7.658192e-50 | -8.615850e-47 |
| Msa0227360 | Msa1437730 | 0.808918 | 2.445512e-50 | -8.615850e-47 |
| Msa0227360 | Msa1438840 | 0.821661 | 3.586102e-53 | -8.615850e-47 |
| Msa0227360 | Msa1460750 | 0.831204 | 1.905266e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227360 | MtrunA17_Chr2g0329071 | 96.888 | 482 | 13 | 1 | 1 | 480 | 1 | 482 | 0.0 | 957 |
| Msa0227360 | MtrunA17_Chr4g0033031 | 72.561 | 492 | 120 | 8 | 1 | 480 | 1 | 489 | 0.0 | 709 |
| Msa0227360 | MtrunA17_Chr3g0136071 | 31.401 | 207 | 119 | 7 | 32 | 232 | 19 | 208 | 8.63e-20 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227360 | AT4G12070.1 | 60.729 | 494 | 161 | 9 | 3 | 477 | 1 | 480 | 0.0 | 575 |
Find 118 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGCAAATGCAAGCCTTTA+TGG | 0.082855 | 2_1:-78259092 | Msa0227360:CDS |
| GAAAGAAAGTTACTTGAATT+TGG | 0.144686 | 2_1:+78259545 | None:intergenic |
| AACAGACACTTGTAGATTAT+TGG | 0.210823 | 2_1:-78258674 | Msa0227360:CDS |
| CATTCGATTGATAAAACTTT+TGG | 0.214288 | 2_1:+78262070 | None:intergenic |
| AAGAGGAATTTGACACAATA+TGG | 0.226321 | 2_1:+78262296 | None:intergenic |
| TTGTTCGAGCAGTTCGTTTA+TGG | 0.226809 | 2_1:-78259037 | Msa0227360:CDS |
| TTCTCCTCCATGTCTTCCTT+TGG | 0.249282 | 2_1:-78258525 | Msa0227360:CDS |
| AGATGGGACCATATAATTAT+TGG | 0.258835 | 2_1:+78257962 | None:intergenic |
| CATGATCATGTTTCACTTTG+AGG | 0.290172 | 2_1:+78262135 | None:intergenic |
| AATGTACCTGCTACACGTTC+AGG | 0.296544 | 2_1:-78258721 | Msa0227360:CDS |
| ATTAATGCAGGTCAAGCTTC+TGG | 0.299561 | 2_1:-78259437 | Msa0227360:CDS |
| TTTATATTCCAATAATTATA+TGG | 0.303248 | 2_1:-78257970 | Msa0227360:three_prime_UTR |
| TGCTACTCTATCTGAAGCTT+TGG | 0.315662 | 2_1:+78259508 | None:intergenic |
| TCTCCTCCATGTCTTCCTTT+GGG | 0.323310 | 2_1:-78258524 | Msa0227360:CDS |
| TTGCCATCTGAAGTTCAAAT+TGG | 0.332426 | 2_1:-78258430 | Msa0227360:CDS |
| TACTGTCCATTCATCTGCTT+TGG | 0.339181 | 2_1:+78262033 | None:intergenic |
| CTTTGAAAGGTGAATTATAT+CGG | 0.339532 | 2_1:+78261945 | None:intergenic |
| ATTTCTCTCTCTCTAGCAAC+TGG | 0.355297 | 2_1:-78258276 | Msa0227360:CDS |
| GCTACTCTATCTGAAGCTTT+GGG | 0.356630 | 2_1:+78259509 | None:intergenic |
| TTCTTCCCCGACGCATCATT+CGG | 0.367188 | 2_1:+78261803 | None:intergenic |
| AGGAAGACATGGAGGAGAAT+TGG | 0.368027 | 2_1:+78258529 | None:intergenic |
| AGAATCTAGAGATTAGTAAA+TGG | 0.384164 | 2_1:+78262418 | None:intergenic |
| GTTGAATGCTTTGAGATTCA+AGG | 0.399457 | 2_1:-78261716 | Msa0227360:intron |
| TACAAAGAACAACAAAATAA+TGG | 0.399644 | 2_1:+78258125 | None:intergenic |
| TGGATGTTCATGAAGACAAT+AGG | 0.400118 | 2_1:+78259410 | None:intergenic |
| TCGAAGAGGCTCCGATGAAT+TGG | 0.407623 | 2_1:-78261849 | Msa0227360:CDS |
| AATTTGACACAATATGGGTT+TGG | 0.409583 | 2_1:+78262302 | None:intergenic |
| TATGAGTTTCATTTGAAAAC+CGG | 0.409910 | 2_1:+78258407 | None:intergenic |
| TTAATGCAGGTCAAGCTTCT+GGG | 0.411481 | 2_1:-78259436 | Msa0227360:CDS |
| TTTCTTCTTATTTAGCTGAC+TGG | 0.411795 | 2_1:-78258055 | Msa0227360:three_prime_UTR |
| AGCTTTGGGGAGGAGCAATA+TGG | 0.411800 | 2_1:+78259523 | None:intergenic |
| TCGGTTGGATCAGAAGCTTC+TGG | 0.416167 | 2_1:+78258370 | None:intergenic |
| GGTAATCCTCAAAACCATAA+AGG | 0.418803 | 2_1:+78259078 | None:intergenic |
| TGAAACCTCGCTAGTGATAT+CGG | 0.425137 | 2_1:+78258351 | None:intergenic |
| ATGGATATGTTTCTTATCCA+TGG | 0.429426 | 2_1:-78259598 | Msa0227360:CDS |
| TAGTGAGTAGGGACTCAGTT+TGG | 0.440285 | 2_1:+78259390 | None:intergenic |
| ATAGAAAGCTCTCCTCCAAC+TGG | 0.440635 | 2_1:+78259008 | None:intergenic |
| AAAGAAGAAGATTCAAAACT+TGG | 0.442147 | 2_1:-78258972 | Msa0227360:CDS |
| ATGACCCGAATTATGTTGTC+GGG | 0.457753 | 2_1:-78261757 | Msa0227360:CDS |
| CCATGGATGGTATCTTCAAC+AGG | 0.458400 | 2_1:-78258619 | Msa0227360:CDS |
| ATCATTTACCTTAGTGAGTA+GGG | 0.465579 | 2_1:+78259379 | None:intergenic |
| AACATAATTCGGGTCATCAA+TGG | 0.466943 | 2_1:+78261763 | None:intergenic |
| AAAACCCGACAACATAATTC+GGG | 0.468163 | 2_1:+78261753 | None:intergenic |
| AGAGGAATTTGACACAATAT+GGG | 0.474481 | 2_1:+78262297 | None:intergenic |
| TCAGAAGCTTCTGGTGGCAA+TGG | 0.477271 | 2_1:+78258379 | None:intergenic |
| GACCTCTTCAGTACGACTAA+TGG | 0.480305 | 2_1:+78258944 | None:intergenic |
| CATCTGAAGTTCAAATTGGC+CGG | 0.481830 | 2_1:-78258426 | Msa0227360:CDS |
| TTTAGAGGAGAAAGAAGAAG+AGG | 0.484665 | 2_1:+78262279 | None:intergenic |
| CATAAAGGCTTGCATTTGCT+AGG | 0.488507 | 2_1:+78259093 | None:intergenic |
| CGTTTATGGTATGCTCCAGT+TGG | 0.489922 | 2_1:-78259023 | Msa0227360:CDS |
| GGCAATGGCTGCAGCACAGA+AGG | 0.495943 | 2_1:+78258448 | None:intergenic |
| CCACTTCTTCCACCTTTGAA+AGG | 0.496983 | 2_1:+78261932 | None:intergenic |
| GTCTGTGCAAGGATAGCTTC+TGG | 0.498058 | 2_1:+78258563 | None:intergenic |
| ATAATGTACACTATTGTACT+AGG | 0.499584 | 2_1:-78258089 | Msa0227360:three_prime_UTR |
| AGCTTCAAGAAGCAGTAGAA+TGG | 0.500970 | 2_1:-78259651 | Msa0227360:CDS |
| CTCAAAGTGAAACATGATCA+TGG | 0.501211 | 2_1:-78262134 | Msa0227360:exon |
| CCTTTCAAAGGTGGAAGAAG+TGG | 0.502285 | 2_1:-78261932 | Msa0227360:CDS |
| ATTGTTCCGAATGATGCGTC+GGG | 0.503672 | 2_1:-78261809 | Msa0227360:CDS |
| CCATGCATTTGCTCTTGCTA+GGG | 0.506175 | 2_1:+78259460 | None:intergenic |
| CAGAAGCTTCTGGTGGCAAT+GGG | 0.506734 | 2_1:+78258380 | None:intergenic |
| TCTTGCATCCTTCTCTCCCA+TGG | 0.511112 | 2_1:+78259581 | None:intergenic |
| ATCTAGAGATTAGTAAATGG+TGG | 0.512523 | 2_1:+78262421 | None:intergenic |
| TTATGGTATGCTCCAGTTGG+AGG | 0.512618 | 2_1:-78259020 | Msa0227360:CDS |
| CTTCCTTTGGGACCGATCGT+TGG | 0.519217 | 2_1:-78258512 | Msa0227360:CDS |
| CGGCCAATTTGAACTTCAGA+TGG | 0.521290 | 2_1:+78258427 | None:intergenic |
| GAAGTTCCAAAGCAGATGAA+TGG | 0.521349 | 2_1:-78262039 | Msa0227360:CDS |
| GATGACCCGAATTATGTTGT+CGG | 0.526077 | 2_1:-78261758 | Msa0227360:CDS |
| GATCATTTACCTTAGTGAGT+AGG | 0.527150 | 2_1:+78259378 | None:intergenic |
| AACTGAGTCCCTACTCACTA+AGG | 0.531054 | 2_1:-78259387 | Msa0227360:CDS |
| TCAAGAAGCGTATAAGAAGA+AGG | 0.533469 | 2_1:-78261894 | Msa0227360:CDS |
| TCCATGCATTTGCTCTTGCT+AGG | 0.533509 | 2_1:+78259459 | None:intergenic |
| GCAAATGCATGGATTAATGC+AGG | 0.538218 | 2_1:-78259449 | Msa0227360:CDS |
| ATGTACCTGCTACACGTTCA+GGG | 0.538477 | 2_1:-78258720 | Msa0227360:CDS |
| TTTCTTATCCATGGGAGAGA+AGG | 0.539848 | 2_1:-78259589 | Msa0227360:CDS |
| GCATTTGATTTGTAGAACAA+TGG | 0.540004 | 2_1:-78258173 | Msa0227360:three_prime_UTR |
| CGCCATTAGTCGTACTGAAG+AGG | 0.541414 | 2_1:-78258946 | Msa0227360:intron |
| CGATATAATTCACCTTTCAA+AGG | 0.544816 | 2_1:-78261944 | Msa0227360:CDS |
| TTGTAACTCCGCCAATTCAT+CGG | 0.546054 | 2_1:+78261838 | None:intergenic |
| TATAATTCACCTTTCAAAGG+TGG | 0.547775 | 2_1:-78261941 | Msa0227360:CDS |
| TGGATATGTTTCTTATCCAT+GGG | 0.548252 | 2_1:-78259597 | Msa0227360:CDS |
| ACAGTAGATATGCTACAAAC+CGG | 0.548907 | 2_1:-78262016 | Msa0227360:CDS |
| ACCTCGCTAGTGATATCGGT+TGG | 0.551736 | 2_1:+78258355 | None:intergenic |
| CTTAGCCCTGAACGTGTAGC+AGG | 0.552589 | 2_1:+78258715 | None:intergenic |
| AACTCTGGTGTGTCTGTGCA+AGG | 0.563105 | 2_1:+78258552 | None:intergenic |
| CAAGGATAGCTTCTGGCTCA+AGG | 0.563411 | 2_1:+78258570 | None:intergenic |
| TATTGTTCCGAATGATGCGT+CGG | 0.564442 | 2_1:-78261810 | Msa0227360:CDS |
| ACAAGGACAAAACTACAAGA+TGG | 0.571738 | 2_1:-78259617 | Msa0227360:CDS |
| AAGAGGCTCCGATGAATTGG+CGG | 0.571900 | 2_1:-78261846 | Msa0227360:CDS |
| ATGGAGGAGAATTGGAACTC+TGG | 0.573386 | 2_1:+78258537 | None:intergenic |
| GAAATCATGAAATCTGAATG+AGG | 0.576150 | 2_1:+78258294 | None:intergenic |
| CCTGTTGAAGATACCATCCA+TGG | 0.578338 | 2_1:+78258619 | None:intergenic |
| CCCTAGCAAGAGCAAATGCA+TGG | 0.578440 | 2_1:-78259460 | Msa0227360:CDS |
| AAGCTCTTCGACTATGTCGC+CGG | 0.580294 | 2_1:+78261997 | None:intergenic |
| CAACACCTATGTCTATTCCA+TGG | 0.584176 | 2_1:+78259057 | None:intergenic |
| ATAGTCGAAGAGCTTCGAAT+CGG | 0.585608 | 2_1:-78261989 | Msa0227360:CDS |
| TTTGTTTGGAAAACATAGAG+AGG | 0.592502 | 2_1:+78262246 | None:intergenic |
| TAATGCAGGTCAAGCTTCTG+GGG | 0.594138 | 2_1:-78259435 | Msa0227360:CDS |
| TCTAGAGATTAGTAAATGGT+GGG | 0.596630 | 2_1:+78262422 | None:intergenic |
| CTACTCTATCTGAAGCTTTG+GGG | 0.596829 | 2_1:+78259510 | None:intergenic |
| CGTTGGTTAATTCAAGCGGT+GGG | 0.598754 | 2_1:-78258495 | Msa0227360:CDS |
| ATTTGAACTTCAGATGGCAA+TGG | 0.598877 | 2_1:+78258433 | None:intergenic |
| TCGTTGGTTAATTCAAGCGG+TGG | 0.599562 | 2_1:-78258496 | Msa0227360:CDS |
| GATTACCATGGAATAGACAT+AGG | 0.600024 | 2_1:-78259062 | Msa0227360:CDS |
| AGGCTTGAGAGAGATACAGC+TGG | 0.610095 | 2_1:-78258322 | Msa0227360:CDS |
| ATCGGTCCCAAAGGAAGACA+TGG | 0.611774 | 2_1:+78258518 | None:intergenic |
| CGATCGTTGGTTAATTCAAG+CGG | 0.619505 | 2_1:-78258499 | Msa0227360:CDS |
| TAACCAACGATCGGTCCCAA+AGG | 0.619719 | 2_1:+78258509 | None:intergenic |
| GAATGGTAAATGCACTAACA+AGG | 0.621103 | 2_1:-78259634 | Msa0227360:CDS |
| CTCTATCTGAAGCTTTGGGG+AGG | 0.627339 | 2_1:+78259513 | None:intergenic |
| CGCTTGAATTAACCAACGAT+CGG | 0.631713 | 2_1:+78258500 | None:intergenic |
| TTTCTCTCTCTCTAGCAACT+GGG | 0.634700 | 2_1:-78258275 | Msa0227360:CDS |
| CTAGCGAGGTTTCACAATCG+AGG | 0.649633 | 2_1:-78258342 | Msa0227360:CDS |
| ATAATGATTCGAGTTCGAAG+AGG | 0.657808 | 2_1:-78261863 | Msa0227360:CDS |
| TCCAACCGATATCACTAGCG+AGG | 0.687705 | 2_1:-78258356 | Msa0227360:CDS |
| GTTGGATCAGAAGCTTCTGG+TGG | 0.702542 | 2_1:+78258373 | None:intergenic |
| TTGTTCCGAATGATGCGTCG+GGG | 0.714999 | 2_1:-78261808 | Msa0227360:CDS |
| GGTCCCAAAGGAAGACATGG+AGG | 0.715574 | 2_1:+78258521 | None:intergenic |
| TTATCAATCGAATGTCTACG+AGG | 0.747317 | 2_1:-78262061 | Msa0227360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATATGTATGATAAATT+TGG | + | chr2_1:78258225-78258244 | None:intergenic | 10.0% |
| !!! | AGTCTAATTTTTTAAAAAAT+TGG | + | chr2_1:78259776-78259795 | None:intergenic | 10.0% |
| !! | AAAAATTAGACTATAAATAT+AGG | - | chr2_1:78259784-78259803 | Msa0227360:intron | 10.0% |
| !!! | ATAATTTTATTGTAATATAC+AGG | - | chr2_1:78261619-78261638 | Msa0227360:intron | 10.0% |
| !!! | TAATTTTATTGTAATATACA+GGG | - | chr2_1:78261620-78261639 | Msa0227360:intron | 10.0% |
| !! | TTTATATTCCAATAATTATA+TGG | - | chr2_1:78262428-78262447 | Msa0227360:five_prime_UTR | 10.0% |
| !!! | TTCTTAAATATTTTTCAGAT+GGG | - | chr2_1:78258014-78258033 | Msa0227360:three_prime_UTR | 15.0% |
| !!! | AATTTTGAGTTATTTTATGA+AGG | + | chr2_1:78258190-78258209 | None:intergenic | 15.0% |
| !! | AATTAGAATTCTATAAACAA+GGG | + | chr2_1:78258909-78258928 | None:intergenic | 15.0% |
| !! | AAATTAGAATTCTATAAACA+AGG | + | chr2_1:78258910-78258929 | None:intergenic | 15.0% |
| !!! | TTTTTAAAAGATTTTTTCTC+CGG | - | chr2_1:78258927-78258946 | Msa0227360:intron | 15.0% |
| !!! | TAATGAATTTTATCTAAAGA+CGG | + | chr2_1:78258989-78259008 | None:intergenic | 15.0% |
| !! | ATGACATTATAAAAAGTTAT+TGG | + | chr2_1:78259686-78259705 | None:intergenic | 15.0% |
| !! | AGTTAATTATAATTAGTTGT+TGG | - | chr2_1:78260284-78260303 | Msa0227360:intron | 15.0% |
| !! | TTGATTATATAGTGATTATA+AGG | - | chr2_1:78260307-78260326 | Msa0227360:intron | 15.0% |
| !! | ATTATAAGGTAATTAATTGT+TGG | - | chr2_1:78260321-78260340 | Msa0227360:intron | 15.0% |
| !! | TATAATACATATAGTTAAAG+AGG | - | chr2_1:78261569-78261588 | Msa0227360:intron | 15.0% |
| !! | CATCTGAAAAATATTTAAGA+AGG | + | chr2_1:78258015-78258034 | None:intergenic | 20.0% |
| !!! | CTTCTTAAATATTTTTCAGA+TGG | - | chr2_1:78258013-78258032 | Msa0227360:three_prime_UTR | 20.0% |
| !!! | ATTCGATTGATAAAACTTTT+GGG | + | chr2_1:78258330-78258349 | None:intergenic | 20.0% |
| !! | TTAATCGAACTTTGAATTAT+TGG | + | chr2_1:78258799-78258818 | None:intergenic | 20.0% |
| !!! | TATCTGAATCGAAAAATTTT+AGG | + | chr2_1:78258841-78258860 | None:intergenic | 20.0% |
| !!! | AGGAATTTATTTTTTTGACT+TGG | - | chr2_1:78259228-78259247 | Msa0227360:intron | 20.0% |
| !!! | GGAATTTATTTTTTTGACTT+GGG | - | chr2_1:78259229-78259248 | Msa0227360:intron | 20.0% |
| !!! | GAATTTATTTTTTTGACTTG+GGG | - | chr2_1:78259230-78259249 | Msa0227360:intron | 20.0% |
| !!! | AGAATAATTTTTACAGTTGA+GGG | - | chr2_1:78259273-78259292 | Msa0227360:intron | 20.0% |
| !!! | TGTTTTTAGGACAAATATTT+TGG | - | chr2_1:78259331-78259350 | Msa0227360:intron | 20.0% |
| !! | TTCAAGAACTAACTTAAAAA+AGG | + | chr2_1:78259469-78259488 | None:intergenic | 20.0% |
| !! | AATGTAATTTAATTAGATGC+AGG | - | chr2_1:78259501-78259520 | Msa0227360:CDS | 20.0% |
| !!! | CACATTTTAACTTTTAACAA+AGG | + | chr2_1:78259564-78259583 | None:intergenic | 20.0% |
| !!! | TTATTTTCCCTAATTATGAT+TGG | + | chr2_1:78259813-78259832 | None:intergenic | 20.0% |
| !! | ATAGGGTTTAATAAAAGAAA+AGG | + | chr2_1:78259862-78259881 | None:intergenic | 20.0% |
| !! | AGATGAATTTCATTTCTATA+TGG | + | chr2_1:78259926-78259945 | None:intergenic | 20.0% |
| !! | AGATGTTATAGATAAATGTT+CGG | - | chr2_1:78260211-78260230 | Msa0227360:intron | 20.0% |
| !!! | AATTGGTGATTTATTAGATT+CGG | - | chr2_1:78260237-78260256 | Msa0227360:intron | 20.0% |
| !! | AAGAATTTCAATTGATTGTA+AGG | - | chr2_1:78260489-78260508 | Msa0227360:intron | 20.0% |
| !! | TACAAAGAACAACAAAATAA+TGG | + | chr2_1:78262276-78262295 | None:intergenic | 20.0% |
| ! | AGAATCTAGAGATTAGTAAA+TGG | + | chr2_1:78257983-78258002 | None:intergenic | 25.0% |
| !!! | AGAGGTTTTTATGTTTTTAG+AGG | + | chr2_1:78258137-78258156 | None:intergenic | 25.0% |
| !!! | TTTGAGTTATTTTATGAAGG+TGG | + | chr2_1:78258187-78258206 | None:intergenic | 25.0% |
| !! | CATTCGATTGATAAAACTTT+TGG | + | chr2_1:78258331-78258350 | None:intergenic | 25.0% |
| !! | CTTTGAAAGGTGAATTATAT+CGG | + | chr2_1:78258456-78258475 | None:intergenic | 25.0% |
| ! | AAAGTCAAAAAGCAAAAGAA+AGG | + | chr2_1:78258730-78258749 | None:intergenic | 25.0% |
| ! | TAATTCAAAGTTCGATTAAG+AGG | - | chr2_1:78258800-78258819 | Msa0227360:intron | 25.0% |
| !! | TTTTAAACGATTCGTCTTTA+AGG | - | chr2_1:78258878-78258897 | Msa0227360:intron | 25.0% |
| ! | GCTAAATCAATTAGTTAGTT+TGG | - | chr2_1:78259018-78259037 | Msa0227360:CDS | 25.0% |
| ! | AAAGGAAATAAAAATGTAGC+GGG | + | chr2_1:78259103-78259122 | None:intergenic | 25.0% |
| ! | GAAAGGAAATAAAAATGTAG+CGG | + | chr2_1:78259104-78259123 | None:intergenic | 25.0% |
| !! | CTTGTTTGTTTCAACTTTTA+AGG | - | chr2_1:78259168-78259187 | Msa0227360:intron | 25.0% |
| !! | GAGAATAATTTTTACAGTTG+AGG | - | chr2_1:78259272-78259291 | Msa0227360:intron | 25.0% |
| ! | AGATTTACATCATGTCAATT+TGG | - | chr2_1:78259595-78259614 | Msa0227360:CDS | 25.0% |
| ! | ATTTCATTTCTATATGGAGT+AGG | + | chr2_1:78259920-78259939 | None:intergenic | 25.0% |
| ! | TATATATCTATAGCAAAGTG+GGG | + | chr2_1:78260192-78260211 | None:intergenic | 25.0% |
| ! | CTATATATCTATAGCAAAGT+GGG | + | chr2_1:78260193-78260212 | None:intergenic | 25.0% |
| ! | TCTATATATCTATAGCAAAG+TGG | + | chr2_1:78260194-78260213 | None:intergenic | 25.0% |
| ! | AGATAAATGTTCGGTATAAT+TGG | - | chr2_1:78260220-78260239 | Msa0227360:intron | 25.0% |
| ! | ATTGTAAAAATGTCTCACAT+AGG | - | chr2_1:78260418-78260437 | Msa0227360:intron | 25.0% |
| ! | GAAAGAAAGTTACTTGAATT+TGG | + | chr2_1:78260856-78260875 | None:intergenic | 25.0% |
| ! | TTAACTTAATCAACTAAGCT+TGG | - | chr2_1:78261065-78261084 | Msa0227360:intron | 25.0% |
| ! | TAACTTAATCAACTAAGCTT+GGG | - | chr2_1:78261066-78261085 | Msa0227360:intron | 25.0% |
| ! | AAAGAAGAAGATTCAAAACT+TGG | - | chr2_1:78261426-78261445 | Msa0227360:intron | 25.0% |
| ! | TATGAGTTTCATTTGAAAAC+CGG | + | chr2_1:78261994-78262013 | None:intergenic | 25.0% |
| ! | ATAATGTACACTATTGTACT+AGG | - | chr2_1:78262309-78262328 | Msa0227360:five_prime_UTR | 25.0% |
| TCTAGAGATTAGTAAATGGT+GGG | + | chr2_1:78257979-78257998 | None:intergenic | 30.0% | |
| ATCTAGAGATTAGTAAATGG+TGG | + | chr2_1:78257980-78257999 | None:intergenic | 30.0% | |
| AATTTGACACAATATGGGTT+TGG | + | chr2_1:78258099-78258118 | None:intergenic | 30.0% | |
| AGAGGAATTTGACACAATAT+GGG | + | chr2_1:78258104-78258123 | None:intergenic | 30.0% | |
| AAGAGGAATTTGACACAATA+TGG | + | chr2_1:78258105-78258124 | None:intergenic | 30.0% | |
| TTTGTTTGGAAAACATAGAG+AGG | + | chr2_1:78258155-78258174 | None:intergenic | 30.0% | |
| !! | TTGATAAAACTTTTGGGTCT+CGG | + | chr2_1:78258324-78258343 | None:intergenic | 30.0% |
| CGATATAATTCACCTTTCAA+AGG | - | chr2_1:78258454-78258473 | Msa0227360:CDS | 30.0% | |
| TATAATTCACCTTTCAAAGG+TGG | - | chr2_1:78258457-78258476 | Msa0227360:CDS | 30.0% | |
| AAAAACCCGACAACATAATT+CGG | + | chr2_1:78258649-78258668 | None:intergenic | 30.0% | |
| CAAGTAGCAAACTATGTAAT+CGG | - | chr2_1:78259203-78259222 | Msa0227360:intron | 30.0% | |
| AAGTAGCAAACTATGTAATC+GGG | - | chr2_1:78259204-78259223 | Msa0227360:intron | 30.0% | |
| ! | GCTGAAATGTACATGTTTTT+AGG | - | chr2_1:78259318-78259337 | Msa0227360:intron | 30.0% |
| TAGAAATCAAACAAATGCAG+CGG | + | chr2_1:78259368-78259387 | None:intergenic | 30.0% | |
| ! | TGTTTGATTTCTATGACTGA+CGG | - | chr2_1:78259375-78259394 | Msa0227360:CDS | 30.0% |
| TGCAGGTGTAAAAATTTACA+CGG | - | chr2_1:78259518-78259537 | Msa0227360:CDS | 30.0% | |
| CATGTCAATTTGGATACATT+AGG | - | chr2_1:78259605-78259624 | Msa0227360:CDS | 30.0% | |
| ATAGGACTCCAATCATAATT+AGG | - | chr2_1:78259802-78259821 | Msa0227360:intron | 30.0% | |
| TAGGACTCCAATCATAATTA+GGG | - | chr2_1:78259803-78259822 | Msa0227360:intron | 30.0% | |
| ACAACTCACATGATAAGATA+GGG | + | chr2_1:78259879-78259898 | None:intergenic | 30.0% | |
| AACAACTCACATGATAAGAT+AGG | + | chr2_1:78259880-78259899 | None:intergenic | 30.0% | |
| AACAAAGTGACATAAATTGC+TGG | + | chr2_1:78259972-78259991 | None:intergenic | 30.0% | |
| !! | TTATGTCACTTTGTTTGAAC+TGG | - | chr2_1:78259977-78259996 | Msa0227360:intron | 30.0% |
| CTTTGTTGAATGTTGACAAT+AGG | - | chr2_1:78260004-78260023 | Msa0227360:intron | 30.0% | |
| !! | ATGTTTTTGCCTCAAACAAA+AGG | + | chr2_1:78260035-78260054 | None:intergenic | 30.0% |
| !! | CAACACTAGTTCTATCTAAT+GGG | + | chr2_1:78260392-78260411 | None:intergenic | 30.0% |
| AAGTCTTCAATCAGAAATGT+CGG | + | chr2_1:78260537-78260556 | None:intergenic | 30.0% | |
| TTTCTGATTGAAGACTTGTA+AGG | - | chr2_1:78260540-78260559 | Msa0227360:intron | 30.0% | |
| ATGGATATGTTTCTTATCCA+TGG | - | chr2_1:78260800-78260819 | Msa0227360:intron | 30.0% | |
| TGGATATGTTTCTTATCCAT+GGG | - | chr2_1:78260801-78260820 | Msa0227360:intron | 30.0% | |
| ATCATTTACCTTAGTGAGTA+GGG | + | chr2_1:78261022-78261041 | None:intergenic | 30.0% | |
| CACACAAAAAAAGACTTAGT+AGG | - | chr2_1:78261042-78261061 | Msa0227360:intron | 30.0% | |
| ! | GAGAATCGAAAACTCATTTT+TGG | - | chr2_1:78261088-78261107 | Msa0227360:intron | 30.0% |
| AACCACTTAAGTTACATGTT+TGG | + | chr2_1:78261125-78261144 | None:intergenic | 30.0% | |
| TAACATGACATACTAACACA+TGG | - | chr2_1:78261202-78261221 | Msa0227360:intron | 30.0% | |
| AACAGACACTTGTAGATTAT+TGG | - | chr2_1:78261724-78261743 | Msa0227360:CDS | 30.0% | |
| GAAATCATGAAATCTGAATG+AGG | + | chr2_1:78262107-78262126 | None:intergenic | 30.0% | |
| !! | GCATTTGATTTGTAGAACAA+TGG | - | chr2_1:78262225-78262244 | Msa0227360:five_prime_UTR | 30.0% |
| ! | TTTCTTCTTATTTAGCTGAC+TGG | - | chr2_1:78262343-78262362 | Msa0227360:five_prime_UTR | 30.0% |
| ! | TAATGTGTTTTGTCTATGTG+AGG | - | chr2_1:78262398-78262417 | Msa0227360:five_prime_UTR | 30.0% |
| AGATGGGACCATATAATTAT+TGG | + | chr2_1:78262439-78262458 | None:intergenic | 30.0% | |
| TTTAGAGGAGAAAGAAGAAG+AGG | + | chr2_1:78258122-78258141 | None:intergenic | 35.0% | |
| !!! | GGTGGTTTTTTTCGTTTGTT+TGG | + | chr2_1:78258169-78258188 | None:intergenic | 35.0% |
| CATGATCATGTTTCACTTTG+AGG | + | chr2_1:78258266-78258285 | None:intergenic | 35.0% | |
| CTCAAAGTGAAACATGATCA+TGG | - | chr2_1:78258264-78258283 | Msa0227360:exon | 35.0% | |
| !! | TGATAAAACTTTTGGGTCTC+GGG | + | chr2_1:78258323-78258342 | None:intergenic | 35.0% |
| TTATCAATCGAATGTCTACG+AGG | - | chr2_1:78258337-78258356 | Msa0227360:CDS | 35.0% | |
| ACAGTAGATATGCTACAAAC+CGG | - | chr2_1:78258382-78258401 | Msa0227360:CDS | 35.0% | |
| ! | TCAAGAAGCGTATAAGAAGA+AGG | - | chr2_1:78258504-78258523 | Msa0227360:CDS | 35.0% |
| ! | ATAATGATTCGAGTTCGAAG+AGG | - | chr2_1:78258535-78258554 | Msa0227360:CDS | 35.0% |
| AACATAATTCGGGTCATCAA+TGG | + | chr2_1:78258638-78258657 | None:intergenic | 35.0% | |
| AAAACCCGACAACATAATTC+GGG | + | chr2_1:78258648-78258667 | None:intergenic | 35.0% | |
| ! | GAATTATGTTGTCGGGTTTT+TGG | - | chr2_1:78258648-78258667 | Msa0227360:CDS | 35.0% |
| !! | GTTGAATGCTTTGAGATTCA+AGG | - | chr2_1:78258682-78258701 | Msa0227360:CDS | 35.0% |
| AAAAGAAAGGAAGTTGAGGT+TGG | + | chr2_1:78258717-78258736 | None:intergenic | 35.0% | |
| AAGCAAAAGAAAGGAAGTTG+AGG | + | chr2_1:78258721-78258740 | None:intergenic | 35.0% | |
| TGAAGTAAATCACGTGAGAA+AGG | + | chr2_1:78259121-78259140 | None:intergenic | 35.0% | |
| !!! | TGACTGACGGCAATTTTTTT+TGG | - | chr2_1:78259388-78259407 | Msa0227360:CDS | 35.0% |
| ATGAAACTTGTGATGTCACA+TGG | - | chr2_1:78260110-78260129 | Msa0227360:intron | 35.0% | |
| TGAAACTTGTGATGTCACAT+GGG | - | chr2_1:78260111-78260130 | Msa0227360:intron | 35.0% | |
| GTGGGGATGTAATAAAAAGT+GGG | + | chr2_1:78260175-78260194 | None:intergenic | 35.0% | |
| AGTGGGGATGTAATAAAAAG+TGG | + | chr2_1:78260176-78260195 | None:intergenic | 35.0% | |
| ! | GATTCGGTTTGATATTGATC+AGG | - | chr2_1:78260253-78260272 | Msa0227360:intron | 35.0% |
| !! | CCAACACTAGTTCTATCTAA+TGG | + | chr2_1:78260393-78260412 | None:intergenic | 35.0% |
| CCATTAGATAGAACTAGTGT+TGG | - | chr2_1:78260390-78260409 | Msa0227360:intron | 35.0% | |
| ! | TTTCTTCTTTCCTTTTGCGT+GGG | + | chr2_1:78260454-78260473 | None:intergenic | 35.0% |
| GAAAGAAGAAAGATTTGTCG+TGG | - | chr2_1:78260463-78260482 | Msa0227360:intron | 35.0% | |
| CTTCTTGAAGCTGAAAATTG+TGG | + | chr2_1:78260739-78260758 | None:intergenic | 35.0% | |
| GAATGGTAAATGCACTAACA+AGG | - | chr2_1:78260764-78260783 | Msa0227360:intron | 35.0% | |
| ACAAGGACAAAACTACAAGA+TGG | - | chr2_1:78260781-78260800 | Msa0227360:intron | 35.0% | |
| TGGATGTTCATGAAGACAAT+AGG | + | chr2_1:78260991-78261010 | None:intergenic | 35.0% | |
| GATCATTTACCTTAGTGAGT+AGG | + | chr2_1:78261023-78261042 | None:intergenic | 35.0% | |
| CTCCAAACATGTAACTTAAG+TGG | - | chr2_1:78261120-78261139 | Msa0227360:intron | 35.0% | |
| ACATTCGAAGAAGTTTGAGA+AGG | - | chr2_1:78261153-78261172 | Msa0227360:intron | 35.0% | |
| GAAGTTTGAGAAGGAAGTTT+AGG | - | chr2_1:78261162-78261181 | Msa0227360:intron | 35.0% | |
| ! | TTGAGAAGGAAGTTTAGGAT+TGG | - | chr2_1:78261167-78261186 | Msa0227360:intron | 35.0% |
| GTGTTAGTATGTCATGTTAG+AGG | + | chr2_1:78261201-78261220 | None:intergenic | 35.0% | |
| GGTAATCCTCAAAACCATAA+AGG | + | chr2_1:78261323-78261342 | None:intergenic | 35.0% | |
| !!! | TATGGTTTTGAGGATTACCA+TGG | - | chr2_1:78261324-78261343 | Msa0227360:intron | 35.0% |
| GATTACCATGGAATAGACAT+AGG | - | chr2_1:78261336-78261355 | Msa0227360:intron | 35.0% | |
| ATAATCGACAAGAGAAGAGA+TGG | + | chr2_1:78261487-78261506 | None:intergenic | 35.0% | |
| !! | CAAACCAAAAAGTACTTCCA+TGG | - | chr2_1:78261762-78261781 | Msa0227360:CDS | 35.0% |
| ATTTGAACTTCAGATGGCAA+TGG | + | chr2_1:78261968-78261987 | None:intergenic | 35.0% | |
| ! | TTGCCATCTGAAGTTCAAAT+TGG | - | chr2_1:78261968-78261987 | Msa0227360:CDS | 35.0% |
| GAAGTTCCAAAGCAGATGAA+TGG | - | chr2_1:78258359-78258378 | Msa0227360:CDS | 40.0% | |
| TACTGTCCATTCATCTGCTT+TGG | + | chr2_1:78258368-78258387 | None:intergenic | 40.0% | |
| ATAGTCGAAGAGCTTCGAAT+CGG | - | chr2_1:78258409-78258428 | Msa0227360:CDS | 40.0% | |
| TTGTAACTCCGCCAATTCAT+CGG | + | chr2_1:78258563-78258582 | None:intergenic | 40.0% | |
| TATTGTTCCGAATGATGCGT+CGG | - | chr2_1:78258588-78258607 | Msa0227360:CDS | 40.0% | |
| GATGACCCGAATTATGTTGT+CGG | - | chr2_1:78258640-78258659 | Msa0227360:CDS | 40.0% | |
| ATGACCCGAATTATGTTGTC+GGG | - | chr2_1:78258641-78258660 | Msa0227360:CDS | 40.0% | |
| GAACAGAACTTCATCGTCAT+CGG | + | chr2_1:78258777-78258796 | None:intergenic | 40.0% | |
| CGTGTGGCAATAATCTTAAC+AGG | - | chr2_1:78259143-78259162 | Msa0227360:intron | 40.0% | |
| AGCAAACTATGTAATCGGGA+AGG | - | chr2_1:78259208-78259227 | Msa0227360:intron | 40.0% | |
| !!! | TTTTGACTTGGGGTGTAAGT+TGG | - | chr2_1:78259240-78259259 | Msa0227360:intron | 40.0% |
| ! | GTCACTTTGTTTGAACTGGT+TGG | - | chr2_1:78259981-78260000 | Msa0227360:intron | 40.0% |
| TTTGCCTCAAACAAAAGGTG+TGG | + | chr2_1:78260030-78260049 | None:intergenic | 40.0% | |
| TACATCATTCATGTGCAGCA+AGG | + | chr2_1:78260138-78260157 | None:intergenic | 40.0% | |
| ! | CTTTCTTCTTTCCTTTTGCG+TGG | + | chr2_1:78260455-78260474 | None:intergenic | 40.0% |
| ! | ATGAAGCACTAACACAGACA+CGG | + | chr2_1:78260648-78260667 | None:intergenic | 40.0% |
| AGCTTCAAGAAGCAGTAGAA+TGG | - | chr2_1:78260747-78260766 | Msa0227360:intron | 40.0% | |
| TTTCTTATCCATGGGAGAGA+AGG | - | chr2_1:78260809-78260828 | Msa0227360:intron | 40.0% | |
| ! | CTACTCTATCTGAAGCTTTG+GGG | + | chr2_1:78260891-78260910 | None:intergenic | 40.0% |
| ! | GCTACTCTATCTGAAGCTTT+GGG | + | chr2_1:78260892-78260911 | None:intergenic | 40.0% |
| ! | TGCTACTCTATCTGAAGCTT+TGG | + | chr2_1:78260893-78260912 | None:intergenic | 40.0% |
| ! | GCAAATGCATGGATTAATGC+AGG | - | chr2_1:78260949-78260968 | Msa0227360:intron | 40.0% |
| ATTAATGCAGGTCAAGCTTC+TGG | - | chr2_1:78260961-78260980 | Msa0227360:intron | 40.0% | |
| TTAATGCAGGTCAAGCTTCT+GGG | - | chr2_1:78260962-78260981 | Msa0227360:intron | 40.0% | |
| CCAGATATCTGTCACACAAA+CGG | + | chr2_1:78261234-78261253 | None:intergenic | 40.0% | |
| CATAAAGGCTTGCATTTGCT+AGG | + | chr2_1:78261308-78261327 | None:intergenic | 40.0% | |
| CTAGCAAATGCAAGCCTTTA+TGG | - | chr2_1:78261306-78261325 | Msa0227360:intron | 40.0% | |
| !! | TGCAAGCCTTTATGGTTTTG+AGG | - | chr2_1:78261314-78261333 | Msa0227360:intron | 40.0% |
| CAACACCTATGTCTATTCCA+TGG | + | chr2_1:78261344-78261363 | None:intergenic | 40.0% | |
| TTGTTCGAGCAGTTCGTTTA+TGG | - | chr2_1:78261361-78261380 | Msa0227360:intron | 40.0% | |
| !!! | CCATCCATGGAAGTACTTTT+TGG | + | chr2_1:78261769-78261788 | None:intergenic | 40.0% |
| !! | CCAAAAAGTACTTCCATGGA+TGG | - | chr2_1:78261766-78261785 | Msa0227360:CDS | 40.0% |
| CGCTTGAATTAACCAACGAT+CGG | + | chr2_1:78261901-78261920 | None:intergenic | 40.0% | |
| ! | CGATCGTTGGTTAATTCAAG+CGG | - | chr2_1:78261899-78261918 | Msa0227360:CDS | 40.0% |
| ! | CATCTGAAGTTCAAATTGGC+CGG | - | chr2_1:78261972-78261991 | Msa0227360:CDS | 40.0% |
| TGAAACCTCGCTAGTGATAT+CGG | + | chr2_1:78262050-78262069 | None:intergenic | 40.0% | |
| ATTTCTCTCTCTCTAGCAAC+TGG | - | chr2_1:78262122-78262141 | Msa0227360:CDS | 40.0% | |
| TTTCTCTCTCTCTAGCAACT+GGG | - | chr2_1:78262123-78262142 | Msa0227360:CDS | 40.0% | |
| ! | GTGTTTTGTCTATGTGAGGT+TGG | - | chr2_1:78262402-78262421 | Msa0227360:five_prime_UTR | 40.0% |
| !! | AAAACTTTTGGGTCTCGGGT+TGG | + | chr2_1:78258319-78258338 | None:intergenic | 45.0% |
| CCACTTCTTCCACCTTTGAA+AGG | + | chr2_1:78258469-78258488 | None:intergenic | 45.0% | |
| CCTTTCAAAGGTGGAAGAAG+TGG | - | chr2_1:78258466-78258485 | Msa0227360:CDS | 45.0% | |
| ATTGTTCCGAATGATGCGTC+GGG | - | chr2_1:78258589-78258608 | Msa0227360:CDS | 45.0% | |
| !!! | TTCTCCGGTTTTGAGCAAGA+TGG | - | chr2_1:78258942-78258961 | Msa0227360:intron | 45.0% |
| !!! | TCTCCGGTTTTGAGCAAGAT+GGG | - | chr2_1:78258943-78258962 | Msa0227360:intron | 45.0% |
| CGTGATTTACTTCACACGTG+TGG | - | chr2_1:78259127-78259146 | Msa0227360:intron | 45.0% | |
| !! | TAGGCCACACCTTTTGTTTG+AGG | - | chr2_1:78260023-78260042 | Msa0227360:intron | 45.0% |
| AAAGAACACACCCACGCAAA+AGG | - | chr2_1:78260441-78260460 | Msa0227360:intron | 45.0% | |
| TGACGTGTCAGTGTTGTGTA+TGG | - | chr2_1:78260619-78260638 | Msa0227360:intron | 45.0% | |
| CCATGCATTTGCTCTTGCTA+GGG | + | chr2_1:78260941-78260960 | None:intergenic | 45.0% | |
| TCCATGCATTTGCTCTTGCT+AGG | + | chr2_1:78260942-78260961 | None:intergenic | 45.0% | |
| TAATGCAGGTCAAGCTTCTG+GGG | - | chr2_1:78260963-78260982 | Msa0227360:intron | 45.0% | |
| TAGTGAGTAGGGACTCAGTT+TGG | + | chr2_1:78261011-78261030 | None:intergenic | 45.0% | |
| AACTGAGTCCCTACTCACTA+AGG | - | chr2_1:78261011-78261030 | Msa0227360:intron | 45.0% | |
| CCGTTTGTGTGACAGATATC+TGG | - | chr2_1:78261231-78261250 | Msa0227360:intron | 45.0% | |
| CGTTTATGGTATGCTCCAGT+TGG | - | chr2_1:78261375-78261394 | Msa0227360:intron | 45.0% | |
| TTATGGTATGCTCCAGTTGG+AGG | - | chr2_1:78261378-78261397 | Msa0227360:intron | 45.0% | |
| ATAGAAAGCTCTCCTCCAAC+TGG | + | chr2_1:78261393-78261412 | None:intergenic | 45.0% | |
| GACCTCTTCAGTACGACTAA+TGG | + | chr2_1:78261457-78261476 | None:intergenic | 45.0% | |
| AATGTACCTGCTACACGTTC+AGG | - | chr2_1:78261677-78261696 | Msa0227360:intron | 45.0% | |
| ATGTACCTGCTACACGTTCA+GGG | - | chr2_1:78261678-78261697 | Msa0227360:intron | 45.0% | |
| CCTGTTGAAGATACCATCCA+TGG | + | chr2_1:78261782-78261801 | None:intergenic | 45.0% | |
| CCATGGATGGTATCTTCAAC+AGG | - | chr2_1:78261779-78261798 | Msa0227360:CDS | 45.0% | |
| ATGGAGGAGAATTGGAACTC+TGG | + | chr2_1:78261864-78261883 | None:intergenic | 45.0% | |
| AGGAAGACATGGAGGAGAAT+TGG | + | chr2_1:78261872-78261891 | None:intergenic | 45.0% | |
| TTCTCCTCCATGTCTTCCTT+TGG | - | chr2_1:78261873-78261892 | Msa0227360:CDS | 45.0% | |
| TCTCCTCCATGTCTTCCTTT+GGG | - | chr2_1:78261874-78261893 | Msa0227360:CDS | 45.0% | |
| ! | TCGTTGGTTAATTCAAGCGG+TGG | - | chr2_1:78261902-78261921 | Msa0227360:CDS | 45.0% |
| ! | CGTTGGTTAATTCAAGCGGT+GGG | - | chr2_1:78261903-78261922 | Msa0227360:CDS | 45.0% |
| CGGCCAATTTGAACTTCAGA+TGG | + | chr2_1:78261974-78261993 | None:intergenic | 45.0% | |
| !!! | TTTTTTAAGAAAAATATAAA+CGG | + | chr2_1:78259633-78259652 | None:intergenic | 5.0% |
| !!! | TCATTTTATTAAATTATTAT+CGG | - | chr2_1:78260593-78260612 | Msa0227360:intron | 5.0% |
| AAGCTCTTCGACTATGTCGC+CGG | + | chr2_1:78258404-78258423 | None:intergenic | 50.0% | |
| TCGAAGAGGCTCCGATGAAT+TGG | - | chr2_1:78258549-78258568 | Msa0227360:CDS | 50.0% | |
| AAGAGGCTCCGATGAATTGG+CGG | - | chr2_1:78258552-78258571 | Msa0227360:CDS | 50.0% | |
| TTGTTCCGAATGATGCGTCG+GGG | - | chr2_1:78258590-78258609 | Msa0227360:CDS | 50.0% | |
| TTCTTCCCCGACGCATCATT+CGG | + | chr2_1:78258598-78258617 | None:intergenic | 50.0% | |
| CAGAACTTCATCGTCATCGG+AGG | + | chr2_1:78258774-78258793 | None:intergenic | 50.0% | |
| !!! | CTCCGGTTTTGAGCAAGATG+GGG | - | chr2_1:78258944-78258963 | Msa0227360:intron | 50.0% |
| !! | TGTCGGTGCTACAGAGAAGT+TGG | + | chr2_1:78260520-78260539 | None:intergenic | 50.0% |
| TCTTGCATCCTTCTCTCCCA+TGG | + | chr2_1:78260820-78260839 | None:intergenic | 50.0% | |
| !! | AGCTTTGGGGAGGAGCAATA+TGG | + | chr2_1:78260878-78260897 | None:intergenic | 50.0% |
| !! | CTCTATCTGAAGCTTTGGGG+AGG | + | chr2_1:78260888-78260907 | None:intergenic | 50.0% |
| CCCTAGCAAGAGCAAATGCA+TGG | - | chr2_1:78260938-78260957 | Msa0227360:intron | 50.0% | |
| GCTTCTGCTACTGTGAATGC+AGG | - | chr2_1:78261261-78261280 | Msa0227360:intron | 50.0% | |
| CGCCATTAGTCGTACTGAAG+AGG | - | chr2_1:78261452-78261471 | Msa0227360:intron | 50.0% | |
| !! | CAAGGATAGCTTCTGGCTCA+AGG | + | chr2_1:78261831-78261850 | None:intergenic | 50.0% |
| GTCTGTGCAAGGATAGCTTC+TGG | + | chr2_1:78261838-78261857 | None:intergenic | 50.0% | |
| AACTCTGGTGTGTCTGTGCA+AGG | + | chr2_1:78261849-78261868 | None:intergenic | 50.0% | |
| ATCGGTCCCAAAGGAAGACA+TGG | + | chr2_1:78261883-78261902 | None:intergenic | 50.0% | |
| TAACCAACGATCGGTCCCAA+AGG | + | chr2_1:78261892-78261911 | None:intergenic | 50.0% | |
| CAGAAGCTTCTGGTGGCAAT+GGG | + | chr2_1:78262021-78262040 | None:intergenic | 50.0% | |
| TCAGAAGCTTCTGGTGGCAA+TGG | + | chr2_1:78262022-78262041 | None:intergenic | 50.0% | |
| GTTGGATCAGAAGCTTCTGG+TGG | + | chr2_1:78262028-78262047 | None:intergenic | 50.0% | |
| TCGGTTGGATCAGAAGCTTC+TGG | + | chr2_1:78262031-78262050 | None:intergenic | 50.0% | |
| TCCAACCGATATCACTAGCG+AGG | - | chr2_1:78262042-78262061 | Msa0227360:CDS | 50.0% | |
| ACCTCGCTAGTGATATCGGT+TGG | + | chr2_1:78262046-78262065 | None:intergenic | 50.0% | |
| CTAGCGAGGTTTCACAATCG+AGG | - | chr2_1:78262056-78262075 | Msa0227360:CDS | 50.0% | |
| AGGCTTGAGAGAGATACAGC+TGG | - | chr2_1:78262076-78262095 | Msa0227360:CDS | 50.0% | |
| CGCCCCATCTTGCTCAAAAC+CGG | + | chr2_1:78258949-78258968 | None:intergenic | 55.0% | |
| !!! | CGGTTTTGAGCAAGATGGGG+CGG | - | chr2_1:78258947-78258966 | Msa0227360:CDS | 55.0% |
| CTTAGCCCTGAACGTGTAGC+AGG | + | chr2_1:78261686-78261705 | None:intergenic | 55.0% | |
| GGTCCCAAAGGAAGACATGG+AGG | + | chr2_1:78261880-78261899 | None:intergenic | 55.0% | |
| !! | CTTCCTTTGGGACCGATCGT+TGG | - | chr2_1:78261886-78261905 | Msa0227360:CDS | 55.0% |
| GGCAATGGCTGCAGCACAGA+AGG | + | chr2_1:78261953-78261972 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 78257962 | 78262458 | 78257962 | ID=Msa0227360;Name=Msa0227360 |
| chr2_1 | mRNA | 78257962 | 78262458 | 78257962 | ID=Msa0227360-mRNA-1;Parent=Msa0227360;Name=Msa0227360-mRNA-1;_AED=0.02;_eAED=0.02;_QI=315|0.66|0.5|1|0.66|0.75|4|308|480 |
| chr2_1 | exon | 78257962 | 78258779 | 78257962 | ID=Msa0227360-mRNA-1:exon:23868;Parent=Msa0227360-mRNA-1 |
| chr2_1 | exon | 78258947 | 78259137 | 78258947 | ID=Msa0227360-mRNA-1:exon:23867;Parent=Msa0227360-mRNA-1 |
| chr2_1 | exon | 78259357 | 78259671 | 78259357 | ID=Msa0227360-mRNA-1:exon:23866;Parent=Msa0227360-mRNA-1 |
| chr2_1 | exon | 78261717 | 78262458 | 78261717 | ID=Msa0227360-mRNA-1:exon:23865;Parent=Msa0227360-mRNA-1 |
| chr2_1 | five_prime_UTR | 78262144 | 78262458 | 78262144 | ID=Msa0227360-mRNA-1:five_prime_utr;Parent=Msa0227360-mRNA-1 |
| chr2_1 | CDS | 78261717 | 78262143 | 78261717 | ID=Msa0227360-mRNA-1:cds;Parent=Msa0227360-mRNA-1 |
| chr2_1 | CDS | 78259357 | 78259671 | 78259357 | ID=Msa0227360-mRNA-1:cds;Parent=Msa0227360-mRNA-1 |
| chr2_1 | CDS | 78258947 | 78259137 | 78258947 | ID=Msa0227360-mRNA-1:cds;Parent=Msa0227360-mRNA-1 |
| chr2_1 | CDS | 78258270 | 78258779 | 78258270 | ID=Msa0227360-mRNA-1:cds;Parent=Msa0227360-mRNA-1 |
| chr2_1 | three_prime_UTR | 78257962 | 78258269 | 78257962 | ID=Msa0227360-mRNA-1:three_prime_utr;Parent=Msa0227360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
