AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0539030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0539030 MtrunA17_Chr8g0390881 90.506 158 14 1 1 158 1 157 1.15e-96 289
Msa0539030 MtrunA17_Chr5g0430171 59.355 155 60 2 9 163 12 163 1.85e-59 185
Msa0539030 MtrunA17_Chr5g0430101 61.290 155 57 2 9 163 11 162 6.49e-59 191
Msa0539030 MtrunA17_Chr6g0484811 58.553 152 63 0 1 152 1 152 8.73e-58 188
Msa0539030 MtrunA17_Chr5g0430131 60.000 155 59 2 9 163 12 163 1.23e-57 188
Msa0539030 MtrunA17_Chr5g0430091 61.074 149 55 2 9 157 12 157 1.34e-57 188
Msa0539030 MtrunA17_Chr5g0430081 59.477 153 58 3 1 152 1 150 1.15e-56 186
Msa0539030 MtrunA17_Chr5g0430111 58.710 155 61 2 9 163 12 163 2.58e-55 180
Msa0539030 MtrunA17_Chr5g0430031 60.417 144 54 2 9 152 12 152 4.60e-55 181
Msa0539030 MtrunA17_Chr6g0484841 67.241 116 38 0 35 150 35 150 1.08e-52 175
Msa0539030 MtrunA17_Chr8g0382901 53.521 142 64 1 8 149 1 140 4.23e-45 158
Msa0539030 MtrunA17_Chr8g0382901 51.899 158 67 2 1 149 447 604 2.06e-44 156
Msa0539030 MtrunA17_Chr2g0310371 52.817 142 65 1 8 149 1 140 1.61e-44 144
Msa0539030 MtrunA17_Chr3g0101611 52.756 127 60 0 26 152 27 153 2.00e-44 153
Msa0539030 MtrunA17_Chr2g0310391 53.521 142 64 1 8 149 1 140 3.97e-44 152
Msa0539030 MtrunA17_Chr2g0310381 53.521 142 64 1 8 149 1 140 8.41e-44 151
Msa0539030 MtrunA17_Chr3g0101631 47.297 148 74 2 9 152 5 152 4.52e-43 149
Msa0539030 MtrunA17_Chr3g0101581 45.070 142 78 0 8 149 8 149 1.01e-42 149
Msa0539030 MtrunA17_Chr3g0116681 46.795 156 72 3 1 152 7 155 5.92e-42 147
Msa0539030 MtrunA17_Chr3g0101621 48.966 145 73 1 9 152 5 149 6.36e-42 146
Msa0539030 MtrunA17_Chr5g0403321 51.200 125 58 1 29 150 26 150 1.19e-41 145
Msa0539030 MtrunA17_Chr3g0101601 47.183 142 73 2 12 152 12 152 4.42e-41 144
Msa0539030 MtrunA17_Chr3g0101571 45.070 142 78 0 8 149 7 148 5.42e-41 144
Msa0539030 MtrunA17_Chr5g0403331 45.695 151 72 2 10 150 1 151 7.81e-41 144
Msa0539030 MtrunA17_Chr3g0101821 44.595 148 81 1 6 152 4 151 4.77e-40 141
Msa0539030 MtrunA17_Chr3g0101691 50.685 146 67 4 12 152 9 154 7.42e-40 141
Msa0539030 MtrunA17_Chr3g0101711 46.897 145 75 2 10 152 9 153 4.04e-39 139
Msa0539030 MtrunA17_Chr3g0101751 45.270 148 76 3 6 152 15 158 8.81e-39 138
Msa0539030 MtrunA17_Chr4g0076161 43.919 148 80 1 8 152 8 155 4.19e-38 136
Msa0539030 MtrunA17_Chr5g0430051 58.929 112 43 2 4 115 8 116 5.08e-38 126
Msa0539030 MtrunA17_Chr3g0101661 46.053 152 79 3 10 158 9 160 2.21e-37 134
Msa0539030 MtrunA17_Chr3g0101731 42.953 149 83 2 6 152 4 152 2.81e-37 134
Msa0539030 MtrunA17_Chr6g0463791 41.558 154 85 2 8 158 8 159 4.39e-37 133
Msa0539030 MtrunA17_Chr5g0403351 44.521 146 76 2 10 150 5 150 6.18e-37 133
Msa0539030 MtrunA17_Chr3g0101761 44.000 150 79 3 6 152 4 151 9.70e-37 132
Msa0539030 MtrunA17_Chr8g0357431 40.541 148 85 2 6 152 8 153 9.72e-37 132
Msa0539030 MtrunA17_Chr2g0280261 47.656 128 66 1 26 152 23 150 1.24e-36 132
Msa0539030 MtrunA17_Chr3g0101721 42.254 142 81 1 12 152 12 153 1.49e-36 132
Msa0539030 MtrunA17_Chr6g0463611 40.000 155 89 2 7 158 20 173 2.55e-36 128
Msa0539030 MtrunA17_Chr3g0101651 45.695 151 78 3 5 152 5 154 3.79e-36 131
Msa0539030 MtrunA17_Chr6g0466331 43.871 155 81 3 10 158 6 160 4.55e-36 130
Msa0539030 MtrunA17_Chr3g0101811 41.333 150 85 2 6 152 4 153 8.35e-36 130
Msa0539030 MtrunA17_Chr6g0472311 44.295 149 76 2 11 152 8 156 1.11e-35 130
Msa0539030 MtrunA17_Chr8g0357421 41.216 148 84 2 6 152 8 153 1.54e-35 129
Msa0539030 MtrunA17_Chr1g0167321 45.324 139 74 2 16 152 12 150 3.01e-35 128
Msa0539030 MtrunA17_Chr4g0047631 44.444 153 81 3 2 152 14 164 4.19e-35 128
Msa0539030 MtrunA17_Chr5g0431631 42.143 140 77 2 9 146 24 161 4.21e-35 120
Msa0539030 MtrunA17_Chr8g0361471 43.226 155 82 3 10 158 6 160 4.86e-35 128
Msa0539030 MtrunA17_Chr3g0116741 44.138 145 75 2 4 148 24 162 4.91e-35 128
Msa0539030 MtrunA17_Chr5g0445421 43.357 143 74 2 14 149 84 226 6.88e-35 128
Msa0539030 MtrunA17_Chr3g0101831 41.176 153 87 2 8 157 6 158 7.08e-35 127
Msa0539030 MtrunA17_Chr1g0162811 41.781 146 83 2 8 152 9 153 7.31e-35 127
Msa0539030 MtrunA17_Chr6g0465511 43.448 145 80 2 10 152 6 150 8.78e-35 127
Msa0539030 MtrunA17_Chr5g0446151 42.963 135 76 1 19 152 23 157 9.84e-35 127
Msa0539030 MtrunA17_Chr5g0446161 39.216 153 84 3 9 152 5 157 1.44e-34 127
Msa0539030 MtrunA17_Chr5g0445441 42.177 147 78 2 13 152 50 196 1.78e-34 127
Msa0539030 MtrunA17_Chr4g0058281 41.958 143 83 0 10 152 19 161 2.38e-34 126
Msa0539030 MtrunA17_Chr5g0445751 39.869 153 86 2 1 152 13 160 2.45e-34 123
Msa0539030 MtrunA17_Chr4g0020041 42.038 157 81 4 8 157 5 158 2.95e-34 126
Msa0539030 MtrunA17_Chr1g0156101 53.448 116 53 1 38 152 33 148 3.62e-34 125
Msa0539030 MtrunA17_Chr3g0101671 43.624 149 80 3 6 151 6 153 4.88e-34 125
Msa0539030 MtrunA17_Chr3g0101701 48.276 116 59 1 38 152 39 154 4.94e-34 125
Msa0539030 MtrunA17_Chr1g0162801 43.243 148 78 2 6 152 11 153 5.58e-34 125
Msa0539030 MtrunA17_Chr3g0094171 36.709 158 100 0 15 172 18 175 6.32e-34 125
Msa0539030 MtrunA17_Chr3g0101801 39.189 148 89 1 6 152 11 158 7.20e-34 125
Msa0539030 MtrunA17_Chr8g0344151 45.536 112 61 0 38 149 37 148 7.54e-34 125
Msa0539030 MtrunA17_Chr6g0463801 47.414 116 60 1 38 152 38 153 7.77e-34 124
Msa0539030 MtrunA17_Chr4g0058231 42.553 141 75 2 12 152 9 143 9.55e-34 124
Msa0539030 MtrunA17_Chr1g0156061 50.862 116 56 1 38 152 56 171 9.67e-34 124
Msa0539030 MtrunA17_Chr5g0445451 40.397 151 85 2 4 152 8 155 1.45e-33 124
Msa0539030 MtrunA17_Chr5g0445411 43.590 117 64 1 38 152 46 162 1.52e-33 117
Msa0539030 MtrunA17_Chr5g0431641 42.958 142 78 2 11 149 11 152 1.90e-33 124
Msa0539030 MtrunA17_Chr8g0344181 46.018 113 61 0 38 150 39 151 2.31e-33 123
Msa0539030 MtrunA17_Chr1g0174481 39.474 152 91 1 9 159 6 157 2.93e-33 123
Msa0539030 MtrunA17_Chr4g0047661 43.137 153 79 3 4 152 15 163 3.71e-33 123
Msa0539030 MtrunA17_Chr4g0011861 42.857 126 71 1 28 152 20 145 3.85e-33 119
Msa0539030 MtrunA17_Chr6g0484771 64.198 81 29 0 72 152 1 81 6.36e-33 114
Msa0539030 MtrunA17_Chr1g0156081 50.862 116 56 1 38 152 57 172 1.21e-32 122
Msa0539030 MtrunA17_Chr4g0058201 47.826 115 60 0 38 152 29 143 1.98e-32 120
Msa0539030 MtrunA17_Chr7g0258221 39.041 146 81 3 12 152 7 149 1.99e-32 121
Msa0539030 MtrunA17_Chr4g0047691 41.935 155 82 2 4 152 15 167 2.13e-32 121
Msa0539030 MtrunA17_Chr4g0024771 40.411 146 84 2 10 152 10 155 2.79e-32 120
Msa0539030 MtrunA17_Chr5g0445531 47.009 117 60 1 38 152 39 155 4.83e-32 120
Msa0539030 MtrunA17_Chr5g0445461 37.931 145 83 2 13 150 9 153 6.15e-32 119
Msa0539030 MtrunA17_Chr3g0094231 44.531 128 71 0 31 158 30 157 6.23e-32 119
Msa0539030 MtrunA17_Chr1g0174461 40.136 147 79 4 10 152 10 151 9.96e-32 119
Msa0539030 MtrunA17_Chr5g0431671 46.281 121 62 1 32 149 33 153 1.94e-31 118
Msa0539030 MtrunA17_Chr8g0372251 40.625 128 76 0 37 164 35 162 2.27e-31 118
Msa0539030 MtrunA17_Chr3g0117321 44.545 110 61 0 39 148 9 118 2.30e-31 110
Msa0539030 MtrunA17_Chr5g0405001 38.000 150 86 1 3 152 17 159 2.67e-31 118
Msa0539030 MtrunA17_Chr4g0047641 40.506 158 85 2 1 152 11 165 3.10e-31 117
Msa0539030 MtrunA17_Chr4g0011871 41.667 144 83 1 10 152 2 145 3.19e-31 117
Msa0539030 MtrunA17_Chr5g0419691 40.278 144 85 1 10 152 2 145 5.45e-31 117
Msa0539030 MtrunA17_Chr4g0058191 41.176 136 77 1 17 152 8 140 6.84e-31 116
Msa0539030 MtrunA17_Chr5g0445381 46.154 117 61 1 38 152 70 186 1.88e-30 115
Msa0539030 MtrunA17_Chr1g0174441 40.690 145 82 2 10 152 29 171 3.69e-30 115
Msa0539030 MtrunA17_Chr1g0174451 36.735 147 89 3 9 152 7 152 3.77e-29 112
Msa0539030 MtrunA17_Chr4g0035921 36.735 147 80 2 13 152 12 152 2.68e-28 109
Msa0539030 MtrunA17_Chr3g0084921 36.111 144 92 0 9 152 7 150 2.85e-28 109
Msa0539030 MtrunA17_Chr8g0344191 36.552 145 90 1 6 150 40 182 3.21e-28 109
Msa0539030 MtrunA17_Chr4g0058261 46.018 113 59 1 39 149 64 176 3.62e-28 109
Msa0539030 MtrunA17_Chr8g0355961 37.931 145 88 1 4 148 10 152 3.92e-28 109
Msa0539030 MtrunA17_Chr7g0265611 38.462 130 80 0 23 152 32 161 5.58e-28 108
Msa0539030 MtrunA17_Chr4g0030701 43.966 116 65 0 37 152 35 150 7.84e-28 108
Msa0539030 MtrunA17_Chr4g0011881 38.346 133 80 2 21 152 15 146 1.26e-27 107
Msa0539030 MtrunA17_Chr4g0011931 37.584 149 86 3 6 152 2 145 1.34e-27 105
Msa0539030 MtrunA17_Chr4g0061381 48.077 104 54 0 46 149 40 143 1.74e-27 107
Msa0539030 MtrunA17_Chr8g0356001 39.189 148 80 1 1 148 15 152 2.11e-27 107
Msa0539030 MtrunA17_Chr4g0011921 36.986 146 87 2 8 152 4 145 2.61e-27 107
Msa0539030 MtrunA17_Chr3g0086651 50.000 106 53 0 44 149 39 144 2.88e-27 107
Msa0539030 MtrunA17_Chr3g0086661 50.000 106 53 0 44 149 39 144 2.97e-27 107
Msa0539030 MtrunA17_Chr1g0174471 36.111 144 92 0 9 152 22 165 5.53e-27 106
Msa0539030 MtrunA17_Chr5g0401691 32.414 145 93 1 8 152 27 166 9.80e-27 105
Msa0539030 MtrunA17_Chr7g0254641 39.823 113 68 0 38 150 38 150 1.28e-26 105
Msa0539030 MtrunA17_Chr5g0406651 37.956 137 82 2 17 152 12 146 1.69e-26 104
Msa0539030 MtrunA17_Chr1g0200961 38.028 142 78 2 6 147 7 138 3.54e-26 103
Msa0539030 MtrunA17_Chr3g0086691 48.113 106 55 0 44 149 39 144 4.17e-26 103
Msa0539030 MtrunA17_Chr8g0362701 36.806 144 91 0 9 152 7 150 5.30e-26 103
Msa0539030 MtrunA17_Chr5g0395381 37.931 145 87 2 6 148 10 153 5.83e-26 103
Msa0539030 MtrunA17_Chr5g0395321 37.931 145 87 2 6 148 10 153 6.51e-26 103
Msa0539030 MtrunA17_Chr1g0160851 36.486 148 91 1 5 152 5 149 3.12e-25 101
Msa0539030 MtrunA17_Chr4g0008101 31.765 170 114 2 12 179 14 183 3.25e-25 101
Msa0539030 MtrunA17_Chr4g0011981 38.333 120 71 2 35 152 27 145 4.51e-25 100
Msa0539030 MtrunA17_Chr1g0205361 34.667 150 89 2 9 152 3 149 8.22e-25 100
Msa0539030 MtrunA17_Chr2g0314721 35.915 142 89 1 9 148 14 155 8.84e-25 99.8
Msa0539030 MtrunA17_Chr5g0402971 34.722 144 89 2 31 169 31 174 9.41e-25 97.8
Msa0539030 MtrunA17_Chr4g0011961 33.548 155 96 3 6 158 2 151 1.90e-24 99.0
Msa0539030 MtrunA17_Chr1g0174421 39.655 116 69 1 38 152 48 163 3.08e-24 96.7
Msa0539030 MtrunA17_Chr7g0218601 38.462 143 85 2 20 159 15 157 3.12e-24 98.2
Msa0539030 MtrunA17_Chr4g0011901 37.405 131 77 2 23 152 19 145 3.21e-24 98.2
Msa0539030 MtrunA17_Chr5g0431501 43.103 116 65 1 38 152 34 149 3.70e-24 98.2
Msa0539030 MtrunA17_Chr5g0431461 43.103 116 65 1 38 152 34 149 3.70e-24 98.2
Msa0539030 MtrunA17_Chr4g0052861 34.247 146 90 2 9 152 6 147 5.33e-24 97.8
Msa0539030 MtrunA17_Chr5g0395331 39.370 127 76 1 22 148 23 148 5.33e-24 97.8
Msa0539030 MtrunA17_Chr4g0052851 38.971 136 77 3 16 150 17 147 7.78e-24 97.1
Msa0539030 MtrunA17_Chr1g0164211 39.516 124 70 1 24 147 23 141 1.35e-23 96.7
Msa0539030 MtrunA17_Chr6g0451681 31.515 165 109 2 9 169 31 195 1.48e-23 96.3
Msa0539030 MtrunA17_Chr4g0057001 37.121 132 80 1 17 148 33 161 1.55e-23 96.3
Msa0539030 MtrunA17_Chr7g0246221 35.385 130 84 0 19 148 16 145 2.35e-23 95.9
Msa0539030 MtrunA17_Chr6g0451691 33.129 163 105 3 11 169 13 175 2.54e-23 95.9
Msa0539030 MtrunA17_Chr4g0046631 37.143 140 85 2 36 172 44 183 2.59e-23 95.9
Msa0539030 MtrunA17_Chr5g0401681 33.793 145 93 1 11 152 3 147 2.65e-23 95.9
Msa0539030 MtrunA17_Chr2g0304871 36.129 155 89 3 10 158 12 162 2.93e-23 95.5
Msa0539030 MtrunA17_Chr4g0017411 38.514 148 85 3 21 166 18 161 6.76e-23 94.4
Msa0539030 MtrunA17_Chr7g0235551 31.646 158 106 2 12 167 7 164 6.81e-23 94.7
Msa0539030 MtrunA17_Chr7g0258211 36.667 150 92 2 2 149 3 151 7.64e-23 94.4
Msa0539030 MtrunA17_Chr1g0205371 32.450 151 99 1 2 152 3 150 1.52e-22 93.6
Msa0539030 MtrunA17_Chr4g0046691 36.585 123 76 1 38 158 40 162 2.08e-22 91.3
Msa0539030 MtrunA17_Chr4g0046671 36.090 133 83 1 38 168 45 177 2.22e-22 91.7
Msa0539030 MtrunA17_Chr6g0451751 32.544 169 110 2 4 168 6 174 4.08e-22 92.4
Msa0539030 MtrunA17_Chr4g0039901 39.024 123 75 0 26 148 24 146 4.74e-22 92.0
Msa0539030 MtrunA17_Chr3g0101741 46.914 81 43 0 72 152 1 81 4.85e-22 91.7
Msa0539030 MtrunA17_Chr7g0255531 34.228 149 90 2 6 152 1 143 5.88e-22 92.0
Msa0539030 MtrunA17_Chr5g0431511 41.379 116 67 1 38 152 34 149 9.69e-22 91.3
Msa0539030 MtrunA17_Chr4g0076181 52.632 76 36 0 72 147 1 76 1.07e-21 86.3
Msa0539030 MtrunA17_Chr1g0213671 38.983 118 69 3 38 152 35 152 1.43e-21 90.9
Msa0539030 MtrunA17_Chr8g0339311 39.344 122 72 1 33 152 40 161 1.62e-21 90.9
Msa0539030 MtrunA17_Chr6g0451641 34.161 161 99 4 12 169 16 172 5.13e-21 89.4
Msa0539030 MtrunA17_Chr8g0339331 36.232 138 83 4 26 158 25 162 5.41e-21 89.4
Msa0539030 MtrunA17_Chr5g0431601 50.000 78 38 1 72 149 1 77 7.08e-21 82.0
Msa0539030 MtrunA17_Chr2g0296651 37.500 152 89 2 1 152 1 146 1.30e-20 88.2
Msa0539030 MtrunA17_Chr6g0451741 31.646 158 106 2 14 169 37 194 1.45e-20 88.2
Msa0539030 MtrunA17_Chr7g0246131 33.846 130 86 0 19 148 16 145 1.97e-20 87.4
Msa0539030 MtrunA17_Chr2g0314731 33.566 143 89 1 6 148 8 144 2.18e-20 87.4
Msa0539030 MtrunA17_Chr1g0176831 36.364 143 85 2 6 148 38 174 2.90e-20 87.0
Msa0539030 MtrunA17_Chr6g0458561 31.737 167 104 6 3 161 15 179 3.15e-20 87.0
Msa0539030 MtrunA17_Chr4g0030711 39.048 105 64 0 48 152 48 152 4.31e-20 86.7
Msa0539030 MtrunA17_Chr7g0224551 35.417 144 89 3 7 149 3 143 5.27e-20 86.3
Msa0539030 MtrunA17_Chr7g0218611 39.091 110 66 1 31 139 27 136 5.75e-20 86.3
Msa0539030 MtrunA17_Chr5g0445341 42.683 82 46 1 72 152 1 82 7.76e-20 79.3
Msa0539030 MtrunA17_Chr3g0082701 28.655 171 118 2 10 178 14 182 8.10e-20 85.9
Msa0539030 MtrunA17_Chr7g0224561 35.417 144 89 3 7 149 3 143 8.63e-20 85.9
Msa0539030 MtrunA17_Chr1g0207841 39.048 105 64 0 48 152 49 153 1.47e-19 85.1
Msa0539030 MtrunA17_Chr5g0445541 39.623 106 59 2 4 107 8 110 2.18e-19 79.7
Msa0539030 MtrunA17_Chr8g0362481 46.914 81 43 0 72 152 1 81 2.98e-19 84.0
Msa0539030 MtrunA17_Chr6g0466901 31.013 158 105 3 15 168 10 167 3.76e-19 84.0
Msa0539030 MtrunA17_Chr6g0466941 31.646 158 104 3 15 168 10 167 5.09e-19 83.6
Msa0539030 MtrunA17_Chr6g0451801 32.374 139 92 1 11 147 13 151 5.31e-19 82.4
Msa0539030 MtrunA17_Chr8g0351801 44.231 104 53 2 47 147 44 145 5.55e-19 83.6
Msa0539030 MtrunA17_Chr4g0053621 34.722 144 87 2 9 149 4 143 5.95e-19 83.2
Msa0539030 MtrunA17_Chr3g0107561 35.915 142 86 3 4 142 14 153 6.39e-19 82.4
Msa0539030 MtrunA17_Chr4g0030741 36.232 138 82 3 16 149 40 175 1.80e-18 81.3
Msa0539030 MtrunA17_Chr1g0207851 39.091 110 66 1 43 152 44 152 2.81e-18 80.9
Msa0539030 MtrunA17_Chr6g0451781 32.812 128 84 1 43 168 80 207 3.03e-18 81.3
Msa0539030 MtrunA17_Chr4g0052881 34.965 143 80 2 6 148 14 143 1.29e-17 79.3
Msa0539030 MtrunA17_Chr7g0246121 36.923 130 82 0 19 148 16 145 3.36e-16 75.5
Msa0539030 MtrunA17_Chr5g0432751 34.513 113 73 1 38 149 34 146 5.50e-16 74.7
Msa0539030 MtrunA17_Chr1g0197881 27.660 141 100 2 9 147 3 143 2.52e-15 72.8
Msa0539030 MtrunA17_Chr2g0296661 35.577 104 67 0 49 152 44 147 2.95e-15 72.8
Msa0539030 MtrunA17_Chr4g0056951 38.095 105 65 0 44 148 51 155 3.09e-15 72.8
Msa0539030 MtrunA17_Chr1g0197851 27.465 142 100 2 9 147 3 144 6.22e-15 71.6
Msa0539030 MtrunA17_Chr1g0197891 29.286 140 90 2 14 147 8 144 1.01e-14 71.2
Msa0539030 MtrunA17_Chr7g0246181 34.286 140 91 1 10 148 6 145 1.21e-14 70.9
Msa0539030 MtrunA17_Chr1g0210091 33.019 106 70 1 46 150 74 179 2.11e-14 70.1
Msa0539030 MtrunA17_Chr8g0370641 29.851 134 91 3 12 142 15 148 3.69e-14 69.7
Msa0539030 MtrunA17_Chr8g0346261 31.897 116 73 4 39 151 86 198 3.98e-14 69.3
Msa0539030 MtrunA17_Chr4g0039391 34.545 110 71 1 44 152 42 151 5.72e-14 68.9
Msa0539030 MtrunA17_Chr2g0280051 27.517 149 98 3 8 152 50 192 6.50e-14 68.2
Msa0539030 MtrunA17_Chr2g0280001 28.188 149 97 3 8 152 40 182 9.77e-14 66.6
Msa0539030 MtrunA17_Chr2g0280071 28.859 149 96 3 8 152 40 182 1.30e-13 68.2
Msa0539030 MtrunA17_Chr4g0074581 28.736 174 109 4 1 160 24 196 1.32e-13 67.8
Msa0539030 MtrunA17_Chr3g0105751 30.822 146 92 4 7 145 15 158 1.52e-13 67.8
Msa0539030 MtrunA17_Chr1g0198191 28.758 153 103 4 10 157 18 169 1.70e-13 67.8
Msa0539030 MtrunA17_Chr1g0197871 29.577 142 95 2 11 148 5 145 1.76e-13 67.4
Msa0539030 MtrunA17_Chr1g0176861 43.820 89 44 2 6 94 12 94 2.87e-13 62.8
Msa0539030 MtrunA17_Chr6g0458571 34.821 112 65 5 3 106 15 126 3.96e-13 63.2
Msa0539030 MtrunA17_Chr4g0046331 33.333 144 86 7 18 152 9 151 4.39e-13 66.6
Msa0539030 MtrunA17_Chr4g0046321 31.933 119 77 4 37 152 34 151 1.01e-12 65.5
Msa0539030 MtrunA17_Chr4g0046351 31.933 119 77 4 37 152 34 151 1.55e-12 64.7
Msa0539030 MtrunA17_Chr5g0413911 32.479 117 75 2 38 150 43 159 1.60e-12 64.7
Msa0539030 MtrunA17_Chr7g0246151 35.238 105 68 0 44 148 41 145 2.93e-12 63.9
Msa0539030 MtrunA17_Chr3g0107611 31.532 111 67 3 38 142 51 158 3.42e-12 63.9
Msa0539030 MtrunA17_Chr8g0370651 28.676 136 90 4 14 142 17 152 5.13e-12 63.2
Msa0539030 MtrunA17_Chr3g0107541 34.906 106 60 3 46 145 59 161 1.24e-11 62.4
Msa0539030 MtrunA17_Chr6g0484781 52.083 48 23 0 21 68 20 67 3.80e-11 56.2
Msa0539030 MtrunA17_Chr2g0314771 33.766 77 51 0 72 148 1 77 5.22e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0539030 AT5G42590.1 48.252 143 68 3 8 148 5 143 3.03e-38 137
Msa0539030 AT3G26300.1 44.218 147 81 1 12 158 7 152 3.10e-38 137
Msa0539030 AT3G26320.1 43.750 128 72 0 31 158 25 152 1.18e-35 130
Msa0539030 AT2G30770.1 52.174 115 55 0 38 152 34 148 2.55e-35 129
Msa0539030 AT3G48280.1 41.379 145 85 0 8 152 1 145 3.25e-35 129
Msa0539030 AT3G26310.1 42.466 146 80 2 14 158 9 151 4.12e-35 128
Msa0539030 AT1G11610.2 52.174 115 55 0 38 152 34 148 4.61e-35 128
Msa0539030 AT5G57260.1 44.715 123 68 0 36 158 29 151 4.95e-35 128
Msa0539030 AT3G26330.1 44.186 129 72 0 35 163 29 157 5.21e-35 128
Msa0539030 AT1G11610.1 52.174 115 55 0 38 152 34 148 5.43e-35 128
Msa0539030 AT5G07990.1 44.138 145 81 0 8 152 4 148 6.23e-35 128
Msa0539030 AT3G26290.1 43.511 131 74 0 28 158 22 152 1.40e-34 127
Msa0539030 AT3G26290.2 43.511 131 74 0 28 158 35 165 1.54e-34 127
Msa0539030 AT3G48320.1 44.138 145 78 1 11 152 3 147 1.87e-34 126
Msa0539030 AT2G30750.1 46.269 134 69 1 24 157 23 153 2.24e-34 126
Msa0539030 AT5G24960.2 47.826 115 60 0 38 152 34 148 8.70e-34 123
Msa0539030 AT3G48270.1 47.619 126 66 0 27 152 21 146 2.97e-33 123
Msa0539030 AT3G44250.1 50.000 112 56 0 38 149 29 140 3.04e-33 123
Msa0539030 AT5G24960.1 47.826 115 60 0 38 152 34 148 3.14e-33 123
Msa0539030 AT3G26170.1 40.000 150 90 0 10 159 3 152 4.64e-33 123
Msa0539030 AT3G48290.1 46.825 126 67 0 27 152 23 148 6.70e-33 122
Msa0539030 AT3G48290.2 46.825 126 67 0 27 152 23 148 8.02e-33 122
Msa0539030 AT5G24950.1 47.826 115 60 0 38 152 33 147 1.00e-32 122
Msa0539030 AT3G53280.1 49.107 112 57 0 38 149 29 140 1.85e-32 121
Msa0539030 AT3G26180.1 43.046 151 83 1 9 159 5 152 2.06e-32 121
Msa0539030 AT3G48310.1 47.200 125 66 0 28 152 23 147 2.20e-32 121
Msa0539030 AT3G26190.1 48.214 112 58 0 38 149 29 140 2.51e-32 121
Msa0539030 AT1G13080.1 43.871 155 84 2 6 159 1 153 2.55e-32 121
Msa0539030 AT1G13110.1 40.278 144 86 0 6 149 1 144 6.50e-32 120
Msa0539030 AT3G26280.1 45.926 135 68 1 15 149 15 144 7.64e-32 119
Msa0539030 AT3G26270.1 46.721 122 65 0 28 149 23 144 7.93e-32 119
Msa0539030 AT3G26280.2 45.926 135 68 1 15 149 32 161 7.95e-32 120
Msa0539030 AT3G26150.1 39.041 146 89 0 10 155 3 148 1.03e-31 119
Msa0539030 AT2G02580.1 42.553 141 80 1 12 152 7 146 1.40e-31 119
Msa0539030 AT3G26220.1 44.776 134 74 0 16 149 8 141 2.92e-31 118
Msa0539030 AT1G13090.1 48.214 112 58 0 38 149 29 140 5.52e-31 114
Msa0539030 AT3G53300.1 48.696 115 59 0 35 149 26 140 6.14e-31 117
Msa0539030 AT4G13310.2 41.481 135 77 1 24 158 21 153 2.11e-30 114
Msa0539030 AT4G13290.1 40.909 132 78 0 28 159 24 155 4.66e-30 114
Msa0539030 AT3G26200.1 50.000 112 56 0 38 149 29 140 5.72e-30 114
Msa0539030 AT4G13310.1 41.481 135 77 1 24 158 21 153 7.27e-30 114
Msa0539030 AT2G24180.1 42.308 130 71 1 28 157 31 156 1.02e-29 114
Msa0539030 AT1G13090.2 48.214 112 58 0 38 149 29 140 1.04e-29 114
Msa0539030 AT5G06900.1 34.416 154 95 1 5 158 8 155 1.12e-29 114
Msa0539030 AT5G25130.1 39.007 141 82 1 9 149 5 141 1.22e-29 113
Msa0539030 AT3G48300.1 44.800 125 69 0 39 163 31 155 8.28e-29 111
Msa0539030 AT3G48300.2 44.800 125 69 0 39 163 33 157 8.40e-29 111
Msa0539030 AT3G26160.1 38.571 140 86 0 10 149 3 142 2.59e-28 110
Msa0539030 AT3G52970.2 37.908 153 87 3 12 159 14 163 3.70e-28 109
Msa0539030 AT3G52970.1 37.908 153 87 3 12 159 14 163 4.09e-28 109
Msa0539030 AT4G20240.2 40.323 124 74 0 38 161 34 157 4.96e-28 108
Msa0539030 AT3G26210.1 45.139 144 78 1 6 149 1 143 5.61e-28 109
Msa0539030 AT4G20240.1 40.323 124 74 0 38 161 34 157 6.82e-28 108
Msa0539030 AT5G25140.1 39.716 141 81 1 9 149 5 141 1.27e-27 108
Msa0539030 AT5G25120.1 37.589 141 84 1 9 149 5 141 1.45e-27 107
Msa0539030 AT4G31500.1 41.985 131 73 2 23 152 17 145 3.44e-27 107
Msa0539030 AT5G04330.1 43.966 116 65 0 37 152 32 147 6.47e-27 106
Msa0539030 AT5G67310.1 38.255 149 85 4 6 152 16 159 1.64e-26 105
Msa0539030 AT3G26230.1 38.971 136 82 1 14 149 4 138 4.62e-26 103
Msa0539030 AT4G12300.1 36.601 153 88 2 1 149 7 154 1.27e-25 102
Msa0539030 AT2G45560.3 36.620 142 87 2 10 148 9 150 1.57e-25 98.6
Msa0539030 AT5G06905.1 36.029 136 86 1 18 152 11 146 5.38e-25 100
Msa0539030 AT3G26180.2 48.214 112 55 1 9 120 5 113 6.67e-25 99.4
Msa0539030 AT4G36220.1 43.119 109 62 0 44 152 47 155 7.27e-25 100
Msa0539030 AT2G45560.2 36.620 142 87 2 10 148 9 150 7.71e-25 98.6
Msa0539030 AT5G25180.1 37.600 125 78 0 28 152 20 144 1.21e-24 99.8
Msa0539030 AT2G45560.1 36.620 142 87 2 10 148 9 150 2.72e-24 99.0
Msa0539030 AT4G15360.1 39.860 143 80 3 9 147 11 151 2.91e-24 99.0
Msa0539030 AT4G12320.1 40.141 142 79 2 9 149 18 154 4.15e-24 98.6
Msa0539030 AT4G13770.1 36.691 139 87 1 15 152 8 146 4.93e-24 98.2
Msa0539030 AT3G26830.1 35.333 150 93 2 6 155 1 146 1.55e-23 96.7
Msa0539030 AT1G01280.1 42.308 104 60 0 46 149 41 144 4.98e-23 95.5
Msa0539030 AT5G10600.1 32.571 175 101 4 8 173 25 191 8.57e-23 94.7
Msa0539030 AT1G13100.1 44.340 106 56 1 47 152 38 140 1.73e-22 93.6
Msa0539030 AT4G15330.1 41.085 129 74 2 14 141 16 143 2.77e-22 93.2
Msa0539030 AT5G10610.1 33.784 148 90 2 9 155 11 151 4.05e-22 92.8
Msa0539030 AT4G37430.1 38.938 113 68 1 38 149 29 141 4.50e-22 92.8
Msa0539030 AT2G23190.1 35.714 154 92 3 8 158 50 199 5.85e-22 92.4
Msa0539030 AT2G42250.1 35.172 145 94 0 8 152 12 156 7.81e-22 92.0
Msa0539030 AT4G31970.1 35.928 167 100 3 8 170 5 168 8.68e-22 92.0
Msa0539030 AT2G25160.2 31.034 145 97 2 5 147 2 145 1.12e-21 91.3
Msa0539030 AT2G25160.1 31.034 145 97 2 5 147 2 145 1.31e-21 91.3
Msa0539030 AT4G20235.1 40.984 122 64 3 37 152 31 150 1.72e-21 89.7
Msa0539030 AT1G33720.1 34.839 155 82 4 4 148 5 150 2.40e-21 90.5
Msa0539030 AT3G20940.1 37.008 127 79 1 22 147 27 153 2.58e-21 90.5
Msa0539030 AT5G57220.1 32.374 139 89 2 15 152 12 146 2.68e-21 90.5
Msa0539030 AT4G37320.1 33.553 152 93 4 5 152 2 149 4.20e-21 89.7
Msa0539030 AT4G37330.1 36.552 145 84 4 8 149 7 146 8.02e-21 89.0
Msa0539030 AT4G37340.1 36.986 146 86 3 10 152 6 148 8.24e-21 89.0
Msa0539030 AT4G37360.1 38.255 149 84 4 8 152 4 148 9.61e-21 89.0
Msa0539030 AT3G20950.1 36.552 145 86 3 8 147 14 157 1.28e-20 88.6
Msa0539030 AT4G31940.1 34.731 167 102 3 8 170 5 168 1.94e-20 88.2
Msa0539030 AT3G32047.1 35.758 165 86 5 10 162 13 169 3.29e-20 87.4
Msa0539030 AT4G37410.1 36.429 140 77 6 15 149 12 144 3.55e-20 87.4
Msa0539030 AT3G20140.1 39.669 121 72 1 23 142 28 148 4.29e-20 87.0
Msa0539030 AT1G79370.1 31.875 160 95 4 1 154 9 160 1.07e-19 85.9
Msa0539030 AT5G36220.1 32.886 149 87 4 8 149 10 152 1.33e-19 85.5
Msa0539030 AT4G37400.1 32.576 132 87 2 46 175 40 171 2.62e-19 84.7
Msa0539030 AT2G40890.1 31.624 117 80 0 36 152 26 142 2.75e-19 84.7
Msa0539030 AT4G37310.1 32.727 165 102 5 6 167 5 163 7.75e-19 83.6
Msa0539030 AT2G14100.1 36.232 138 77 3 36 162 33 170 7.83e-19 83.6
Msa0539030 AT3G20090.2 36.184 152 96 1 8 158 14 165 8.19e-19 83.2
Msa0539030 AT3G25180.2 32.692 156 97 5 8 155 4 159 9.44e-19 82.8
Msa0539030 AT2G23220.1 38.710 124 73 2 38 158 47 170 1.29e-18 82.8
Msa0539030 AT2G45550.1 30.137 146 101 1 4 148 5 150 1.30e-18 82.8
Msa0539030 AT4G22690.1 35.577 104 66 1 46 148 93 196 1.91e-18 82.4
Msa0539030 AT3G25180.1 32.692 156 97 5 8 155 4 159 2.05e-18 82.0
Msa0539030 AT4G37370.1 34.014 147 89 4 10 152 6 148 2.41e-18 82.0
Msa0539030 AT1G58260.1 34.932 146 82 5 3 142 7 145 3.12e-18 81.6
Msa0539030 AT3G20130.1 37.500 112 69 1 48 158 53 164 5.98e-18 80.9
Msa0539030 AT2G05180.1 37.013 154 79 4 8 148 5 153 6.37e-18 80.5
Msa0539030 AT4G22710.1 34.615 104 67 1 46 148 62 165 1.30e-17 80.1
Msa0539030 AT3G20110.1 33.571 140 90 2 11 147 11 150 1.89e-17 79.3
Msa0539030 AT4G12310.1 36.066 122 78 0 44 165 51 172 3.60e-17 78.6
Msa0539030 AT5G44620.1 38.095 105 65 0 44 148 53 157 5.39e-17 78.2
Msa0539030 AT2G45570.1 34.247 146 88 3 6 148 10 150 6.63e-17 77.8
Msa0539030 AT1G74550.1 33.803 142 85 3 8 149 4 136 1.04e-16 77.4
Msa0539030 AT1G50520.1 34.706 170 104 3 8 170 10 179 1.11e-16 77.4
Msa0539030 AT2G45580.3 35.833 120 66 1 47 155 48 167 2.72e-16 75.9
Msa0539030 AT2G45580.1 35.833 120 66 1 47 155 48 167 2.95e-16 75.9
Msa0539030 AT3G10560.1 33.548 155 98 3 8 158 18 171 8.90e-16 74.7
Msa0539030 AT4G12330.1 35.238 105 68 0 44 148 53 157 4.27e-15 72.8
Msa0539030 AT3G53305.1 46.154 78 42 0 72 149 1 78 4.48e-15 72.0
Msa0539030 AT1G74540.1 34.058 138 83 4 14 149 5 136 4.50e-15 72.4
Msa0539030 AT3G28740.1 34.677 124 78 2 38 158 40 163 8.79e-15 71.6
Msa0539030 AT3G20100.1 34.694 147 84 4 8 147 11 152 9.89e-15 71.6
Msa0539030 AT1G28430.1 35.762 151 95 2 12 160 15 165 1.26e-14 71.2
Msa0539030 AT3G61040.2 31.624 117 80 0 36 152 32 148 1.63e-14 70.9
Msa0539030 AT3G61040.1 31.624 117 80 0 36 152 32 148 2.30e-14 70.5
Msa0539030 AT4G15350.1 37.500 104 59 3 48 147 45 146 4.08e-14 69.7
Msa0539030 AT5G35715.1 44.595 74 41 0 72 145 1 74 4.08e-14 69.7
Msa0539030 AT4G39950.1 31.724 145 91 4 4 145 28 167 5.69e-14 69.3
Msa0539030 AT4G39950.2 31.724 145 91 4 4 145 68 207 6.08e-14 69.3
Msa0539030 AT3G61880.1 32.143 112 70 4 39 147 68 176 9.16e-14 68.9
Msa0539030 AT1G11600.1 29.012 162 102 5 10 160 3 162 9.30e-14 68.9
Msa0539030 AT3G61880.2 32.143 112 70 4 39 147 68 176 9.52e-14 68.9
Msa0539030 AT3G20120.4 31.447 159 100 4 12 162 11 168 1.43e-13 68.2
Msa0539030 AT3G03470.1 35.294 119 72 2 38 151 32 150 1.50e-13 68.2
Msa0539030 AT5G42580.1 33.088 136 91 0 12 147 15 150 1.95e-13 67.8
Msa0539030 AT2G27000.1 34.783 115 70 3 51 162 54 166 2.55e-13 67.4
Msa0539030 AT5G04630.1 29.487 156 105 3 8 158 8 163 2.79e-13 67.4
Msa0539030 AT3G20960.2 37.209 86 54 0 62 147 67 152 3.54e-13 67.0
Msa0539030 AT2G46660.1 29.730 111 72 4 39 146 72 179 4.18e-13 67.0
Msa0539030 AT3G20080.2 38.739 111 67 1 38 147 43 153 3.10e-12 64.3
Msa0539030 AT3G20080.1 38.739 111 67 1 38 147 43 153 3.10e-12 64.3
Msa0539030 AT2G22330.1 29.252 147 99 4 4 145 23 169 3.14e-12 64.3
Msa0539030 AT2G22330.2 29.252 147 99 4 4 145 46 192 3.49e-12 64.3
Msa0539030 AT4G31950.1 31.737 167 95 5 8 170 5 156 4.52e-12 63.9
Msa0539030 AT1G13710.1 33.858 127 74 5 35 158 51 170 7.59e-12 63.2
Msa0539030 AT1G50560.1 39.560 91 47 3 48 132 54 142 8.53e-12 63.2
Msa0539030 AT2G30490.1 33.333 102 67 1 48 148 44 145 4.67e-11 60.8

Find 46 sgRNAs with CRISPR-Local

Find 59 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATGGGCGGCTTCAAGTTT+TGG 0.252115 4_1:-19113757 None:intergenic
GCCGCCCATTATATTTCTTA+TGG 0.269120 4_1:+19113769 Msa0539030:CDS
TAGAACCATAAGAAATATAA+TGG 0.294386 4_1:-19113774 None:intergenic
TTTGCGCCTGTTGTGAATTC+CGG 0.338725 4_1:+19113889 Msa0539030:CDS
TTCTTATGGTTCTAAAGGTC+TGG 0.368004 4_1:+19113783 Msa0539030:CDS
TATATTTCTTATGGTTCTAA+AGG 0.389126 4_1:+19113778 Msa0539030:CDS
CCTATCATGTTACTACGTTT+AGG 0.395862 4_1:+19113652 Msa0539030:CDS
TCGCTGAATACGGAGCATAT+TGG 0.433456 4_1:+19113809 Msa0539030:CDS
CCACACATCATAGTTTGTAT+TGG 0.438019 4_1:-19113926 None:intergenic
CTTGGAGTGCGCGGTGTGGG+AGG 0.438745 4_1:-19113609 None:intergenic
AGGCTTGGAGTGCGCGGTGT+GGG 0.447148 4_1:-19113612 None:intergenic
AGAAACAAGGGAAGTGATGA+AGG 0.462478 4_1:-19113451 None:intergenic
GAGGAAGAGACAATGATTGT+TGG 0.463070 4_1:-19113682 None:intergenic
CCTAAACGTAGTAACATGAT+AGG 0.463172 4_1:-19113652 None:intergenic
AGAACCATAAGAAATATAAT+GGG 0.465835 4_1:-19113773 None:intergenic
AGGAAGAGACAATGATTGTT+GGG 0.467212 4_1:-19113681 None:intergenic
TTGGAGTGCGCGGTGTGGGA+GGG 0.475749 4_1:-19113608 None:intergenic
TTGAGTCCGGAATTCACAAC+AGG 0.489070 4_1:-19113895 None:intergenic
GAGACACCCACCAGGTCCAC+GGG 0.490669 4_1:+19113549 Msa0539030:CDS
AAGGAATTGTTCAGCGGCTG+AGG 0.492310 4_1:-19113704 None:intergenic
CCACGGGGCTATCCAGTCAT+TGG 0.501309 4_1:+19113565 Msa0539030:CDS
ATTGGTAACCTCCACATGTT+GGG 0.515767 4_1:+19113583 Msa0539030:CDS
ATGTGGAGGTTACCAATGAC+TGG 0.536375 4_1:-19113577 None:intergenic
GAGTGTGAAAGTGAGAAACA+AGG 0.542496 4_1:-19113464 None:intergenic
GAATTGTTCAGCGGCTGAGG+AGG 0.557177 4_1:-19113701 None:intergenic
ATTGGTGTGAAATTTGAGTC+CGG 0.557241 4_1:-19113908 None:intergenic
GGAGACACCCACCAGGTCCA+CGG 0.557396 4_1:+19113548 Msa0539030:CDS
CATTGGTAACCTCCACATGT+TGG 0.560762 4_1:+19113582 Msa0539030:CDS
AAGGCTTGGAGTGCGCGGTG+TGG 0.562042 4_1:-19113613 None:intergenic
ACTGGATAGCCCCGTGGACC+TGG 0.564747 4_1:-19113559 None:intergenic
AGTGTGAAAGTGAGAAACAA+GGG 0.567290 4_1:-19113463 None:intergenic
ATGTGTGGAGCAAGTATCAA+TGG 0.587706 4_1:+19113941 Msa0539030:CDS
TGGACAAGGCTTGGAGTGCG+CGG 0.589981 4_1:-19113618 None:intergenic
GTGGGAGGGTACCCAACATG+TGG 0.595079 4_1:-19113594 None:intergenic
GGATAGCCCCGTGGACCTGG+TGG 0.605143 4_1:-19113556 None:intergenic
ACGGAGGAACAAGGTGATGA+CGG 0.616587 4_1:-19113500 None:intergenic
ACCATAAGAAATATAATGGG+CGG 0.617553 4_1:-19113770 None:intergenic
TTGTTTACGACGGAGGAACA+AGG 0.627386 4_1:-19113509 None:intergenic
CCAATACAAACTATGATGTG+TGG 0.630254 4_1:+19113926 Msa0539030:CDS
ATATTGGCGTAACATGAGGA+AGG 0.631784 4_1:+19113825 Msa0539030:CDS
GAGCATATTGGCGTAACATG+AGG 0.635624 4_1:+19113821 Msa0539030:CDS
GATAGCCCCGTGGACCTGGT+GGG 0.638517 4_1:-19113555 None:intergenic
GGAGGGTACCCAACATGTGG+AGG 0.658459 4_1:-19113591 None:intergenic
AATGATCGGAGACACCCACC+AGG 0.674600 4_1:+19113541 Msa0539030:CDS
CCAATGACTGGATAGCCCCG+TGG 0.735835 4_1:-19113565 None:intergenic
AGACACCCACCAGGTCCACG+GGG 0.737960 4_1:+19113550 Msa0539030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAACCTAAAAATAATGAT+CGG + chr4_1:19113527-19113546 Msa0539030:CDS 20.0%
!! AGAACCATAAGAAATATAAT+GGG - chr4_1:19113776-19113795 None:intergenic 20.0%
!! TAGAACCATAAGAAATATAA+TGG - chr4_1:19113777-19113796 None:intergenic 20.0%
!!! TATATTTCTTATGGTTCTAA+AGG + chr4_1:19113778-19113797 Msa0539030:CDS 20.0%
!!! TATTTTTAGGTTGTTTACGA+CGG - chr4_1:19113522-19113541 None:intergenic 25.0%
!! TGTCTCCGATCATTATTTTT+AGG - chr4_1:19113535-19113554 None:intergenic 30.0%
!!! TGTTTTAAGGAATTGTTCAG+CGG - chr4_1:19113713-19113732 None:intergenic 30.0%
! ACCATAAGAAATATAATGGG+CGG - chr4_1:19113773-19113792 None:intergenic 30.0%
AGTGTGAAAGTGAGAAACAA+GGG - chr4_1:19113466-19113485 None:intergenic 35.0%
CCTAAACGTAGTAACATGAT+AGG - chr4_1:19113655-19113674 None:intergenic 35.0%
CCTATCATGTTACTACGTTT+AGG + chr4_1:19113652-19113671 Msa0539030:CDS 35.0%
AGGAAGAGACAATGATTGTT+GGG - chr4_1:19113684-19113703 None:intergenic 35.0%
!! TTCTTATGGTTCTAAAGGTC+TGG + chr4_1:19113783-19113802 Msa0539030:CDS 35.0%
ATTGGTGTGAAATTTGAGTC+CGG - chr4_1:19113911-19113930 None:intergenic 35.0%
! CCACACATCATAGTTTGTAT+TGG - chr4_1:19113929-19113948 None:intergenic 35.0%
CCAATACAAACTATGATGTG+TGG + chr4_1:19113926-19113945 Msa0539030:CDS 35.0%
AGAAACAAGGGAAGTGATGA+AGG - chr4_1:19113454-19113473 None:intergenic 40.0%
GAGTGTGAAAGTGAGAAACA+AGG - chr4_1:19113467-19113486 None:intergenic 40.0%
!!! TTTTAGGTTGTTTACGACGG+AGG - chr4_1:19113519-19113538 None:intergenic 40.0%
! ATTGGTAACCTCCACATGTT+GGG + chr4_1:19113583-19113602 Msa0539030:CDS 40.0%
! CAAGCCTTGTCCAAAAAACA+CGG + chr4_1:19113628-19113647 Msa0539030:CDS 40.0%
!!! CATGATAGGACCGTGTTTTT+TGG - chr4_1:19113641-19113660 None:intergenic 40.0%
GAGGAAGAGACAATGATTGT+TGG - chr4_1:19113685-19113704 None:intergenic 40.0%
! AAACGACGTCGTGTGTTTTA+AGG - chr4_1:19113726-19113745 None:intergenic 40.0%
GCCGCCCATTATATTTCTTA+TGG + chr4_1:19113769-19113788 Msa0539030:CDS 40.0%
ATATTGGCGTAACATGAGGA+AGG + chr4_1:19113825-19113844 Msa0539030:CDS 40.0%
ATGTGTGGAGCAAGTATCAA+TGG + chr4_1:19113941-19113960 Msa0539030:CDS 40.0%
TTGTTTACGACGGAGGAACA+AGG - chr4_1:19113512-19113531 None:intergenic 45.0%
ATGTGGAGGTTACCAATGAC+TGG - chr4_1:19113580-19113599 None:intergenic 45.0%
! CATTGGTAACCTCCACATGT+TGG + chr4_1:19113582-19113601 Msa0539030:CDS 45.0%
!!! CGTGTTTTTTGGACAAGGCT+TGG - chr4_1:19113630-19113649 None:intergenic 45.0%
!!! AGGACCGTGTTTTTTGGACA+AGG - chr4_1:19113635-19113654 None:intergenic 45.0%
!! TAATGGGCGGCTTCAAGTTT+TGG - chr4_1:19113760-19113779 None:intergenic 45.0%
!!! GGTCTGGTTTTCGCTGAATA+CGG + chr4_1:19113799-19113818 Msa0539030:CDS 45.0%
TCGCTGAATACGGAGCATAT+TGG + chr4_1:19113809-19113828 Msa0539030:CDS 45.0%
GAGCATATTGGCGTAACATG+AGG + chr4_1:19113821-19113840 Msa0539030:CDS 45.0%
TTTGCGCCTGTTGTGAATTC+CGG + chr4_1:19113889-19113908 Msa0539030:CDS 45.0%
TTGAGTCCGGAATTCACAAC+AGG - chr4_1:19113898-19113917 None:intergenic 45.0%
ACGGAGGAACAAGGTGATGA+CGG - chr4_1:19113503-19113522 None:intergenic 50.0%
AAGGAATTGTTCAGCGGCTG+AGG - chr4_1:19113707-19113726 None:intergenic 50.0%
AATGATCGGAGACACCCACC+AGG + chr4_1:19113541-19113560 Msa0539030:CDS 55.0%
GAATTGTTCAGCGGCTGAGG+AGG - chr4_1:19113704-19113723 None:intergenic 55.0%
!!! GGCGGCTTCAAGTTTTGGAC+GGG - chr4_1:19113755-19113774 None:intergenic 55.0%
!!! GGGCGGCTTCAAGTTTTGGA+CGG - chr4_1:19113756-19113775 None:intergenic 55.0%
CCAATGACTGGATAGCCCCG+TGG - chr4_1:19113568-19113587 None:intergenic 60.0%
CCACGGGGCTATCCAGTCAT+TGG + chr4_1:19113565-19113584 Msa0539030:CDS 60.0%
!! GGAGGGTACCCAACATGTGG+AGG - chr4_1:19113594-19113613 None:intergenic 60.0%
!! GTGGGAGGGTACCCAACATG+TGG - chr4_1:19113597-19113616 None:intergenic 60.0%
TGGACAAGGCTTGGAGTGCG+CGG - chr4_1:19113621-19113640 None:intergenic 60.0%
GGAGACACCCACCAGGTCCA+CGG + chr4_1:19113548-19113567 Msa0539030:CDS 65.0%
GAGACACCCACCAGGTCCAC+GGG + chr4_1:19113549-19113568 Msa0539030:CDS 65.0%
AGACACCCACCAGGTCCACG+GGG + chr4_1:19113550-19113569 Msa0539030:CDS 65.0%
GATAGCCCCGTGGACCTGGT+GGG - chr4_1:19113558-19113577 None:intergenic 65.0%
ACTGGATAGCCCCGTGGACC+TGG - chr4_1:19113562-19113581 None:intergenic 65.0%
TTGGAGTGCGCGGTGTGGGA+GGG - chr4_1:19113611-19113630 None:intergenic 65.0%
AGGCTTGGAGTGCGCGGTGT+GGG - chr4_1:19113615-19113634 None:intergenic 65.0%
AAGGCTTGGAGTGCGCGGTG+TGG - chr4_1:19113616-19113635 None:intergenic 65.0%
GGATAGCCCCGTGGACCTGG+TGG - chr4_1:19113559-19113578 None:intergenic 70.0%
CTTGGAGTGCGCGGTGTGGG+AGG - chr4_1:19113612-19113631 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 19113445 19113984 19113445 ID=Msa0539030;Name=Msa0539030
chr4_1 mRNA 19113445 19113984 19113445 ID=Msa0539030-mRNA-1;Parent=Msa0539030;Name=Msa0539030-mRNA-1;_AED=0.47;_eAED=0.47;_QI=0|-1|0|1|-1|1|1|0|179
chr4_1 exon 19113445 19113984 19113445 ID=Msa0539030-mRNA-1:exon:5584;Parent=Msa0539030-mRNA-1
chr4_1 CDS 19113445 19113984 19113445 ID=Msa0539030-mRNA-1:cds;Parent=Msa0539030-mRNA-1
Gene Sequence

>Msa0539030

ATGTTTCCTTCATCACTTCCCTTGTTTCTCACTTTCACACTCATCTTCATTCTCTCCGTCATCACCTTGTTCCTCCGTCGTAAACAACCTAAAAATAATGATCGGAGACACCCACCAGGTCCACGGGGCTATCCAGTCATTGGTAACCTCCACATGTTGGGTACCCTCCCACACCGCGCACTCCAAGCCTTGTCCAAAAAACACGGTCCTATCATGTTACTACGTTTAGGACAAGTCCCAACAATCATTGTCTCTTCCTCCTCAGCCGCTGAACAATTCCTTAAAACACACGACGTCGTTTTCTCTTCCCGTCCAAAACTTGAAGCCGCCCATTATATTTCTTATGGTTCTAAAGGTCTGGTTTTCGCTGAATACGGAGCATATTGGCGTAACATGAGGAAGGTTTGTACTCTGCAGCTTTTGAGTGCTTCTAAAGTTGAATCGTTTGCGCCTGTTGTGAATTCCGGACTCAAATTTCACACCAATACAAACTATGATGTGTGGAGCAAGTATCAATGGCAACCAACAACCAAAAATTAA
Protein sequence

>Msa0539030

MFPSSLPLFLTFTLIFILSVITLFLRRKQPKNNDRRHPPGPRGYPVIGNLHMLGTLPHRALQALSKKHGPIMLLRLGQVPTIIVSSSSAAEQFLKTHDVVFSSRPKLEAAHYISYGSKGLVFAEYGAYWRNMRKVCTLQLLSASKVESFAPVVNSGLKFHTNTNYDVWSKYQWQPTTKN*