AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1129970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1129970 MtrunA17_Chr7g0275001 98.895 362 4 0 1 362 1 362 0.0 737
Msa1129970 MtrunA17_Chr1g0189931 74.044 366 87 3 1 359 1 365 0.0 569
Msa1129970 MtrunA17_Chr1g0189901 72.951 366 92 5 1 360 1 365 0.0 547
Msa1129970 MtrunA17_Chr7g0275011 72.269 357 96 2 7 361 14 369 0.0 546
Msa1129970 MtrunA17_Chr7g0274991 70.166 362 102 2 1 362 14 369 0.0 529
Msa1129970 MtrunA17_Chr6g0457921 72.303 343 93 2 21 362 25 366 0.0 524
Msa1129970 MtrunA17_Chr7g0275021 71.802 344 96 1 19 362 28 370 0.0 521
Msa1129970 MtrunA17_Chr4g0008851 69.359 359 106 3 7 362 13 370 0.0 520
Msa1129970 MtrunA17_Chr1g0182811 63.435 361 127 4 4 360 10 369 1.56e-171 482
Msa1129970 MtrunA17_Chr7g0215961 64.345 359 111 3 4 362 15 356 8.32e-169 474
Msa1129970 MtrunA17_Chr1g0189891 64.499 369 113 7 1 361 1 359 2.29e-166 469
Msa1129970 MtrunA17_Chr8g0374101 39.645 338 196 6 25 355 37 373 1.68e-77 243
Msa1129970 MtrunA17_Chr4g0068441 38.746 351 211 3 4 352 14 362 8.13e-77 241
Msa1129970 MtrunA17_Chr5g0434621 39.169 337 199 5 5 340 6 337 1.49e-76 239
Msa1129970 MtrunA17_Chr3g0131321 37.396 361 217 3 1 352 3 363 4.61e-75 237
Msa1129970 MtrunA17_Chr5g0438621 36.550 342 208 5 5 340 6 344 3.35e-74 233
Msa1129970 MtrunA17_Chr2g0294301 37.143 350 216 3 9 356 19 366 8.64e-74 233
Msa1129970 MtrunA17_Chr3g0077571 36.390 349 214 6 9 355 12 354 3.20e-73 231
Msa1129970 MtrunA17_Chr4g0017431 35.650 331 212 1 25 355 31 360 1.47e-70 224
Msa1129970 MtrunA17_Chr5g0444401 35.635 362 217 6 5 357 7 361 2.75e-70 224
Msa1129970 MtrunA17_Chr2g0294311 37.791 344 198 5 25 356 32 371 2.81e-70 224
Msa1129970 MtrunA17_Chr2g0285061 35.457 361 226 7 1 358 9 365 2.41e-69 221
Msa1129970 MtrunA17_Chr5g0438631 38.750 320 188 6 25 340 28 343 1.38e-68 219
Msa1129970 MtrunA17_Chr3g0092131 35.860 343 213 5 1 341 1 338 4.30e-68 218
Msa1129970 MtrunA17_Chr3g0120861 35.045 331 209 5 21 348 34 361 4.80e-68 218
Msa1129970 MtrunA17_Chr3g0105401 36.677 319 198 4 25 341 28 344 6.13e-68 217
Msa1129970 MtrunA17_Chr8g0380041 35.475 358 223 6 4 358 11 363 1.16e-67 217
Msa1129970 MtrunA17_Chr4g0060811 38.170 317 191 4 27 341 29 342 6.24e-67 215
Msa1129970 MtrunA17_Chr3g0086641 36.164 365 215 9 6 358 12 370 9.39e-67 215
Msa1129970 MtrunA17_Chr3g0099161 34.501 371 219 8 1 358 67 426 4.27e-66 215
Msa1129970 MtrunA17_Chr5g0396511 35.347 331 212 2 27 356 48 377 1.56e-65 212
Msa1129970 MtrunA17_Chr8g0371491 37.107 318 195 4 25 340 36 350 2.72e-65 211
Msa1129970 MtrunA17_Chr5g0438641 34.627 335 212 6 10 341 17 347 4.07e-64 207
Msa1129970 MtrunA17_Chr1g0156921 36.391 327 196 5 25 347 42 360 2.70e-63 206
Msa1129970 MtrunA17_Chr1g0189911 62.585 147 53 2 214 359 2 147 3.39e-63 198
Msa1129970 MtrunA17_Chr3g0085881 36.443 343 199 9 18 356 24 351 6.37e-63 204
Msa1129970 MtrunA17_Chr2g0330781 35.938 320 197 5 25 340 31 346 4.45e-62 202
Msa1129970 MtrunA17_Chr3g0099151 34.066 364 222 6 5 358 67 422 6.41e-62 204
Msa1129970 MtrunA17_Chr5g0405831 35.737 319 199 5 25 340 43 358 6.31e-61 199
Msa1129970 MtrunA17_Chr8g0341001 34.796 319 202 5 25 340 32 347 8.84e-61 199
Msa1129970 MtrunA17_Chr1g0156891 37.618 319 194 4 25 341 43 358 6.10e-60 197
Msa1129970 MtrunA17_Chr1g0156901 37.538 325 196 4 25 348 50 368 7.22e-60 197
Msa1129970 MtrunA17_Chr5g0432101 34.603 315 199 5 25 335 33 344 2.14e-59 196
Msa1129970 MtrunA17_Chr3g0099231 32.164 342 216 5 25 358 28 361 2.49e-59 196
Msa1129970 MtrunA17_Chr1g0156931 33.429 350 220 6 1 341 9 354 2.93e-59 195
Msa1129970 MtrunA17_Chr2g0320671 33.430 344 222 5 1 340 4 344 2.66e-58 192
Msa1129970 MtrunA17_Chr1g0156911 36.000 325 201 4 25 348 37 355 2.96e-58 192
Msa1129970 MtrunA17_Chr3g0077581 34.911 338 213 7 22 355 33 367 2.87e-57 190
Msa1129970 MtrunA17_Chr8g0380031 31.476 359 231 6 3 358 60 406 2.61e-56 189
Msa1129970 MtrunA17_Chr8g0371481 34.062 320 203 7 25 340 41 356 3.75e-56 187
Msa1129970 MtrunA17_Chr2g0301641 34.104 346 213 6 24 361 42 380 1.59e-55 186
Msa1129970 MtrunA17_Chr5g0405821 32.951 349 218 7 5 340 14 359 8.19e-55 184
Msa1129970 MtrunA17_Chr8g0371471 32.812 320 208 6 25 341 41 356 1.73e-54 183
Msa1129970 MtrunA17_Chr3g0142941 32.602 319 207 4 25 340 47 360 5.52e-54 182
Msa1129970 MtrunA17_Chr3g0142921 34.688 320 202 6 25 341 36 351 4.72e-53 179
Msa1129970 MtrunA17_Chr5g0437421 31.832 333 215 5 19 343 26 354 1.01e-51 176
Msa1129970 MtrunA17_Chr4g0027521 32.326 331 208 7 20 340 20 344 1.06e-51 175
Msa1129970 MtrunA17_Chr1g0189921 68.800 125 33 2 1 119 1 125 3.19e-51 167
Msa1129970 MtrunA17_Chr2g0284951 32.551 341 209 9 21 356 29 353 3.52e-51 174
Msa1129970 MtrunA17_Chr1g0157001 33.628 339 205 7 30 355 41 372 7.33e-51 174
Msa1129970 MtrunA17_Chr5g0420811 35.220 318 186 9 21 334 29 330 3.41e-50 171
Msa1129970 MtrunA17_Chr4g0046151 31.714 350 217 9 10 342 22 366 4.08e-50 171
Msa1129970 MtrunA17_Chr2g0285001 32.258 341 216 9 21 356 29 359 1.59e-49 170
Msa1129970 MtrunA17_Chr8g0370951 31.609 348 210 9 25 356 31 366 3.74e-49 169
Msa1129970 MtrunA17_Chr8g0349341 31.897 348 214 8 18 356 30 363 3.78e-49 169
Msa1129970 MtrunA17_Chr2g0284991 30.499 341 219 8 21 355 29 357 5.60e-49 169
Msa1129970 MtrunA17_Chr2g0284921 30.145 345 223 8 20 358 29 361 1.09e-48 167
Msa1129970 MtrunA17_Chr2g0283191 30.973 339 218 7 5 331 18 352 1.96e-48 167
Msa1129970 MtrunA17_Chr8g0349321 31.700 347 216 8 18 356 30 363 5.22e-48 166
Msa1129970 MtrunA17_Chr7g0228261 70.526 95 28 0 267 361 1 95 9.57e-48 157
Msa1129970 MtrunA17_Chr8g0370981 28.871 381 213 7 27 357 46 418 9.90e-47 164
Msa1129970 MtrunA17_Chr8g0344941 31.212 330 207 8 20 339 36 355 3.84e-45 159
Msa1129970 MtrunA17_Chr8g0344931 29.640 361 232 10 5 358 16 361 6.03e-45 158
Msa1129970 MtrunA17_Chr2g0284941 31.287 342 196 8 21 356 29 337 1.04e-44 157
Msa1129970 MtrunA17_Chr3g0085231 27.988 343 211 10 25 356 31 348 7.95e-42 149
Msa1129970 MtrunA17_Chr8g0349301 31.507 292 183 7 18 306 30 307 7.55e-38 138
Msa1129970 MtrunA17_Chr8g0349331 29.282 362 203 10 5 356 13 331 3.42e-37 136
Msa1129970 MtrunA17_Chr1g0160031 30.081 369 216 12 1 342 15 368 4.69e-36 135
Msa1129970 MtrunA17_Chr8g0370961 28.033 239 159 4 121 355 13 242 4.28e-34 126
Msa1129970 MtrunA17_Chr7g0271551 30.347 346 210 12 17 349 29 356 7.18e-33 125
Msa1129970 MtrunA17_Chr8g0381581 27.027 370 227 11 3 342 18 374 1.57e-29 117
Msa1129970 MtrunA17_Chr1g0160011 29.971 347 199 12 25 343 40 370 3.10e-29 116
Msa1129970 MtrunA17_Chr6g0459921 27.311 238 168 4 123 358 127 361 3.80e-29 115
Msa1129970 MtrunA17_Chr1g0159971 29.380 371 212 14 5 343 27 379 4.93e-29 115
Msa1129970 MtrunA17_Chr6g0455661 26.891 238 169 4 123 358 238 472 2.46e-28 115
Msa1129970 MtrunA17_Chr6g0455661 46.667 105 49 3 25 129 31 128 4.37e-19 88.2
Msa1129970 MtrunA17_Chr6g0450731 28.530 347 215 11 11 343 22 349 1.47e-27 111
Msa1129970 MtrunA17_Chr4g0027571 27.928 222 157 2 128 348 3 222 1.95e-27 107
Msa1129970 MtrunA17_Chr2g0283511 29.552 335 205 13 30 342 36 361 2.72e-27 110
Msa1129970 MtrunA17_Chr7g0254461 26.596 376 224 13 5 343 19 379 3.08e-27 110
Msa1129970 MtrunA17_Chr8g0352901 30.833 360 208 12 10 343 16 360 3.79e-27 110
Msa1129970 MtrunA17_Chr1g0159991 28.158 380 213 13 1 343 12 368 1.76e-26 108
Msa1129970 MtrunA17_Chr2g0283481 28.763 372 234 13 5 355 27 388 3.62e-26 108
Msa1129970 MtrunA17_Chr6g0450701 30.612 343 199 12 25 343 39 366 5.80e-26 107
Msa1129970 MtrunA17_Chr6g0450721 28.242 347 214 13 11 343 22 347 1.21e-25 105
Msa1129970 MtrunA17_Chr7g0229591 39.735 151 89 2 25 174 30 179 2.64e-25 101
Msa1129970 MtrunA17_Chr8g0347751 26.776 366 223 13 10 343 18 370 2.76e-25 105
Msa1129970 MtrunA17_Chr6g0450711 28.895 353 203 14 18 343 118 449 4.59e-25 105
Msa1129970 MtrunA17_Chr1g0159981 26.344 372 230 12 1 343 22 378 4.84e-25 104
Msa1129970 MtrunA17_Chr3g0104821 28.909 339 213 12 24 342 43 373 6.75e-25 104
Msa1129970 MtrunA17_Chr7g0275291 26.685 371 230 13 1 343 7 363 7.27e-25 104
Msa1129970 MtrunA17_Chr2g0283501 28.235 340 212 12 25 342 31 360 7.31e-25 103
Msa1129970 MtrunA17_Chr1g0178941 26.126 333 211 12 24 341 39 351 1.20e-24 103
Msa1129970 MtrunA17_Chr1g0178931 25.455 330 209 14 24 341 36 340 2.54e-23 99.4
Msa1129970 MtrunA17_Chr1g0198381 26.984 315 195 12 26 329 3 293 4.07e-23 98.2
Msa1129970 MtrunA17_Chr1g0198351 26.730 318 191 15 26 329 44 333 7.98e-23 98.2
Msa1129970 MtrunA17_Chr1g0191461 27.671 365 218 14 6 340 12 360 1.05e-22 97.8
Msa1129970 MtrunA17_Chr2g0301581 28.739 341 192 14 25 342 34 346 1.34e-22 97.4
Msa1129970 MtrunA17_Chr7g0266061 25.309 324 210 10 26 339 43 344 1.63e-22 97.1
Msa1129970 MtrunA17_Chr3g0112821 28.402 338 216 13 24 346 29 355 9.62e-22 95.1
Msa1129970 MtrunA17_Chr7g0273101 27.299 348 208 11 25 342 29 361 1.08e-21 95.1
Msa1129970 MtrunA17_Chr7g0226911 24.438 356 216 12 24 343 34 372 1.45e-21 94.7
Msa1129970 MtrunA17_Chr3g0093031 28.571 343 214 14 24 346 29 360 2.55e-21 94.0
Msa1129970 MtrunA17_Chr2g0301541 28.152 341 194 14 25 342 34 346 7.06e-21 92.4
Msa1129970 MtrunA17_Chr0c01g0489581 26.453 344 200 13 24 342 29 344 1.13e-19 89.0
Msa1129970 MtrunA17_Chr2g0317271 26.023 342 204 12 24 342 29 344 1.49e-19 88.6
Msa1129970 MtrunA17_Chr5g0440501 26.047 215 152 3 127 335 13 226 1.58e-19 87.0
Msa1129970 MtrunA17_Chr7g0226931 24.933 373 213 13 21 343 31 386 1.59e-19 89.0
Msa1129970 MtrunA17_Chr0c01g0489571 26.453 344 200 13 24 342 29 344 1.83e-19 88.6
Msa1129970 MtrunA17_Chr7g0229581 30.405 148 102 1 202 348 8 155 2.47e-19 84.0
Msa1129970 MtrunA17_Chr2g0317261 25.882 340 207 11 24 342 29 344 1.10e-18 86.3
Msa1129970 MtrunA17_Chr4g0057991 25.886 367 227 15 6 343 13 363 1.18e-18 86.3
Msa1129970 MtrunA17_Chr2g0283531 28.286 350 205 16 23 342 26 359 2.37e-18 85.5
Msa1129970 MtrunA17_Chr6g0469511 42.982 114 63 2 25 137 30 142 3.15e-18 80.5
Msa1129970 MtrunA17_Chr8g0370971 46.939 98 41 2 27 116 40 134 8.06e-18 80.1
Msa1129970 MtrunA17_Chr4g0027561 44.898 98 53 1 25 121 30 127 5.65e-17 77.0
Msa1129970 MtrunA17_Chr3g0112691 28.205 351 203 17 24 346 29 358 1.65e-16 80.1
Msa1129970 MtrunA17_Chr2g0321991 47.126 87 45 1 25 110 33 119 1.70e-14 69.7
Msa1129970 MtrunA17_Chr4g0018571 28.289 152 108 1 198 348 27 178 1.30e-13 68.6
Msa1129970 MtrunA17_Chr2g0301551 25.763 295 171 12 71 342 33 302 4.10e-13 69.3
Msa1129970 MtrunA17_Chr2g0301591 27.798 277 157 10 25 285 34 283 2.62e-12 66.6
Msa1129970 MtrunA17_Chr6g0469521 31.092 119 82 0 192 310 22 140 1.25e-11 62.4
Msa1129970 MtrunA17_Chr2g0301571 25.424 295 172 12 71 342 33 302 1.60e-11 64.7
Msa1129970 MtrunA17_Chr3g0104831 26.217 267 170 11 96 342 33 292 2.53e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1129970 AT5G33370.1 71.901 363 100 2 1 362 5 366 0.0 545
Msa1129970 AT3G04290.1 75.221 339 83 1 22 360 26 363 0.0 538
Msa1129970 AT5G18430.1 66.298 362 118 2 1 358 1 362 6.59e-175 491
Msa1129970 AT4G28780.1 63.866 357 128 1 5 361 11 366 1.36e-171 482
Msa1129970 AT5G33370.2 71.277 282 79 2 6 286 10 290 1.81e-145 415
Msa1129970 AT5G15720.1 39.645 338 185 4 25 352 30 358 2.39e-80 250
Msa1129970 AT2G23540.1 38.872 337 200 5 25 355 48 384 1.23e-77 244
Msa1129970 AT3G50400.1 40.774 336 190 8 25 352 34 368 1.12e-76 241
Msa1129970 AT1G71691.2 39.583 336 196 6 25 359 55 384 4.89e-73 232
Msa1129970 AT1G29670.1 37.989 358 213 7 5 358 11 363 2.24e-72 229
Msa1129970 AT1G71250.1 35.211 355 225 2 5 355 17 370 2.34e-72 230
Msa1129970 AT1G29660.1 36.592 358 220 5 5 358 10 364 6.34e-72 228
Msa1129970 AT1G29670.2 37.989 358 213 7 5 358 79 431 1.35e-71 229
Msa1129970 AT5G08460.1 37.126 334 207 1 25 355 49 382 4.30e-71 227
Msa1129970 AT5G37690.1 38.012 342 200 6 5 340 4 339 4.98e-70 223
Msa1129970 AT5G45670.1 36.212 359 221 6 5 358 7 362 5.97e-70 223
Msa1129970 AT2G42990.1 37.237 333 204 4 11 341 14 343 1.07e-69 222
Msa1129970 AT1G75890.2 37.224 317 193 5 25 338 47 360 1.74e-69 222
Msa1129970 AT1G75890.3 37.224 317 193 5 25 338 76 389 2.99e-69 223
Msa1129970 AT1G75890.1 36.170 329 193 6 25 338 47 373 6.58e-68 218
Msa1129970 AT4G18970.1 37.725 334 200 5 26 355 29 358 3.53e-67 216
Msa1129970 AT2G04570.1 34.604 341 218 4 5 343 8 345 4.63e-67 215
Msa1129970 AT1G75880.1 34.181 354 217 5 1 340 16 367 7.90e-67 216
Msa1129970 AT1G74460.1 36.418 335 208 4 9 341 7 338 2.09e-66 214
Msa1129970 AT4G18970.2 37.725 334 200 5 26 355 29 358 2.34e-66 215
Msa1129970 AT1G75880.2 34.181 354 216 6 1 340 16 366 6.14e-66 213
Msa1129970 AT4G26790.1 35.737 319 200 4 25 341 29 344 1.23e-65 212
Msa1129970 AT4G26790.2 35.737 319 200 4 25 341 29 344 1.23e-65 212
Msa1129970 AT1G33811.1 35.484 341 211 6 21 355 30 367 2.49e-64 209
Msa1129970 AT1G58430.1 35.143 350 212 7 1 337 1 348 2.59e-64 209
Msa1129970 AT5G37690.2 36.550 342 197 7 5 340 4 331 3.62e-64 208
Msa1129970 AT2G30310.1 35.244 349 212 8 1 337 1 347 1.40e-63 207
Msa1129970 AT5G41890.1 35.143 350 202 8 21 352 27 369 2.02e-63 207
Msa1129970 AT2G30220.1 35.043 351 211 8 1 339 3 348 5.48e-63 205
Msa1129970 AT5G42170.1 36.792 318 193 4 25 340 50 361 8.03e-63 205
Msa1129970 AT1G06990.1 34.395 314 200 4 25 335 37 347 2.37e-61 201
Msa1129970 AT5G03820.1 36.311 347 207 7 5 340 6 349 2.48e-61 201
Msa1129970 AT3G53100.1 36.207 348 209 7 1 340 1 343 4.09e-61 200
Msa1129970 AT3G16370.1 36.050 319 198 5 25 340 30 345 4.37e-61 200
Msa1129970 AT2G31540.1 34.615 364 214 10 1 345 1 359 4.40e-61 200
Msa1129970 AT2G24560.1 34.012 344 207 9 1 329 1 339 7.46e-61 200
Msa1129970 AT1G20120.1 34.891 321 200 5 25 341 78 393 9.71e-61 201
Msa1129970 AT5G03820.2 36.311 347 207 7 5 340 34 377 1.06e-60 200
Msa1129970 AT4G10950.2 33.934 333 218 2 25 356 71 402 1.08e-60 201
Msa1129970 AT5G03810.1 35.260 346 211 6 5 340 3 345 4.26e-60 197
Msa1129970 AT5G22810.1 37.003 327 196 6 21 340 28 351 9.09e-60 197
Msa1129970 AT4G10950.1 33.832 334 213 4 25 356 71 398 9.26e-59 195
Msa1129970 AT5G15720.3 35.540 287 168 3 76 352 48 327 1.88e-58 192
Msa1129970 AT5G55050.1 35.777 341 205 9 26 357 40 375 5.26e-58 192
Msa1129970 AT2G19060.1 35.632 348 194 11 1 342 13 336 1.05e-57 191
Msa1129970 AT5G15720.2 38.406 276 151 4 25 290 30 296 1.14e-56 187
Msa1129970 AT3G14820.1 32.722 327 207 6 25 347 32 349 4.07e-56 187
Msa1129970 AT1G20135.1 32.934 334 207 7 5 336 9 327 8.76e-56 186
Msa1129970 AT5G45950.1 33.968 315 199 7 25 338 40 346 9.91e-56 186
Msa1129970 AT1G59406.1 34.169 319 200 6 25 340 30 341 1.61e-55 186
Msa1129970 AT1G59030.1 34.169 319 200 6 25 340 30 341 1.61e-55 186
Msa1129970 AT1G58725.1 34.169 319 200 6 25 340 30 341 1.61e-55 186
Msa1129970 AT1G75900.1 33.542 319 204 5 25 340 43 356 3.66e-55 185
Msa1129970 AT1G71691.1 37.063 286 174 5 75 359 3 283 3.89e-55 182
Msa1129970 AT5G45960.1 34.603 315 193 7 25 331 47 356 2.42e-54 183
Msa1129970 AT2G19050.1 34.056 323 188 8 26 342 32 335 1.91e-53 180
Msa1129970 AT1G73610.1 35.826 321 184 8 25 341 35 337 5.64e-53 179
Msa1129970 AT1G58520.3 33.542 319 195 7 25 340 30 334 1.66e-51 175
Msa1129970 AT1G58525.1 33.542 319 195 7 25 340 30 334 1.66e-51 175
Msa1129970 AT5G40990.1 30.997 371 230 9 7 359 12 374 2.89e-51 175
Msa1129970 AT2G40250.1 32.733 333 209 5 25 350 36 360 4.15e-51 174
Msa1129970 AT1G20132.1 31.832 333 211 7 25 351 61 383 4.61e-51 175
Msa1129970 AT4G30140.1 34.328 335 203 8 22 356 30 347 1.29e-50 172
Msa1129970 AT1G71691.3 39.924 263 151 6 25 286 55 311 6.54e-50 170
Msa1129970 AT2G19010.1 31.700 347 215 10 1 342 5 334 8.56e-50 171
Msa1129970 AT2G19010.2 31.412 347 216 9 1 342 35 364 2.08e-49 170
Msa1129970 AT5G63170.1 31.737 334 207 8 1 331 6 321 3.83e-49 169
Msa1129970 AT2G24560.2 33.555 301 180 9 1 286 1 296 6.00e-49 167
Msa1129970 AT1G71120.1 33.134 335 204 9 25 352 31 352 1.09e-48 168
Msa1129970 AT1G20130.1 32.012 328 204 7 25 340 204 524 7.32e-48 170
Msa1129970 AT3G43570.1 30.259 347 200 7 1 340 1 312 8.28e-48 164
Msa1129970 AT1G20130.2 32.012 328 204 7 25 340 184 504 1.00e-47 169
Msa1129970 AT1G75910.1 32.710 321 200 6 25 341 28 336 1.72e-47 164
Msa1129970 AT4G16230.1 40.984 244 133 4 4 238 2 243 2.43e-47 161
Msa1129970 AT1G75930.1 34.545 330 191 9 25 344 29 343 1.20e-46 162
Msa1129970 AT1G53940.2 32.277 347 214 10 25 359 39 376 4.10e-46 162
Msa1129970 AT1G75920.2 31.562 320 204 6 25 341 29 336 9.97e-46 160
Msa1129970 AT2G19050.2 36.400 250 144 5 26 272 32 269 1.50e-44 155
Msa1129970 AT3G14225.2 29.769 346 222 7 25 358 37 373 9.79e-43 152
Msa1129970 AT3G14225.1 29.395 347 226 6 25 358 37 377 1.33e-42 152
Msa1129970 AT1G75920.1 30.149 335 204 7 25 341 24 346 2.88e-42 151
Msa1129970 AT1G53990.1 30.058 346 214 9 25 358 35 364 5.53e-42 150
Msa1129970 AT1G23500.1 30.435 345 221 6 1 342 11 339 1.94e-41 148
Msa1129970 AT3G43550.1 31.741 293 186 6 1 286 1 286 1.04e-40 145
Msa1129970 AT2G03980.2 32.595 316 194 9 25 332 43 347 2.15e-40 146
Msa1129970 AT2G03980.3 32.595 316 194 9 25 332 43 347 2.15e-40 146
Msa1129970 AT2G03980.1 32.595 316 194 9 25 332 43 347 2.15e-40 146
Msa1129970 AT2G03980.4 32.595 316 194 9 25 332 43 347 2.15e-40 146
Msa1129970 AT1G53920.1 29.538 325 214 7 25 342 48 364 1.97e-38 141
Msa1129970 AT1G75920.3 29.781 319 180 7 25 341 29 305 4.07e-37 136
Msa1129970 AT1G75920.4 30.272 294 190 6 51 341 27 308 4.43e-36 133
Msa1129970 AT2G31550.1 32.883 222 138 4 131 345 1 218 3.28e-34 126
Msa1129970 AT1G09390.1 32.081 346 196 12 23 349 35 360 4.45e-34 129
Msa1129970 AT1G53940.1 32.472 271 168 9 25 289 39 300 3.37e-30 117
Msa1129970 AT1G56670.1 30.636 346 204 13 21 349 37 363 2.74e-29 116
Msa1129970 AT5G14450.1 28.496 379 217 14 4 342 9 373 1.63e-28 114
Msa1129970 AT3G26430.1 29.474 380 217 15 1 343 1 366 1.72e-28 114
Msa1129970 AT3G62280.1 29.290 338 206 12 29 351 40 359 4.45e-28 113
Msa1129970 AT1G54030.1 26.331 338 221 11 24 358 51 363 2.75e-27 112
Msa1129970 AT5G03610.1 25.672 335 213 12 22 343 40 351 5.43e-26 107
Msa1129970 AT4G01130.1 26.882 372 228 13 5 346 14 371 1.50e-25 106
Msa1129970 AT2G04020.1 33.190 232 129 7 25 243 43 261 4.60e-25 102
Msa1129970 AT1G54020.2 26.048 334 222 9 27 356 35 347 5.26e-25 104
Msa1129970 AT3G09930.2 26.687 326 199 12 22 331 36 337 1.29e-24 103
Msa1129970 AT3G09930.1 26.687 326 199 12 22 331 36 337 1.29e-24 103
Msa1129970 AT3G27950.1 30.458 371 201 15 5 343 13 358 1.81e-24 103
Msa1129970 AT2G04020.2 34.450 209 118 5 25 226 43 239 2.72e-24 102
Msa1129970 AT4G16233.1 38.211 123 75 1 234 355 5 127 3.26e-24 97.1
Msa1129970 AT5G45910.1 28.142 366 227 14 5 342 7 364 1.16e-23 100
Msa1129970 AT3G14220.1 26.099 364 233 13 6 357 13 352 1.90e-22 97.4
Msa1129970 AT2G27360.1 27.419 372 220 17 5 342 8 363 3.71e-22 97.1
Msa1129970 AT1G54790.3 27.697 343 205 12 29 342 36 364 7.44e-22 95.9
Msa1129970 AT1G54000.1 24.348 345 233 10 25 360 36 361 1.28e-21 95.5
Msa1129970 AT1G67830.1 26.857 350 209 12 25 342 30 364 1.30e-21 95.1
Msa1129970 AT1G31550.2 27.697 343 201 15 29 342 40 364 2.09e-21 94.7
Msa1129970 AT1G28610.2 28.000 350 191 18 29 342 35 359 9.99e-21 92.8
Msa1129970 AT4G16220.1 51.327 113 51 3 6 116 10 120 1.20e-20 90.1
Msa1129970 AT1G54010.1 23.512 336 233 8 27 356 38 355 1.13e-19 89.7
Msa1129970 AT1G28570.1 27.114 343 214 16 24 342 33 363 1.42e-19 89.7
Msa1129970 AT1G28650.1 26.273 373 232 15 1 342 6 366 1.57e-19 89.4
Msa1129970 AT3G14210.1 26.361 349 213 14 25 356 36 357 3.34e-19 88.6
Msa1129970 AT1G28600.1 27.954 347 205 15 24 342 30 359 7.68e-19 87.4
Msa1129970 AT1G28580.1 28.779 344 207 16 24 342 36 366 1.39e-18 86.7
Msa1129970 AT4G01130.3 25.430 291 181 9 86 346 1 285 1.72e-18 85.1
Msa1129970 AT1G54790.1 26.667 345 210 12 27 342 33 363 2.14e-18 85.9
Msa1129970 AT1G31550.1 27.193 342 201 15 29 342 40 361 2.27e-18 85.9
Msa1129970 AT1G56670.2 28.763 299 176 10 9 286 15 297 2.50e-18 84.7
Msa1129970 AT1G28670.1 27.326 344 213 13 24 342 34 365 4.95e-18 85.1
Msa1129970 AT3G05180.1 25.287 348 215 11 25 342 36 368 7.24e-18 84.3
Msa1129970 AT1G28640.1 27.035 344 215 13 24 343 34 365 1.64e-17 83.6
Msa1129970 AT3G48460.1 26.344 372 229 17 1 343 9 364 2.96e-17 82.8
Msa1129970 AT4G01130.2 26.087 299 190 11 5 286 14 298 7.30e-17 80.9
Msa1129970 AT1G54030.2 27.386 241 149 9 24 261 51 268 2.28e-16 79.3
Msa1129970 AT2G36325.1 26.254 339 205 15 22 343 44 354 2.18e-15 77.0
Msa1129970 AT3G62280.2 27.612 268 168 8 29 286 40 291 3.44e-15 75.9
Msa1129970 AT1G54790.2 24.798 371 210 13 27 342 33 389 2.03e-13 71.2

Find 114 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAGAGACCTTAATGCATTT+TGG 0.160455 7_3:+82040804 Msa1129970:CDS
CATTGCAATGGCTACTTCTT+TGG 0.212631 7_3:+82038222 Msa1129970:exon
AAGATTAATGGATAAATTAA+AGG 0.248361 7_3:-82041030 None:intergenic
TATGCAGAGGCTTTATGATT+TGG 0.276116 7_3:+82040036 Msa1129970:intron
TGACGAGATCTTGCTGAAAA+AGG 0.277163 7_3:-82039141 None:intergenic
AAAACATTAACCAAATGTTT+TGG 0.292262 7_3:-82040970 None:intergenic
ATGAGATAACGAACATAATC+TGG 0.294327 7_3:-82039174 None:intergenic
AACTTTGCATCCGCTGGAAT+TGG 0.294980 7_3:+82038777 Msa1129970:CDS
ATTACCAACCCTCAAGCTTA+TGG 0.324844 7_3:+82040277 Msa1129970:CDS
GTTGGAGAGAAGCTTCTAAT+TGG 0.327488 7_3:+82038750 Msa1129970:CDS
ATGCAGAGGCTTTATGATTT+GGG 0.340229 7_3:+82040037 Msa1129970:intron
GCTTGTAGATTCTAATGATA+TGG 0.345770 7_3:-82038981 None:intergenic
GAGCACTGCCCCTAAGGATT+TGG 0.350165 7_3:-82040871 None:intergenic
TAATTACAGGTTTGGAGCTT+GGG 0.354330 7_3:+82038691 Msa1129970:intron
ATGCATCCCAAAATGCATTA+AGG 0.356356 7_3:-82040811 None:intergenic
TTCCATCCATCCAAAACATT+TGG 0.360632 7_3:+82040960 Msa1129970:three_prime_UTR
TATGGAATACAAAAGATTAA+TGG 0.362252 7_3:-82041042 None:intergenic
CCTACTGGGCGTTTCTCTAA+TGG 0.374174 7_3:+82038412 Msa1129970:CDS
CCGAGTACCGCAAAGTTCTC+AGG 0.377231 7_3:+82039199 Msa1129970:CDS
TCATAGTCAACCAAATCCTT+AGG 0.379086 7_3:+82040861 Msa1129970:CDS
ATGCATTAAGGTCTCTGTTT+GGG 0.379408 7_3:-82040799 None:intergenic
ACTAGTAGTGGGCTCAAGTA+TGG 0.379867 7_3:-82038729 None:intergenic
TCGACGCTACACTGACCATT+TGG 0.397889 7_3:-82040133 None:intergenic
AACAAGTTGAGGATTGTATA+AGG 0.398978 7_3:-82040173 None:intergenic
TAAACTCGATCTTACTGATT+AGG 0.399672 7_3:-82038450 None:intergenic
AGGGTTCTTGTAACGGGAAC+AGG 0.401037 7_3:+82040067 Msa1129970:CDS
TGATCAAGTCCTGGAATCTA+TGG 0.409147 7_3:-82040930 None:intergenic
AATGCATTAAGGTCTCTGTT+TGG 0.414420 7_3:-82040800 None:intergenic
TATCCAAGTCATAGACCTAC+TGG 0.422107 7_3:+82038397 Msa1129970:CDS
CATGCCAAGTTCTTAAGTAC+TGG 0.424088 7_3:+82041078 Msa1129970:three_prime_UTR
TTGATGAGTCGTGGTTTGTA+TGG 0.431349 7_3:-82038145 None:intergenic
CTATCATGGCCATAGATTCC+AGG 0.439615 7_3:+82040921 Msa1129970:CDS
CATAGTCAACCAAATCCTTA+GGG 0.439621 7_3:+82040862 Msa1129970:CDS
CACAAAAGAAATGTTGCACT+TGG 0.442954 7_3:-82041164 None:intergenic
TCGATCTTACTGATTAGGTC+AGG 0.448058 7_3:-82038445 None:intergenic
CTTGGATAATCAATGCCATA+TGG 0.455345 7_3:-82038382 None:intergenic
CGAGCTGACAATTATCCATA+TGG 0.459790 7_3:+82038367 Msa1129970:CDS
CAAGGGCCATACAATGGACT+TGG 0.462397 7_3:+82040749 Msa1129970:CDS
CATGATAGTGCTGAGATTCA+TGG 0.463618 7_3:-82040906 None:intergenic
ATAATTACAGGTTTGGAGCT+TGG 0.464789 7_3:+82038690 Msa1129970:intron
TCTGTTTGGGCACAAGTTTG+AGG 0.464929 7_3:-82040786 None:intergenic
CAAACCAGTACTTAAGAACT+TGG 0.469026 7_3:-82041082 None:intergenic
TACACTTACAAATTGGAATC+CGG 0.470329 7_3:-82038814 None:intergenic
AGATTAATGGATAAATTAAA+GGG 0.471617 7_3:-82041029 None:intergenic
CCTGAGAACTTTGCGGTACT+CGG 0.472091 7_3:-82039199 None:intergenic
TGTGTAATGATAAGCTTGGT+TGG 0.476386 7_3:+82038256 Msa1129970:CDS
GTAACGGGAACAGGACCAAT+GGG 0.482203 7_3:+82040076 Msa1129970:CDS
AATTCCAGCGGATGCAAAGT+TGG 0.482632 7_3:-82038775 None:intergenic
ATGATAGTGCTGAGATTCAT+GGG 0.483606 7_3:-82040905 None:intergenic
GCTCGTAGGGTTCTTGTAAC+GGG 0.485539 7_3:+82040061 Msa1129970:CDS
GGTGCCAACTTTGCATCCGC+TGG 0.492344 7_3:+82038771 Msa1129970:CDS
TTTGGGCACAAGTTTGAGGC+TGG 0.492795 7_3:-82040782 None:intergenic
TTGCACTTGGATTCAATCAA+AGG 0.496360 7_3:-82041151 None:intergenic
TGCATTCCATCCATCTGAAA+AGG 0.500058 7_3:+82040829 Msa1129970:CDS
TCTGCTGGTGCACACCCCAT+TGG 0.500748 7_3:-82040091 None:intergenic
ATTGGAATTCTCAATGATAC+CGG 0.501740 7_3:+82038795 Msa1129970:CDS
TTATGATTTGGGAGCTCGTA+GGG 0.504927 7_3:+82040048 Msa1129970:CDS
CATGAATCTCAGCACTATCA+TGG 0.506866 7_3:+82040907 Msa1129970:CDS
AGATCACTAAACCAAGAGAT+TGG 0.506960 7_3:+82040205 Msa1129970:CDS
CATATGGATAATTGTCAGCT+CGG 0.514994 7_3:-82038366 None:intergenic
TGTACTGAGCACTGCCCCTA+AGG 0.518112 7_3:-82040877 None:intergenic
CGCCCAGTAGGTCTATGACT+TGG 0.519853 7_3:-82038400 None:intergenic
GCATGACAAACCACTAGCTA+TGG 0.520172 7_3:-82041060 None:intergenic
TTGCCCACTCAAATTGTCGT+TGG 0.520615 7_3:+82041102 Msa1129970:three_prime_UTR
CAAAGCCCAAGTCCATTGTA+TGG 0.523043 7_3:-82040755 None:intergenic
CCTCTCATAGCTAATTCTGC+TGG 0.523864 7_3:-82040106 None:intergenic
AGATGTCAGAGCCAATCTCT+TGG 0.524884 7_3:-82040216 None:intergenic
AAGGTAGCATGCTGTGGACA+AGG 0.527586 7_3:+82040731 Msa1129970:CDS
AATATACCCTGAGAACTTTG+CGG 0.527998 7_3:-82039206 None:intergenic
GTACGAGTGCTCTGTTGACT+AGG 0.528446 7_3:-82039071 None:intergenic
AGCTCGTAGGGTTCTTGTAA+CGG 0.529952 7_3:+82040060 Msa1129970:CDS
AGCTTCTCTCCAACTAGTAG+TGG 0.531230 7_3:-82038741 None:intergenic
TACTTGAGCCCACTACTAGT+TGG 0.537722 7_3:+82038732 Msa1129970:CDS
GCTATGAGAGGAGGTCCAAA+TGG 0.539638 7_3:+82040118 Msa1129970:CDS
CAATGACTTTCTTGCTACCA+CGG 0.544419 7_3:+82038342 Msa1129970:CDS
GACAGGATTTGCAACATCAA+AGG 0.548688 7_3:+82040712 Msa1129970:intron
ATATGGATAATTGTCAGCTC+GGG 0.550623 7_3:-82038365 None:intergenic
CTCGTACTCATCACTCTTGG+TGG 0.556248 7_3:+82039087 Msa1129970:CDS
TTAGAATCTACAAGCAGCTA+AGG 0.560190 7_3:+82038989 Msa1129970:CDS
TGAGATAACGAACATAATCT+GGG 0.566580 7_3:-82039173 None:intergenic
CTGATCATGTCAACAAGTTG+AGG 0.566861 7_3:-82040184 None:intergenic
GGGCTCAAGTATGGAAGTGT+AGG 0.570268 7_3:-82038720 None:intergenic
AAGGAAGGATGATCAAGTCC+TGG 0.571193 7_3:-82040939 None:intergenic
TGCAATGCAAAACAATTGAG+AGG 0.574633 7_3:-82038206 None:intergenic
TGTAACGGGAACAGGACCAA+TGG 0.575654 7_3:+82040075 Msa1129970:CDS
GCACTCGTACTCATCACTCT+TGG 0.579889 7_3:+82039084 Msa1129970:CDS
TTTATGATTTGGGAGCTCGT+AGG 0.582685 7_3:+82040047 Msa1129970:CDS
CCATTAGAGAAACGCCCAGT+AGG 0.583236 7_3:-82038412 None:intergenic
CGAGTACCGCAAAGTTCTCA+GGG 0.585443 7_3:+82039200 Msa1129970:CDS
CGATCTTACTGATTAGGTCA+GGG 0.586893 7_3:-82038444 None:intergenic
TGTCTCAATTTGATGAGTCG+TGG 0.594908 7_3:-82038154 None:intergenic
AAGTGCACACATTGGTTCAG+AGG 0.601118 7_3:+82039038 Msa1129970:CDS
AGTACATACCATAAGCTTGA+GGG 0.609717 7_3:-82040285 None:intergenic
GCTTCTCTCCAACTAGTAGT+GGG 0.615075 7_3:-82038740 None:intergenic
ATAATTGTCAGCTCGGGCCG+TGG 0.619651 7_3:-82038359 None:intergenic
GGAGATTCTTTAGTGGACAG+TGG 0.621933 7_3:+82038316 Msa1129970:CDS
AAGACCAACGACAATTTGAG+TGG 0.622686 7_3:-82041106 None:intergenic
CCAGCAGAATTAGCTATGAG+AGG 0.625424 7_3:+82040106 Msa1129970:CDS
AGTGCACACATTGGTTCAGA+GGG 0.625538 7_3:+82039039 Msa1129970:CDS
ACATCAAAGGTAGCATGCTG+TGG 0.627775 7_3:+82040725 Msa1129970:CDS
GCAGAATTAGCTATGAGAGG+AGG 0.629341 7_3:+82040109 Msa1129970:CDS
AAGGGCCATACAATGGACTT+GGG 0.633513 7_3:+82040750 Msa1129970:CDS
AGGTAGCATGCTGTGGACAA+GGG 0.634327 7_3:+82040732 Msa1129970:CDS
CAGTACATACCATAAGCTTG+AGG 0.636538 7_3:-82040286 None:intergenic
ATTGAGAATTCCAATTCCAG+CGG 0.659069 7_3:-82038787 None:intergenic
AGACCAACGACAATTTGAGT+GGG 0.663041 7_3:-82041105 None:intergenic
ATCCAAGTCATAGACCTACT+GGG 0.664548 7_3:+82038398 Msa1129970:CDS
TGTGGACAAGGGCCATACAA+TGG 0.673219 7_3:+82040743 Msa1129970:CDS
AAAAGAGTAAGTGCACACAT+TGG 0.674961 7_3:+82039030 Msa1129970:CDS
CATACCATAAGCTTGAGGGT+TGG 0.678937 7_3:-82040281 None:intergenic
ATAGTCAACCAAATCCTTAG+GGG 0.684471 7_3:+82040863 Msa1129970:CDS
TGATGCATATAGAATGCACA+TGG 0.719610 7_3:+82040249 Msa1129970:CDS
TGATAGTGCTGAGATTCATG+GGG 0.720692 7_3:-82040904 None:intergenic
TAACGGGAACAGGACCAATG+GGG 0.735769 7_3:+82040077 Msa1129970:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTAAATATAGTGATAAT+TGG - chr7_3:82039252-82039271 None:intergenic 10.0%
!! AGGATATTTAATAATTAATA+TGG + chr7_3:82039327-82039346 Msa1129970:intron 10.0%
!! TACTAAACTATTAAATTAAT+GGG + chr7_3:82039563-82039582 Msa1129970:intron 10.0%
!! AAAATAAATAAATTTAGCAT+TGG + chr7_3:82040368-82040387 Msa1129970:intron 10.0%
!! TCTAATATTTGTATAATTAC+AGG + chr7_3:82038678-82038697 Msa1129970:intron 15.0%
!! TAAAAAAGTTTATGCTAAAT+TGG + chr7_3:82038905-82038924 Msa1129970:intron 15.0%
!! GTACTAAACTATTAAATTAA+TGG + chr7_3:82039562-82039581 Msa1129970:intron 15.0%
!! AATAATTTAGGAAAATTCTA+TGG - chr7_3:82039998-82040017 None:intergenic 15.0%
!!! ATAATTTTGAATAAGTCTAT+AGG - chr7_3:82040327-82040346 None:intergenic 15.0%
!!! AGATTAATGGATAAATTAAA+GGG - chr7_3:82041032-82041051 None:intergenic 15.0%
!!! AAGATTAATGGATAAATTAA+AGG - chr7_3:82041033-82041052 None:intergenic 15.0%
!! TATTTGTATAATTACAGGTT+TGG + chr7_3:82038683-82038702 Msa1129970:intron 20.0%
!! TTAATGTTACACTTACAAAT+TGG - chr7_3:82038824-82038843 None:intergenic 20.0%
!! TATTATAGTCACCATTAATT+TGG - chr7_3:82038887-82038906 None:intergenic 20.0%
!! ATATTAACATGTATGATGAT+TGG + chr7_3:82038944-82038963 Msa1129970:intron 20.0%
!!! TTTTGTCAACAACTATTATT+TGG + chr7_3:82039116-82039135 Msa1129970:CDS 20.0%
!! AAATATAGTGATAATTGGAT+TGG - chr7_3:82039247-82039266 None:intergenic 20.0%
!!! AAACTATAATCTCAAACTTT+TGG - chr7_3:82039306-82039325 None:intergenic 20.0%
!!! AAGTTTGAGATTATAGTTTA+AGG + chr7_3:82039307-82039326 Msa1129970:intron 20.0%
!! TTTAATAATTAATATGGACG+TGG + chr7_3:82039333-82039352 Msa1129970:intron 20.0%
!!! TTTAGTACTAGTTTAATTCA+TGG - chr7_3:82039550-82039569 None:intergenic 20.0%
!! GCAATATAGAGAAATAATTT+AGG - chr7_3:82040010-82040029 None:intergenic 20.0%
!! AATTTAACCAACTATTGAAT+TGG + chr7_3:82040685-82040704 Msa1129970:intron 20.0%
!! ATTTAACCAACTATTGAATT+GGG + chr7_3:82040686-82040705 Msa1129970:intron 20.0%
!!! AAAACATTAACCAAATGTTT+TGG - chr7_3:82040973-82040992 None:intergenic 20.0%
!! TATGGAATACAAAAGATTAA+TGG - chr7_3:82041045-82041064 None:intergenic 20.0%
!! TTTTTGTGTAATGATAAGCT+TGG + chr7_3:82038252-82038271 Msa1129970:CDS 25.0%
!!! TAGTGTTTTTTTAGTAGCAA+TGG - chr7_3:82038476-82038495 None:intergenic 25.0%
! TAGCAACAAAAAATAGTGAT+TGG - chr7_3:82038597-82038616 None:intergenic 25.0%
! CATTAATGTCACCAAATTAA+TGG + chr7_3:82038873-82038892 Msa1129970:intron 25.0%
! TTTCTGACTTTAATAAAGTC+TGG + chr7_3:82039511-82039530 Msa1129970:intron 25.0%
!! TACAGATACTATTTTATCGT+TGG + chr7_3:82039726-82039745 Msa1129970:intron 25.0%
!!! AATAAATTGATGATGCTATG+AGG + chr7_3:82039871-82039890 Msa1129970:intron 25.0%
!! AACTCATCTATGCATTTTTA+TGG - chr7_3:82040593-82040612 None:intergenic 25.0%
! CAATAGTTGGTTAAATTTGT+TGG - chr7_3:82040682-82040701 None:intergenic 25.0%
!! AAAGGAAGACATTTTATTAC+TGG - chr7_3:82041136-82041155 None:intergenic 25.0%
!! TCAATTGTTTTGCATTGCAA+TGG + chr7_3:82038210-82038229 Msa1129970:exon 30.0%
!!! TGTTTTTGGAGATTCTTTAG+TGG + chr7_3:82038309-82038328 Msa1129970:CDS 30.0%
! TAAACTCGATCTTACTGATT+AGG - chr7_3:82038453-82038472 None:intergenic 30.0%
CTAAAAAAACACTATCAGCT+AGG + chr7_3:82038482-82038501 Msa1129970:intron 30.0%
AATTCTCTCGTCACTAAATT+TGG - chr7_3:82038553-82038572 None:intergenic 30.0%
ATTGGAATTCTCAATGATAC+CGG + chr7_3:82038795-82038814 Msa1129970:CDS 30.0%
TACACTTACAAATTGGAATC+CGG - chr7_3:82038817-82038836 None:intergenic 30.0%
TAACATGTATGATGATTGGT+TGG + chr7_3:82038948-82038967 Msa1129970:intron 30.0%
GCTTGTAGATTCTAATGATA+TGG - chr7_3:82038984-82039003 None:intergenic 30.0%
TGAGATAACGAACATAATCT+GGG - chr7_3:82039176-82039195 None:intergenic 30.0%
ATGAGATAACGAACATAATC+TGG - chr7_3:82039177-82039196 None:intergenic 30.0%
! AATCTCAAACTTTTGGCAAT+TGG - chr7_3:82039299-82039318 None:intergenic 30.0%
TTAATAATGGCTGTTAGTAG+AGG + chr7_3:82039364-82039383 Msa1129970:intron 30.0%
TTTGTGCAAAATGTGTTAGT+TGG + chr7_3:82039397-82039416 Msa1129970:intron 30.0%
TAAATTAATGGGAGCTTCTA+CGG + chr7_3:82039574-82039593 Msa1129970:intron 30.0%
TCTTAAGTGTTACACTTTGT+GGG + chr7_3:82039791-82039810 Msa1129970:intron 30.0%
ATATTGCATAACATATGCAG+AGG + chr7_3:82040023-82040042 Msa1129970:intron 30.0%
! AACAAGTTGAGGATTGTATA+AGG - chr7_3:82040176-82040195 None:intergenic 30.0%
!!! ATTTTGTTAGCCTTTTCAGA+TGG - chr7_3:82040842-82040861 None:intergenic 30.0%
!! CATTAACCAAATGTTTTGGA+TGG - chr7_3:82040969-82040988 None:intergenic 30.0%
TGCAATGCAAAACAATTGAG+AGG - chr7_3:82038209-82038228 None:intergenic 35.0%
TGTGTAATGATAAGCTTGGT+TGG + chr7_3:82038256-82038275 Msa1129970:CDS 35.0%
CCAAAAACAAAGAAAGCTCT+TGG - chr7_3:82038298-82038317 None:intergenic 35.0%
!!! CCAAGAGCTTTCTTTGTTTT+TGG + chr7_3:82038295-82038314 Msa1129970:CDS 35.0%
ATATGGATAATTGTCAGCTC+GGG - chr7_3:82038368-82038387 None:intergenic 35.0%
CATATGGATAATTGTCAGCT+CGG - chr7_3:82038369-82038388 None:intergenic 35.0%
CTTGGATAATCAATGCCATA+TGG - chr7_3:82038385-82038404 None:intergenic 35.0%
! ATAATTACAGGTTTGGAGCT+TGG + chr7_3:82038690-82038709 Msa1129970:intron 35.0%
! TAATTACAGGTTTGGAGCTT+GGG + chr7_3:82038691-82038710 Msa1129970:intron 35.0%
ATTGAGAATTCCAATTCCAG+CGG - chr7_3:82038790-82038809 None:intergenic 35.0%
! TGTATGATGATTGGTTGGTT+TGG + chr7_3:82038953-82038972 Msa1129970:intron 35.0%
TTAGAATCTACAAGCAGCTA+AGG + chr7_3:82038989-82039008 Msa1129970:CDS 35.0%
AAAAGAGTAAGTGCACACAT+TGG + chr7_3:82039030-82039049 Msa1129970:CDS 35.0%
AATATACCCTGAGAACTTTG+CGG - chr7_3:82039209-82039228 None:intergenic 35.0%
CGTGGTTGCATGTTTAATAA+TGG + chr7_3:82039351-82039370 Msa1129970:intron 35.0%
!! CAAAATGTGTTAGTTGGTGA+GGG + chr7_3:82039403-82039422 Msa1129970:intron 35.0%
ATGTTGCAAGCATTACTAGA+TGG - chr7_3:82039698-82039717 None:intergenic 35.0%
TAGTAATGCTTGCAACATCT+TGG + chr7_3:82039700-82039719 Msa1129970:intron 35.0%
GTCTTAAGTGTTACACTTTG+TGG + chr7_3:82039790-82039809 Msa1129970:intron 35.0%
CTTAAGTGTTACACTTTGTG+GGG + chr7_3:82039792-82039811 Msa1129970:intron 35.0%
TGTTACGCTTAAAACAAGGT+AGG + chr7_3:82039815-82039834 Msa1129970:intron 35.0%
! TATGCAGAGGCTTTATGATT+TGG + chr7_3:82040036-82040055 Msa1129970:intron 35.0%
! ATGCAGAGGCTTTATGATTT+GGG + chr7_3:82040037-82040056 Msa1129970:intron 35.0%
AGATCACTAAACCAAGAGAT+TGG + chr7_3:82040205-82040224 Msa1129970:CDS 35.0%
TGATGCATATAGAATGCACA+TGG + chr7_3:82040249-82040268 Msa1129970:CDS 35.0%
AGTACATACCATAAGCTTGA+GGG - chr7_3:82040288-82040307 None:intergenic 35.0%
TCTATAGGAAGCTTGCAATA+TGG - chr7_3:82040312-82040331 None:intergenic 35.0%
GATTCATACTCTTGTGTGTT+AGG + chr7_3:82040548-82040567 Msa1129970:intron 35.0%
TGCTATGTCTCATGTTTAGT+AGG + chr7_3:82040613-82040632 Msa1129970:intron 35.0%
ATGCATTAAGGTCTCTGTTT+GGG - chr7_3:82040802-82040821 None:intergenic 35.0%
AATGCATTAAGGTCTCTGTT+TGG - chr7_3:82040803-82040822 None:intergenic 35.0%
! ACAGAGACCTTAATGCATTT+TGG + chr7_3:82040804-82040823 Msa1129970:CDS 35.0%
! CAGAGACCTTAATGCATTTT+GGG + chr7_3:82040805-82040824 Msa1129970:CDS 35.0%
ATGCATCCCAAAATGCATTA+AGG - chr7_3:82040814-82040833 None:intergenic 35.0%
TCATAGTCAACCAAATCCTT+AGG + chr7_3:82040861-82040880 Msa1129970:CDS 35.0%
CATAGTCAACCAAATCCTTA+GGG + chr7_3:82040862-82040881 Msa1129970:CDS 35.0%
ATAGTCAACCAAATCCTTAG+GGG + chr7_3:82040863-82040882 Msa1129970:CDS 35.0%
! ATGATAGTGCTGAGATTCAT+GGG - chr7_3:82040908-82040927 None:intergenic 35.0%
!! AAATGTTTTGGATGGATGGA+AGG - chr7_3:82040961-82040980 None:intergenic 35.0%
TTCCATCCATCCAAAACATT+TGG + chr7_3:82040960-82040979 Msa1129970:three_prime_UTR 35.0%
!! AACCAAATGTTTTGGATGGA+TGG - chr7_3:82040965-82040984 None:intergenic 35.0%
! CTTTTGTATTCCATAGCTAG+TGG + chr7_3:82041050-82041069 Msa1129970:three_prime_UTR 35.0%
CAAACCAGTACTTAAGAACT+TGG - chr7_3:82041085-82041104 None:intergenic 35.0%
TTGCACTTGGATTCAATCAA+AGG - chr7_3:82041154-82041173 None:intergenic 35.0%
CACAAAAGAAATGTTGCACT+TGG - chr7_3:82041167-82041186 None:intergenic 35.0%
! TTGATGAGTCGTGGTTTGTA+TGG - chr7_3:82038148-82038167 None:intergenic 40.0%
TGTCTCAATTTGATGAGTCG+TGG - chr7_3:82038157-82038176 None:intergenic 40.0%
CATTGCAATGGCTACTTCTT+TGG + chr7_3:82038222-82038241 Msa1129970:exon 40.0%
CAATGACTTTCTTGCTACCA+CGG + chr7_3:82038342-82038361 Msa1129970:CDS 40.0%
CGAGCTGACAATTATCCATA+TGG + chr7_3:82038367-82038386 Msa1129970:CDS 40.0%
TATCCAAGTCATAGACCTAC+TGG + chr7_3:82038397-82038416 Msa1129970:CDS 40.0%
ATCCAAGTCATAGACCTACT+GGG + chr7_3:82038398-82038417 Msa1129970:CDS 40.0%
! CGATCTTACTGATTAGGTCA+GGG - chr7_3:82038447-82038466 None:intergenic 40.0%
! TCGATCTTACTGATTAGGTC+AGG - chr7_3:82038448-82038467 None:intergenic 40.0%
GTTGGAGAGAAGCTTCTAAT+TGG + chr7_3:82038750-82038769 Msa1129970:CDS 40.0%
TGACGAGATCTTGCTGAAAA+AGG - chr7_3:82039144-82039163 None:intergenic 40.0%
! GCAAAATGTGTTAGTTGGTG+AGG + chr7_3:82039402-82039421 Msa1129970:intron 40.0%
ATGCCATTGTACAAACAGTG+AGG + chr7_3:82039906-82039925 Msa1129970:intron 40.0%
ACACCTCACTGTTTGTACAA+TGG - chr7_3:82039912-82039931 None:intergenic 40.0%
! TTTATGATTTGGGAGCTCGT+AGG + chr7_3:82040047-82040066 Msa1129970:CDS 40.0%
! TTATGATTTGGGAGCTCGTA+GGG + chr7_3:82040048-82040067 Msa1129970:CDS 40.0%
CTGATCATGTCAACAAGTTG+AGG - chr7_3:82040187-82040206 None:intergenic 40.0%
ATTACCAACCCTCAAGCTTA+TGG + chr7_3:82040277-82040296 Msa1129970:CDS 40.0%
CAGTACATACCATAAGCTTG+AGG - chr7_3:82040289-82040308 None:intergenic 40.0%
GTCAAGCCCAATTCAATAGT+TGG - chr7_3:82040695-82040714 None:intergenic 40.0%
ACTATTGAATTGGGCTTGAC+AGG + chr7_3:82040695-82040714 Msa1129970:intron 40.0%
GACAGGATTTGCAACATCAA+AGG + chr7_3:82040712-82040731 Msa1129970:intron 40.0%
TGCATTCCATCCATCTGAAA+AGG + chr7_3:82040829-82040848 Msa1129970:CDS 40.0%
!!! TGTTAGCCTTTTCAGATGGA+TGG - chr7_3:82040838-82040857 None:intergenic 40.0%
! TGATAGTGCTGAGATTCATG+GGG - chr7_3:82040907-82040926 None:intergenic 40.0%
! CATGATAGTGCTGAGATTCA+TGG - chr7_3:82040909-82040928 None:intergenic 40.0%
CATGAATCTCAGCACTATCA+TGG + chr7_3:82040907-82040926 Msa1129970:CDS 40.0%
TGATCAAGTCCTGGAATCTA+TGG - chr7_3:82040933-82040952 None:intergenic 40.0%
CATGCCAAGTTCTTAAGTAC+TGG + chr7_3:82041078-82041097 Msa1129970:three_prime_UTR 40.0%
AGACCAACGACAATTTGAGT+GGG - chr7_3:82041108-82041127 None:intergenic 40.0%
AAGACCAACGACAATTTGAG+TGG - chr7_3:82041109-82041128 None:intergenic 40.0%
! GGAGATTCTTTAGTGGACAG+TGG + chr7_3:82038316-82038335 Msa1129970:CDS 45.0%
!! ACTAGTAGTGGGCTCAAGTA+TGG - chr7_3:82038732-82038751 None:intergenic 45.0%
TACTTGAGCCCACTACTAGT+TGG + chr7_3:82038732-82038751 Msa1129970:CDS 45.0%
GCTTCTCTCCAACTAGTAGT+GGG - chr7_3:82038743-82038762 None:intergenic 45.0%
AGCTTCTCTCCAACTAGTAG+TGG - chr7_3:82038744-82038763 None:intergenic 45.0%
AATTCCAGCGGATGCAAAGT+TGG - chr7_3:82038778-82038797 None:intergenic 45.0%
AACTTTGCATCCGCTGGAAT+TGG + chr7_3:82038777-82038796 Msa1129970:CDS 45.0%
!! AAGTGCACACATTGGTTCAG+AGG + chr7_3:82039038-82039057 Msa1129970:CDS 45.0%
!! AGTGCACACATTGGTTCAGA+GGG + chr7_3:82039039-82039058 Msa1129970:CDS 45.0%
! GGGGTGTTACGCTTAAAACA+AGG + chr7_3:82039811-82039830 Msa1129970:intron 45.0%
AGCTCGTAGGGTTCTTGTAA+CGG + chr7_3:82040060-82040079 Msa1129970:CDS 45.0%
CCTCTCATAGCTAATTCTGC+TGG - chr7_3:82040109-82040128 None:intergenic 45.0%
CCAGCAGAATTAGCTATGAG+AGG + chr7_3:82040106-82040125 Msa1129970:CDS 45.0%
GCAGAATTAGCTATGAGAGG+AGG + chr7_3:82040109-82040128 Msa1129970:CDS 45.0%
AGATGTCAGAGCCAATCTCT+TGG - chr7_3:82040219-82040238 None:intergenic 45.0%
CATACCATAAGCTTGAGGGT+TGG - chr7_3:82040284-82040303 None:intergenic 45.0%
ACATCAAAGGTAGCATGCTG+TGG + chr7_3:82040725-82040744 Msa1129970:CDS 45.0%
! AAGGGCCATACAATGGACTT+GGG + chr7_3:82040750-82040769 Msa1129970:CDS 45.0%
CAAAGCCCAAGTCCATTGTA+TGG - chr7_3:82040758-82040777 None:intergenic 45.0%
TCTGTTTGGGCACAAGTTTG+AGG - chr7_3:82040789-82040808 None:intergenic 45.0%
CTATCATGGCCATAGATTCC+AGG + chr7_3:82040921-82040940 Msa1129970:CDS 45.0%
AAGGAAGGATGATCAAGTCC+TGG - chr7_3:82040942-82040961 None:intergenic 45.0%
!! GTTTTGGATGGATGGAAGGA+AGG - chr7_3:82040957-82040976 None:intergenic 45.0%
GCATGACAAACCACTAGCTA+TGG - chr7_3:82041063-82041082 None:intergenic 45.0%
TTGCCCACTCAAATTGTCGT+TGG + chr7_3:82041102-82041121 Msa1129970:three_prime_UTR 45.0%
CCATTAGAGAAACGCCCAGT+AGG - chr7_3:82038415-82038434 None:intergenic 50.0%
CCTACTGGGCGTTTCTCTAA+TGG + chr7_3:82038412-82038431 Msa1129970:CDS 50.0%
! GGGCTCAAGTATGGAAGTGT+AGG - chr7_3:82038723-82038742 None:intergenic 50.0%
! GTACGAGTGCTCTGTTGACT+AGG - chr7_3:82039074-82039093 None:intergenic 50.0%
GCACTCGTACTCATCACTCT+TGG + chr7_3:82039084-82039103 Msa1129970:CDS 50.0%
CTCGTACTCATCACTCTTGG+TGG + chr7_3:82039087-82039106 Msa1129970:CDS 50.0%
CCTGAGAACTTTGCGGTACT+CGG - chr7_3:82039202-82039221 None:intergenic 50.0%
! CGAGTACCGCAAAGTTCTCA+GGG + chr7_3:82039200-82039219 Msa1129970:CDS 50.0%
GCTCGTAGGGTTCTTGTAAC+GGG + chr7_3:82040061-82040080 Msa1129970:CDS 50.0%
! AGGGTTCTTGTAACGGGAAC+AGG + chr7_3:82040067-82040086 Msa1129970:CDS 50.0%
! TGTAACGGGAACAGGACCAA+TGG + chr7_3:82040075-82040094 Msa1129970:CDS 50.0%
! GTAACGGGAACAGGACCAAT+GGG + chr7_3:82040076-82040095 Msa1129970:CDS 50.0%
TAACGGGAACAGGACCAATG+GGG + chr7_3:82040077-82040096 Msa1129970:CDS 50.0%
GCTATGAGAGGAGGTCCAAA+TGG + chr7_3:82040118-82040137 Msa1129970:CDS 50.0%
TCGACGCTACACTGACCATT+TGG - chr7_3:82040136-82040155 None:intergenic 50.0%
AAGGTAGCATGCTGTGGACA+AGG + chr7_3:82040731-82040750 Msa1129970:CDS 50.0%
AGGTAGCATGCTGTGGACAA+GGG + chr7_3:82040732-82040751 Msa1129970:CDS 50.0%
TGTGGACAAGGGCCATACAA+TGG + chr7_3:82040743-82040762 Msa1129970:CDS 50.0%
! CAAGGGCCATACAATGGACT+TGG + chr7_3:82040749-82040768 Msa1129970:CDS 50.0%
! TTTGGGCACAAGTTTGAGGC+TGG - chr7_3:82040785-82040804 None:intergenic 50.0%
ATAATTGTCAGCTCGGGCCG+TGG - chr7_3:82038362-82038381 None:intergenic 55.0%
CGCCCAGTAGGTCTATGACT+TGG - chr7_3:82038403-82038422 None:intergenic 55.0%
! CCGAGTACCGCAAAGTTCTC+AGG + chr7_3:82039199-82039218 Msa1129970:CDS 55.0%
! GAGCACTGCCCCTAAGGATT+TGG - chr7_3:82040874-82040893 None:intergenic 55.0%
! TGTACTGAGCACTGCCCCTA+AGG - chr7_3:82040880-82040899 None:intergenic 55.0%
GGTGCCAACTTTGCATCCGC+TGG + chr7_3:82038771-82038790 Msa1129970:CDS 60.0%
TCTGCTGGTGCACACCCCAT+TGG - chr7_3:82040094-82040113 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 82038134 82041214 82038134 ID=Msa1129970;Name=Msa1129970
chr7_3 mRNA 82038134 82041214 82038134 ID=Msa1129970-mRNA-1;Parent=Msa1129970;Name=Msa1129970-mRNA-1;_AED=0.30;_eAED=0.30;_QI=95|1|1|1|1|1|5|265|362
chr7_3 exon 82038134 82038457 82038134 ID=Msa1129970-mRNA-1:exon:23986;Parent=Msa1129970-mRNA-1
chr7_3 exon 82038700 82038827 82038700 ID=Msa1129970-mRNA-1:exon:23987;Parent=Msa1129970-mRNA-1
chr7_3 exon 82038979 82039221 82038979 ID=Msa1129970-mRNA-1:exon:23988;Parent=Msa1129970-mRNA-1
chr7_3 exon 82040043 82040298 82040043 ID=Msa1129970-mRNA-1:exon:23989;Parent=Msa1129970-mRNA-1
chr7_3 exon 82040717 82041214 82040717 ID=Msa1129970-mRNA-1:exon:23990;Parent=Msa1129970-mRNA-1
chr7_3 five_prime_UTR 82038134 82038228 82038134 ID=Msa1129970-mRNA-1:five_prime_utr;Parent=Msa1129970-mRNA-1
chr7_3 CDS 82038229 82038457 82038229 ID=Msa1129970-mRNA-1:cds;Parent=Msa1129970-mRNA-1
chr7_3 CDS 82038700 82038827 82038700 ID=Msa1129970-mRNA-1:cds;Parent=Msa1129970-mRNA-1
chr7_3 CDS 82038979 82039221 82038979 ID=Msa1129970-mRNA-1:cds;Parent=Msa1129970-mRNA-1
chr7_3 CDS 82040043 82040298 82040043 ID=Msa1129970-mRNA-1:cds;Parent=Msa1129970-mRNA-1
chr7_3 CDS 82040717 82040949 82040717 ID=Msa1129970-mRNA-1:cds;Parent=Msa1129970-mRNA-1
chr7_3 three_prime_UTR 82040950 82041214 82040950 ID=Msa1129970-mRNA-1:three_prime_utr;Parent=Msa1129970-mRNA-1
Gene Sequence

>Msa1129970

ATGGCTACTTCTTTGGTGATTGCTTTTTGTGTAATGATAAGCTTGGTTGGTTGTGCTTATGCTCAACCAAGAGCTTTCTTTGTTTTTGGAGATTCTTTAGTGGACAGTGGTAACAATGACTTTCTTGCTACCACGGCCCGAGCTGACAATTATCCATATGGCATTGATTATCCAAGTCATAGACCTACTGGGCGTTTCTCTAATGGCTACAATATCCCTGACCTAATCAGTTTGGAGCTTGGGTTAGAGCCTACACTTCCATACTTGAGCCCACTACTAGTTGGAGAGAAGCTTCTAATTGGTGCCAACTTTGCATCCGCTGGAATTGGAATTCTCAATGATACCGGATTCCAATTTATCCATATCATTAGAATCTACAAGCAGCTAAGGCTATTTGAATTGTATCAGAAAAGAGTAAGTGCACACATTGGTTCAGAGGGAGCAAGAAACCTAGTCAACAGAGCACTCGTACTCATCACTCTTGGTGGCAATGATTTTGTCAACAACTATTATTTGGTTCCTTTTTCAGCAAGATCTCGTCAATTTTCTCTCCCAGATTATGTTCGTTATCTCATTTCCGAGTACCGCAAAGTTCTCAGGAGGCTTTATGATTTGGGAGCTCGTAGGGTTCTTGTAACGGGAACAGGACCAATGGGGTGTGCACCAGCAGAATTAGCTATGAGAGGAGGTCCAAATGGTCAGTGTAGCGTCGAACTTGAGAGAGCTGCATCCTTATACAATCCTCAACTTGTTGACATGATCAGATCACTAAACCAAGAGATTGGCTCTGACATCTTCGTTGCTGCTGATGCATATAGAATGCACATGGATTACATTACCAACCCTCAAGCTTATGGATTTGCAACATCAAAGGTAGCATGCTGTGGACAAGGGCCATACAATGGACTTGGGCTTTGTACACCAGCCTCAAACTTGTGCCCAAACAGAGACCTTAATGCATTTTGGGATGCATTCCATCCATCTGAAAAGGCTAACAAAATCATAGTCAACCAAATCCTTAGGGGCAGTGCTCAGTACATGTACCCCATGAATCTCAGCACTATCATGGCCATAGATTCCAGGACTTGA

Protein sequence

>Msa1129970

MATSLVIAFCVMISLVGCAYAQPRAFFVFGDSLVDSGNNDFLATTARADNYPYGIDYPSHRPTGRFSNGYNIPDLISLELGLEPTLPYLSPLLVGEKLLIGANFASAGIGILNDTGFQFIHIIRIYKQLRLFELYQKRVSAHIGSEGARNLVNRALVLITLGGNDFVNNYYLVPFSARSRQFSLPDYVRYLISEYRKVLRRLYDLGARRVLVTGTGPMGCAPAELAMRGGPNGQCSVELERAASLYNPQLVDMIRSLNQEIGSDIFVAADAYRMHMDYITNPQAYGFATSKVACCGQGPYNGLGLCTPASNLCPNRDLNAFWDAFHPSEKANKIIVNQILRGSAQYMYPMNLSTIMAIDSRT*