AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1023430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1023430 MtrunA17_Chr7g0240991 97.891 569 12 0 4 572 3 571 0.0 1159
Msa1023430 MtrunA17_Chr7g0240971 64.818 577 191 5 1 572 1 570 0.0 739
Msa1023430 MtrunA17_Chr4g0008521 55.613 579 243 9 1 572 1 572 0.0 659
Msa1023430 MtrunA17_Chr5g0431581 46.194 578 287 10 1 572 1 560 0.0 535
Msa1023430 MtrunA17_Chr5g0437681 46.140 570 282 9 14 572 12 567 0.0 534
Msa1023430 MtrunA17_Chr3g0114211 47.028 572 271 12 14 572 18 570 0.0 527
Msa1023430 MtrunA17_Chr7g0238941 45.679 567 290 9 14 572 22 578 8.19e-177 512
Msa1023430 MtrunA17_Chr5g0404361 46.007 576 285 12 1 572 58 611 2.45e-175 509
Msa1023430 MtrunA17_Chr5g0429511 44.425 574 298 9 1 572 4 558 3.80e-172 499
Msa1023430 MtrunA17_Chr7g0237441 43.471 582 309 10 1 572 9 580 4.43e-172 500
Msa1023430 MtrunA17_Chr7g0237491 44.834 571 290 10 16 572 21 580 6.69e-172 499
Msa1023430 MtrunA17_Chr7g0238351 44.696 575 295 10 12 572 16 581 8.78e-172 499
Msa1023430 MtrunA17_Chr4g0005921 44.677 573 297 10 4 572 1 557 7.23e-170 493
Msa1023430 MtrunA17_Chr4g0031901 45.372 551 286 8 13 558 31 571 1.05e-168 491
Msa1023430 MtrunA17_Chr5g0404341 45.035 564 286 11 14 572 22 566 1.08e-167 488
Msa1023430 MtrunA17_Chr7g0238981 43.470 559 298 8 23 572 44 593 1.00e-165 484
Msa1023430 MtrunA17_Chr3g0104061 44.587 545 282 10 30 572 30 556 4.33e-165 481
Msa1023430 MtrunA17_Chr2g0278811 43.419 585 288 9 21 572 33 607 1.81e-164 481
Msa1023430 MtrunA17_Chr5g0436461 44.718 568 288 12 11 572 7 554 1.99e-161 472
Msa1023430 MtrunA17_Chr8g0346581 41.581 582 315 10 1 572 5 571 1.15e-153 452
Msa1023430 MtrunA17_Chr3g0133861 44.412 340 168 11 230 562 5 330 2.02e-81 258
Msa1023430 MtrunA17_Chr8g0382691 29.749 558 317 17 41 563 49 566 1.24e-65 224
Msa1023430 MtrunA17_Chr3g0133871 50.485 206 99 3 2 204 7 212 1.26e-61 202
Msa1023430 MtrunA17_Chr3g0118321 29.655 580 343 19 1 550 1 545 1.34e-60 210
Msa1023430 MtrunA17_Chr3g0118331 27.194 581 352 18 1 550 4 544 4.79e-50 181
Msa1023430 MtrunA17_Chr5g0436431 39.004 241 131 6 290 530 4 228 5.08e-45 159
Msa1023430 MtrunA17_Chr1g0157341 29.821 503 300 20 40 537 43 497 1.22e-41 157
Msa1023430 MtrunA17_Chr3g0143671 29.051 506 300 20 40 537 44 498 5.32e-41 155
Msa1023430 MtrunA17_Chr8g0374261 27.405 551 327 19 12 545 10 504 9.71e-41 155
Msa1023430 MtrunA17_Chr4g0024861 27.565 497 309 17 40 532 41 490 2.36e-39 151
Msa1023430 MtrunA17_Chr8g0374271 26.346 520 333 14 29 545 34 506 9.20e-39 149
Msa1023430 MtrunA17_Chr4g0056511 29.088 581 363 20 4 572 6 549 1.15e-38 150
Msa1023430 MtrunA17_Chr4g0038671 27.968 497 306 19 40 532 44 492 2.53e-37 145
Msa1023430 MtrunA17_Chr2g0322441 27.075 506 300 16 40 532 44 493 1.89e-35 140
Msa1023430 MtrunA17_Chr3g0079321 26.876 573 369 18 13 572 16 551 2.84e-35 140
Msa1023430 MtrunA17_Chr3g0121171 26.571 557 353 17 8 554 1158 1668 2.46e-34 139
Msa1023430 MtrunA17_Chr3g0121171 27.239 536 334 18 29 554 29 518 1.36e-33 137
Msa1023430 MtrunA17_Chr3g0121171 26.212 557 355 17 8 554 583 1093 3.45e-33 135
Msa1023430 MtrunA17_Chr3g0121171 26.501 483 299 17 82 554 1798 2234 1.86e-29 124
Msa1023430 MtrunA17_Chr3g0121161 26.391 557 354 17 8 554 48 558 5.29e-34 136
Msa1023430 MtrunA17_Chr4g0043261 26.874 547 341 19 11 545 5 504 1.38e-33 134
Msa1023430 MtrunA17_Chr3g0121151 26.212 557 355 17 8 554 48 558 3.26e-33 134
Msa1023430 MtrunA17_Chr5g0402831 25.720 521 318 16 29 538 34 496 9.60e-33 132
Msa1023430 MtrunA17_Chr4g0043251 27.087 539 314 23 44 562 45 524 2.57e-32 130
Msa1023430 MtrunA17_Chr4g0075071 26.719 509 298 19 40 532 45 494 1.85e-31 128
Msa1023430 MtrunA17_Chr7g0234061 27.947 526 329 17 32 546 35 521 2.24e-31 128
Msa1023430 MtrunA17_Chr4g0024641 25.942 451 282 18 86 532 11 413 1.79e-25 111
Msa1023430 MtrunA17_Chr3g0118351 28.614 339 191 14 236 550 5 316 5.05e-24 103
Msa1023430 MtrunA17_Chr3g0118341 33.889 180 109 8 1 174 1 176 3.93e-22 95.1
Msa1023430 MtrunA17_Chr1g0197301 26.053 380 212 13 211 572 1 329 1.42e-20 93.2
Msa1023430 MtrunA17_Chr1g0197311 25.000 240 140 7 13 215 7 243 3.17e-16 78.6
Msa1023430 MtrunA17_Chr7g0268321 78.571 42 9 0 116 157 1 42 5.30e-16 72.4
Msa1023430 MtrunA17_Chr4g0075781 32.847 137 78 4 150 283 24 149 7.58e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1023430 AT5G01050.1 53.968 567 243 7 12 572 14 568 0.0 622
Msa1023430 AT5G01040.1 53.014 564 251 5 12 572 14 566 0.0 622
Msa1023430 AT3G09220.1 53.971 554 238 9 8 555 8 550 0.0 605
Msa1023430 AT2G40370.1 44.198 586 302 9 2 572 5 580 0.0 530
Msa1023430 AT2G30210.1 45.675 578 284 11 8 572 10 570 0.0 524
Msa1023430 AT5G05390.1 46.032 567 286 9 12 572 13 565 0.0 523
Msa1023430 AT2G29130.1 44.923 581 295 11 8 572 2 573 7.23e-176 509
Msa1023430 AT5G07130.1 44.965 576 289 13 12 572 7 569 1.14e-174 506
Msa1023430 AT3G09220.2 54.428 463 194 9 99 555 2 453 1.24e-173 500
Msa1023430 AT5G03260.1 45.913 575 290 12 1 572 1 557 3.96e-171 497
Msa1023430 AT5G60020.1 44.293 587 302 11 1 572 1 577 6.45e-171 497
Msa1023430 AT5G60020.3 45.750 553 276 10 35 572 2 545 7.23e-170 493
Msa1023430 AT2G38080.1 43.608 571 299 12 8 572 5 558 3.06e-167 487
Msa1023430 AT5G58910.2 43.281 573 312 8 2 572 6 567 1.23e-166 486
Msa1023430 AT5G58910.3 43.630 573 309 9 2 572 6 566 1.53e-166 486
Msa1023430 AT5G09360.1 43.110 566 300 10 12 572 21 569 2.54e-165 483
Msa1023430 AT1G18140.1 44.991 569 286 13 21 572 23 581 9.16e-165 481
Msa1023430 AT5G01190.1 44.251 574 298 8 1 572 5 558 5.02e-163 476
Msa1023430 AT5G58910.1 44.590 536 277 9 39 572 6 523 8.04e-161 469
Msa1023430 AT5G01190.2 45.369 529 272 7 46 572 31 544 1.58e-156 459
Msa1023430 AT2G46570.1 44.144 555 291 9 23 572 29 569 1.13e-155 458
Msa1023430 AT5G48100.1 44.567 543 278 12 29 562 25 553 8.41e-153 450
Msa1023430 AT5G60020.2 43.303 545 284 11 1 530 1 535 4.25e-150 443
Msa1023430 AT5G07130.2 44.668 497 250 12 88 572 1 484 2.83e-145 428
Msa1023430 AT5G07130.3 44.668 497 250 12 88 572 1 484 2.83e-145 428
Msa1023430 AT2G46570.2 43.838 495 259 9 83 572 4 484 4.90e-134 399
Msa1023430 AT4G39830.1 28.856 603 338 20 13 572 23 577 1.64e-64 221
Msa1023430 AT5G21105.1 29.983 597 345 20 2 563 16 574 1.89e-64 221
Msa1023430 AT5G21100.1 28.952 563 329 18 21 551 19 542 9.77e-63 216
Msa1023430 AT5G21105.3 29.590 561 325 19 2 530 16 538 4.78e-56 197
Msa1023430 AT4G39830.2 28.868 530 287 19 85 572 1 482 4.89e-49 177
Msa1023430 AT4G39830.3 28.872 523 282 19 92 572 6 480 1.83e-47 173
Msa1023430 AT4G39830.4 28.355 529 278 18 85 572 1 469 5.58e-46 169
Msa1023430 AT1G41830.1 28.437 531 321 19 16 537 16 496 4.36e-42 159
Msa1023430 AT1G76160.1 27.758 562 348 19 9 562 6 517 1.77e-41 157
Msa1023430 AT4G37160.1 27.605 547 347 15 29 572 34 534 4.63e-41 156
Msa1023430 AT5G66920.1 27.387 555 336 18 29 572 40 538 5.97e-40 153
Msa1023430 AT1G21850.1 28.125 544 307 19 37 562 40 517 9.86e-40 152
Msa1023430 AT5G51480.1 27.730 577 357 18 14 572 16 550 1.27e-39 153
Msa1023430 AT5G48450.2 27.379 515 322 18 40 546 43 513 4.69e-39 151
Msa1023430 AT5G48450.1 27.379 515 322 18 40 546 43 513 9.81e-39 150
Msa1023430 AT2G23630.2 27.239 547 348 17 29 572 38 537 1.24e-38 149
Msa1023430 AT2G23630.1 27.239 547 348 17 29 572 33 532 1.67e-38 149
Msa1023430 AT1G21860.1 26.538 520 315 20 37 545 40 503 2.71e-38 148
Msa1023430 AT1G75790.1 27.425 598 340 25 1 572 12 541 3.76e-38 148
Msa1023430 AT4G12420.1 27.290 535 345 17 30 554 29 529 2.83e-37 146
Msa1023430 AT4G12420.2 27.290 535 345 17 30 554 29 529 2.83e-37 146
Msa1023430 AT4G25240.2 27.826 575 364 17 11 572 14 550 1.24e-36 144
Msa1023430 AT4G25240.1 27.826 575 364 17 11 572 14 550 1.24e-36 144
Msa1023430 AT4G22010.1 26.923 546 331 17 40 572 40 530 1.68e-36 143
Msa1023430 AT5G21105.2 30.769 364 212 12 209 563 51 383 4.51e-34 134
Msa1023430 AT1G55570.1 27.273 561 340 19 1 545 5 513 7.35e-34 135
Msa1023430 AT4G37160.2 28.474 439 269 13 29 464 34 430 8.72e-33 131
Msa1023430 AT4G28090.1 25.595 504 309 18 47 537 49 499 1.97e-32 131
Msa1023430 AT3G13390.1 26.145 524 324 16 36 545 38 512 1.71e-31 129
Msa1023430 AT4G38420.1 25.502 498 324 16 44 536 48 503 2.60e-30 125
Msa1023430 AT3G13400.2 26.815 496 313 18 44 532 45 497 2.94e-28 119
Msa1023430 AT3G13400.1 26.815 496 313 18 44 532 45 497 2.94e-28 119
Msa1023430 AT1G55560.1 25.852 499 314 19 44 532 44 496 1.31e-27 117
Msa1023430 AT4G38420.3 25.105 478 311 16 44 516 48 483 1.33e-26 114
Msa1023430 AT4G38420.2 29.365 252 164 6 44 291 48 289 1.87e-24 107

Find 129 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGTGATTGTTACAGTTAA+TGG 0.188106 7_1:+51131337 Msa1023430:CDS
TCACTTCAGTATGAAGATTT+TGG 0.240050 7_1:+51130504 Msa1023430:exon
TACCAATCACCTAGAATTAT+TGG 0.245668 7_1:-51132149 None:intergenic
TACAGTTGAACGCACTTTCT+TGG 0.249775 7_1:+51130585 Msa1023430:CDS
TGATTTGCCTAAATGTTAAT+TGG 0.249889 7_1:+51133602 Msa1023430:exon
CCTGTACATTTAGCATTTAC+AGG 0.258852 7_1:-51132883 None:intergenic
CGATAAACTCAAGTATAATT+TGG 0.260597 7_1:+51133260 Msa1023430:CDS
AAAGTTGTATATTGTAGATA+TGG 0.282207 7_1:-51133772 None:intergenic
TATGTATATCACAATTAATA+TGG 0.286408 7_1:+51132846 Msa1023430:CDS
TTCACTATCAATGGCTTTCC+TGG 0.291587 7_1:+51132239 Msa1023430:CDS
GGACATTGTGTTATATATTC+AGG 0.298929 7_1:-51131960 None:intergenic
ACAGCATTCATAGTTGAAAA+TGG 0.311293 7_1:+51133543 Msa1023430:CDS
TATCTACAATATACAACTTT+TGG 0.314120 7_1:+51133775 Msa1023430:three_prime_UTR
TACTGAAGTGACCAACTTAT+AGG 0.320145 7_1:-51130492 None:intergenic
TGCTTCACCTTAGTCGATTT+CGG 0.324244 7_1:-51133102 None:intergenic
CCAATGAATTGTTATATTGT+AGG 0.324915 7_1:-51131431 None:intergenic
GGTACTTCCTTGTAGGGTTT+AGG 0.325375 7_1:-51132128 None:intergenic
CATATAGCCAATTAACATTT+AGG 0.326301 7_1:-51133609 None:intergenic
AGTGGGACAGGGACCCAATT+AGG 0.336834 7_1:-51132808 None:intergenic
GACGATTATATCGGTGGTAT+AGG 0.340077 7_1:-51132524 None:intergenic
TTGCTGTGCCGGTGGGAGGA+TGG 0.341412 7_1:+51133307 Msa1023430:CDS
AAGGAAGTACCAATAATTCT+AGG 0.348104 7_1:+51132140 Msa1023430:CDS
AATTATTGGTACTTCCTTGT+AGG 0.349498 7_1:-51132135 None:intergenic
CAAATTATACTTGAGTTTAT+CGG 0.350950 7_1:-51133259 None:intergenic
CAAGCAATAAGTACAACTTT+TGG 0.353686 7_1:+51133724 Msa1023430:three_prime_UTR
CTGTAACAATCACTTGTTCA+TGG 0.365502 7_1:-51131330 None:intergenic
TGCTGTGCCGGTGGGAGGAT+GGG 0.368851 7_1:+51133308 Msa1023430:CDS
TGCTTATTTATCCTATAAGT+TGG 0.376949 7_1:+51130481 Msa1023430:five_prime_UTR
TCCTTGTAGGGTTTAGGAAA+TGG 0.378132 7_1:-51132122 None:intergenic
CCATCCCTGACTTCCAGCTT+TGG 0.378346 7_1:-51131373 None:intergenic
TTCGGTGTAAATGTAACATT+AGG 0.379226 7_1:-51133084 None:intergenic
ATGTGGATGATCATAATCTA+TGG 0.380123 7_1:+51133511 Msa1023430:CDS
CAGGTCCAAAGCTGGAAGTC+AGG 0.405362 7_1:+51131368 Msa1023430:CDS
CAATGAATTGTTATATTGTA+GGG 0.414174 7_1:-51131430 None:intergenic
TCGCAACACGGTTGCTGTGC+CGG 0.420527 7_1:+51133296 Msa1023430:CDS
ATTATTGGTACTTCCTTGTA+GGG 0.426822 7_1:-51132134 None:intergenic
CTGACTTCCAGCTTTGGACC+TGG 0.430307 7_1:-51131367 None:intergenic
GTTGTACGTGCAACAGTTCA+TGG 0.431433 7_1:+51132065 Msa1023430:CDS
CACAACAAGAAGGAACATTA+TGG 0.433064 7_1:+51132024 Msa1023430:CDS
ACGATTATATCGGTGGTATA+GGG 0.436829 7_1:-51132523 None:intergenic
GCAACATAACTGGTCTTGTA+GGG 0.442902 7_1:+51132782 Msa1023430:CDS
TACCAATAATTCTAGGTGAT+TGG 0.443010 7_1:+51132147 Msa1023430:CDS
CGAGTGCAGCATTGACCATT+CGG 0.447580 7_1:-51132429 None:intergenic
ATGTATATCACAATTAATAT+GGG 0.450105 7_1:+51132847 Msa1023430:CDS
ATTCTAGGTGATTGGTATGA+TGG 0.450481 7_1:+51132155 Msa1023430:CDS
AGTCATCCCATGCATCTTCA+TGG 0.452974 7_1:+51133186 Msa1023430:CDS
CTCGGTGTATGCGGCATCCA+TGG 0.454245 7_1:-51132500 None:intergenic
AGAACGAGGTTGAATGATAA+TGG 0.461232 7_1:-51132090 None:intergenic
GCCATGTAGTATGAACCTTT+TGG 0.463483 7_1:-51132592 None:intergenic
TCTGATGCTTTCACTATCAA+TGG 0.463727 7_1:+51132230 Msa1023430:CDS
ACATACCAGGATTGTCAGTT+CGG 0.465483 7_1:-51133344 None:intergenic
GCAACCGTGTTGCGAATTGA+AGG 0.469608 7_1:-51133288 None:intergenic
ATTGACCATTCGGAACAAAT+AGG 0.470247 7_1:-51132419 None:intergenic
CCTGTAAATGCTAAATGTAC+AGG 0.471155 7_1:+51132883 Msa1023430:CDS
TACTTGAGTTTATCGGTAGT+AGG 0.471637 7_1:-51133252 None:intergenic
AAAGACAATGGCACGAGTTG+TGG 0.472096 7_1:-51132662 None:intergenic
GCTGCATCACCTTATGTTGT+TGG 0.473113 7_1:+51132613 Msa1023430:CDS
CCAACACCTTCAACTTCACT+TGG 0.476302 7_1:+51133567 Msa1023430:CDS
CCTACAATATAACAATTCAT+TGG 0.477224 7_1:+51131431 Msa1023430:CDS
TGACTTCCAGCTTTGGACCT+GGG 0.483976 7_1:-51131366 None:intergenic
CTGACCATGCACTATATAGC+TGG 0.487286 7_1:-51131932 None:intergenic
ATTATCATTCAACCTCGTTC+TGG 0.487753 7_1:+51132092 Msa1023430:CDS
TGGAAAAGGATATTCCATAA+TGG 0.491498 7_1:+51132963 Msa1023430:CDS
ATTTACACCGAAATCGACTA+AGG 0.491745 7_1:+51133095 Msa1023430:CDS
AGCAACATAACTGGTCTTGT+AGG 0.494287 7_1:+51132781 Msa1023430:CDS
ACATTTAGTACCTTTGATGC+CGG 0.504468 7_1:+51132714 Msa1023430:CDS
AAGTTGTATATTGTAGATAT+GGG 0.508659 7_1:-51133771 None:intergenic
TCCATTTCCTAAACCCTACA+AGG 0.509307 7_1:+51132121 Msa1023430:CDS
ACTGGTTCACCAACAACATA+AGG 0.513560 7_1:-51132622 None:intergenic
TGAAAAGTATATCAGCGCTT+TGG 0.514114 7_1:-51132558 None:intergenic
TCATCCACTTCAAGTGGGAC+AGG 0.515815 7_1:-51132820 None:intergenic
AAGTATATCAGCGCTTTGGC+CGG 0.516172 7_1:-51132554 None:intergenic
TGTGGATGATCATAATCTAT+GGG 0.516377 7_1:+51133512 Msa1023430:CDS
GATATAATCGTCATCGCAGC+CGG 0.517961 7_1:+51132535 Msa1023430:CDS
GAACAATTGAAGAGATCGCC+AGG 0.518140 7_1:-51132257 None:intergenic
TTCACAGCAGACCAACCAAA+AGG 0.519262 7_1:+51132577 Msa1023430:CDS
CATTTAGCATTTACAGGACA+AGG 0.523265 7_1:-51132877 None:intergenic
CAACACGGTTGCTGTGCCGG+TGG 0.525329 7_1:+51133299 Msa1023430:CDS
ACTTTACCCAGGTCCAAAGC+TGG 0.536979 7_1:+51131360 Msa1023430:CDS
TTCATACCATGAAGATGCAT+GGG 0.538306 7_1:-51133192 None:intergenic
ATTCATACCATGAAGATGCA+TGG 0.538422 7_1:-51133193 None:intergenic
CAAATACAATTCAACGGTGG+AGG 0.551874 7_1:+51133128 Msa1023430:CDS
AGTGGTAATGCCGGCATCAA+AGG 0.554962 7_1:-51132724 None:intergenic
TAACATTTAGGCAAATCAGC+AGG 0.558427 7_1:-51133597 None:intergenic
GAATTGTCGAAGAGTCCTAC+TGG 0.559246 7_1:-51132640 None:intergenic
AGATTCCGAACTGACAATCC+TGG 0.559455 7_1:+51133339 Msa1023430:CDS
TTAGGCAAATCAGCAGGTGG+TGG 0.560545 7_1:-51133591 None:intergenic
CAAATTCACAGTGGTAGCCA+TGG 0.562677 7_1:+51132483 Msa1023430:CDS
GGTCCCTGTCCCACTTGAAG+TGG 0.563821 7_1:+51132816 Msa1023430:CDS
AGGTCCAAAGCTGGAAGTCA+GGG 0.569821 7_1:+51131369 Msa1023430:CDS
AACACGGTTGCTGTGCCGGT+GGG 0.573459 7_1:+51133300 Msa1023430:CDS
TATATCGGTGGTATAGGGCT+CGG 0.574475 7_1:-51132518 None:intergenic
GGCTGCGATGACGATTATAT+CGG 0.574707 7_1:-51132533 None:intergenic
AAAGACCTATTTGTTCCGAA+TGG 0.575759 7_1:+51132414 Msa1023430:CDS
GCTAAATGTACAGGTCCACT+TGG 0.578008 7_1:+51132892 Msa1023430:CDS
ACCAAAAGGTTCATACTACA+TGG 0.591334 7_1:+51132591 Msa1023430:CDS
ACGGTTGCTGTGCCGGTGGG+AGG 0.595198 7_1:+51133303 Msa1023430:CDS
CTATATAGTGCATGGTCAGA+CGG 0.595622 7_1:+51131936 Msa1023430:CDS
TTTAATGTGACACAACAAGA+AGG 0.597981 7_1:+51132014 Msa1023430:CDS
GAATCCTTCAATTCGCAACA+CGG 0.600436 7_1:+51133284 Msa1023430:CDS
ATAGCAGCCCATCCTCCCAC+CGG 0.601570 7_1:-51133315 None:intergenic
TTTGGTGTTATGGCTAACAT+GGG 0.602905 7_1:+51130522 Msa1023430:CDS
CATCCACTTCAAGTGGGACA+GGG 0.612302 7_1:-51132819 None:intergenic
GCAATTCAAATACAATTCAA+CGG 0.613563 7_1:+51133122 Msa1023430:CDS
TTGTTGTGAAGTGGTAATGC+CGG 0.616115 7_1:-51132733 None:intergenic
CCAAGTGAAGTTGAAGGTGT+TGG 0.618280 7_1:-51133567 None:intergenic
TATGTTGTTGGTGAACCAGT+AGG 0.621180 7_1:+51132625 Msa1023430:CDS
ATATGTTCATCCACTTCAAG+TGG 0.622032 7_1:-51132826 None:intergenic
ACAGTTAATGGACTTTACCC+AGG 0.628423 7_1:+51131349 Msa1023430:CDS
TGTTCCAGCTATATAGTGCA+TGG 0.629241 7_1:+51131928 Msa1023430:CDS
TGCGATGACGATTATATCGG+TGG 0.631020 7_1:-51132530 None:intergenic
GTAACCCTCGTAAAAGACAA+TGG 0.631523 7_1:-51132674 None:intergenic
CAACATAACTGGTCTTGTAG+GGG 0.631983 7_1:+51132783 Msa1023430:CDS
ATTGGTGTATTGTTGTGAAG+TGG 0.636346 7_1:-51132742 None:intergenic
TTGATAGTGAAAGCATCAGA+TGG 0.637692 7_1:-51132227 None:intergenic
GGTATAGGGCTCGGTGTATG+CGG 0.638721 7_1:-51132509 None:intergenic
TATAAGCTGAAAGTGAAGCA+AGG 0.638942 7_1:+51132391 Msa1023430:CDS
TACCACTGTGAATTTGTGAT+CGG 0.646281 7_1:-51132476 None:intergenic
CCAAAGCTGGAAGTCAGGGA+TGG 0.647318 7_1:+51131373 Msa1023430:CDS
GGTGGACCAAGTGAAGTTGA+AGG 0.647739 7_1:-51133573 None:intergenic
CATTTAGGCAAATCAGCAGG+TGG 0.649176 7_1:-51133594 None:intergenic
AACATAACTGGTCTTGTAGG+GGG 0.652841 7_1:+51132784 Msa1023430:CDS
TATGTTCATCCACTTCAAGT+GGG 0.681147 7_1:-51132825 None:intergenic
TTGGTATGATGGAAATGTTG+AGG 0.683745 7_1:+51132166 Msa1023430:CDS
GTGGATGATCATAATCTATG+GGG 0.686953 7_1:+51133513 Msa1023430:CDS
AACAAGAAGGAACATTATGG+TGG 0.690252 7_1:+51132027 Msa1023430:CDS
AATGGAAATCGACCAGAACG+AGG 0.701372 7_1:-51132104 None:intergenic
ATTCAAATACAATTCAACGG+TGG 0.707341 7_1:+51133125 Msa1023430:CDS
TGCCGATCACAAATTCACAG+TGG 0.784044 7_1:+51132474 Msa1023430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTAATTTTATCTTCATTTA+TGG + chr7_1:51130552-51130571 Msa1023430:CDS 15.0%
!!! TAATTCTTTTAGAAGAATTT+GGG - chr7_1:51131015-51131034 None:intergenic 15.0%
!!! ATAATTCTTTTAGAAGAATT+TGG - chr7_1:51131016-51131035 None:intergenic 15.0%
!!! GATTTTACTATATTTTCTTT+TGG + chr7_1:51131177-51131196 Msa1023430:intron 15.0%
!!! TTGTATGTAAATTTATTTTC+AGG - chr7_1:51131993-51132012 None:intergenic 15.0%
!! TATGTATATCACAATTAATA+TGG + chr7_1:51132846-51132865 Msa1023430:CDS 15.0%
!! ATGTATATCACAATTAATAT+GGG + chr7_1:51132847-51132866 Msa1023430:CDS 15.0%
!!! AATTTGTTGATTGTTTATTT+TGG + chr7_1:51133464-51133483 Msa1023430:intron 15.0%
!! TGATTGCAATTAGTTATATT+GGG - chr7_1:51130711-51130730 None:intergenic 20.0%
!! ATGATTGCAATTAGTTATAT+TGG - chr7_1:51130712-51130731 None:intergenic 20.0%
!!! TCTTCTAAAAGAATTATCAA+AGG + chr7_1:51131019-51131038 Msa1023430:intron 20.0%
!! GAAAATATAGTAAAATCCTT+GGG - chr7_1:51131174-51131193 None:intergenic 20.0%
!! AGAAAATATAGTAAAATCCT+TGG - chr7_1:51131175-51131194 None:intergenic 20.0%
!!! TTGTCTTCTAATGTTTTTTT+TGG + chr7_1:51131215-51131234 Msa1023430:intron 20.0%
!! CAATGAATTGTTATATTGTA+GGG - chr7_1:51131433-51131452 None:intergenic 20.0%
!!! TTTTTTTTTCCTTCCAAATT+TGG + chr7_1:51131514-51131533 Msa1023430:intron 20.0%
!!! TGAATTTTTGAACTATGTAA+AGG + chr7_1:51131898-51131917 Msa1023430:intron 20.0%
!!! AAAATCGTATGTTTCTATTT+CGG + chr7_1:51132282-51132301 Msa1023430:intron 20.0%
!! AATTAACACTAAATTAGAGA+AGG - chr7_1:51132308-51132327 None:intergenic 20.0%
!!! AAATTTTTTAGCAACATAAC+TGG + chr7_1:51132772-51132791 Msa1023430:CDS 20.0%
!!! TTAGGATCCAAAAATATTTT+CGG - chr7_1:51133069-51133088 None:intergenic 20.0%
!! CAAATTATACTTGAGTTTAT+CGG - chr7_1:51133262-51133281 None:intergenic 20.0%
!! ATAAAATACTTATACATACC+AGG - chr7_1:51133360-51133379 None:intergenic 20.0%
!! AAGTTGTATATTGTAGATAT+GGG - chr7_1:51133774-51133793 None:intergenic 20.0%
!! AAAGTTGTATATTGTAGATA+TGG - chr7_1:51133775-51133794 None:intergenic 20.0%
!!! TATCTACAATATACAACTTT+TGG + chr7_1:51133775-51133794 Msa1023430:three_prime_UTR 20.0%
! TGCTTATTTATCCTATAAGT+TGG + chr7_1:51130481-51130500 Msa1023430:five_prime_UTR 25.0%
!! CTATCACATAAATTTTTGCA+AGG + chr7_1:51130747-51130766 Msa1023430:intron 25.0%
!!! TGACTATGACTTTTTTTTGA+CGG + chr7_1:51130872-51130891 Msa1023430:intron 25.0%
! ATTATCAAAGGTCTAAAGAA+AGG + chr7_1:51131031-51131050 Msa1023430:intron 25.0%
!! TATTTTCTTTTTCTTTCTGC+TGG + chr7_1:51131079-51131098 Msa1023430:intron 25.0%
!! ATTTTCTTTTTCTTTCTGCT+GGG + chr7_1:51131080-51131099 Msa1023430:intron 25.0%
! CATTAGAAGACAATTTCAAT+GGG - chr7_1:51131208-51131227 None:intergenic 25.0%
! ACATTAGAAGACAATTTCAA+TGG - chr7_1:51131209-51131228 None:intergenic 25.0%
! CCAATGAATTGTTATATTGT+AGG - chr7_1:51131434-51131453 None:intergenic 25.0%
! CCTACAATATAACAATTCAT+TGG + chr7_1:51131431-51131450 Msa1023430:CDS 25.0%
! AAGGAAAAAAAAATGCTGAA+AGG - chr7_1:51131507-51131526 None:intergenic 25.0%
! TTATATATGAGTTCTTTCTC+TGG - chr7_1:51131810-51131829 None:intergenic 25.0%
!!! AATTTATTTTCAGGACGAAT+TGG - chr7_1:51131984-51132003 None:intergenic 25.0%
! CTAAAAAATTTGTGAGCTAT+TGG - chr7_1:51132763-51132782 None:intergenic 25.0%
! GTAAAAATATGCTTCCATTA+TGG - chr7_1:51132980-51132999 None:intergenic 25.0%
!!! GCATATTTTTACAATGTTAG+TGG + chr7_1:51132988-51133007 Msa1023430:CDS 25.0%
!! TTTACGAAGTCGAAAAATTT+TGG - chr7_1:51133045-51133064 None:intergenic 25.0%
!! TAGGATCCAAAAATATTTTC+GGG - chr7_1:51133068-51133087 None:intergenic 25.0%
! GCAATTCAAATACAATTCAA+CGG + chr7_1:51133122-51133141 Msa1023430:CDS 25.0%
!! TGGTATGAATTTTCATGTTT+TGG + chr7_1:51133206-51133225 Msa1023430:CDS 25.0%
! CGATAAACTCAAGTATAATT+TGG + chr7_1:51133260-51133279 Msa1023430:CDS 25.0%
!! TGATTTGCCTAAATGTTAAT+TGG + chr7_1:51133602-51133621 Msa1023430:exon 25.0%
! CATATAGCCAATTAACATTT+AGG - chr7_1:51133612-51133631 None:intergenic 25.0%
! TCAAAAGAAAAATGTGAAAG+AGG - chr7_1:51133673-51133692 None:intergenic 25.0%
! TCACTTCAGTATGAAGATTT+TGG + chr7_1:51130504-51130523 Msa1023430:exon 30.0%
!!! GTATGAAGATTTTGGTGTTA+TGG + chr7_1:51130512-51130531 Msa1023430:exon 30.0%
CTAATTGCAATCATTTCTCA+CGG + chr7_1:51130718-51130737 Msa1023430:intron 30.0%
! CACATAAATTTTTGCAAGGT+CGG + chr7_1:51130751-51130770 Msa1023430:intron 30.0%
! TTTTCTTTTTCTTTCTGCTG+GGG + chr7_1:51131081-51131100 Msa1023430:intron 30.0%
CAAGTGATTGTTACAGTTAA+TGG + chr7_1:51131337-51131356 Msa1023430:CDS 30.0%
!!! TTTTGGCTCAAATAACATAG+TGG + chr7_1:51131613-51131632 Msa1023430:intron 30.0%
! TTTTGAACTATGTAAAGGCA+TGG + chr7_1:51131903-51131922 Msa1023430:intron 30.0%
GGACATTGTGTTATATATTC+AGG - chr7_1:51131963-51131982 None:intergenic 30.0%
TTTAATGTGACACAACAAGA+AGG + chr7_1:51132014-51132033 Msa1023430:CDS 30.0%
ATTATTGGTACTTCCTTGTA+GGG - chr7_1:51132137-51132156 None:intergenic 30.0%
AATTATTGGTACTTCCTTGT+AGG - chr7_1:51132138-51132157 None:intergenic 30.0%
!! AAGGAAGTACCAATAATTCT+AGG + chr7_1:51132140-51132159 Msa1023430:CDS 30.0%
TACCAATAATTCTAGGTGAT+TGG + chr7_1:51132147-51132166 Msa1023430:CDS 30.0%
TACCAATCACCTAGAATTAT+TGG - chr7_1:51132152-51132171 None:intergenic 30.0%
TGGAAAAGGATATTCCATAA+TGG + chr7_1:51132963-51132982 Msa1023430:CDS 30.0%
!! AAAAATTTTGGAGGGTTATC+TGG - chr7_1:51133033-51133052 None:intergenic 30.0%
! CGTAAACCCGAAAATATTTT+TGG + chr7_1:51133059-51133078 Msa1023430:CDS 30.0%
! TTCGGTGTAAATGTAACATT+AGG - chr7_1:51133087-51133106 None:intergenic 30.0%
ATTCAAATACAATTCAACGG+TGG + chr7_1:51133125-51133144 Msa1023430:CDS 30.0%
!!! TGTTGATTGTTTATTTTGGC+AGG + chr7_1:51133468-51133487 Msa1023430:intron 30.0%
!!! GTTGATTGTTTATTTTGGCA+GGG + chr7_1:51133469-51133488 Msa1023430:intron 30.0%
!!! TTGATTGTTTATTTTGGCAG+GGG + chr7_1:51133470-51133489 Msa1023430:intron 30.0%
ATGTGGATGATCATAATCTA+TGG + chr7_1:51133511-51133530 Msa1023430:CDS 30.0%
TGTGGATGATCATAATCTAT+GGG + chr7_1:51133512-51133531 Msa1023430:CDS 30.0%
ACAGCATTCATAGTTGAAAA+TGG + chr7_1:51133543-51133562 Msa1023430:CDS 30.0%
! CAAGCAATAAGTACAACTTT+TGG + chr7_1:51133724-51133743 Msa1023430:three_prime_UTR 30.0%
! ATATACAACTTTTGGTCATG+TGG + chr7_1:51133783-51133802 Msa1023430:three_prime_UTR 30.0%
TACTGAAGTGACCAACTTAT+AGG - chr7_1:51130495-51130514 None:intergenic 35.0%
!!! TTTTGGTGTTATGGCTAACA+TGG + chr7_1:51130521-51130540 Msa1023430:CDS 35.0%
!! TTTGGTGTTATGGCTAACAT+GGG + chr7_1:51130522-51130541 Msa1023430:CDS 35.0%
!!! TATGACTTTTTTTTGACGGC+CGG + chr7_1:51130876-51130895 Msa1023430:intron 35.0%
TCAAATGAACTAAGCTCACA+AGG + chr7_1:51130941-51130960 Msa1023430:intron 35.0%
GTTGAAATTGAATGAGTTGC+AGG + chr7_1:51131279-51131298 Msa1023430:intron 35.0%
CTGTAACAATCACTTGTTCA+TGG - chr7_1:51131333-51131352 None:intergenic 35.0%
AAAGATAAAGTCTCCTCTCA+TGG - chr7_1:51131583-51131602 None:intergenic 35.0%
!! TCACTTTTGCGATGAATAAG+TGG + chr7_1:51131644-51131663 Msa1023430:intron 35.0%
! GTTCTTTCTCTGGATTTTGA+TGG - chr7_1:51131800-51131819 None:intergenic 35.0%
CACAACAAGAAGGAACATTA+TGG + chr7_1:51132024-51132043 Msa1023430:CDS 35.0%
AACAAGAAGGAACATTATGG+TGG + chr7_1:51132027-51132046 Msa1023430:CDS 35.0%
AGAACGAGGTTGAATGATAA+TGG - chr7_1:51132093-51132112 None:intergenic 35.0%
ATTATCATTCAACCTCGTTC+TGG + chr7_1:51132092-51132111 Msa1023430:CDS 35.0%
ATTCTAGGTGATTGGTATGA+TGG + chr7_1:51132155-51132174 Msa1023430:CDS 35.0%
! TTGGTATGATGGAAATGTTG+AGG + chr7_1:51132166-51132185 Msa1023430:CDS 35.0%
ATCCAAAAAGAACTCGAAAC+AGG + chr7_1:51132194-51132213 Msa1023430:CDS 35.0%
!! TTGATAGTGAAAGCATCAGA+TGG - chr7_1:51132230-51132249 None:intergenic 35.0%
TCTGATGCTTTCACTATCAA+TGG + chr7_1:51132230-51132249 Msa1023430:CDS 35.0%
TATAAGCTGAAAGTGAAGCA+AGG + chr7_1:51132391-51132410 Msa1023430:CDS 35.0%
AAAGACCTATTTGTTCCGAA+TGG + chr7_1:51132414-51132433 Msa1023430:CDS 35.0%
ATTGACCATTCGGAACAAAT+AGG - chr7_1:51132422-51132441 None:intergenic 35.0%
TACCACTGTGAATTTGTGAT+CGG - chr7_1:51132479-51132498 None:intergenic 35.0%
ACGATTATATCGGTGGTATA+GGG - chr7_1:51132526-51132545 None:intergenic 35.0%
! TGAAAAGTATATCAGCGCTT+TGG - chr7_1:51132561-51132580 None:intergenic 35.0%
! TGTAGTATGAACCTTTTGGT+TGG - chr7_1:51132591-51132610 None:intergenic 35.0%
ACCAAAAGGTTCATACTACA+TGG + chr7_1:51132591-51132610 Msa1023430:CDS 35.0%
ACATTTAGTACCTTTGATGC+CGG + chr7_1:51132714-51132733 Msa1023430:CDS 35.0%
ATTGGTGTATTGTTGTGAAG+TGG - chr7_1:51132745-51132764 None:intergenic 35.0%
TATGTTCATCCACTTCAAGT+GGG - chr7_1:51132828-51132847 None:intergenic 35.0%
ATATGTTCATCCACTTCAAG+TGG - chr7_1:51132829-51132848 None:intergenic 35.0%
CATTTAGCATTTACAGGACA+AGG - chr7_1:51132880-51132899 None:intergenic 35.0%
CCTGTACATTTAGCATTTAC+AGG - chr7_1:51132886-51132905 None:intergenic 35.0%
CCTGTAAATGCTAAATGTAC+AGG + chr7_1:51132883-51132902 Msa1023430:CDS 35.0%
! GATGCAAATTTTTGTCCAAG+TGG - chr7_1:51132910-51132929 None:intergenic 35.0%
! TTTTTGCTTCCTGTTGGAAA+AGG + chr7_1:51132949-51132968 Msa1023430:CDS 35.0%
! ATGGAATATCCTTTTCCAAC+AGG - chr7_1:51132961-51132980 None:intergenic 35.0%
! CGAAGTCGAAAAATTTTGGA+GGG - chr7_1:51133041-51133060 None:intergenic 35.0%
! ACGAAGTCGAAAAATTTTGG+AGG - chr7_1:51133042-51133061 None:intergenic 35.0%
ATTTACACCGAAATCGACTA+AGG + chr7_1:51133095-51133114 Msa1023430:CDS 35.0%
TTCATACCATGAAGATGCAT+GGG - chr7_1:51133195-51133214 None:intergenic 35.0%
ATTCATACCATGAAGATGCA+TGG - chr7_1:51133196-51133215 None:intergenic 35.0%
TACTTGAGTTTATCGGTAGT+AGG - chr7_1:51133255-51133274 None:intergenic 35.0%
! ATGGTTTTTGCATTGTCATG+TGG + chr7_1:51133494-51133513 Msa1023430:CDS 35.0%
GTGGATGATCATAATCTATG+GGG + chr7_1:51133513-51133532 Msa1023430:CDS 35.0%
TAACATTTAGGCAAATCAGC+AGG - chr7_1:51133600-51133619 None:intergenic 35.0%
TACAGTTGAACGCACTTTCT+TGG + chr7_1:51130585-51130604 Msa1023430:CDS 40.0%
!!! ATGACTTTTTTTTGACGGCC+GGG + chr7_1:51130877-51130896 Msa1023430:intron 40.0%
AGAAACTGGAACTCACTACA+AGG + chr7_1:51131112-51131131 Msa1023430:intron 40.0%
!! AAAATCCTTGGGTTGAGTCA+GGG - chr7_1:51131163-51131182 None:intergenic 40.0%
!! TAAAATCCTTGGGTTGAGTC+AGG - chr7_1:51131164-51131183 None:intergenic 40.0%
!! ACAGTTAATGGACTTTACCC+AGG + chr7_1:51131349-51131368 Msa1023430:CDS 40.0%
TGTGACGAACCAAATTTGGA+AGG - chr7_1:51131526-51131545 None:intergenic 40.0%
CGATTGTGACGAACCAAATT+TGG - chr7_1:51131530-51131549 None:intergenic 40.0%
CTACATGTTTGATCCATGAG+AGG + chr7_1:51131567-51131586 Msa1023430:intron 40.0%
GCTCAAATAACATAGTGGCT+AGG + chr7_1:51131618-51131637 Msa1023430:intron 40.0%
TTTGTCTCGTGAAGCTTAGT+TGG - chr7_1:51131718-51131737 None:intergenic 40.0%
!! CTTTCTCTGGATTTTGATGG+TGG - chr7_1:51131797-51131816 None:intergenic 40.0%
TGTTCCAGCTATATAGTGCA+TGG + chr7_1:51131928-51131947 Msa1023430:CDS 40.0%
CTATATAGTGCATGGTCAGA+CGG + chr7_1:51131936-51131955 Msa1023430:CDS 40.0%
TCCATTTCCTAAACCCTACA+AGG + chr7_1:51132121-51132140 Msa1023430:CDS 40.0%
TCCTTGTAGGGTTTAGGAAA+TGG - chr7_1:51132125-51132144 None:intergenic 40.0%
TTCACTATCAATGGCTTTCC+TGG + chr7_1:51132239-51132258 Msa1023430:CDS 40.0%
GACGATTATATCGGTGGTAT+AGG - chr7_1:51132527-51132546 None:intergenic 40.0%
! GCCATGTAGTATGAACCTTT+TGG - chr7_1:51132595-51132614 None:intergenic 40.0%
! ACTGGTTCACCAACAACATA+AGG - chr7_1:51132625-51132644 None:intergenic 40.0%
! TATGTTGTTGGTGAACCAGT+AGG + chr7_1:51132625-51132644 Msa1023430:CDS 40.0%
GTAACCCTCGTAAAAGACAA+TGG - chr7_1:51132677-51132696 None:intergenic 40.0%
! TTGTTGTGAAGTGGTAATGC+CGG - chr7_1:51132736-51132755 None:intergenic 40.0%
!! AGCAACATAACTGGTCTTGT+AGG + chr7_1:51132781-51132800 Msa1023430:CDS 40.0%
!! GCAACATAACTGGTCTTGTA+GGG + chr7_1:51132782-51132801 Msa1023430:CDS 40.0%
!! CAACATAACTGGTCTTGTAG+GGG + chr7_1:51132783-51132802 Msa1023430:CDS 40.0%
!! AACATAACTGGTCTTGTAGG+GGG + chr7_1:51132784-51132803 Msa1023430:CDS 40.0%
!!! GAGTCATTTTTGCTTCCTGT+TGG + chr7_1:51132943-51132962 Msa1023430:CDS 40.0%
! TGCTTCACCTTAGTCGATTT+CGG - chr7_1:51133105-51133124 None:intergenic 40.0%
CAAATACAATTCAACGGTGG+AGG + chr7_1:51133128-51133147 Msa1023430:CDS 40.0%
!!! CATGTTTTGGCTCAAGACTT+CGG + chr7_1:51133219-51133238 Msa1023430:CDS 40.0%
!!! ATGTTTTGGCTCAAGACTTC+GGG + chr7_1:51133220-51133239 Msa1023430:CDS 40.0%
GAATCCTTCAATTCGCAACA+CGG + chr7_1:51133284-51133303 Msa1023430:CDS 40.0%
ACATACCAGGATTGTCAGTT+CGG - chr7_1:51133347-51133366 None:intergenic 40.0%
!!! TGTTTATTTTGGCAGGGGTA+TGG + chr7_1:51133475-51133494 Msa1023430:intron 40.0%
! AAGTACAACTTTTGGTCACG+TGG + chr7_1:51133732-51133751 Msa1023430:three_prime_UTR 40.0%
!!! TGACTTTTTTTTGACGGCCG+GGG + chr7_1:51130878-51130897 Msa1023430:intron 45.0%
AAAGTATGCAGTTCGAACCC+CGG - chr7_1:51130898-51130917 None:intergenic 45.0%
TACACATGAGTTTGTCCGAG+TGG + chr7_1:51130970-51130989 Msa1023430:intron 45.0%
AACCTTGACCATGTACCACT+CGG - chr7_1:51130988-51131007 None:intergenic 45.0%
! TCTTTTTCTTTCTGCTGGGG+TGG + chr7_1:51131084-51131103 Msa1023430:intron 45.0%
! CTTTTTCTTTCTGCTGGGGT+GGG + chr7_1:51131085-51131104 Msa1023430:intron 45.0%
!! TTGGGTTGAGTCAGGGAAAT+TGG - chr7_1:51131156-51131175 None:intergenic 45.0%
AATTTCCCTGACTCAACCCA+AGG + chr7_1:51131155-51131174 Msa1023430:intron 45.0%
TCAGATTAGTGCAGGAGTCA+GGG - chr7_1:51131687-51131706 None:intergenic 45.0%
ATCAGATTAGTGCAGGAGTC+AGG - chr7_1:51131688-51131707 None:intergenic 45.0%
TAGGGACATCAGATTAGTGC+AGG - chr7_1:51131695-51131714 None:intergenic 45.0%
! CTCGTGAAGCTTAGTTGGTA+GGG - chr7_1:51131713-51131732 None:intergenic 45.0%
TCTCGTGAAGCTTAGTTGGT+AGG - chr7_1:51131714-51131733 None:intergenic 45.0%
CTGACCATGCACTATATAGC+TGG - chr7_1:51131935-51131954 None:intergenic 45.0%
GTTGTACGTGCAACAGTTCA+TGG + chr7_1:51132065-51132084 Msa1023430:CDS 45.0%
AATGGAAATCGACCAGAACG+AGG - chr7_1:51132107-51132126 None:intergenic 45.0%
GGTACTTCCTTGTAGGGTTT+AGG - chr7_1:51132131-51132150 None:intergenic 45.0%
!!! CGCCTGTTTCGAGTTCTTTT+TGG - chr7_1:51132199-51132218 None:intergenic 45.0%
GAACAATTGAAGAGATCGCC+AGG - chr7_1:51132260-51132279 None:intergenic 45.0%
TGCCGATCACAAATTCACAG+TGG + chr7_1:51132474-51132493 Msa1023430:CDS 45.0%
CAAATTCACAGTGGTAGCCA+TGG + chr7_1:51132483-51132502 Msa1023430:CDS 45.0%
TATATCGGTGGTATAGGGCT+CGG - chr7_1:51132521-51132540 None:intergenic 45.0%
TGCGATGACGATTATATCGG+TGG - chr7_1:51132533-51132552 None:intergenic 45.0%
GGCTGCGATGACGATTATAT+CGG - chr7_1:51132536-51132555 None:intergenic 45.0%
GATATAATCGTCATCGCAGC+CGG + chr7_1:51132535-51132554 Msa1023430:CDS 45.0%
AAGTATATCAGCGCTTTGGC+CGG - chr7_1:51132557-51132576 None:intergenic 45.0%
TTCACAGCAGACCAACCAAA+AGG + chr7_1:51132577-51132596 Msa1023430:CDS 45.0%
GCTGCATCACCTTATGTTGT+TGG + chr7_1:51132613-51132632 Msa1023430:CDS 45.0%
GAATTGTCGAAGAGTCCTAC+TGG - chr7_1:51132643-51132662 None:intergenic 45.0%
AAAGACAATGGCACGAGTTG+TGG - chr7_1:51132665-51132684 None:intergenic 45.0%
!! TCGTGCCATTGTCTTTTACG+AGG + chr7_1:51132669-51132688 Msa1023430:CDS 45.0%
!! CGTGCCATTGTCTTTTACGA+GGG + chr7_1:51132670-51132689 Msa1023430:CDS 45.0%
TCTTGTAGGGGGTCCTAATT+GGG + chr7_1:51132795-51132814 Msa1023430:CDS 45.0%
GCTAAATGTACAGGTCCACT+TGG + chr7_1:51132892-51132911 Msa1023430:CDS 45.0%
AGTCATCCCATGCATCTTCA+TGG + chr7_1:51133186-51133205 Msa1023430:CDS 45.0%
AGATTCCGAACTGACAATCC+TGG + chr7_1:51133339-51133358 Msa1023430:CDS 45.0%
! CCAAGTGAAGTTGAAGGTGT+TGG - chr7_1:51133570-51133589 None:intergenic 45.0%
CCAACACCTTCAACTTCACT+TGG + chr7_1:51133567-51133586 Msa1023430:CDS 45.0%
CATTTAGGCAAATCAGCAGG+TGG - chr7_1:51133597-51133616 None:intergenic 45.0%
! ACAACTTTTGGTCACGTGGT+AGG + chr7_1:51133736-51133755 Msa1023430:three_prime_UTR 45.0%
!!! TATCTTTTTTTTTTTTTTTT+TGG + chr7_1:51131596-51131615 Msa1023430:intron 5.0%
GAGTTTGTCCGAGTGGTACA+TGG + chr7_1:51130977-51130996 Msa1023430:intron 50.0%
ACTTTACCCAGGTCCAAAGC+TGG + chr7_1:51131360-51131379 Msa1023430:CDS 50.0%
!! TGACTTCCAGCTTTGGACCT+GGG - chr7_1:51131369-51131388 None:intergenic 50.0%
AGGTCCAAAGCTGGAAGTCA+GGG + chr7_1:51131369-51131388 Msa1023430:CDS 50.0%
!! CGAGTGCAGCATTGACCATT+CGG - chr7_1:51132432-51132451 None:intergenic 50.0%
! AGTGGTAATGCCGGCATCAA+AGG - chr7_1:51132727-51132746 None:intergenic 50.0%
GTCTTGTAGGGGGTCCTAAT+TGG + chr7_1:51132794-51132813 Msa1023430:CDS 50.0%
CATCCACTTCAAGTGGGACA+GGG - chr7_1:51132822-51132841 None:intergenic 50.0%
TCATCCACTTCAAGTGGGAC+AGG - chr7_1:51132823-51132842 None:intergenic 50.0%
GCAACCGTGTTGCGAATTGA+AGG - chr7_1:51133291-51133310 None:intergenic 50.0%
GGTGGACCAAGTGAAGTTGA+AGG - chr7_1:51133576-51133595 None:intergenic 50.0%
TTAGGCAAATCAGCAGGTGG+TGG - chr7_1:51133594-51133613 None:intergenic 50.0%
GTCCGAGTGGTACATGGTCA+AGG + chr7_1:51130983-51131002 Msa1023430:intron 55.0%
TTCTTTCTGCTGGGGTGGGT+CGG + chr7_1:51131089-51131108 Msa1023430:intron 55.0%
!! CTGACTTCCAGCTTTGGACC+TGG - chr7_1:51131370-51131389 None:intergenic 55.0%
CAGGTCCAAAGCTGGAAGTC+AGG + chr7_1:51131368-51131387 Msa1023430:CDS 55.0%
CCATCCCTGACTTCCAGCTT+TGG - chr7_1:51131376-51131395 None:intergenic 55.0%
CCAAAGCTGGAAGTCAGGGA+TGG + chr7_1:51131373-51131392 Msa1023430:CDS 55.0%
!! GGTATAGGGCTCGGTGTATG+CGG - chr7_1:51132512-51132531 None:intergenic 55.0%
AGTGGGACAGGGACCCAATT+AGG - chr7_1:51132811-51132830 None:intergenic 55.0%
! CTCGGTGTATGCGGCATCCA+TGG - chr7_1:51132503-51132522 None:intergenic 60.0%
GGTCCCTGTCCCACTTGAAG+TGG + chr7_1:51132816-51132835 Msa1023430:CDS 60.0%
TCGCAACACGGTTGCTGTGC+CGG + chr7_1:51133296-51133315 Msa1023430:CDS 60.0%
! AACACGGTTGCTGTGCCGGT+GGG + chr7_1:51133300-51133319 Msa1023430:CDS 60.0%
ATAGCAGCCCATCCTCCCAC+CGG - chr7_1:51133318-51133337 None:intergenic 60.0%
CTGGGGTGGGTCGGAGAAAC+TGG + chr7_1:51131098-51131117 Msa1023430:intron 65.0%
CAACACGGTTGCTGTGCCGG+TGG + chr7_1:51133299-51133318 Msa1023430:CDS 65.0%
! TTGCTGTGCCGGTGGGAGGA+TGG + chr7_1:51133307-51133326 Msa1023430:CDS 65.0%
! TGCTGTGCCGGTGGGAGGAT+GGG + chr7_1:51133308-51133327 Msa1023430:CDS 65.0%
! ACGGTTGCTGTGCCGGTGGG+AGG + chr7_1:51133303-51133322 Msa1023430:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 51130478 51133806 51130478 ID=Msa1023430;Name=Msa1023430
chr7_1 mRNA 51130478 51133806 51130478 ID=Msa1023430-mRNA-1;Parent=Msa1023430;Name=Msa1023430-mRNA-1;_AED=0.06;_eAED=0.06;_QI=36|1|0.8|1|1|1|5|186|572
chr7_1 exon 51130478 51130606 51130478 ID=Msa1023430-mRNA-1:exon:10055;Parent=Msa1023430-mRNA-1
chr7_1 exon 51131301 51131452 51131301 ID=Msa1023430-mRNA-1:exon:10056;Parent=Msa1023430-mRNA-1
chr7_1 exon 51131920 51132287 51131920 ID=Msa1023430-mRNA-1:exon:10057;Parent=Msa1023430-mRNA-1
chr7_1 exon 51132386 51133360 51132386 ID=Msa1023430-mRNA-1:exon:10058;Parent=Msa1023430-mRNA-1
chr7_1 exon 51133490 51133806 51133490 ID=Msa1023430-mRNA-1:exon:10059;Parent=Msa1023430-mRNA-1
chr7_1 five_prime_UTR 51130478 51130513 51130478 ID=Msa1023430-mRNA-1:five_prime_utr;Parent=Msa1023430-mRNA-1
chr7_1 CDS 51130514 51130606 51130514 ID=Msa1023430-mRNA-1:cds;Parent=Msa1023430-mRNA-1
chr7_1 CDS 51131301 51131452 51131301 ID=Msa1023430-mRNA-1:cds;Parent=Msa1023430-mRNA-1
chr7_1 CDS 51131920 51132287 51131920 ID=Msa1023430-mRNA-1:cds;Parent=Msa1023430-mRNA-1
chr7_1 CDS 51132386 51133360 51132386 ID=Msa1023430-mRNA-1:cds;Parent=Msa1023430-mRNA-1
chr7_1 CDS 51133490 51133620 51133490 ID=Msa1023430-mRNA-1:cds;Parent=Msa1023430-mRNA-1
chr7_1 three_prime_UTR 51133621 51133806 51133621 ID=Msa1023430-mRNA-1:three_prime_utr;Parent=Msa1023430-mRNA-1
Gene Sequence

>Msa1023430

ATGAAGATTTTGGTGTTATGGCTAACATGGGCTTTTGCTCTAATTTTATCTTCATTTATGGCTTCTGCTGCTACAGTTGAACGCACTTTCTTGGTTCAAAACAAGACAATTAAACGATTGTGCCATGAACAAGTGATTGTTACAGTTAATGGACTTTACCCAGGTCCAAAGCTGGAAGTCAGGGATGGTGACTCTGTGATTGTTCATGTAATCAACAATTCACCCTACAATATAACAATTCATTGGCATGGAGTGTTCCAGCTATATAGTGCATGGTCAGACGGTCCTGAATATATAACACAATGTCCAATTCGTCCTGAAAATAAATTTACATACAAATTTAATGTGACACAACAAGAAGGAACATTATGGTGGCATGCTCATGCATCAGTTGTACGTGCAACAGTTCATGGTGCCATTATCATTCAACCTCGTTCTGGTCGATTTCCATTTCCTAAACCCTACAAGGAAGTACCAATAATTCTAGGTGATTGGTATGATGGAAATGTTGAGGAGATTATCCAAAAAGAACTCGAAACAGGCGATAAAATACCATCTGATGCTTTCACTATCAATGGCTTTCCTGGCGATCTCTTCAATTGTTCAAAAAATCAGATGTATAAGCTGAAAGTGAAGCAAGGAAAGACCTATTTGTTCCGAATGGTCAATGCTGCACTCGCGAACAATCTTTTCTTCAAGATTGCCGATCACAAATTCACAGTGGTAGCCATGGATGCCGCATACACCGAGCCCTATACCACCGATATAATCGTCATCGCAGCCGGCCAAAGCGCTGATATACTTTTCACAGCAGACCAACCAAAAGGTTCATACTACATGGCTGCATCACCTTATGTTGTTGGTGAACCAGTAGGACTCTTCGACAATTCCACAACTCGTGCCATTGTCTTTTACGAGGGTTACAAAAAATTAAAAACAAAACATTTAGTACCTTTGATGCCGGCATTACCACTTCACAACAATACACCAATAGCTCACAAATTTTTTAGCAACATAACTGGTCTTGTAGGGGGTCCTAATTGGGTCCCTGTCCCACTTGAAGTGGATGAACATATGTATATCACAATTAATATGGGTTTAGTACCTTGTCCTGTAAATGCTAAATGTACAGGTCCACTTGGACAAAAATTTGCATCTAGCATGAACAATGAGTCATTTTTGCTTCCTGTTGGAAAAGGATATTCCATAATGGAAGCATATTTTTACAATGTTAGTGGCATTTACACTACAGATTTTCCAGATAACCCTCCAAAATTTTTCGACTTCGTAAACCCGAAAATATTTTTGGATCCTAATGTTACATTTACACCGAAATCGACTAAGGTGAAGCAATTCAAATACAATTCAACGGTGGAGGTCGTGTTTCAAAATACAGCGATTTTGAATGCGCAAAGTCATCCCATGCATCTTCATGGTATGAATTTTCATGTTTTGGCTCAAGACTTCGGGATTTTCAATCCTACTACCGATAAACTCAAGTATAATTTGGTGAATCCTTCAATTCGCAACACGGTTGCTGTGCCGGTGGGAGGATGGGCTGCTATTAGATTCCGAACTGACAATCCTGGGGTATGGTTTTTGCATTGTCATGTGGATGATCATAATCTATGGGGACTAGTCACAGCATTCATAGTTGAAAATGGACCAACACCTTCAACTTCACTTGGTCCACCACCTGCTGATTTGCCTAAATGTTAA

Protein sequence

>Msa1023430

MKILVLWLTWAFALILSSFMASAATVERTFLVQNKTIKRLCHEQVIVTVNGLYPGPKLEVRDGDSVIVHVINNSPYNITIHWHGVFQLYSAWSDGPEYITQCPIRPENKFTYKFNVTQQEGTLWWHAHASVVRATVHGAIIIQPRSGRFPFPKPYKEVPIILGDWYDGNVEEIIQKELETGDKIPSDAFTINGFPGDLFNCSKNQMYKLKVKQGKTYLFRMVNAALANNLFFKIADHKFTVVAMDAAYTEPYTTDIIVIAAGQSADILFTADQPKGSYYMAASPYVVGEPVGLFDNSTTRAIVFYEGYKKLKTKHLVPLMPALPLHNNTPIAHKFFSNITGLVGGPNWVPVPLEVDEHMYITINMGLVPCPVNAKCTGPLGQKFASSMNNESFLLPVGKGYSIMEAYFYNVSGIYTTDFPDNPPKFFDFVNPKIFLDPNVTFTPKSTKVKQFKYNSTVEVVFQNTAILNAQSHPMHLHGMNFHVLAQDFGIFNPTTDKLKYNLVNPSIRNTVAVPVGGWAAIRFRTDNPGVWFLHCHVDDHNLWGLVTAFIVENGPTPSTSLGPPPADLPKC*