AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1151070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1151070 MtrunA17_Chr7g0240991 98.418 569 9 0 4 572 3 571 0.0 1162
Msa1151070 MtrunA17_Chr7g0240971 64.471 577 193 5 1 572 1 570 0.0 736
Msa1151070 MtrunA17_Chr4g0008521 56.316 570 235 9 10 572 10 572 0.0 657
Msa1151070 MtrunA17_Chr5g0437681 46.140 570 282 9 14 572 12 567 0.0 535
Msa1151070 MtrunA17_Chr5g0431581 45.993 574 287 9 5 572 4 560 0.0 532
Msa1151070 MtrunA17_Chr3g0114211 46.853 572 272 12 14 572 18 570 0.0 526
Msa1151070 MtrunA17_Chr7g0238941 45.326 567 292 9 14 572 22 578 3.96e-176 510
Msa1151070 MtrunA17_Chr5g0404361 46.018 565 280 12 12 572 68 611 8.28e-175 508
Msa1151070 MtrunA17_Chr7g0238351 44.214 579 300 10 8 572 12 581 6.48e-172 499
Msa1151070 MtrunA17_Chr7g0237491 44.728 588 292 13 6 572 5 580 7.79e-172 499
Msa1151070 MtrunA17_Chr7g0237441 43.972 564 297 8 19 572 26 580 1.53e-171 498
Msa1151070 MtrunA17_Chr5g0429511 44.251 574 299 9 1 572 4 558 2.01e-171 497
Msa1151070 MtrunA17_Chr4g0005921 45.688 545 279 8 30 572 28 557 1.08e-169 493
Msa1151070 MtrunA17_Chr4g0031901 45.009 551 288 8 13 558 31 571 3.52e-168 490
Msa1151070 MtrunA17_Chr5g0404341 45.035 564 286 11 14 572 22 566 6.30e-168 489
Msa1151070 MtrunA17_Chr7g0238981 43.470 559 298 8 23 572 44 593 6.16e-166 484
Msa1151070 MtrunA17_Chr3g0104061 44.404 545 283 10 30 572 30 556 3.60e-165 481
Msa1151070 MtrunA17_Chr2g0278811 43.419 585 288 9 21 572 33 607 1.75e-164 481
Msa1151070 MtrunA17_Chr5g0436461 44.894 568 287 12 11 572 7 554 5.47e-162 473
Msa1151070 MtrunA17_Chr8g0346581 41.409 582 316 10 1 572 5 571 1.74e-152 449
Msa1151070 MtrunA17_Chr3g0133861 44.118 340 169 11 230 562 5 330 3.41e-81 258
Msa1151070 MtrunA17_Chr8g0382691 29.749 558 317 17 41 563 49 566 1.48e-65 224
Msa1151070 MtrunA17_Chr3g0133871 51.531 196 92 3 12 204 17 212 3.01e-61 202
Msa1151070 MtrunA17_Chr3g0118321 29.655 580 343 19 1 550 1 545 2.60e-60 209
Msa1151070 MtrunA17_Chr3g0118331 27.194 581 352 18 1 550 4 544 1.01e-49 181
Msa1151070 MtrunA17_Chr5g0436431 39.419 241 130 6 290 530 4 228 1.67e-45 160
Msa1151070 MtrunA17_Chr1g0157341 29.622 503 301 20 40 537 43 497 3.28e-41 156
Msa1151070 MtrunA17_Chr3g0143671 29.249 506 299 20 40 537 44 498 3.53e-41 156
Msa1151070 MtrunA17_Chr8g0374261 27.223 551 328 19 12 545 10 504 1.81e-40 154
Msa1151070 MtrunA17_Chr4g0024861 26.962 497 312 16 40 532 41 490 5.51e-39 150
Msa1151070 MtrunA17_Chr8g0374271 26.346 520 333 14 29 545 34 506 1.11e-38 149
Msa1151070 MtrunA17_Chr4g0056511 28.796 573 358 20 12 572 15 549 1.37e-37 147
Msa1151070 MtrunA17_Chr4g0038671 28.169 497 305 19 40 532 44 492 2.50e-37 145
Msa1151070 MtrunA17_Chr2g0322441 26.877 506 301 16 40 532 44 493 2.87e-35 139
Msa1151070 MtrunA17_Chr3g0079321 26.876 573 369 18 13 572 16 551 4.92e-35 139
Msa1151070 MtrunA17_Chr3g0121171 27.052 536 335 17 29 554 1179 1668 5.30e-34 138
Msa1151070 MtrunA17_Chr3g0121171 27.052 536 335 18 29 554 29 518 2.34e-33 136
Msa1151070 MtrunA17_Chr3g0121171 26.679 536 337 17 29 554 604 1093 7.24e-33 135
Msa1151070 MtrunA17_Chr3g0121171 26.294 483 300 17 82 554 1798 2234 3.12e-29 124
Msa1151070 MtrunA17_Chr4g0043261 27.057 547 340 19 11 545 5 504 8.22e-34 135
Msa1151070 MtrunA17_Chr3g0121161 26.866 536 336 17 29 554 69 558 9.38e-34 135
Msa1151070 MtrunA17_Chr3g0121151 26.679 536 337 17 29 554 69 558 6.40e-33 133
Msa1151070 MtrunA17_Chr5g0402831 25.720 521 318 16 29 538 34 496 1.19e-32 132
Msa1151070 MtrunA17_Chr4g0043251 26.902 539 315 23 44 562 45 524 4.23e-32 130
Msa1151070 MtrunA17_Chr4g0075071 26.523 509 299 19 40 532 45 494 2.64e-31 128
Msa1151070 MtrunA17_Chr7g0234061 28.463 527 325 18 32 546 35 521 3.42e-31 128
Msa1151070 MtrunA17_Chr4g0024641 25.721 451 283 18 86 532 11 413 2.66e-25 111
Msa1151070 MtrunA17_Chr3g0118351 28.614 339 191 14 236 550 5 316 2.14e-24 104
Msa1151070 MtrunA17_Chr3g0118341 34.270 178 107 8 1 172 1 174 1.48e-21 93.2
Msa1151070 MtrunA17_Chr1g0197301 26.053 380 212 13 211 572 1 329 1.21e-20 93.2
Msa1151070 MtrunA17_Chr1g0197311 25.000 240 140 7 13 215 7 243 3.45e-16 78.6
Msa1151070 MtrunA17_Chr7g0268321 78.571 42 9 0 116 157 1 42 5.79e-16 72.4
Msa1151070 MtrunA17_Chr4g0075781 32.847 137 78 4 150 283 24 149 7.51e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1151070 AT5G01050.1 53.968 567 243 7 12 572 14 568 0.0 622
Msa1151070 AT5G01040.1 53.014 564 251 5 12 572 14 566 0.0 621
Msa1151070 AT3G09220.1 54.446 551 234 9 11 555 11 550 0.0 606
Msa1151070 AT2G40370.1 44.027 586 303 9 2 572 5 580 0.0 528
Msa1151070 AT2G30210.1 46.127 568 276 11 18 572 20 570 0.0 524
Msa1151070 AT5G05390.1 45.855 567 287 9 12 572 13 565 1.16e-180 521
Msa1151070 AT2G29130.1 44.655 580 296 11 9 572 3 573 5.22e-175 507
Msa1151070 AT5G07130.1 44.655 580 293 13 8 572 3 569 1.82e-174 506
Msa1151070 AT3G09220.2 54.644 463 193 9 99 555 2 453 8.14e-174 500
Msa1151070 AT5G60020.1 43.952 587 304 11 1 572 1 577 1.41e-170 496
Msa1151070 AT5G03260.1 46.570 554 275 12 22 572 22 557 2.92e-170 494
Msa1151070 AT5G60020.3 45.389 553 278 10 35 572 2 545 2.14e-169 492
Msa1151070 AT2G38080.1 43.761 569 297 12 10 572 7 558 4.82e-167 486
Msa1151070 AT5G58910.2 45.149 536 281 8 39 572 43 567 3.45e-166 484
Msa1151070 AT5G58910.3 45.149 536 281 8 39 572 42 566 4.68e-166 484
Msa1151070 AT5G09360.1 42.933 566 301 10 12 572 21 569 3.37e-165 482
Msa1151070 AT1G18140.1 44.991 569 286 13 21 572 23 581 2.83e-164 480
Msa1151070 AT5G01190.1 44.425 574 297 8 1 572 5 558 2.67e-163 477
Msa1151070 AT5G58910.1 44.590 536 277 9 39 572 6 523 6.98e-161 469
Msa1151070 AT5G01190.2 45.369 529 272 7 46 572 31 544 1.26e-156 459
Msa1151070 AT2G46570.1 43.964 555 292 9 23 572 29 569 1.74e-155 457
Msa1151070 AT5G48100.1 44.383 543 279 12 29 562 25 553 2.59e-152 449
Msa1151070 AT5G60020.2 42.936 545 286 11 1 530 1 535 9.80e-150 442
Msa1151070 AT5G07130.2 44.467 497 251 12 88 572 1 484 4.93e-145 427
Msa1151070 AT5G07130.3 44.467 497 251 12 88 572 1 484 4.93e-145 427
Msa1151070 AT2G46570.2 43.636 495 260 9 83 572 4 484 6.71e-134 399
Msa1151070 AT4G39830.1 28.856 603 338 20 13 572 23 577 1.69e-64 221
Msa1151070 AT5G21105.1 30.118 591 340 20 10 563 20 574 5.03e-64 220
Msa1151070 AT5G21100.1 29.255 564 326 19 21 551 19 542 9.97e-63 216
Msa1151070 AT5G21105.3 29.730 555 320 19 10 530 20 538 9.00e-56 197
Msa1151070 AT4G39830.2 28.868 530 287 19 85 572 1 482 4.65e-49 177
Msa1151070 AT4G39830.3 28.872 523 282 19 92 572 6 480 1.88e-47 173
Msa1151070 AT4G39830.4 28.355 529 278 18 85 572 1 469 4.75e-46 169
Msa1151070 AT1G41830.1 28.814 531 319 19 16 537 16 496 2.24e-42 160
Msa1151070 AT1G76160.1 27.758 562 348 19 9 562 6 517 1.50e-41 157
Msa1151070 AT4G37160.1 27.422 547 348 15 29 572 34 534 8.33e-41 155
Msa1151070 AT5G66920.1 27.387 555 336 18 29 572 40 538 4.04e-40 154
Msa1151070 AT1G21850.1 28.125 544 307 19 37 562 40 517 1.73e-39 152
Msa1151070 AT5G51480.1 27.273 583 352 18 14 572 16 550 3.03e-39 152
Msa1151070 AT5G48450.2 27.379 515 322 18 40 546 43 513 4.47e-39 151
Msa1151070 AT5G48450.1 27.379 515 322 18 40 546 43 513 1.00e-38 150
Msa1151070 AT1G21860.1 26.731 520 314 20 37 545 40 503 1.15e-38 149
Msa1151070 AT2G23630.1 27.057 547 349 17 29 572 33 532 2.55e-38 148
Msa1151070 AT2G23630.2 27.057 547 349 17 29 572 38 537 2.69e-38 148
Msa1151070 AT1G75790.1 27.258 598 341 25 1 572 12 541 3.89e-37 145
Msa1151070 AT4G12420.1 27.103 535 346 17 30 554 29 529 5.31e-37 145
Msa1151070 AT4G12420.2 27.103 535 346 17 30 554 29 529 5.31e-37 145
Msa1151070 AT4G22010.1 26.740 546 332 17 40 572 40 530 2.42e-36 143
Msa1151070 AT4G25240.2 27.461 579 361 18 11 572 14 550 3.27e-36 143
Msa1151070 AT4G25240.1 27.461 579 361 18 11 572 14 550 3.27e-36 143
Msa1151070 AT5G21105.2 30.769 364 212 12 209 563 51 383 4.92e-34 134
Msa1151070 AT1G55570.1 27.606 518 308 18 44 545 47 513 1.81e-33 134
Msa1151070 AT4G37160.2 28.246 439 270 13 29 464 34 430 1.71e-32 130
Msa1151070 AT4G28090.1 25.595 504 309 18 47 537 49 499 1.74e-32 132
Msa1151070 AT3G13390.1 25.954 524 325 16 36 545 38 512 4.56e-31 127
Msa1151070 AT4G38420.1 25.502 498 324 16 44 536 48 503 1.57e-30 126
Msa1151070 AT3G13400.2 27.071 495 313 17 44 532 45 497 1.53e-28 120
Msa1151070 AT3G13400.1 27.071 495 313 17 44 532 45 497 1.53e-28 120
Msa1151070 AT1G55560.1 25.852 499 314 19 44 532 44 496 2.17e-27 116
Msa1151070 AT4G38420.3 25.105 478 311 16 44 516 48 483 9.20e-27 114
Msa1151070 AT4G38420.2 29.365 252 164 6 44 291 48 289 2.20e-24 106

Find 125 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGTGATTGTTACAGTTAA+TGG 0.188106 7_4:+35136538 Msa1151070:CDS
TCACTTCAAGATGAAGATTT+TGG 0.229808 7_4:+35135703 Msa1151070:exon
TCTTGAAGTGACCAACTTAT+AGG 0.235581 7_4:-35135691 None:intergenic
TACCAATCACCTAGTATTAT+TGG 0.245668 7_4:-35137449 None:intergenic
TACAGTTGAACGCACTTTCT+TGG 0.249775 7_4:+35135784 Msa1151070:CDS
TGATTTGCCTAAATGTTAAT+TGG 0.249889 7_4:+35138900 Msa1151070:exon
CGATAAACTCAAGTATAATT+TGG 0.260597 7_4:+35138560 Msa1151070:CDS
TCAATCATAGCATGTATATA+TGG 0.266850 7_4:-35139072 None:intergenic
CCTGTACACTTAGCATTTAC+AGG 0.283680 7_4:-35138183 None:intergenic
GGACATTGTGTTATATATTC+AGG 0.298929 7_4:-35137260 None:intergenic
TTCACTATCAACGGCTTTCC+TGG 0.299902 7_4:+35137539 Msa1151070:CDS
ACAGCATTCATAGTTGAAAA+TGG 0.311293 7_4:+35138841 Msa1151070:CDS
GACGATTATATCGGTGGTAT+AGG 0.322464 7_4:-35137824 None:intergenic
TGCTTCACCTTAGTCGATTT+CGG 0.324244 7_4:-35138402 None:intergenic
TATTATTGGTACTTCCTTGT+AGG 0.335846 7_4:-35137435 None:intergenic
AGTGGGACAGGGACCCAATT+AGG 0.336834 7_4:-35138108 None:intergenic
TATATAGCCAATTAACATTT+AGG 0.338710 7_4:-35138907 None:intergenic
TTGCTGTGCCGGTGGGAGGA+TGG 0.341412 7_4:+35138607 Msa1151070:CDS
CCAGTGAATTGTTATATTGT+AGG 0.350520 7_4:-35136632 None:intergenic
CAAATTATACTTGAGTTTAT+CGG 0.350950 7_4:-35138559 None:intergenic
CATTATCATTCAACCTCGTT+CGG 0.355902 7_4:+35137391 Msa1151070:CDS
CTGTAACAATCACTTGTTCA+TGG 0.365502 7_4:-35136531 None:intergenic
TGCTGTGCCGGTGGGAGGAT+GGG 0.368851 7_4:+35138608 Msa1151070:CDS
CCATCCCTGACTTCCAGCTT+TGG 0.378346 7_4:-35136574 None:intergenic
TTCGGTGTAAATGTAACATT+AGG 0.379226 7_4:-35138384 None:intergenic
ATTATTGGTACTTCCTTGTA+GGG 0.379979 7_4:-35137434 None:intergenic
ATGTGGATGATCATAATCTA+TGG 0.380123 7_4:+35138809 Msa1151070:CDS
TCCTTGTAGGGCTTAGGAAA+TGG 0.399142 7_4:-35137422 None:intergenic
CAGGTCCAAAGCTGGAAGTC+AGG 0.405362 7_4:+35136569 Msa1151070:CDS
TTCTTATTTGTCCTATAAGT+TGG 0.410734 7_4:+35135680 Msa1151070:five_prime_UTR
CGAACGAGGTTGAATGATAA+TGG 0.418168 7_4:-35137390 None:intergenic
TCGCAACACGGTTGCTGTGC+CGG 0.420527 7_4:+35138596 Msa1151070:CDS
ACGATTATATCGGTGGTATA+GGG 0.426862 7_4:-35137823 None:intergenic
CTGACTTCCAGCTTTGGACC+TGG 0.430307 7_4:-35136568 None:intergenic
CACAACAAGAAGGAACATTA+TGG 0.433064 7_4:+35137324 Msa1151070:CDS
CAGTGAATTGTTATATTGTA+GGG 0.446742 7_4:-35136631 None:intergenic
GGTACTTCCTTGTAGGGCTT+AGG 0.446960 7_4:-35137428 None:intergenic
AGTCATCCCATGCATCTTCA+TGG 0.452974 7_4:+35138486 Msa1151070:CDS
CTCGGTGTATGCGGCATCCA+TGG 0.454245 7_4:-35137800 None:intergenic
ATACTAGGTGATTGGTATGA+TGG 0.461264 7_4:+35137455 Msa1151070:CDS
GCCATGTAGTATGAACCTTT+TGG 0.463483 7_4:-35137892 None:intergenic
ACATACCAGGATTGTCAGTT+CGG 0.465483 7_4:-35138644 None:intergenic
CAATCATAGCATGTATATAT+GGG 0.468397 7_4:-35139071 None:intergenic
GCAACCGTGTTGCGAATTGA+AGG 0.469608 7_4:-35138588 None:intergenic
GCAACATAACTGGTCTTGTA+GGG 0.469945 7_4:+35138082 Msa1151070:CDS
TACTTGAGTTTATCGGTAGT+AGG 0.471637 7_4:-35138552 None:intergenic
TACCAATAATACTAGGTGAT+TGG 0.472302 7_4:+35137447 Msa1151070:CDS
GCTGCATCACCTTATGTTGT+TGG 0.473113 7_4:+35137913 Msa1151070:CDS
CCAACACCTTCAACTTCACT+TGG 0.476302 7_4:+35138865 Msa1151070:CDS
GTTGACCATTCGGAACAAAT+AGG 0.478262 7_4:-35137719 None:intergenic
AAAGACGACGGCACGAGTTG+TGG 0.481369 7_4:-35137962 None:intergenic
TGACTTCCAGCTTTGGACCT+GGG 0.483976 7_4:-35136567 None:intergenic
GTCTGCTGTGAAAAGTATAT+CGG 0.485158 7_4:-35137866 None:intergenic
CTGACCATGCACTATATAGC+TGG 0.487286 7_4:-35137232 None:intergenic
TGCTGCAATGACGATTATAT+CGG 0.491384 7_4:-35137833 None:intergenic
TGGAAAAGGATATTCCATAA+TGG 0.491498 7_4:+35138263 Msa1151070:CDS
ATTTACACCGAAATCGACTA+AGG 0.491745 7_4:+35138395 Msa1151070:CDS
CCTGTAAATGCTAAGTGTAC+AGG 0.492619 7_4:+35138183 Msa1151070:CDS
AGCAACATAACTGGTCTTGT+AGG 0.494287 7_4:+35138081 Msa1151070:CDS
GATATAATCGTCATTGCAGC+AGG 0.499394 7_4:+35137835 Msa1151070:CDS
CACTTAGCATTTACAGGACA+AGG 0.505158 7_4:-35138177 None:intergenic
CATGTATATCACAATTAACA+TGG 0.511581 7_4:+35138146 Msa1151070:CDS
ACTGGTTCACCAACAACATA+AGG 0.513560 7_4:-35137922 None:intergenic
TCATCCACTTCAAGTGGGAC+AGG 0.515815 7_4:-35138120 None:intergenic
TGTGGATGATCATAATCTAT+GGG 0.516377 7_4:+35138810 Msa1151070:CDS
GAACAATTGAAGAGATCGCC+AGG 0.518140 7_4:-35137557 None:intergenic
ATTATCATTCAACCTCGTTC+GGG 0.518373 7_4:+35137392 Msa1151070:CDS
TTCACAGCAGACCAACCAAA+AGG 0.519262 7_4:+35137877 Msa1151070:CDS
GTTGTACGTGCAACAGTTCA+CGG 0.522175 7_4:+35137365 Msa1151070:CDS
CAACACGGTTGCTGTGCCGG+TGG 0.525329 7_4:+35138599 Msa1151070:CDS
TCCATTTCCTAAGCCCTACA+AGG 0.531828 7_4:+35137421 Msa1151070:CDS
ACTTTACCCAGGTCCAAAGC+TGG 0.536979 7_4:+35136561 Msa1151070:CDS
TTCATACCATGAAGATGCAT+GGG 0.538306 7_4:-35138492 None:intergenic
ATTCATACCATGAAGATGCA+TGG 0.538422 7_4:-35138493 None:intergenic
TGAAAAGTATATCGGCACTT+TGG 0.539755 7_4:-35137858 None:intergenic
AGTGGTAATGCTGGCATCAA+AGG 0.541191 7_4:-35138024 None:intergenic
CAAATTCACAGTTGTAGCCA+TGG 0.551620 7_4:+35137783 Msa1151070:CDS
CAAATACAATTCAACGGTGG+AGG 0.551874 7_4:+35138428 Msa1151070:CDS
TAACATTTAGGCAAATCAGC+AGG 0.558427 7_4:-35138895 None:intergenic
GAATTGTCGAAGAGTCCTAC+TGG 0.559246 7_4:-35137940 None:intergenic
AGATTCCGAACTGACAATCC+TGG 0.559455 7_4:+35138639 Msa1151070:CDS
TTAGGCAAATCAGCAGGTGG+TGG 0.560545 7_4:-35138889 None:intergenic
GGTCCCTGTCCCACTTGAAG+TGG 0.563821 7_4:+35138116 Msa1151070:CDS
AGGTCCAAAGCTGGAAGTCA+GGG 0.569821 7_4:+35136570 Msa1151070:CDS
TTGTTATGAAGTGGTAATGC+TGG 0.573382 7_4:-35138033 None:intergenic
AACACGGTTGCTGTGCCGGT+GGG 0.573459 7_4:+35138600 Msa1151070:CDS
CCTACAATATAACAATTCAC+TGG 0.574181 7_4:+35136632 Msa1151070:CDS
TATATCGGTGGTATAGGGCT+CGG 0.574475 7_4:-35137818 None:intergenic
AAAGACCTATTTGTTCCGAA+TGG 0.575759 7_4:+35137714 Msa1151070:CDS
AAGGAAGTACCAATAATACT+AGG 0.578287 7_4:+35137440 Msa1151070:CDS
TCTGATGCTTTCACTATCAA+CGG 0.586303 7_4:+35137530 Msa1151070:CDS
ACCAAAAGGTTCATACTACA+TGG 0.591334 7_4:+35137891 Msa1151070:CDS
ATGTGTTCATCCACTTCAAG+TGG 0.592927 7_4:-35138126 None:intergenic
GCTAAGTGTACAGGTCCACT+TGG 0.593627 7_4:+35138192 Msa1151070:CDS
ACGGTTGCTGTGCCGGTGGG+AGG 0.595198 7_4:+35138603 Msa1151070:CDS
CTATATAGTGCATGGTCAGA+CGG 0.595622 7_4:+35137236 Msa1151070:CDS
TTTAATGTGACACAACAAGA+AGG 0.597981 7_4:+35137314 Msa1151070:CDS
GAATCCTTCAATTCGCAACA+CGG 0.600436 7_4:+35138584 Msa1151070:CDS
ATAGCAGCCCATCCTCCCAC+CGG 0.601570 7_4:-35138615 None:intergenic
TTTGGTGTTATGGCAAACAT+GGG 0.609087 7_4:+35135721 Msa1151070:CDS
CATCCACTTCAAGTGGGACA+GGG 0.612302 7_4:-35138119 None:intergenic
GCAATTCAAATACAATTCAA+CGG 0.613563 7_4:+35138422 Msa1151070:CDS
CCAAGTGAAGTTGAAGGTGT+TGG 0.618280 7_4:-35138865 None:intergenic
TGCAATGACGATTATATCGG+TGG 0.620768 7_4:-35137830 None:intergenic
TATGTTGTTGGTGAACCAGT+AGG 0.621180 7_4:+35137925 Msa1151070:CDS
ATGTATATCACAATTAACAT+GGG 0.622921 7_4:+35138147 Msa1151070:CDS
AATGGAAATCGACCCGAACG+AGG 0.625609 7_4:-35137404 None:intergenic
ACAGTTAATGGACTTTACCC+AGG 0.628423 7_4:+35136550 Msa1151070:CDS
TGTTCCAGCTATATAGTGCA+TGG 0.629241 7_4:+35137228 Msa1151070:CDS
CAACATAACTGGTCTTGTAG+GGG 0.631983 7_4:+35138083 Msa1151070:CDS
ATTGGTGTATTGTTATGAAG+TGG 0.638592 7_4:-35138042 None:intergenic
GGTATAGGGCTCGGTGTATG+CGG 0.638721 7_4:-35137809 None:intergenic
TATAAGCTGAAAGTGAAGCA+AGG 0.638942 7_4:+35137691 Msa1151070:CDS
TTGATAGTGAAAGCATCAGA+TGG 0.646028 7_4:-35137527 None:intergenic
TACAACTGTGAATTTGTGAT+CGG 0.646281 7_4:-35137776 None:intergenic
CCAAAGCTGGAAGTCAGGGA+TGG 0.647318 7_4:+35136574 Msa1151070:CDS
AACATAACTGGTCTTGTAGG+GGG 0.647653 7_4:+35138084 Msa1151070:CDS
GGTGGACCAAGTGAAGTTGA+AGG 0.647739 7_4:-35138871 None:intergenic
CATTTAGGCAAATCAGCAGG+TGG 0.649176 7_4:-35138892 None:intergenic
TTGGTATGATGGAAATGTTG+AGG 0.683745 7_4:+35137466 Msa1151070:CDS
GTGGATGATCATAATCTATG+GGG 0.686953 7_4:+35138811 Msa1151070:CDS
AACAAGAAGGAACATTATGG+TGG 0.690252 7_4:+35137327 Msa1151070:CDS
TGTGTTCATCCACTTCAAGT+GGG 0.704295 7_4:-35138125 None:intergenic
GTAACCCTCGTAAAAGACGA+CGG 0.705472 7_4:-35137974 None:intergenic
ATTCAAATACAATTCAACGG+TGG 0.707341 7_4:+35138425 Msa1151070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAATTCATATATAATCT+TGG + chr7_4:35137077-35137096 Msa1151070:intron 10.0%
!!! TCTAATTTTATCTTCATTTA+TGG + chr7_4:35135751-35135770 Msa1151070:CDS 15.0%
!! AACAATGTATAATATATGTA+AGG - chr7_4:35136114-35136133 None:intergenic 15.0%
!!! TAATTCTTTTAGAAGAATTT+GGG - chr7_4:35136212-35136231 None:intergenic 15.0%
!!! ATAATTCTTTTAGAAGAATT+TGG - chr7_4:35136213-35136232 None:intergenic 15.0%
!!! GATTTTACTATATTTTCTTT+TGG + chr7_4:35136377-35136396 Msa1151070:intron 15.0%
!!! TTGTATGTAAATTTATTTTC+AGG - chr7_4:35137293-35137312 None:intergenic 15.0%
!!! AATTTCTTGATTGTTTATTT+TGG + chr7_4:35138762-35138781 Msa1151070:intron 15.0%
!! TATAATATATGTAAGGTATG+CGG - chr7_4:35136107-35136126 None:intergenic 20.0%
!!! TCTTCTAAAAGAATTATCAA+AGG + chr7_4:35136216-35136235 Msa1151070:intron 20.0%
!! GAAAATATAGTAAAATCCTT+GGG - chr7_4:35136374-35136393 None:intergenic 20.0%
!! AGAAAATATAGTAAAATCCT+TGG - chr7_4:35136375-35136394 None:intergenic 20.0%
!!! TGTCTTCTAATGTTTTTTTT+TGG + chr7_4:35136416-35136435 Msa1151070:intron 20.0%
!!! GACTAATTAAATTCACTTTT+TGG - chr7_4:35136947-35136966 None:intergenic 20.0%
!!! TGAATTTTTGAACTATGTAT+AGG + chr7_4:35137198-35137217 Msa1151070:intron 20.0%
!! ATTTACACTAAATTAGAGAA+GGG - chr7_4:35137607-35137626 None:intergenic 20.0%
!! AATTTACACTAAATTAGAGA+AGG - chr7_4:35137608-35137627 None:intergenic 20.0%
!! ATGTATATCACAATTAACAT+GGG + chr7_4:35138147-35138166 Msa1151070:CDS 20.0%
!!! TTAGGATCCAAAAATATTTT+CGG - chr7_4:35138369-35138388 None:intergenic 20.0%
!! CAAATTATACTTGAGTTTAT+CGG - chr7_4:35138562-35138581 None:intergenic 20.0%
!! ATAAAATACTTATACATACC+AGG - chr7_4:35138660-35138679 None:intergenic 20.0%
!! TATATAGCCAATTAACATTT+AGG - chr7_4:35138910-35138929 None:intergenic 20.0%
!! TTCTTATTTGTCCTATAAGT+TGG + chr7_4:35135680-35135699 Msa1151070:five_prime_UTR 25.0%
!! CTATCACATAAATTTTTGCA+AGG + chr7_4:35135943-35135962 Msa1151070:intron 25.0%
!!! TGACTATGACTTTTTTTTGA+CGG + chr7_4:35136069-35136088 Msa1151070:intron 25.0%
! ATTATCAAAGGTCTAAAGAA+AGG + chr7_4:35136228-35136247 Msa1151070:intron 25.0%
! CATTAGAAGACAATTTCAAT+GGG - chr7_4:35136408-35136427 None:intergenic 25.0%
! ACATTAGAAGACAATTTCAA+TGG - chr7_4:35136409-35136428 None:intergenic 25.0%
! CAGTGAATTGTTATATTGTA+GGG - chr7_4:35136634-35136653 None:intergenic 25.0%
!! TTTTTGATCAAGTAGTATAG+TGG + chr7_4:35136822-35136841 Msa1151070:intron 25.0%
!!! ATTATTTCTCTGCTTTTTGA+TGG - chr7_4:35137064-35137083 None:intergenic 25.0%
!!! AATTTATTTTCAGGACGAAT+TGG - chr7_4:35137284-35137303 None:intergenic 25.0%
!!! AAATTTTTCAGCAACATAAC+TGG + chr7_4:35138072-35138091 Msa1151070:CDS 25.0%
! CATGTATATCACAATTAACA+TGG + chr7_4:35138146-35138165 Msa1151070:CDS 25.0%
! GTAAAAATATGCTTCCATTA+TGG - chr7_4:35138280-35138299 None:intergenic 25.0%
!! TTTACGAAGTCGAAAAATTT+TGG - chr7_4:35138345-35138364 None:intergenic 25.0%
!! TAGGATCCAAAAATATTTTC+GGG - chr7_4:35138368-35138387 None:intergenic 25.0%
! GCAATTCAAATACAATTCAA+CGG + chr7_4:35138422-35138441 Msa1151070:CDS 25.0%
!! TGGTATGAATTTTCATGTTT+TGG + chr7_4:35138506-35138525 Msa1151070:CDS 25.0%
! CGATAAACTCAAGTATAATT+TGG + chr7_4:35138560-35138579 Msa1151070:CDS 25.0%
!! TGATTTGCCTAAATGTTAAT+TGG + chr7_4:35138900-35138919 Msa1151070:exon 25.0%
! TCAAAAGAAAAATGTGAAAG+AGG - chr7_4:35138973-35138992 None:intergenic 25.0%
!! CAAGCAATAAGTACAATTTT+CGG + chr7_4:35139024-35139043 Msa1151070:three_prime_UTR 25.0%
! CAATCATAGCATGTATATAT+GGG - chr7_4:35139074-35139093 None:intergenic 25.0%
! TCAATCATAGCATGTATATA+TGG - chr7_4:35139075-35139094 None:intergenic 25.0%
! TCACTTCAAGATGAAGATTT+TGG + chr7_4:35135703-35135722 Msa1151070:exon 30.0%
!!! AGATGAAGATTTTGGTGTTA+TGG + chr7_4:35135711-35135730 Msa1151070:exon 30.0%
! CACATAAATTTTTGCAAGGT+CGG + chr7_4:35135947-35135966 Msa1151070:intron 30.0%
TCAAATGAACTATGCTCATA+AGG + chr7_4:35136138-35136157 Msa1151070:intron 30.0%
! TTTCTTCTTTTTCTTTCTGC+TGG + chr7_4:35136279-35136298 Msa1151070:intron 30.0%
! TTCTTCTTTTTCTTTCTGCT+GGG + chr7_4:35136280-35136299 Msa1151070:intron 30.0%
ATTGAAATTGAATGAGTTGC+AGG + chr7_4:35136480-35136499 Msa1151070:intron 30.0%
CAAGTGATTGTTACAGTTAA+TGG + chr7_4:35136538-35136557 Msa1151070:CDS 30.0%
CCAGTGAATTGTTATATTGT+AGG - chr7_4:35136635-35136654 None:intergenic 30.0%
CCTACAATATAACAATTCAC+TGG + chr7_4:35136632-35136651 Msa1151070:CDS 30.0%
GCAAAAAAAATGCCTTCAAT+TGG - chr7_4:35136715-35136734 None:intergenic 30.0%
!!! GGCATTTTTTTTGCCAATTT+TGG + chr7_4:35136721-35136740 Msa1151070:intron 30.0%
ATCACATTATATGCAAGAGT+CGG - chr7_4:35136878-35136897 None:intergenic 30.0%
! ACATCTTGTGCTTCAATTTT+TGG - chr7_4:35136976-35136995 None:intergenic 30.0%
! TCTCTTAGGATTATTAGTCT+TGG - chr7_4:35137001-35137020 None:intergenic 30.0%
ATGTATGAGTTCTTTCTCTT+AGG - chr7_4:35137015-35137034 None:intergenic 30.0%
! TTTTGAACTATGTATAGGCA+TGG + chr7_4:35137203-35137222 Msa1151070:intron 30.0%
GGACATTGTGTTATATATTC+AGG - chr7_4:35137263-35137282 None:intergenic 30.0%
TTTAATGTGACACAACAAGA+AGG + chr7_4:35137314-35137333 Msa1151070:CDS 30.0%
ATTATTGGTACTTCCTTGTA+GGG - chr7_4:35137437-35137456 None:intergenic 30.0%
TATTATTGGTACTTCCTTGT+AGG - chr7_4:35137438-35137457 None:intergenic 30.0%
!! AAGGAAGTACCAATAATACT+AGG + chr7_4:35137440-35137459 Msa1151070:CDS 30.0%
TACCAATAATACTAGGTGAT+TGG + chr7_4:35137447-35137466 Msa1151070:CDS 30.0%
TACCAATCACCTAGTATTAT+TGG - chr7_4:35137452-35137471 None:intergenic 30.0%
TACAACTGTGAATTTGTGAT+CGG - chr7_4:35137779-35137798 None:intergenic 30.0%
ATTGGTGTATTGTTATGAAG+TGG - chr7_4:35138045-35138064 None:intergenic 30.0%
CTGAAAAATTTGTGAGCTAT+TGG - chr7_4:35138063-35138082 None:intergenic 30.0%
TGGAAAAGGATATTCCATAA+TGG + chr7_4:35138263-35138282 Msa1151070:CDS 30.0%
!! GCATATTTTTACAATGTGAG+TGG + chr7_4:35138288-35138307 Msa1151070:CDS 30.0%
!! AAAAATTTTGGAGGGTTATC+TGG - chr7_4:35138333-35138352 None:intergenic 30.0%
! CGTAAACCCGAAAATATTTT+TGG + chr7_4:35138359-35138378 Msa1151070:CDS 30.0%
! TTCGGTGTAAATGTAACATT+AGG - chr7_4:35138387-35138406 None:intergenic 30.0%
ATTCAAATACAATTCAACGG+TGG + chr7_4:35138425-35138444 Msa1151070:CDS 30.0%
!!! TCTTGATTGTTTATTTTGGC+AGG + chr7_4:35138766-35138785 Msa1151070:intron 30.0%
!!! CTTGATTGTTTATTTTGGCA+GGG + chr7_4:35138767-35138786 Msa1151070:intron 30.0%
!!! TTGATTGTTTATTTTGGCAG+GGG + chr7_4:35138768-35138787 Msa1151070:intron 30.0%
ATGTGGATGATCATAATCTA+TGG + chr7_4:35138809-35138828 Msa1151070:CDS 30.0%
TGTGGATGATCATAATCTAT+GGG + chr7_4:35138810-35138829 Msa1151070:CDS 30.0%
ACAGCATTCATAGTTGAAAA+TGG + chr7_4:35138841-35138860 Msa1151070:CDS 30.0%
TCTTGAAGTGACCAACTTAT+AGG - chr7_4:35135694-35135713 None:intergenic 35.0%
!!! TTTTGGTGTTATGGCAAACA+TGG + chr7_4:35135720-35135739 Msa1151070:CDS 35.0%
!! TTTGGTGTTATGGCAAACAT+GGG + chr7_4:35135721-35135740 Msa1151070:CDS 35.0%
CAATTCTTCACTTAGCTTAC+CGG + chr7_4:35135886-35135905 Msa1151070:intron 35.0%
ATGATTGCAATCAGTTACTC+CGG - chr7_4:35135908-35135927 None:intergenic 35.0%
CTGATTGCAATCATTTCTCA+CGG + chr7_4:35135914-35135933 Msa1151070:intron 35.0%
!!! TATGACTTTTTTTTGACGGC+CGG + chr7_4:35136073-35136092 Msa1151070:intron 35.0%
! TCTTCTTTTTCTTTCTGCTG+GGG + chr7_4:35136281-35136300 Msa1151070:intron 35.0%
AAAATCCTTGGGTTAAGTGA+GGG - chr7_4:35136363-35136382 None:intergenic 35.0%
TAAAATCCTTGGGTTAAGTG+AGG - chr7_4:35136364-35136383 None:intergenic 35.0%
CTGTAACAATCACTTGTTCA+TGG - chr7_4:35136534-35136553 None:intergenic 35.0%
TCAAACCTTTCACCAATTGA+AGG + chr7_4:35136700-35136719 Msa1151070:intron 35.0%
AAATGCCTTCAATTGGTGAA+AGG - chr7_4:35136708-35136727 None:intergenic 35.0%
TTTGATCCATGAGATGTTTG+AGG + chr7_4:35136781-35136800 Msa1151070:intron 35.0%
TCACATTATATGCAAGAGTC+GGG - chr7_4:35136877-35136896 None:intergenic 35.0%
TTTGTTTCGTACATCTCAGT+TGG - chr7_4:35136908-35136927 None:intergenic 35.0%
!!! ATTTCTCTGCTTTTTGATGG+TGG - chr7_4:35137061-35137080 None:intergenic 35.0%
CACAACAAGAAGGAACATTA+TGG + chr7_4:35137324-35137343 Msa1151070:CDS 35.0%
AACAAGAAGGAACATTATGG+TGG + chr7_4:35137327-35137346 Msa1151070:CDS 35.0%
CATTATCATTCAACCTCGTT+CGG + chr7_4:35137391-35137410 Msa1151070:CDS 35.0%
ATTATCATTCAACCTCGTTC+GGG + chr7_4:35137392-35137411 Msa1151070:CDS 35.0%
ATACTAGGTGATTGGTATGA+TGG + chr7_4:35137455-35137474 Msa1151070:CDS 35.0%
! TTGGTATGATGGAAATGTTG+AGG + chr7_4:35137466-35137485 Msa1151070:CDS 35.0%
ATCCAAAAAGAACTCGAAAC+AGG + chr7_4:35137494-35137513 Msa1151070:CDS 35.0%
!! TTGATAGTGAAAGCATCAGA+TGG - chr7_4:35137530-35137549 None:intergenic 35.0%
TCTGATGCTTTCACTATCAA+CGG + chr7_4:35137530-35137549 Msa1151070:CDS 35.0%
TAAATTAGAGAAGGGCGAAA+TGG - chr7_4:35137599-35137618 None:intergenic 35.0%
TATAAGCTGAAAGTGAAGCA+AGG + chr7_4:35137691-35137710 Msa1151070:CDS 35.0%
AAAGACCTATTTGTTCCGAA+TGG + chr7_4:35137714-35137733 Msa1151070:CDS 35.0%
ACGATTATATCGGTGGTATA+GGG - chr7_4:35137826-35137845 None:intergenic 35.0%
TGCTGCAATGACGATTATAT+CGG - chr7_4:35137836-35137855 None:intergenic 35.0%
! TGAAAAGTATATCGGCACTT+TGG - chr7_4:35137861-35137880 None:intergenic 35.0%
! GTCTGCTGTGAAAAGTATAT+CGG - chr7_4:35137869-35137888 None:intergenic 35.0%
! TGTAGTATGAACCTTTTGGT+TGG - chr7_4:35137891-35137910 None:intergenic 35.0%
ACCAAAAGGTTCATACTACA+TGG + chr7_4:35137891-35137910 Msa1151070:CDS 35.0%
! TTGTTATGAAGTGGTAATGC+TGG - chr7_4:35138036-35138055 None:intergenic 35.0%
! GATGCAAATTTTTGTCCAAG+TGG - chr7_4:35138210-35138229 None:intergenic 35.0%
! TTTTTGCTTCCTGTTGGAAA+AGG + chr7_4:35138249-35138268 Msa1151070:CDS 35.0%
! ATGGAATATCCTTTTCCAAC+AGG - chr7_4:35138261-35138280 None:intergenic 35.0%
! CGAAGTCGAAAAATTTTGGA+GGG - chr7_4:35138341-35138360 None:intergenic 35.0%
! ACGAAGTCGAAAAATTTTGG+AGG - chr7_4:35138342-35138361 None:intergenic 35.0%
ATTTACACCGAAATCGACTA+AGG + chr7_4:35138395-35138414 Msa1151070:CDS 35.0%
TTCATACCATGAAGATGCAT+GGG - chr7_4:35138495-35138514 None:intergenic 35.0%
ATTCATACCATGAAGATGCA+TGG - chr7_4:35138496-35138515 None:intergenic 35.0%
TACTTGAGTTTATCGGTAGT+AGG - chr7_4:35138555-35138574 None:intergenic 35.0%
! ATGGTTTTTGCATTGTCATG+TGG + chr7_4:35138792-35138811 Msa1151070:CDS 35.0%
GTGGATGATCATAATCTATG+GGG + chr7_4:35138811-35138830 Msa1151070:CDS 35.0%
TAACATTTAGGCAAATCAGC+AGG - chr7_4:35138898-35138917 None:intergenic 35.0%
TACAGTTGAACGCACTTTCT+TGG + chr7_4:35135784-35135803 Msa1151070:CDS 40.0%
!!! ATGACTTTTTTTTGACGGCC+GGG + chr7_4:35136074-35136093 Msa1151070:intron 40.0%
! CTTCTTTTTCTTTCTGCTGG+GGG + chr7_4:35136282-35136301 Msa1151070:intron 40.0%
AGAAACTGGAACTCACTACA+AGG + chr7_4:35136312-35136331 Msa1151070:intron 40.0%
TTGGGTTAAGTGAGGGAAAT+TGG - chr7_4:35136356-35136375 None:intergenic 40.0%
AATTTCCCTCACTTAACCCA+AGG + chr7_4:35136355-35136374 Msa1151070:intron 40.0%
!! ACAGTTAATGGACTTTACCC+AGG + chr7_4:35136550-35136569 Msa1151070:CDS 40.0%
GAGTTTCCTCAAACATCTCA+TGG - chr7_4:35136790-35136809 None:intergenic 40.0%
CACATTATATGCAAGAGTCG+GGG - chr7_4:35136876-35136895 None:intergenic 40.0%
TTTCGTACATCTCAGTTGGT+AGG - chr7_4:35136904-35136923 None:intergenic 40.0%
TGTTCCAGCTATATAGTGCA+TGG + chr7_4:35137228-35137247 Msa1151070:CDS 40.0%
CTATATAGTGCATGGTCAGA+CGG + chr7_4:35137236-35137255 Msa1151070:CDS 40.0%
CGAACGAGGTTGAATGATAA+TGG - chr7_4:35137393-35137412 None:intergenic 40.0%
GTTGACCATTCGGAACAAAT+AGG - chr7_4:35137722-35137741 None:intergenic 40.0%
CAAATTCACAGTTGTAGCCA+TGG + chr7_4:35137783-35137802 Msa1151070:CDS 40.0%
GACGATTATATCGGTGGTAT+AGG - chr7_4:35137827-35137846 None:intergenic 40.0%
TGCAATGACGATTATATCGG+TGG - chr7_4:35137833-35137852 None:intergenic 40.0%
GATATAATCGTCATTGCAGC+AGG + chr7_4:35137835-35137854 Msa1151070:CDS 40.0%
! GCCATGTAGTATGAACCTTT+TGG - chr7_4:35137895-35137914 None:intergenic 40.0%
! ACTGGTTCACCAACAACATA+AGG - chr7_4:35137925-35137944 None:intergenic 40.0%
! TATGTTGTTGGTGAACCAGT+AGG + chr7_4:35137925-35137944 Msa1151070:CDS 40.0%
!! AGCAACATAACTGGTCTTGT+AGG + chr7_4:35138081-35138100 Msa1151070:CDS 40.0%
!! GCAACATAACTGGTCTTGTA+GGG + chr7_4:35138082-35138101 Msa1151070:CDS 40.0%
!! CAACATAACTGGTCTTGTAG+GGG + chr7_4:35138083-35138102 Msa1151070:CDS 40.0%
!! AACATAACTGGTCTTGTAGG+GGG + chr7_4:35138084-35138103 Msa1151070:CDS 40.0%
TGTGTTCATCCACTTCAAGT+GGG - chr7_4:35138128-35138147 None:intergenic 40.0%
ATGTGTTCATCCACTTCAAG+TGG - chr7_4:35138129-35138148 None:intergenic 40.0%
CACTTAGCATTTACAGGACA+AGG - chr7_4:35138180-35138199 None:intergenic 40.0%
CCTGTACACTTAGCATTTAC+AGG - chr7_4:35138186-35138205 None:intergenic 40.0%
CCTGTAAATGCTAAGTGTAC+AGG + chr7_4:35138183-35138202 Msa1151070:CDS 40.0%
!!! GAGTCATTTTTGCTTCCTGT+TGG + chr7_4:35138243-35138262 Msa1151070:CDS 40.0%
! TGCTTCACCTTAGTCGATTT+CGG - chr7_4:35138405-35138424 None:intergenic 40.0%
CAAATACAATTCAACGGTGG+AGG + chr7_4:35138428-35138447 Msa1151070:CDS 40.0%
!!! CATGTTTTGGCTCAAGACTT+CGG + chr7_4:35138519-35138538 Msa1151070:CDS 40.0%
!!! ATGTTTTGGCTCAAGACTTC+GGG + chr7_4:35138520-35138539 Msa1151070:CDS 40.0%
GAATCCTTCAATTCGCAACA+CGG + chr7_4:35138584-35138603 Msa1151070:CDS 40.0%
ACATACCAGGATTGTCAGTT+CGG - chr7_4:35138647-35138666 None:intergenic 40.0%
!!! TGTTTATTTTGGCAGGGGTA+TGG + chr7_4:35138773-35138792 Msa1151070:intron 40.0%
! AAGTACAATTTTCGGTCACG+TGG + chr7_4:35139032-35139051 Msa1151070:three_prime_UTR 40.0%
!!! TGACTTTTTTTTGACGGCCG+GGG + chr7_4:35136075-35136094 Msa1151070:intron 45.0%
TACACATGACTTTGTCCGAG+TGG + chr7_4:35136167-35136186 Msa1151070:intron 45.0%
AACCTTGACCATGTACCACT+CGG - chr7_4:35136185-35136204 None:intergenic 45.0%
! TTTTTCTTTCTGCTGGGGGT+GGG + chr7_4:35136286-35136305 Msa1151070:intron 45.0%
CGACTGTGACGAACCAAAAT+TGG - chr7_4:35136737-35136756 None:intergenic 45.0%
AAGAGTCGGGGTTCAAACTT+AGG - chr7_4:35136864-35136883 None:intergenic 45.0%
CTGACCATGCACTATATAGC+TGG - chr7_4:35137235-35137254 None:intergenic 45.0%
GTTGTACGTGCAACAGTTCA+CGG + chr7_4:35137365-35137384 Msa1151070:CDS 45.0%
TCCATTTCCTAAGCCCTACA+AGG + chr7_4:35137421-35137440 Msa1151070:CDS 45.0%
TCCTTGTAGGGCTTAGGAAA+TGG - chr7_4:35137425-35137444 None:intergenic 45.0%
!!! CGCCTGTTTCGAGTTCTTTT+TGG - chr7_4:35137499-35137518 None:intergenic 45.0%
TTCACTATCAACGGCTTTCC+TGG + chr7_4:35137539-35137558 Msa1151070:CDS 45.0%
GAACAATTGAAGAGATCGCC+AGG - chr7_4:35137560-35137579 None:intergenic 45.0%
TATATCGGTGGTATAGGGCT+CGG - chr7_4:35137821-35137840 None:intergenic 45.0%
TTCACAGCAGACCAACCAAA+AGG + chr7_4:35137877-35137896 Msa1151070:CDS 45.0%
GCTGCATCACCTTATGTTGT+TGG + chr7_4:35137913-35137932 Msa1151070:CDS 45.0%
GAATTGTCGAAGAGTCCTAC+TGG - chr7_4:35137943-35137962 None:intergenic 45.0%
GTAACCCTCGTAAAAGACGA+CGG - chr7_4:35137977-35137996 None:intergenic 45.0%
! AGTGGTAATGCTGGCATCAA+AGG - chr7_4:35138027-35138046 None:intergenic 45.0%
TCTTGTAGGGGGTCCTAATT+GGG + chr7_4:35138095-35138114 Msa1151070:CDS 45.0%
AGTCATCCCATGCATCTTCA+TGG + chr7_4:35138486-35138505 Msa1151070:CDS 45.0%
AGATTCCGAACTGACAATCC+TGG + chr7_4:35138639-35138658 Msa1151070:CDS 45.0%
! CCAAGTGAAGTTGAAGGTGT+TGG - chr7_4:35138868-35138887 None:intergenic 45.0%
CCAACACCTTCAACTTCACT+TGG + chr7_4:35138865-35138884 Msa1151070:CDS 45.0%
CATTTAGGCAAATCAGCAGG+TGG - chr7_4:35138895-35138914 None:intergenic 45.0%
! ACAATTTTCGGTCACGTGGT+AGG + chr7_4:35139036-35139055 Msa1151070:three_prime_UTR 45.0%
!!! AATTTTTTTTTTTTTTTTTG+AGG + chr7_4:35137149-35137168 Msa1151070:intron 5.0%
!!! ATTTTTTTTTTTTTTTTTGA+GGG + chr7_4:35137150-35137169 Msa1151070:intron 5.0%
GACTTTGTCCGAGTGGTACA+TGG + chr7_4:35136174-35136193 Msa1151070:intron 50.0%
! CTTTTTCTTTCTGCTGGGGG+TGG + chr7_4:35136285-35136304 Msa1151070:intron 50.0%
ACTTTACCCAGGTCCAAAGC+TGG + chr7_4:35136561-35136580 Msa1151070:CDS 50.0%
!! TGACTTCCAGCTTTGGACCT+GGG - chr7_4:35136570-35136589 None:intergenic 50.0%
AGGTCCAAAGCTGGAAGTCA+GGG + chr7_4:35136570-35136589 Msa1151070:CDS 50.0%
AATGGAAATCGACCCGAACG+AGG - chr7_4:35137407-35137426 None:intergenic 50.0%
GGTACTTCCTTGTAGGGCTT+AGG - chr7_4:35137431-35137450 None:intergenic 50.0%
GTCTTGTAGGGGGTCCTAAT+TGG + chr7_4:35138094-35138113 Msa1151070:CDS 50.0%
CATCCACTTCAAGTGGGACA+GGG - chr7_4:35138122-35138141 None:intergenic 50.0%
TCATCCACTTCAAGTGGGAC+AGG - chr7_4:35138123-35138142 None:intergenic 50.0%
GCTAAGTGTACAGGTCCACT+TGG + chr7_4:35138192-35138211 Msa1151070:CDS 50.0%
GCAACCGTGTTGCGAATTGA+AGG - chr7_4:35138591-35138610 None:intergenic 50.0%
GGTGGACCAAGTGAAGTTGA+AGG - chr7_4:35138874-35138893 None:intergenic 50.0%
TTAGGCAAATCAGCAGGTGG+TGG - chr7_4:35138892-35138911 None:intergenic 50.0%
AAGGTATGCGGTTCGAACCC+CGG - chr7_4:35136095-35136114 None:intergenic 55.0%
GTCCGAGTGGTACATGGTCA+AGG + chr7_4:35136180-35136199 Msa1151070:intron 55.0%
!! CTGACTTCCAGCTTTGGACC+TGG - chr7_4:35136571-35136590 None:intergenic 55.0%
CAGGTCCAAAGCTGGAAGTC+AGG + chr7_4:35136569-35136588 Msa1151070:CDS 55.0%
CCATCCCTGACTTCCAGCTT+TGG - chr7_4:35136577-35136596 None:intergenic 55.0%
CCAAAGCTGGAAGTCAGGGA+TGG + chr7_4:35136574-35136593 Msa1151070:CDS 55.0%
!! CGAGTGCAGCGTTGACCATT+CGG - chr7_4:35137732-35137751 None:intergenic 55.0%
!! GGTATAGGGCTCGGTGTATG+CGG - chr7_4:35137812-35137831 None:intergenic 55.0%
AAAGACGACGGCACGAGTTG+TGG - chr7_4:35137965-35137984 None:intergenic 55.0%
! TCGTGCCGTCGTCTTTTACG+AGG + chr7_4:35137969-35137988 Msa1151070:CDS 55.0%
! CGTGCCGTCGTCTTTTACGA+GGG + chr7_4:35137970-35137989 Msa1151070:CDS 55.0%
AGTGGGACAGGGACCCAATT+AGG - chr7_4:35138111-35138130 None:intergenic 55.0%
! CTCGGTGTATGCGGCATCCA+TGG - chr7_4:35137803-35137822 None:intergenic 60.0%
GGTCCCTGTCCCACTTGAAG+TGG + chr7_4:35138116-35138135 Msa1151070:CDS 60.0%
TCGCAACACGGTTGCTGTGC+CGG + chr7_4:35138596-35138615 Msa1151070:CDS 60.0%
! AACACGGTTGCTGTGCCGGT+GGG + chr7_4:35138600-35138619 Msa1151070:CDS 60.0%
ATAGCAGCCCATCCTCCCAC+CGG - chr7_4:35138618-35138637 None:intergenic 60.0%
CTGGGGGTGGGTCGAGAAAC+TGG + chr7_4:35136298-35136317 Msa1151070:intron 65.0%
CAACACGGTTGCTGTGCCGG+TGG + chr7_4:35138599-35138618 Msa1151070:CDS 65.0%
! TTGCTGTGCCGGTGGGAGGA+TGG + chr7_4:35138607-35138626 Msa1151070:CDS 65.0%
! TGCTGTGCCGGTGGGAGGAT+GGG + chr7_4:35138608-35138627 Msa1151070:CDS 65.0%
! ACGGTTGCTGTGCCGGTGGG+AGG + chr7_4:35138603-35138622 Msa1151070:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 35135677 35139105 35135677 ID=Msa1151070;Name=Msa1151070
chr7_4 mRNA 35135677 35139105 35135677 ID=Msa1151070-mRNA-1;Parent=Msa1151070;Name=Msa1151070-mRNA-1;_AED=0.04;_eAED=0.04;_QI=36|1|0.8|1|1|1|5|187|572
chr7_4 exon 35135677 35135805 35135677 ID=Msa1151070-mRNA-1:exon:8289;Parent=Msa1151070-mRNA-1
chr7_4 exon 35136502 35136653 35136502 ID=Msa1151070-mRNA-1:exon:8290;Parent=Msa1151070-mRNA-1
chr7_4 exon 35137220 35137587 35137220 ID=Msa1151070-mRNA-1:exon:8291;Parent=Msa1151070-mRNA-1
chr7_4 exon 35137686 35138660 35137686 ID=Msa1151070-mRNA-1:exon:8292;Parent=Msa1151070-mRNA-1
chr7_4 exon 35138788 35139105 35138788 ID=Msa1151070-mRNA-1:exon:8293;Parent=Msa1151070-mRNA-1
chr7_4 five_prime_UTR 35135677 35135712 35135677 ID=Msa1151070-mRNA-1:five_prime_utr;Parent=Msa1151070-mRNA-1
chr7_4 CDS 35135713 35135805 35135713 ID=Msa1151070-mRNA-1:cds;Parent=Msa1151070-mRNA-1
chr7_4 CDS 35136502 35136653 35136502 ID=Msa1151070-mRNA-1:cds;Parent=Msa1151070-mRNA-1
chr7_4 CDS 35137220 35137587 35137220 ID=Msa1151070-mRNA-1:cds;Parent=Msa1151070-mRNA-1
chr7_4 CDS 35137686 35138660 35137686 ID=Msa1151070-mRNA-1:cds;Parent=Msa1151070-mRNA-1
chr7_4 CDS 35138788 35138918 35138788 ID=Msa1151070-mRNA-1:cds;Parent=Msa1151070-mRNA-1
chr7_4 three_prime_UTR 35138919 35139105 35138919 ID=Msa1151070-mRNA-1:three_prime_utr;Parent=Msa1151070-mRNA-1
Gene Sequence

>Msa1151070

ATGAAGATTTTGGTGTTATGGCAAACATGGGCTTTTGCTCTAATTTTATCTTCATTTATGGCTTCTGCTGCTACAGTTGAACGCACTTTCTTGGTTCAAAACAAGACTATCAAACGATTGTGCCATGAACAAGTGATTGTTACAGTTAATGGACTTTACCCAGGTCCAAAGCTGGAAGTCAGGGATGGTGACTCTGTAATTGTTCATGTAATCAACAATTCACCCTACAATATAACAATTCACTGGCATGGAGTGTTCCAGCTATATAGTGCATGGTCAGACGGTCCTGAATATATAACACAATGTCCAATTCGTCCTGAAAATAAATTTACATACAAATTTAATGTGACACAACAAGAAGGAACATTATGGTGGCATGCTCATGCATCAGTTGTACGTGCAACAGTTCACGGCGCCATTATCATTCAACCTCGTTCGGGTCGATTTCCATTTCCTAAGCCCTACAAGGAAGTACCAATAATACTAGGTGATTGGTATGATGGAAATGTTGAGGAGATTATCCAAAAAGAACTCGAAACAGGCGATAAAATACCATCTGATGCTTTCACTATCAACGGCTTTCCTGGCGATCTCTTCAATTGTTCAAAAAATCAGATGTATAAGCTGAAAGTGAAGCAAGGAAAGACCTATTTGTTCCGAATGGTCAACGCTGCACTCGCTAACAATCTTTTCTTCAAGATTGCCGATCACAAATTCACAGTTGTAGCCATGGATGCCGCATACACCGAGCCCTATACCACCGATATAATCGTCATTGCAGCAGGCCAAAGTGCCGATATACTTTTCACAGCAGACCAACCAAAAGGTTCATACTACATGGCTGCATCACCTTATGTTGTTGGTGAACCAGTAGGACTCTTCGACAATTCCACAACTCGTGCCGTCGTCTTTTACGAGGGTTACAAAAAATTAAAAACAAAACATATAGTACCTTTGATGCCAGCATTACCACTTCATAACAATACACCAATAGCTCACAAATTTTTCAGCAACATAACTGGTCTTGTAGGGGGTCCTAATTGGGTCCCTGTCCCACTTGAAGTGGATGAACACATGTATATCACAATTAACATGGGTTTAGTACCTTGTCCTGTAAATGCTAAGTGTACAGGTCCACTTGGACAAAAATTTGCATCTAGCATGAACAATGAGTCATTTTTGCTTCCTGTTGGAAAAGGATATTCCATAATGGAAGCATATTTTTACAATGTGAGTGGCATTTACACTACAGATTTTCCAGATAACCCTCCAAAATTTTTCGACTTCGTAAACCCGAAAATATTTTTGGATCCTAATGTTACATTTACACCGAAATCGACTAAGGTGAAGCAATTCAAATACAATTCAACGGTGGAGGTCGTGTTTCAAAATACAGCGATTTTGAATGCGCAAAGTCATCCCATGCATCTTCATGGTATGAATTTTCATGTTTTGGCTCAAGACTTCGGGATTTTCAATCCTACTACCGATAAACTCAAGTATAATTTGGTGAATCCTTCAATTCGCAACACGGTTGCTGTGCCGGTGGGAGGATGGGCTGCTATTAGATTCCGAACTGACAATCCTGGGGTATGGTTTTTGCATTGTCATGTGGATGATCATAATCTATGGGGACTAGTCACAGCATTCATAGTTGAAAATGGACCAACACCTTCAACTTCACTTGGTCCACCACCTGCTGATTTGCCTAAATGTTAA

Protein sequence

>Msa1151070

MKILVLWQTWAFALILSSFMASAATVERTFLVQNKTIKRLCHEQVIVTVNGLYPGPKLEVRDGDSVIVHVINNSPYNITIHWHGVFQLYSAWSDGPEYITQCPIRPENKFTYKFNVTQQEGTLWWHAHASVVRATVHGAIIIQPRSGRFPFPKPYKEVPIILGDWYDGNVEEIIQKELETGDKIPSDAFTINGFPGDLFNCSKNQMYKLKVKQGKTYLFRMVNAALANNLFFKIADHKFTVVAMDAAYTEPYTTDIIVIAAGQSADILFTADQPKGSYYMAASPYVVGEPVGLFDNSTTRAVVFYEGYKKLKTKHIVPLMPALPLHNNTPIAHKFFSNITGLVGGPNWVPVPLEVDEHMYITINMGLVPCPVNAKCTGPLGQKFASSMNNESFLLPVGKGYSIMEAYFYNVSGIYTTDFPDNPPKFFDFVNPKIFLDPNVTFTPKSTKVKQFKYNSTVEVVFQNTAILNAQSHPMHLHGMNFHVLAQDFGIFNPTTDKLKYNLVNPSIRNTVAVPVGGWAAIRFRTDNPGVWFLHCHVDDHNLWGLVTAFIVENGPTPSTSLGPPPADLPKC*