AlfalfaGEDB | Msa1129970

M. sativa cultivar zhongmu-4 / Msa1129970

KEGG: -
GO: GO:0001101 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0010035 GO:0010038 GO:0010226 GO:0014070 GO:0042221 GO:0042493 GO:0042538 GO:0046677 GO:0050896 GO:1901700
PFAM: PF00657.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1129970	XP_003626493.1	98.895	362	4	0	1	362	1	362	0.0	737

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1129970	sp\|Q8LB81\|GDL79_ARATH	71.901	363	100	2	1	362	5	366	0.0	545

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1129970	G7L2Y7	98.895	362	4	0	1	362	1	362	0.0	737

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004390	Msa1129970	0.813074	3.076282e-51	-8.615850e-47
Msa0005050	Msa1129970	0.803208	3.889570e-49	-8.615850e-47
Msa0006980	Msa1129970	0.811388	7.177165e-51	-8.615850e-47
Msa0010560	Msa1129970	0.806500	7.982369e-50	-8.615850e-47
Msa0016120	Msa1129970	0.805730	1.159354e-49	-8.615850e-47
Msa0019600	Msa1129970	0.873373	1.545770e-67	-8.615850e-47
Msa0043210	Msa1129970	0.814975	1.171338e-51	-8.615850e-47
Msa0050040	Msa1129970	0.842227	2.940473e-58	-8.615850e-47
Msa0066320	Msa1129970	0.835744	1.404315e-56	-8.615850e-47
Msa0069330	Msa1129970	0.815644	8.320111e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1129970	MtrunA17_Chr7g0275001	98.895	362	4	0	1	362	1	362	0.0	737
Msa1129970	MtrunA17_Chr1g0189931	74.044	366	87	3	1	359	1	365	0.0	569
Msa1129970	MtrunA17_Chr1g0189901	72.951	366	92	5	1	360	1	365	0.0	547
Msa1129970	MtrunA17_Chr7g0275011	72.269	357	96	2	7	361	14	369	0.0	546
Msa1129970	MtrunA17_Chr7g0274991	70.166	362	102	2	1	362	14	369	0.0	529
Msa1129970	MtrunA17_Chr6g0457921	72.303	343	93	2	21	362	25	366	0.0	524
Msa1129970	MtrunA17_Chr7g0275021	71.802	344	96	1	19	362	28	370	0.0	521
Msa1129970	MtrunA17_Chr4g0008851	69.359	359	106	3	7	362	13	370	0.0	520
Msa1129970	MtrunA17_Chr1g0182811	63.435	361	127	4	4	360	10	369	1.56e-171	482
Msa1129970	MtrunA17_Chr7g0215961	64.345	359	111	3	4	362	15	356	8.32e-169	474

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1129970	AT5G33370.1	71.901	363	100	2	1	362	5	366	0.0	545
Msa1129970	AT3G04290.1	75.221	339	83	1	22	360	26	363	0.0	538
Msa1129970	AT5G18430.1	66.298	362	118	2	1	358	1	362	6.59e-175	491
Msa1129970	AT4G28780.1	63.866	357	128	1	5	361	11	366	1.36e-171	482
Msa1129970	AT5G33370.2	71.277	282	79	2	6	286	10	290	1.81e-145	415
Msa1129970	AT5G15720.1	39.645	338	185	4	25	352	30	358	2.39e-80	250
Msa1129970	AT2G23540.1	38.872	337	200	5	25	355	48	384	1.23e-77	244
Msa1129970	AT3G50400.1	40.774	336	190	8	25	352	34	368	1.12e-76	241
Msa1129970	AT1G71691.2	39.583	336	196	6	25	359	55	384	4.89e-73	232
Msa1129970	AT1G29670.1	37.989	358	213	7	5	358	11	363	2.24e-72	229

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Find 114 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATTAACCAAATGTTT+TGG	0.292262	7_3:-82040970	None:intergenic
AAAAGAGTAAGTGCACACAT+TGG	0.674961	7_3:+82039030	Msa1129970:CDS
AACAAGTTGAGGATTGTATA+AGG	0.398978	7_3:-82040173	None:intergenic
AACTTTGCATCCGCTGGAAT+TGG	0.294980	7_3:+82038777	Msa1129970:CDS
AAGACCAACGACAATTTGAG+TGG	0.622686	7_3:-82041106	None:intergenic
AAGATTAATGGATAAATTAA+AGG	0.248361	7_3:-82041030	None:intergenic
AAGGAAGGATGATCAAGTCC+TGG	0.571193	7_3:-82040939	None:intergenic
AAGGGCCATACAATGGACTT+GGG	0.633513	7_3:+82040750	Msa1129970:CDS
AAGGTAGCATGCTGTGGACA+AGG	0.527586	7_3:+82040731	Msa1129970:CDS
AAGTGCACACATTGGTTCAG+AGG	0.601118	7_3:+82039038	Msa1129970:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTAAAAAAACACTATCAGCT+AGG	+	chr7_3:82038482-82038501	Msa1129970:intron	30.0%
AATTCTCTCGTCACTAAATT+TGG	-	chr7_3:82038553-82038572	None:intergenic	30.0%
ATTGGAATTCTCAATGATAC+CGG	+	chr7_3:82038795-82038814	Msa1129970:CDS	30.0%
TACACTTACAAATTGGAATC+CGG	-	chr7_3:82038817-82038836	None:intergenic	30.0%
TAACATGTATGATGATTGGT+TGG	+	chr7_3:82038948-82038967	Msa1129970:intron	30.0%
GCTTGTAGATTCTAATGATA+TGG	-	chr7_3:82038984-82039003	None:intergenic	30.0%
TGAGATAACGAACATAATCT+GGG	-	chr7_3:82039176-82039195	None:intergenic	30.0%
ATGAGATAACGAACATAATC+TGG	-	chr7_3:82039177-82039196	None:intergenic	30.0%
TTAATAATGGCTGTTAGTAG+AGG	+	chr7_3:82039364-82039383	Msa1129970:intron	30.0%
TTTGTGCAAAATGTGTTAGT+TGG	+	chr7_3:82039397-82039416	Msa1129970:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	82038134	82041214	82038134	ID=Msa1129970;Name=Msa1129970
chr7_3	mRNA	82038134	82041214	82038134	ID=Msa1129970-mRNA-1;Parent=Msa1129970;Name=Msa1129970-mRNA-1;_AED=0.30;_eAED=0.30;_QI=95\|1\|1\|1\|1\|1\|5\|265\|362
chr7_3	exon	82038134	82038457	82038134	ID=Msa1129970-mRNA-1:exon:23986;Parent=Msa1129970-mRNA-1
chr7_3	exon	82038700	82038827	82038700	ID=Msa1129970-mRNA-1:exon:23987;Parent=Msa1129970-mRNA-1
chr7_3	exon	82038979	82039221	82038979	ID=Msa1129970-mRNA-1:exon:23988;Parent=Msa1129970-mRNA-1
chr7_3	exon	82040043	82040298	82040043	ID=Msa1129970-mRNA-1:exon:23989;Parent=Msa1129970-mRNA-1
chr7_3	exon	82040717	82041214	82040717	ID=Msa1129970-mRNA-1:exon:23990;Parent=Msa1129970-mRNA-1
chr7_3	five_prime_UTR	82038134	82038228	82038134	ID=Msa1129970-mRNA-1:five_prime_utr;Parent=Msa1129970-mRNA-1
chr7_3	CDS	82038229	82038457	82038229	ID=Msa1129970-mRNA-1:cds;Parent=Msa1129970-mRNA-1
chr7_3	CDS	82038700	82038827	82038700	ID=Msa1129970-mRNA-1:cds;Parent=Msa1129970-mRNA-1
chr7_3	CDS	82038979	82039221	82038979	ID=Msa1129970-mRNA-1:cds;Parent=Msa1129970-mRNA-1
chr7_3	CDS	82040043	82040298	82040043	ID=Msa1129970-mRNA-1:cds;Parent=Msa1129970-mRNA-1
chr7_3	CDS	82040717	82040949	82040717	ID=Msa1129970-mRNA-1:cds;Parent=Msa1129970-mRNA-1
chr7_3	three_prime_UTR	82040950	82041214	82040950	ID=Msa1129970-mRNA-1:three_prime_utr;Parent=Msa1129970-mRNA-1

Gene Sequence

>Msa1129970

ATGGCTACTTCTTTGGTGATTGCTTTTTGTGTAATGATAAGCTTGGTTGGTTGTGCTTATGCTCAACCAAGAGCTTTCTTTGTTTTTGGAGATTCTTTAGTGGACAGTGGTAACAATGACTTTCTTGCTACCACGGCCCGAGCTGACAATTATCCATATGGCATTGATTATCCAAGTCATAGACCTACTGGGCGTTTCTCTAATGGCTACAATATCCCTGACCTAATCAGTTTGGAGCTTGGGTTAGAGCCTACACTTCCATACTTGAGCCCACTACTAGTTGGAGAGAAGCTTCTAATTGGTGCCAACTTTGCATCCGCTGGAATTGGAATTCTCAATGATACCGGATTCCAATTTATCCATATCATTAGAATCTACAAGCAGCTAAGGCTATTTGAATTGTATCAGAAAAGAGTAAGTGCACACATTGGTTCAGAGGGAGCAAGAAACCTAGTCAACAGAGCACTCGTACTCATCACTCTTGGTGGCAATGATTTTGTCAACAACTATTATTTGGTTCCTTTTTCAGCAAGATCTCGTCAATTTTCTCTCCCAGATTATGTTCGTTATCTCATTTCCGAGTACCGCAAAGTTCTCAGGAGGCTTTATGATTTGGGAGCTCGTAGGGTTCTTGTAACGGGAACAGGACCAATGGGGTGTGCACCAGCAGAATTAGCTATGAGAGGAGGTCCAAATGGTCAGTGTAGCGTCGAACTTGAGAGAGCTGCATCCTTATACAATCCTCAACTTGTTGACATGATCAGATCACTAAACCAAGAGATTGGCTCTGACATCTTCGTTGCTGCTGATGCATATAGAATGCACATGGATTACATTACCAACCCTCAAGCTTATGGATTTGCAACATCAAAGGTAGCATGCTGTGGACAAGGGCCATACAATGGACTTGGGCTTTGTACACCAGCCTCAAACTTGTGCCCAAACAGAGACCTTAATGCATTTTGGGATGCATTCCATCCATCTGAAAAGGCTAACAAAATCATAGTCAACCAAATCCTTAGGGGCAGTGCTCAGTACATGTACCCCATGAATCTCAGCACTATCATGGCCATAGATTCCAGGACTTGA

Protein sequence

>Msa1129970

MATSLVIAFCVMISLVGCAYAQPRAFFVFGDSLVDSGNNDFLATTARADNYPYGIDYPSHRPTGRFSNGYNIPDLISLELGLEPTLPYLSPLLVGEKLLIGANFASAGIGILNDTGFQFIHIIRIYKQLRLFELYQKRVSAHIGSEGARNLVNRALVLITLGGNDFVNNYYLVPFSARSRQFSLPDYVRYLISEYRKVLRRLYDLGARRVLVTGTGPMGCAPAELAMRGGPNGQCSVELERAASLYNPQLVDMIRSLNQEIGSDIFVAADAYRMHMDYITNPQAYGFATSKVACCGQGPYNGLGLCTPASNLCPNRDLNAFWDAFHPSEKANKIIVNQILRGSAQYMYPMNLSTIMAIDSRT*