AlfalfaGEDB | Msa1010840

M. sativa cultivar zhongmu-4 / Msa1010840

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0008150 GO:0010817 GO:0016020 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0051049 GO:0065007 GO:0065008 GO:0071944 GO:2000012
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1010840	XP_003621746.2	89.920	377	12	2	1	351	1	377	0.0	682

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1010840	sp\|Q5XV40\|LAZY1_ARATH	31.472	394	185	15	1	351	1	352	1.33e-33	131

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1010840	G7KUR7	89.920	377	12	2	1	351	1	377	0.0	682

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0050990	Msa1010840	0.802785	4.757163e-49	-8.615850e-47
Msa0197100	Msa1010840	0.834972	2.200391e-56	-8.615850e-47
Msa0212150	Msa1010840	0.874699	5.507538e-68	-8.615850e-47
Msa0213040	Msa1010840	0.803934	2.750235e-49	-8.615850e-47
Msa0221290	Msa1010840	0.804805	1.811269e-49	-8.615850e-47
Msa0239030	Msa1010840	0.854547	1.144711e-61	-8.615850e-47
Msa0252770	Msa1010840	0.845887	3.067171e-59	-8.615850e-47
Msa0276740	Msa1010840	0.842774	2.105751e-58	-8.615850e-47
Msa0289920	Msa1010840	0.867334	1.477561e-65	-8.615850e-47
Msa0292170	Msa1010840	0.809830	1.558759e-50	-8.615850e-47

Showing 1 to 10 of 40 entries

Previous1 2 3 4Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1010840	MtrunA17_Chr7g0222391	89.920	377	12	2	1	351	1	377	0.0	682
Msa1010840	MtrunA17_Chr3g0122881	40.633	411	138	16	1	351	1	365	6.02e-69	221
Msa1010840	MtrunA17_Chr7g0224731	32.275	378	187	17	1	351	1	336	4.18e-41	147
Msa1010840	MtrunA17_Chr7g0224671	26.108	406	188	17	1	353	18	364	1.48e-17	83.6

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1010840	AT5G14090.1	31.472	394	185	15	1	351	1	352	1.35e-34	131
Msa1010840	AT5G14090.2	33.594	256	110	8	1	227	1	225	3.01e-29	115

Showing 1 to 2 of 2 entries

Previous1Next

Find 79 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGCATAGGACTTCACT+AGG	0.619151	7_1:-14174470	Msa1010840:CDS
AACTTCAGAAAATCATTTGC+TGG	0.355575	7_1:-14174974	Msa1010840:CDS
AAGAAGATTCATCTTCTTGC+AGG	0.336701	7_1:-14172549	Msa1010840:CDS
AATACATGGCTACATCTACA+TGG	0.551307	7_1:+14171237	None:intergenic
AATCTTCTTCTGGATGCACA+AGG	0.662162	7_1:+14172563	None:intergenic
AATGATATTTGGAAAACTTT+TGG	0.252376	7_1:-14170955	Msa1010840:three_prime_UTR
AATGATGGAGGTCCCAACAA+AGG	0.636070	7_1:-14172589	Msa1010840:CDS
AATGCTGTTTGTCCTTTACA+AGG	0.501835	7_1:-14174551	Msa1010840:CDS
AATTTGATAAAAGAAATGAA+AGG	0.633612	7_1:-14174385	Msa1010840:CDS
ACATACTATGAGGCAGACAT+TGG	0.560655	7_1:+14171355	None:intergenic

Showing 1 to 10 of 79 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TACAGAACCATTCAAAGATT+TGG	-	chr7_1:14171132-14171151	Msa1010840:three_prime_UTR	30.0%
GTTAGGTAAATTGTCTTCTT+GGG	+	chr7_1:14171630-14171649	None:intergenic	30.0%
TGTTAGGTAAATTGTCTTCT+TGG	+	chr7_1:14171631-14171650	None:intergenic	30.0%
TATTTGAGGACCTTTAAACA+TGG	+	chr7_1:14172015-14172034	None:intergenic	30.0%
AATTCTTGCAATTGTCTATC+AGG	-	chr7_1:14172162-14172181	Msa1010840:intron	30.0%
ATTCTTGCAATTGTCTATCA+GGG	-	chr7_1:14172163-14172182	Msa1010840:intron	30.0%
TTGAATCTGATTCCAAGATT+TGG	+	chr7_1:14172228-14172247	None:intergenic	30.0%
AACTTCAGAAAATCATTTGC+TGG	-	chr7_1:14172273-14172292	Msa1010840:intron	30.0%
GAAGAACATGAAGAAGAATA+TGG	-	chr7_1:14172312-14172331	Msa1010840:intron	30.0%
TGAACTGAGATTTGAAAAGA+TGG	+	chr7_1:14172441-14172460	None:intergenic	30.0%

Showing 1 to 10 of 261 entries

Previous1 2 3 4 5…27Next

Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	14170951	14176318	14170951	ID=Msa1010840;Name=Msa1010840
chr7_1	mRNA	14170951	14176318	14170951	ID=Msa1010840-mRNA-1;Parent=Msa1010840;Name=Msa1010840-mRNA-1;_AED=0.03;_eAED=0.03;_QI=34\|0.5\|0.4\|1\|0.75\|0.8\|5\|523\|377
chr7_1	exon	14170951	14171549	14170951	ID=Msa1010840-mRNA-1:exon:3664;Parent=Msa1010840-mRNA-1
chr7_1	exon	14172517	14172710	14172517	ID=Msa1010840-mRNA-1:exon:3663;Parent=Msa1010840-mRNA-1
chr7_1	exon	14174247	14175064	14174247	ID=Msa1010840-mRNA-1:exon:3662;Parent=Msa1010840-mRNA-1
chr7_1	exon	14176139	14176178	14176139	ID=Msa1010840-mRNA-1:exon:3661;Parent=Msa1010840-mRNA-1
chr7_1	exon	14176279	14176318	14176279	ID=Msa1010840-mRNA-1:exon:3660;Parent=Msa1010840-mRNA-1
chr7_1	five_prime_UTR	14176285	14176318	14176285	ID=Msa1010840-mRNA-1:five_prime_utr;Parent=Msa1010840-mRNA-1
chr7_1	CDS	14176279	14176284	14176279	ID=Msa1010840-mRNA-1:cds;Parent=Msa1010840-mRNA-1
chr7_1	CDS	14176139	14176178	14176139	ID=Msa1010840-mRNA-1:cds;Parent=Msa1010840-mRNA-1
chr7_1	CDS	14174247	14175064	14174247	ID=Msa1010840-mRNA-1:cds;Parent=Msa1010840-mRNA-1
chr7_1	CDS	14172517	14172710	14172517	ID=Msa1010840-mRNA-1:cds;Parent=Msa1010840-mRNA-1
chr7_1	CDS	14171474	14171549	14171474	ID=Msa1010840-mRNA-1:cds;Parent=Msa1010840-mRNA-1
chr7_1	three_prime_UTR	14170951	14171473	14170951	ID=Msa1010840-mRNA-1:three_prime_utr;Parent=Msa1010840-mRNA-1

Gene Sequence

>Msa1010840

ATGACGTTACTTGGCTGGATGCATAGGAAATTTCGTCAGAATAGTAAACAAAACTATCATCAAAAACCAAATCTTGGAATCAGATTCAACAAACAAACACAAAAACCTCAAAACAACTTCAGAAAATCATTTGCTGGTCTAGAATCAACAAGAGAAGAACATGAAGAAGAATATGGAAGACAATCACAAGATGATGATGCTATGTTTGATCTCTTCCCTGGTTTCCTTGCAATTGGAACACTTGGATCAGACCAACCAATTTCATCGAATCCATCGACACCATCTTTTCAAATCTCAGTTCAAACCATAACCGAAAATGAAAACGAAGACGAAGTAACTGAAAATGATCTCAAACTCATCAATGATGAGTTAGAGAAAGTTCTTGGTGCTGAAACAAAAGATGATGTACTAAGCTATGATTCTTCAAGCAGAAACAGCCATGTCAGCACTGGAAGAAGTAGCCATGTCAGCACTGGAAGAAATAGCCATGTCAGCATAGTAACAATAAGTGGAAAACCAATTGAAGGAACAGACACAAATGCTGTTTGTCCTTTACAAGGTTATTTGTTTGGAACAGCTGTTGAAATGTCTGAAACAGCAGTTACTAGTGTTGGTAAGAAAGAGCATAGGACTTCACTAGGTGAACTTTTTCAGAGAAGTAAATTGGCTGATGAGATTTCTTTTGGAATGAAATTTGAGAAAGAATTTGATAAAAGAAATGAAAGGGATTCTGAGAAATATTCTGCTTTGAATATGGTGAAAGAAAAGCTGAAAAAAAGAATGTTTCATTCATGTTCTAAAAATTCTTCATCTGCGAATGGTGCAAGTGTTGATTCTGCTTCAGCTGAGAGTAAACTCAATAAGATTCTCCATATGTTCCGGAAAAAAGTTCATCCAGAAAGTTCAACAGTTGGACACAAATCTGGCAAACATCGAAAGAATGAGAACAAGAAGAAAAACATGAATGATGGAGGTCCCAACAAAGGCTACCTTGTGCATCCAGAAGAAGATTCATCTTCTTGCAGGGAGCATTGGATCAAAACAGATGCAGATTGTAAATTTAGTTCTAGAGCTTTGAATGGCAAAGAAGAAATTGGGTTGTTTAAGTTGTTATCCTCTATTAGTAATGTGTAA

Protein sequence

>Msa1010840

MTLLGWMHRKFRQNSKQNYHQKPNLGIRFNKQTQKPQNNFRKSFAGLESTREEHEEEYGRQSQDDDAMFDLFPGFLAIGTLGSDQPISSNPSTPSFQISVQTITENENEDEVTENDLKLINDELEKVLGAETKDDVLSYDSSSRNSHVSTGRSSHVSTGRNSHVSIVTISGKPIEGTDTNAVCPLQGYLFGTAVEMSETAVTSVGKKEHRTSLGELFQRSKLADEISFGMKFEKEFDKRNERDSEKYSALNMVKEKLKKRMFHSCSKNSSSANGASVDSASAESKLNKILHMFRKKVHPESSTVGHKSGKHRKNENKKKNMNDGGPNKGYLVHPEEDSSSCREHWIKTDADCKFSSRALNGKEEIGLFKLLSSISNV*