AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1378020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1378020 MtrunA17_Chr8g0388201 92.944 411 23 4 1 408 1 408 0.0 719
Msa1378020 MtrunA17_Chr8g0388231 42.647 408 202 15 1 397 1 387 7.13e-96 293
Msa1378020 MtrunA17_Chr3g0126611 35.326 368 192 14 45 397 45 381 7.81e-71 228
Msa1378020 MtrunA17_Chr5g0396601 36.667 420 215 16 1 393 1 396 3.06e-70 226
Msa1378020 MtrunA17_Chr5g0396611 38.835 412 207 13 1 393 1 386 3.14e-68 221
Msa1378020 MtrunA17_Chr8g0347101 34.637 358 199 10 45 395 33 362 8.66e-56 188
Msa1378020 MtrunA17_Chr5g0396591 38.328 287 138 11 127 393 19 286 2.90e-45 158
Msa1378020 MtrunA17_Chr3g0081611 41.304 138 75 2 264 395 19 156 6.01e-31 116
Msa1378020 MtrunA17_Chr7g0275601 42.636 129 60 3 268 392 35 153 3.24e-25 100
Msa1378020 MtrunA17_Chr7g0248831 33.758 157 89 3 264 405 13 169 1.18e-22 94.4
Msa1378020 MtrunA17_Chr8g0348151 47.826 92 41 2 317 405 88 175 2.27e-21 91.3
Msa1378020 MtrunA17_Chr1g0158621 35.616 146 81 4 9 147 6 145 2.59e-17 79.0
Msa1378020 MtrunA17_Chr7g0248841 41.558 77 43 1 317 391 72 148 3.16e-17 78.6
Msa1378020 MtrunA17_Chr1g0197031 31.746 126 82 2 270 392 23 147 1.29e-16 77.0
Msa1378020 MtrunA17_Chr1g0184171 37.008 127 74 2 268 389 47 172 2.13e-16 79.7
Msa1378020 MtrunA17_Chr6g0451161 39.344 122 64 3 274 389 84 201 2.36e-16 80.1
Msa1378020 MtrunA17_Chr5g0413841 48.611 72 35 1 319 390 116 185 1.63e-15 77.4
Msa1378020 MtrunA17_Chr1g0198201 29.787 141 86 4 270 404 13 146 2.05e-15 75.1
Msa1378020 MtrunA17_Chr1g0177041 37.500 104 61 2 306 405 61 164 2.32e-15 73.6
Msa1378020 MtrunA17_Chr8g0364881 47.222 72 36 1 319 390 68 137 3.37e-15 76.3
Msa1378020 MtrunA17_Chr7g0261091 38.710 93 55 1 308 398 59 151 4.34e-15 75.9
Msa1378020 MtrunA17_Chr4g0059281 34.677 124 63 5 276 389 59 174 5.40e-15 75.5
Msa1378020 MtrunA17_Chr4g0030831 34.259 108 60 2 293 389 47 154 8.93e-15 72.0
Msa1378020 MtrunA17_Chr1g0186661 45.679 81 40 1 313 389 93 173 1.51e-14 74.3
Msa1378020 MtrunA17_Chr1g0197021 29.577 142 91 3 254 392 9 144 1.85e-14 70.9
Msa1378020 MtrunA17_Chr7g0274741 41.772 79 33 2 319 390 70 142 3.31e-14 70.5
Msa1378020 MtrunA17_Chr1g0160731 25.407 307 178 14 1 293 1 270 3.61e-14 74.3
Msa1378020 MtrunA17_Chr1g0167811 37.255 102 56 3 291 389 69 165 4.00e-14 72.8
Msa1378020 MtrunA17_Chr3g0118071 37.179 78 49 0 313 390 70 147 6.16e-14 70.9
Msa1378020 MtrunA17_Chr3g0118061 34.091 88 58 0 303 390 60 147 6.91e-14 70.5
Msa1378020 MtrunA17_Chr3g0133001 42.254 71 39 1 319 389 130 198 8.97e-14 72.4
Msa1378020 MtrunA17_Chr8g0371291 39.726 73 38 1 319 391 158 224 1.11e-13 70.1
Msa1378020 MtrunA17_Chr7g0246761 29.496 139 92 3 270 405 13 148 1.13e-13 69.3
Msa1378020 MtrunA17_Chr4g0013561 44.444 72 37 1 318 389 84 152 1.21e-13 70.1
Msa1378020 MtrunA17_Chr8g0366561 30.345 145 92 3 270 405 58 202 1.26e-13 71.6
Msa1378020 MtrunA17_Chr3g0128771 38.889 72 44 0 319 390 91 162 1.59e-13 68.6
Msa1378020 MtrunA17_Chr5g0444161 33.333 75 50 0 317 391 155 229 1.93e-13 69.7
Msa1378020 MtrunA17_Chr8g0383861 38.462 78 47 1 313 390 107 183 2.19e-13 69.3
Msa1378020 MtrunA17_Chr3g0113811 34.545 110 68 2 300 406 57 165 2.70e-13 67.8
Msa1378020 MtrunA17_Chr8g0383921 40.278 72 42 1 319 390 111 181 2.87e-13 68.6
Msa1378020 MtrunA17_Chr1g0158651 24.781 343 194 14 12 338 24 318 3.05e-13 71.6
Msa1378020 MtrunA17_Chr8g0383881 40.278 72 42 1 319 390 103 173 3.41e-13 68.6
Msa1378020 MtrunA17_Chr8g0383871 40.278 72 42 1 319 390 112 182 4.74e-13 68.2
Msa1378020 MtrunA17_Chr8g0381731 39.759 83 46 2 309 389 136 216 6.60e-13 68.9
Msa1378020 MtrunA17_Chr6g0486651 28.346 127 84 3 267 390 40 162 7.00e-13 69.7
Msa1378020 MtrunA17_Chr4g0060981 31.250 96 63 1 295 390 125 217 7.00e-13 67.8
Msa1378020 MtrunA17_Chr5g0411081 31.852 135 75 5 270 389 58 190 7.86e-13 69.3
Msa1378020 MtrunA17_Chr8g0383941 40.278 72 42 1 319 390 107 177 8.97e-13 67.4
Msa1378020 MtrunA17_Chr7g0273051 40.000 75 42 2 317 389 89 162 1.28e-12 68.6
Msa1378020 MtrunA17_Chr5g0444141 34.667 75 49 0 317 391 190 264 1.43e-12 67.8
Msa1378020 MtrunA17_Chr7g0274711 40.506 79 34 2 319 390 67 139 1.65e-12 65.5
Msa1378020 MtrunA17_Chr4g0073141 34.711 121 65 5 274 389 75 186 2.14e-12 68.6
Msa1378020 MtrunA17_Chr1g0184631 40.506 79 34 2 319 390 68 140 2.38e-12 65.1
Msa1378020 MtrunA17_Chr8g0350741 30.833 120 82 1 270 389 13 131 2.70e-12 65.1
Msa1378020 MtrunA17_Chr8g0345361 46.774 62 29 1 347 408 117 174 2.86e-12 66.2
Msa1378020 MtrunA17_Chr2g0327791 38.028 71 44 0 320 390 108 178 3.26e-12 65.9
Msa1378020 MtrunA17_Chr5g0406031 36.111 72 46 0 319 390 161 232 3.42e-12 65.9
Msa1378020 MtrunA17_Chr7g0255321 30.252 119 74 3 277 389 169 284 3.63e-12 66.6
Msa1378020 MtrunA17_Chr7g0244851 41.096 73 39 2 319 390 81 150 3.63e-12 64.7
Msa1378020 MtrunA17_Chr7g0274721 48.000 50 26 0 341 390 87 136 4.04e-12 64.3
Msa1378020 MtrunA17_Chr7g0274731 48.000 50 26 0 341 390 108 157 4.07e-12 64.7
Msa1378020 MtrunA17_Chr4g0067591 51.163 43 21 0 347 389 104 146 4.87e-12 65.9
Msa1378020 MtrunA17_Chr3g0126931 37.662 77 38 2 319 391 101 171 4.96e-12 67.0
Msa1378020 MtrunA17_Chr5g0409211 46.154 52 28 0 339 390 86 137 5.24e-12 63.9
Msa1378020 MtrunA17_Chr4g0027761 40.845 71 37 1 319 389 100 165 6.85e-12 64.3
Msa1378020 MtrunA17_Chr4g0050041 37.349 83 48 2 309 389 114 194 7.20e-12 66.2
Msa1378020 MtrunA17_Chr8g0383931 53.571 56 25 1 336 390 129 184 8.12e-12 64.7
Msa1378020 MtrunA17_Chr3g0129671 36.620 71 44 1 319 389 109 178 8.72e-12 64.7
Msa1378020 MtrunA17_Chr8g0383901 51.724 58 27 1 333 389 116 173 8.80e-12 64.3
Msa1378020 MtrunA17_Chr2g0325141 43.750 64 31 2 328 389 73 133 9.77e-12 62.8
Msa1378020 MtrunA17_Chr5g0426881 43.056 72 40 1 319 389 114 185 9.94e-12 66.2
Msa1378020 MtrunA17_Chr5g0426871 40.278 72 42 1 319 389 108 179 1.05e-11 66.2
Msa1378020 MtrunA17_Chr5g0426781 33.333 96 57 2 294 389 108 196 1.05e-11 65.9
Msa1378020 MtrunA17_Chr3g0120011 52.174 46 22 0 344 389 116 161 1.11e-11 63.9
Msa1378020 MtrunA17_Chr2g0301871 52.273 44 21 0 347 390 83 126 1.44e-11 65.1
Msa1378020 MtrunA17_Chr3g0132491 50.000 58 26 2 347 401 136 193 1.47e-11 65.5
Msa1378020 MtrunA17_Chr2g0279431 30.392 102 66 3 290 389 105 203 1.56e-11 65.5
Msa1378020 MtrunA17_Chr1g0148631 48.214 56 28 1 335 390 329 383 1.59e-11 65.5
Msa1378020 MtrunA17_Chr7g0276591 53.488 43 20 0 347 389 101 143 1.79e-11 64.7
Msa1378020 MtrunA17_Chr3g0144241 32.174 115 69 3 277 391 43 148 1.82e-11 62.8
Msa1378020 MtrunA17_Chr2g0317671 44.828 58 32 0 333 390 145 202 1.84e-11 63.2
Msa1378020 MtrunA17_Chr1g0161291 55.769 52 22 1 338 389 290 340 2.12e-11 64.7
Msa1378020 MtrunA17_Chr5g0409201 52.273 44 21 0 347 390 93 136 2.56e-11 61.6
Msa1378020 MtrunA17_Chr1g0191601 53.488 43 20 0 347 389 127 169 3.56e-11 64.3
Msa1378020 MtrunA17_Chr8g0345381 40.351 57 34 0 334 390 40 96 3.63e-11 61.2
Msa1378020 MtrunA17_Chr1g0160581 25.403 248 141 12 4 240 1 215 5.13e-11 64.7
Msa1378020 MtrunA17_Chr5g0427431 38.889 72 40 2 319 389 134 202 8.55e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1378020 AT5G53110.1 36.413 368 198 11 38 394 35 377 1.44e-69 224
Msa1378020 AT2G25410.1 33.152 368 206 14 37 392 33 372 3.17e-51 176
Msa1378020 AT2G46495.1 31.967 366 213 11 35 392 28 365 2.58e-50 174
Msa1378020 AT2G46494.1 31.319 364 204 10 34 390 35 359 5.17e-47 165
Msa1378020 AT2G46495.2 31.319 364 190 12 35 392 28 337 1.17e-46 163
Msa1378020 AT1G28040.1 31.250 320 180 11 86 390 2 296 1.93e-37 138
Msa1378020 AT5G07040.1 40.909 154 82 4 256 405 7 155 2.29e-33 122
Msa1378020 AT5G36001.1 28.969 359 173 14 35 392 32 309 1.37e-29 117
Msa1378020 AT2G46160.1 47.059 102 41 2 317 405 102 203 1.67e-22 95.1
Msa1378020 AT2G46160.2 47.059 102 41 2 317 405 102 203 1.67e-22 95.1
Msa1378020 AT2G46493.1 47.368 95 48 1 298 390 87 181 3.80e-22 93.6
Msa1378020 AT3G61550.1 42.991 107 45 2 315 405 95 201 2.62e-21 92.0
Msa1378020 AT2G35910.1 36.000 150 81 5 265 405 65 208 7.53e-18 82.4
Msa1378020 AT2G35000.1 32.456 114 73 2 280 389 64 177 5.44e-16 79.3
Msa1378020 AT5G06490.1 27.976 168 98 3 264 408 23 190 9.24e-16 75.9
Msa1378020 AT5G05810.1 45.833 72 35 2 319 389 120 188 5.55e-15 76.6
Msa1378020 AT1G04360.1 35.345 116 70 1 298 408 80 195 7.77e-15 75.9
Msa1378020 AT1G23980.1 35.659 129 74 4 268 389 60 186 1.10e-14 75.5
Msa1378020 AT5G66070.5 34.615 130 68 4 273 390 95 219 1.75e-14 72.8
Msa1378020 AT5G66070.1 34.615 130 68 4 273 390 95 219 1.75e-14 72.8
Msa1378020 AT5G36001.2 28.761 226 119 9 35 259 32 216 2.71e-14 72.0
Msa1378020 AT3G03550.1 64.444 45 16 0 347 391 159 203 2.85e-14 73.9
Msa1378020 AT2G20030.1 44.444 72 38 1 319 390 98 167 3.24e-14 74.3
Msa1378020 AT3G05200.1 40.860 93 41 3 319 403 99 185 3.63e-14 73.9
Msa1378020 AT4G28890.1 43.056 72 39 1 319 390 97 166 8.45e-14 73.2
Msa1378020 AT5G66070.2 40.278 72 39 1 319 390 176 243 8.69e-14 71.2
Msa1378020 AT5G43420.1 57.692 52 22 0 347 398 138 189 1.40e-13 72.0
Msa1378020 AT2G27940.1 34.694 98 60 3 294 390 89 183 1.68e-13 70.1
Msa1378020 AT1G33480.1 45.833 72 36 1 318 389 74 142 1.94e-13 70.5
Msa1378020 AT5G17600.1 60.000 45 18 0 347 391 142 186 2.35e-13 71.2
Msa1378020 AT1G72200.1 45.833 72 38 1 319 389 115 186 3.56e-13 71.2
Msa1378020 AT4G09130.1 43.056 72 40 1 319 389 91 162 4.61e-13 70.5
Msa1378020 AT5G57750.1 42.667 75 34 2 320 390 96 165 4.71e-13 68.2
Msa1378020 AT5G40250.1 56.818 44 19 0 347 390 143 186 4.89e-13 70.5
Msa1378020 AT4G40070.1 42.466 73 41 1 319 390 95 167 6.55e-13 69.7
Msa1378020 AT4G17905.2 45.070 71 39 0 319 389 153 223 7.28e-13 69.7
Msa1378020 AT2G34990.2 40.541 74 43 1 317 389 87 160 8.31e-13 69.3
Msa1378020 AT2G34990.1 40.541 74 43 1 317 389 65 138 8.39e-13 68.9
Msa1378020 AT1G80400.1 50.000 66 32 1 335 400 343 407 8.58e-13 70.1
Msa1378020 AT4G17905.1 45.070 71 39 0 319 389 127 197 9.00e-13 68.9
Msa1378020 AT4G09100.1 40.278 72 42 1 319 389 56 127 1.14e-12 65.1
Msa1378020 AT5G27420.1 42.353 85 35 3 319 395 95 173 1.26e-12 69.3
Msa1378020 AT3G48030.2 44.048 84 40 3 319 401 102 179 1.28e-12 68.2
Msa1378020 AT3G48030.1 44.048 84 40 3 319 401 180 257 1.92e-12 68.6
Msa1378020 AT4G09120.1 43.056 72 40 1 319 389 94 165 2.51e-12 68.2
Msa1378020 AT5G01880.1 38.889 72 42 2 319 390 79 148 3.57e-12 64.7
Msa1378020 AT1G49220.1 41.667 72 41 1 319 390 108 178 3.66e-12 66.6
Msa1378020 AT1G22500.1 40.909 88 49 2 319 403 89 176 4.06e-12 67.8
Msa1378020 AT2G17730.1 37.500 72 44 1 319 389 167 238 4.51e-12 66.2
Msa1378020 AT4G35840.1 35.616 73 46 1 319 390 162 234 5.00e-12 65.9
Msa1378020 AT1G76410.1 32.520 123 62 6 274 391 42 148 5.20e-12 64.7
Msa1378020 AT4G30400.1 53.488 43 20 0 347 389 134 176 5.45e-12 67.8
Msa1378020 AT4G10160.1 43.056 72 38 1 318 389 71 139 6.36e-12 65.5
Msa1378020 AT2G47560.1 38.028 71 44 0 319 389 80 150 7.06e-12 65.1
Msa1378020 AT4G10150.1 43.056 72 38 1 318 389 85 153 7.35e-12 65.5
Msa1378020 AT2G18650.1 54.545 44 20 0 347 390 126 169 7.64e-12 67.0
Msa1378020 AT3G20395.1 36.709 79 46 1 319 397 147 221 7.82e-12 65.1
Msa1378020 AT3G16720.1 48.936 47 24 0 347 393 119 165 7.97e-12 66.2
Msa1378020 AT4G33565.1 38.095 84 48 2 308 389 178 259 8.21e-12 66.6
Msa1378020 AT4G15975.1 51.064 47 23 0 347 393 76 122 9.90e-12 65.1
Msa1378020 AT1G49210.1 38.889 72 43 1 319 390 108 178 1.11e-11 64.7
Msa1378020 AT4G09110.1 41.667 72 41 1 319 389 94 165 1.16e-11 65.9
Msa1378020 AT1G72310.1 50.000 54 24 1 347 397 127 180 1.27e-11 65.9
Msa1378020 AT1G20823.1 31.405 121 68 5 277 391 44 155 1.31e-11 63.9
Msa1378020 AT4G32600.1 45.312 64 33 2 338 400 354 416 2.60e-11 65.5
Msa1378020 AT4G32600.2 45.312 64 33 2 338 400 354 416 2.60e-11 65.5
Msa1378020 AT5G10380.1 55.814 43 19 0 347 389 135 177 2.72e-11 64.7
Msa1378020 AT1G72220.1 31.200 125 72 3 277 389 97 219 3.72e-11 65.1
Msa1378020 AT4G11680.1 56.250 48 20 1 342 389 333 379 4.42e-11 64.7
Msa1378020 AT3G61180.1 49.091 55 27 1 335 389 311 364 4.81e-11 64.3
Msa1378020 AT3G14320.1 50.000 44 22 0 347 390 88 131 5.91e-11 62.0
Msa1378020 AT1G49200.1 36.111 72 45 1 319 390 109 179 8.39e-11 62.0
Msa1378020 AT3G62690.1 48.837 43 22 0 347 389 113 155 8.82e-11 62.4
Msa1378020 AT3G18773.1 37.500 72 44 1 319 390 103 173 9.68e-11 61.6

Find 93 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCGAAACGGTGAATCTTTA+AGG 0.071957 tig0020047:+62535 None:intergenic
CTTAAATTCAAACAACTTAT+TGG 0.196080 tig0020047:+62435 None:intergenic
CCTTTGTTGATCAAATAGTT+TGG 0.293835 tig0020047:-62623 Msa1378020:CDS
TGGTCAAACATGAAACGTTT+TGG 0.294038 tig0020047:+62576 None:intergenic
TACGTTTCACAACAAAGTTT+TGG 0.294494 tig0020047:+62649 None:intergenic
ATTGTCCTCAATACTTCATT+TGG 0.314741 tig0020047:+60974 None:intergenic
GGTTTAACATGAAGTTGTTT+TGG 0.332010 tig0020047:+62556 None:intergenic
TATATTTGTTATGGTTGAAT+TGG 0.332107 tig0020047:+62464 None:intergenic
AATGATAATTGTTAAGAAGT+TGG 0.336693 tig0020047:+60824 None:intergenic
AAAGATTGGTTTGGTTTGAT+TGG 0.344930 tig0020047:+62751 None:intergenic
AAGAGACGAATTGGTTGTTT+TGG 0.346013 tig0020047:-62287 Msa1378020:CDS
TTTGATTGGTTTAATGAAAA+CGG 0.347137 tig0020047:+62765 None:intergenic
TTGAAAATTCAGTGCTTGTT+TGG 0.351667 tig0020047:+61143 None:intergenic
CTTTGTTGATCAAATAGTTT+GGG 0.357769 tig0020047:-62622 Msa1378020:CDS
TTTCATGTGAATTGTATAGA+TGG 0.358575 tig0020047:-60932 Msa1378020:CDS
GAGGAAGATGTGGATTGGTT+GGG 0.360207 tig0020047:-62197 Msa1378020:CDS
TGTTAAGAAGTTGGAGATAC+AGG 0.363370 tig0020047:+60833 None:intergenic
TGGTGGTACTATATTTGTTA+TGG 0.367373 tig0020047:+62455 None:intergenic
ATCTTCCACTTTCACCAAGC+TGG 0.369581 tig0020047:+61047 None:intergenic
CTTTCAAGGAAAGTCAAGTA+TGG 0.374180 tig0020047:-61262 Msa1378020:CDS
CTAAATCAAAATGGCAACTT+TGG 0.376046 tig0020047:-62916 None:intergenic
AAACCTTCGGACTTCCAATT+CGG 0.377503 tig0020047:-62791 Msa1378020:CDS
TTGATTGGTTTAATGAAAAC+GGG 0.385385 tig0020047:+62766 None:intergenic
GGAATTTGGGAGAGTGAGTA+AGG 0.392436 tig0020047:+62671 None:intergenic
AATGAAAACGGGAACCGAAT+TGG 0.393998 tig0020047:+62777 None:intergenic
ACCTGGGTAACTACAAAGAT+TGG 0.406641 tig0020047:+62737 None:intergenic
ACCTTAAAGATTCACCGTTT+CGG 0.409470 tig0020047:-62536 Msa1378020:CDS
GTATGGTTTAAGCCTAGGTT+TGG 0.409546 tig0020047:-61245 Msa1378020:CDS
TATGGTTTAAGCCTAGGTTT+GGG 0.424366 tig0020047:-61244 Msa1378020:CDS
GGTAACTACAAAGATTGGTT+TGG 0.430126 tig0020047:+62742 None:intergenic
GCTTCACAATTTCCACAATC+AGG 0.434686 tig0020047:+62225 None:intergenic
GGGTTCACTGAAGGTGGTGG+TGG 0.463259 tig0020047:+62692 None:intergenic
TCTTCCACTTTCACCAAGCT+GGG 0.464098 tig0020047:+61048 None:intergenic
ACTGAAGGTGGTGGTGGTGT+TGG 0.466195 tig0020047:+62698 None:intergenic
AGCCTAGGTTTGGGAATACC+TGG 0.477958 tig0020047:-61235 Msa1378020:CDS
GGAGGAAGATGTGGATTGGT+TGG 0.478263 tig0020047:-62198 Msa1378020:CDS
TACCGGTGGAAGAGACGAAT+TGG 0.480121 tig0020047:-62296 Msa1378020:CDS
GTCAAGTATGGTTTAAGCCT+AGG 0.480880 tig0020047:-61250 Msa1378020:CDS
GTCTGCATGTAGGTCTTTCA+AGG 0.481860 tig0020047:-61276 Msa1378020:intron
CTGGAAAATTTCGACACAAA+GGG 0.482093 tig0020047:+60885 None:intergenic
TAGGTCTAATTGTGTTTACA+TGG 0.490881 tig0020047:-61207 Msa1378020:CDS
AGGAAGATGTGGATTGGTTG+GGG 0.491695 tig0020047:-62196 Msa1378020:CDS
AAAACCCAGCTTGGTGAAAG+TGG 0.493961 tig0020047:-61052 Msa1378020:CDS
TTGGGAATACCTGGACTCCT+AGG 0.494340 tig0020047:-61226 Msa1378020:CDS
ATTGACTATTTCACCTTGGG+TGG 0.497251 tig0020047:+62140 None:intergenic
GAAAACGAAGTAGATCTCTC+TGG 0.499315 tig0020047:+60866 None:intergenic
TTTGTTATGGTTGAATTGGA+AGG 0.503015 tig0020047:+62468 None:intergenic
CAAATGTTGTCACTTGGCCT+AGG 0.507133 tig0020047:+61022 None:intergenic
GATGTCCACGGTGTAGCAAA+AGG 0.511204 tig0020047:+62348 None:intergenic
AAATTCAAACAACTTATTGG+TGG 0.519438 tig0020047:+62438 None:intergenic
ACAACATCATGCGAAACCTT+CGG 0.522768 tig0020047:-62804 Msa1378020:CDS
GAACATGAATTATTCGATTG+TGG 0.526227 tig0020047:-62388 Msa1378020:CDS
TTACCCCACAGAACAACAAA+AGG 0.526271 tig0020047:-62849 Msa1378020:CDS
TATTTCGTCAGCTCTGATAC+CGG 0.535195 tig0020047:-62313 Msa1378020:CDS
TAATAATCACTTAACCGAAA+CGG 0.535587 tig0020047:+62522 None:intergenic
AACCAATTCGTCTCTTCCAC+CGG 0.549752 tig0020047:+62294 None:intergenic
TTGAATTGGAAGGACAACTT+AGG 0.549801 tig0020047:+62478 None:intergenic
ACCAATCTTTGTAGTTACCC+AGG 0.550531 tig0020047:-62738 Msa1378020:CDS
GTGCACGTGAGGTCGAAACC+TGG 0.553567 tig0020047:+62720 None:intergenic
ACAATTAGACCTAGGAGTCC+AGG 0.561924 tig0020047:+61217 None:intergenic
TTCTAACATACCGTTGCAGT+GGG 0.563982 tig0020047:-62253 Msa1378020:CDS
TGTTATGATCTTCCCACCCA+AGG 0.578358 tig0020047:-62153 Msa1378020:intron
ATCAGCCAAATGAAGTATTG+AGG 0.579109 tig0020047:-60979 Msa1378020:CDS
AGATACCCTAAAACCCAGCT+TGG 0.586664 tig0020047:-61061 Msa1378020:CDS
ATGTGAATTGTATAGATGGA+TGG 0.587383 tig0020047:-60928 Msa1378020:CDS
GAGTAAGGGTTCACTGAAGG+TGG 0.587696 tig0020047:+62686 None:intergenic
ATTCTAACATACCGTTGCAG+TGG 0.592135 tig0020047:-62254 Msa1378020:CDS
TCTGGAAAATTTCGACACAA+AGG 0.592383 tig0020047:+60884 None:intergenic
CAGTGGGATGATCCTGATTG+TGG 0.594321 tig0020047:-62237 Msa1378020:CDS
CCAAACTATTTGATCAACAA+AGG 0.597408 tig0020047:+62623 None:intergenic
TTGACTATTTCACCTTGGGT+GGG 0.599087 tig0020047:+62141 None:intergenic
GTGAAGAGTTCACATGTGAA+AGG 0.602315 tig0020047:-62827 Msa1378020:CDS
AGTGAGTAAGGGTTCACTGA+AGG 0.603876 tig0020047:+62683 None:intergenic
TAAGGGTTCACTGAAGGTGG+TGG 0.604544 tig0020047:+62689 None:intergenic
TGCACGTGAGGTCGAAACCT+GGG 0.604806 tig0020047:+62721 None:intergenic
TTCGTCAGCTCTGATACCGG+TGG 0.607603 tig0020047:-62310 Msa1378020:CDS
GTGAAAGTGGAAGATTGCCT+AGG 0.611829 tig0020047:-61039 Msa1378020:CDS
ATAGAGCAAATGTTGTCACT+TGG 0.619697 tig0020047:+61016 None:intergenic
GAACCGAATTGGAAGTCCGA+AGG 0.620121 tig0020047:+62788 None:intergenic
TAGTGATACGAGGATGAACA+AGG 0.631273 tig0020047:+62881 None:intergenic
TGGTGGTGTTGGTGCACGTG+AGG 0.632630 tig0020047:+62709 None:intergenic
TGAAAATAGTGATTACACTC+AGG 0.636381 tig0020047:+60950 None:intergenic
AATTCACATAATGATGTCCA+CGG 0.636628 tig0020047:+62336 None:intergenic
GAATTTGGGAGAGTGAGTAA+GGG 0.642074 tig0020047:+62672 None:intergenic
TCAGGATCATCCCACTGCAA+CGG 0.649351 tig0020047:+62243 None:intergenic
GAAGCACGTGGAGGAAGATG+TGG 0.650882 tig0020047:-62207 Msa1378020:CDS
ATGTAAACACAATTAGACCT+AGG 0.654229 tig0020047:+61209 None:intergenic
ACGTGGAGGAAGATGTGGAT+TGG 0.656368 tig0020047:-62202 Msa1378020:CDS
GTCCACGGTGTAGCAAAAGG+AGG 0.695275 tig0020047:+62351 None:intergenic
GTCCAGGTATTCCCAAACCT+AGG 0.704709 tig0020047:+61233 None:intergenic
TGTGGAAATTGTGAAGCACG+TGG 0.742242 tig0020047:-62219 Msa1378020:CDS
GGAAATTGTGAAGCACGTGG+AGG 0.769055 tig0020047:-62216 Msa1378020:CDS
ATACTAATAATAGTGATACG+AGG 0.786051 tig0020047:+62871 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATATCAAAATAGATA+CGG - tig0020047:61752-61771 Msa1378020:intron 10.0%
!! AAAAAATATCAAAATAGATA+CGG - tig0020047:61752-61771 Msa1378020:intron 10.0%
!!! ATTTTGATATTTTTTTTCCA+GGG + tig0020047:61747-61766 None:intergenic 15.0%
!!! TATTTTGATATTTTTTTTCC+AGG + tig0020047:61748-61767 None:intergenic 15.0%
!! AAAAAACATGAAGTTTAATT+TGG - tig0020047:61859-61878 Msa1378020:intron 15.0%
!! AACAAGTTATGTAATTAATT+AGG + tig0020047:62413-62432 None:intergenic 15.0%
!!! ATTTTGATATTTTTTTTCCA+GGG + tig0020047:61747-61766 None:intergenic 15.0%
!!! TATTTTGATATTTTTTTTCC+AGG + tig0020047:61748-61767 None:intergenic 15.0%
!! AAAAAACATGAAGTTTAATT+TGG - tig0020047:61859-61878 Msa1378020:intron 15.0%
!! AACAAGTTATGTAATTAATT+AGG + tig0020047:62413-62432 None:intergenic 15.0%
!!! TTTGATTGGTTTAATGAAAA+CGG + tig0020047:60979-60998 None:intergenic 20.0%
!!! TATATTTGTTATGGTTGAAT+TGG + tig0020047:61280-61299 None:intergenic 20.0%
!! CTTAAATTCAAACAACTTAT+TGG + tig0020047:61309-61328 None:intergenic 20.0%
!!! TGCAAATTTAGATCATATTT+TGG - tig0020047:61648-61667 Msa1378020:intron 20.0%
!!! TTTGGTTTTCTTTTAACTTT+TGG - tig0020047:61666-61685 Msa1378020:intron 20.0%
!!! TCATGTTTTTTTTTATCTTG+CGG + tig0020047:61850-61869 None:intergenic 20.0%
!! AAAATCAAATCAAACAAATG+CGG - tig0020047:61902-61921 Msa1378020:intron 20.0%
!!! AGTTTCAATTTAGATTAGTT+CGG - tig0020047:62074-62093 Msa1378020:intron 20.0%
!!! TTTGATTGGTTTAATGAAAA+CGG + tig0020047:60979-60998 None:intergenic 20.0%
!!! TATATTTGTTATGGTTGAAT+TGG + tig0020047:61280-61299 None:intergenic 20.0%
!! CTTAAATTCAAACAACTTAT+TGG + tig0020047:61309-61328 None:intergenic 20.0%
!!! TGCAAATTTAGATCATATTT+TGG - tig0020047:61648-61667 Msa1378020:intron 20.0%
!!! TTTGGTTTTCTTTTAACTTT+TGG - tig0020047:61666-61685 Msa1378020:intron 20.0%
!!! TCATGTTTTTTTTTATCTTG+CGG + tig0020047:61850-61869 None:intergenic 20.0%
!! AAAATCAAATCAAACAAATG+CGG - tig0020047:61902-61921 Msa1378020:intron 20.0%
!!! AGTTTCAATTTAGATTAGTT+CGG - tig0020047:62074-62093 Msa1378020:intron 20.0%
! ATACTAATAATAGTGATACG+AGG + tig0020047:60873-60892 None:intergenic 25.0%
!!! TTGATTGGTTTAATGAAAAC+GGG + tig0020047:60978-60997 None:intergenic 25.0%
! CTTTGTTGATCAAATAGTTT+GGG - tig0020047:61119-61138 Msa1378020:CDS 25.0%
! TAATAATCACTTAACCGAAA+CGG + tig0020047:61222-61241 None:intergenic 25.0%
! AAATTCAAACAACTTATTGG+TGG + tig0020047:61306-61325 None:intergenic 25.0%
!!! TTTGGTTTTGTTTGATTTTG+AGG - tig0020047:61807-61826 Msa1378020:intron 25.0%
!!! ATTTTTTTGTGTGTTTAGCT+CGG - tig0020047:61958-61977 Msa1378020:intron 25.0%
! ACATTTGATTCAGATGTATT+TGG + tig0020047:62045-62064 None:intergenic 25.0%
! TGTAATTAATTAGGATCCTT+AGG + tig0020047:62404-62423 None:intergenic 25.0%
! TTTCATGTGAATTGTATAGA+TGG - tig0020047:62809-62828 Msa1378020:CDS 25.0%
! ATACTAATAATAGTGATACG+AGG + tig0020047:60873-60892 None:intergenic 25.0%
!!! TTGATTGGTTTAATGAAAAC+GGG + tig0020047:60978-60997 None:intergenic 25.0%
! CTTTGTTGATCAAATAGTTT+GGG - tig0020047:61119-61138 Msa1378020:CDS 25.0%
! TAATAATCACTTAACCGAAA+CGG + tig0020047:61222-61241 None:intergenic 25.0%
! AAATTCAAACAACTTATTGG+TGG + tig0020047:61306-61325 None:intergenic 25.0%
!!! TTTGGTTTTGTTTGATTTTG+AGG - tig0020047:61807-61826 Msa1378020:intron 25.0%
!!! ATTTTTTTGTGTGTTTAGCT+CGG - tig0020047:61958-61977 Msa1378020:intron 25.0%
! ACATTTGATTCAGATGTATT+TGG + tig0020047:62045-62064 None:intergenic 25.0%
! TGTAATTAATTAGGATCCTT+AGG + tig0020047:62404-62423 None:intergenic 25.0%
! TTTCATGTGAATTGTATAGA+TGG - tig0020047:62809-62828 Msa1378020:CDS 25.0%
!! AAAGATTGGTTTGGTTTGAT+TGG + tig0020047:60993-61012 None:intergenic 30.0%
!!! CAACAAAGTTTTGGGAATTT+GGG + tig0020047:61086-61105 None:intergenic 30.0%
!!! ACAACAAAGTTTTGGGAATT+TGG + tig0020047:61087-61106 None:intergenic 30.0%
! ACGTTTCACAACAAAGTTTT+GGG + tig0020047:61094-61113 None:intergenic 30.0%
! TACGTTTCACAACAAAGTTT+TGG + tig0020047:61095-61114 None:intergenic 30.0%
CCAAACTATTTGATCAACAA+AGG + tig0020047:61121-61140 None:intergenic 30.0%
CCTTTGTTGATCAAATAGTT+TGG - tig0020047:61118-61137 Msa1378020:CDS 30.0%
! GGTTTAACATGAAGTTGTTT+TGG + tig0020047:61188-61207 None:intergenic 30.0%
! TTTGTTATGGTTGAATTGGA+AGG + tig0020047:61276-61295 None:intergenic 30.0%
! TGGTGGTACTATATTTGTTA+TGG + tig0020047:61289-61308 None:intergenic 30.0%
GAACATGAATTATTCGATTG+TGG - tig0020047:61353-61372 Msa1378020:intron 30.0%
AATTCACATAATGATGTCCA+CGG + tig0020047:61408-61427 None:intergenic 30.0%
! ATCATTGACTATTTCACCTT+GGG + tig0020047:61607-61626 None:intergenic 30.0%
!!! TTTTTTTTCCAGGGACTATT+TGG + tig0020047:61738-61757 None:intergenic 30.0%
!!! ATTCATAGTGCATTTTGGTT+TGG - tig0020047:61789-61808 Msa1378020:intron 30.0%
!!! GTTTTTCTATTGTGTTGGTT+TGG - tig0020047:62103-62122 Msa1378020:intron 30.0%
! ATAGTTGTGTTGTTCTCATT+GGG + tig0020047:62140-62159 None:intergenic 30.0%
! AATAGTTGTGTTGTTCTCAT+TGG + tig0020047:62141-62160 None:intergenic 30.0%
! TTTCTTTTCCGTTGTTCTTT+TGG - tig0020047:62441-62460 Msa1378020:CDS 30.0%
! TTCTTTTCCGTTGTTCTTTT+GGG - tig0020047:62442-62461 Msa1378020:CDS 30.0%
ATGTAAACACAATTAGACCT+AGG + tig0020047:62535-62554 None:intergenic 30.0%
TAGGTCTAATTGTGTTTACA+TGG - tig0020047:62534-62553 Msa1378020:CDS 30.0%
TATGCAAAAAGAAGAACACA+AGG - tig0020047:62561-62580 Msa1378020:CDS 30.0%
TTGAAAATTCAGTGCTTGTT+TGG + tig0020047:62601-62620 None:intergenic 30.0%
AAGACCCATAACAAAAATTG+GGG + tig0020047:62642-62661 None:intergenic 30.0%
CAAGACCCATAACAAAAATT+GGG + tig0020047:62643-62662 None:intergenic 30.0%
TCAAGACCCATAACAAAAAT+TGG + tig0020047:62644-62663 None:intergenic 30.0%
ATTGTCCTCAATACTTCATT+TGG + tig0020047:62770-62789 None:intergenic 30.0%
TGAAAATAGTGATTACACTC+AGG + tig0020047:62794-62813 None:intergenic 30.0%
ATGTGAATTGTATAGATGGA+TGG - tig0020047:62813-62832 Msa1378020:CDS 30.0%
!! AAAGATTGGTTTGGTTTGAT+TGG + tig0020047:60993-61012 None:intergenic 30.0%
!!! CAACAAAGTTTTGGGAATTT+GGG + tig0020047:61086-61105 None:intergenic 30.0%
!!! ACAACAAAGTTTTGGGAATT+TGG + tig0020047:61087-61106 None:intergenic 30.0%
! ACGTTTCACAACAAAGTTTT+GGG + tig0020047:61094-61113 None:intergenic 30.0%
! TACGTTTCACAACAAAGTTT+TGG + tig0020047:61095-61114 None:intergenic 30.0%
CCAAACTATTTGATCAACAA+AGG + tig0020047:61121-61140 None:intergenic 30.0%
CCTTTGTTGATCAAATAGTT+TGG - tig0020047:61118-61137 Msa1378020:CDS 30.0%
! GGTTTAACATGAAGTTGTTT+TGG + tig0020047:61188-61207 None:intergenic 30.0%
! TTTGTTATGGTTGAATTGGA+AGG + tig0020047:61276-61295 None:intergenic 30.0%
! TGGTGGTACTATATTTGTTA+TGG + tig0020047:61289-61308 None:intergenic 30.0%
GAACATGAATTATTCGATTG+TGG - tig0020047:61353-61372 Msa1378020:intron 30.0%
AATTCACATAATGATGTCCA+CGG + tig0020047:61408-61427 None:intergenic 30.0%
! ATCATTGACTATTTCACCTT+GGG + tig0020047:61607-61626 None:intergenic 30.0%
!!! TTTTTTTTCCAGGGACTATT+TGG + tig0020047:61738-61757 None:intergenic 30.0%
!!! ATTCATAGTGCATTTTGGTT+TGG - tig0020047:61789-61808 Msa1378020:intron 30.0%
!!! GTTTTTCTATTGTGTTGGTT+TGG - tig0020047:62103-62122 Msa1378020:intron 30.0%
! ATAGTTGTGTTGTTCTCATT+GGG + tig0020047:62140-62159 None:intergenic 30.0%
! AATAGTTGTGTTGTTCTCAT+TGG + tig0020047:62141-62160 None:intergenic 30.0%
! TTTCTTTTCCGTTGTTCTTT+TGG - tig0020047:62441-62460 Msa1378020:CDS 30.0%
! TTCTTTTCCGTTGTTCTTTT+GGG - tig0020047:62442-62461 Msa1378020:CDS 30.0%
ATGTAAACACAATTAGACCT+AGG + tig0020047:62535-62554 None:intergenic 30.0%
TAGGTCTAATTGTGTTTACA+TGG - tig0020047:62534-62553 Msa1378020:CDS 30.0%
TATGCAAAAAGAAGAACACA+AGG - tig0020047:62561-62580 Msa1378020:CDS 30.0%
TTGAAAATTCAGTGCTTGTT+TGG + tig0020047:62601-62620 None:intergenic 30.0%
AAGACCCATAACAAAAATTG+GGG + tig0020047:62642-62661 None:intergenic 30.0%
CAAGACCCATAACAAAAATT+GGG + tig0020047:62643-62662 None:intergenic 30.0%
TCAAGACCCATAACAAAAAT+TGG + tig0020047:62644-62663 None:intergenic 30.0%
ATTGTCCTCAATACTTCATT+TGG + tig0020047:62770-62789 None:intergenic 30.0%
TGAAAATAGTGATTACACTC+AGG + tig0020047:62794-62813 None:intergenic 30.0%
ATGTGAATTGTATAGATGGA+TGG - tig0020047:62813-62832 Msa1378020:CDS 30.0%
!!! TTCACCTTTTGTTGTTCTGT+GGG + tig0020047:60899-60918 None:intergenic 35.0%
! GGTAACTACAAAGATTGGTT+TGG + tig0020047:61002-61021 None:intergenic 35.0%
! GGTCAAACATGAAACGTTTT+GGG + tig0020047:61167-61186 None:intergenic 35.0%
! TGGTCAAACATGAAACGTTT+TGG + tig0020047:61168-61187 None:intergenic 35.0%
ACCTTAAAGATTCACCGTTT+CGG - tig0020047:61205-61224 Msa1378020:CDS 35.0%
TTGAATTGGAAGGACAACTT+AGG + tig0020047:61266-61285 None:intergenic 35.0%
! AAGAGACGAATTGGTTGTTT+TGG - tig0020047:61454-61473 Msa1378020:intron 35.0%
! CATCATTGACTATTTCACCT+TGG + tig0020047:61608-61627 None:intergenic 35.0%
AGAAATATCCAAATAGTCCC+TGG - tig0020047:61727-61746 Msa1378020:intron 35.0%
!! GAGGTATTCATAGTGCATTT+TGG - tig0020047:61784-61803 Msa1378020:intron 35.0%
CAAATCAAACAAATGCGGTT+TGG - tig0020047:61907-61926 Msa1378020:intron 35.0%
! ATTTAGATTAGTTCGGTTCG+CGG - tig0020047:62081-62100 Msa1378020:intron 35.0%
! TAGTTGTGTTGTTCTCATTG+GGG + tig0020047:62139-62158 None:intergenic 35.0%
AACTAAACGACTGTGTTTCA+TGG + tig0020047:62188-62207 None:intergenic 35.0%
TGAAACACAGTCGTTTAGTT+TGG - tig0020047:62188-62207 Msa1378020:CDS 35.0%
! GAAACACAGTCGTTTAGTTT+GGG - tig0020047:62189-62208 Msa1378020:CDS 35.0%
AATCTCCACTATAAGTCCTA+AGG - tig0020047:62385-62404 Msa1378020:CDS 35.0%
! TCTTTTCCGTTGTTCTTTTG+GGG - tig0020047:62443-62462 Msa1378020:CDS 35.0%
CTTTCAAGGAAAGTCAAGTA+TGG - tig0020047:62479-62498 Msa1378020:CDS 35.0%
TATGGTTTAAGCCTAGGTTT+GGG - tig0020047:62497-62516 Msa1378020:CDS 35.0%
AGACCCATAACAAAAATTGG+GGG + tig0020047:62641-62660 None:intergenic 35.0%
!! TTTTTGTTATGGGTCTTGAC+AGG - tig0020047:62645-62664 Msa1378020:CDS 35.0%
!! TTTTGTTATGGGTCTTGACA+GGG - tig0020047:62646-62665 Msa1378020:CDS 35.0%
ATAGAGCAAATGTTGTCACT+TGG + tig0020047:62728-62747 None:intergenic 35.0%
!! ATCAGCCAAATGAAGTATTG+AGG - tig0020047:62762-62781 Msa1378020:CDS 35.0%
CTGGAAAATTTCGACACAAA+GGG + tig0020047:62859-62878 None:intergenic 35.0%
TCTGGAAAATTTCGACACAA+AGG + tig0020047:62860-62879 None:intergenic 35.0%
! GAGATCTACTTCGTTTTCTT+CGG - tig0020047:62880-62899 Msa1378020:CDS 35.0%
!!! TTCACCTTTTGTTGTTCTGT+GGG + tig0020047:60899-60918 None:intergenic 35.0%
! GGTAACTACAAAGATTGGTT+TGG + tig0020047:61002-61021 None:intergenic 35.0%
! GGTCAAACATGAAACGTTTT+GGG + tig0020047:61167-61186 None:intergenic 35.0%
! TGGTCAAACATGAAACGTTT+TGG + tig0020047:61168-61187 None:intergenic 35.0%
ACCTTAAAGATTCACCGTTT+CGG - tig0020047:61205-61224 Msa1378020:CDS 35.0%
TTGAATTGGAAGGACAACTT+AGG + tig0020047:61266-61285 None:intergenic 35.0%
! AAGAGACGAATTGGTTGTTT+TGG - tig0020047:61454-61473 Msa1378020:intron 35.0%
! CATCATTGACTATTTCACCT+TGG + tig0020047:61608-61627 None:intergenic 35.0%
AGAAATATCCAAATAGTCCC+TGG - tig0020047:61727-61746 Msa1378020:intron 35.0%
!! GAGGTATTCATAGTGCATTT+TGG - tig0020047:61784-61803 Msa1378020:intron 35.0%
CAAATCAAACAAATGCGGTT+TGG - tig0020047:61907-61926 Msa1378020:intron 35.0%
! ATTTAGATTAGTTCGGTTCG+CGG - tig0020047:62081-62100 Msa1378020:intron 35.0%
! TAGTTGTGTTGTTCTCATTG+GGG + tig0020047:62139-62158 None:intergenic 35.0%
AACTAAACGACTGTGTTTCA+TGG + tig0020047:62188-62207 None:intergenic 35.0%
TGAAACACAGTCGTTTAGTT+TGG - tig0020047:62188-62207 Msa1378020:CDS 35.0%
! GAAACACAGTCGTTTAGTTT+GGG - tig0020047:62189-62208 Msa1378020:CDS 35.0%
AATCTCCACTATAAGTCCTA+AGG - tig0020047:62385-62404 Msa1378020:CDS 35.0%
! TCTTTTCCGTTGTTCTTTTG+GGG - tig0020047:62443-62462 Msa1378020:CDS 35.0%
CTTTCAAGGAAAGTCAAGTA+TGG - tig0020047:62479-62498 Msa1378020:CDS 35.0%
TATGGTTTAAGCCTAGGTTT+GGG - tig0020047:62497-62516 Msa1378020:CDS 35.0%
AGACCCATAACAAAAATTGG+GGG + tig0020047:62641-62660 None:intergenic 35.0%
!! TTTTTGTTATGGGTCTTGAC+AGG - tig0020047:62645-62664 Msa1378020:CDS 35.0%
!! TTTTGTTATGGGTCTTGACA+GGG - tig0020047:62646-62665 Msa1378020:CDS 35.0%
ATAGAGCAAATGTTGTCACT+TGG + tig0020047:62728-62747 None:intergenic 35.0%
!! ATCAGCCAAATGAAGTATTG+AGG - tig0020047:62762-62781 Msa1378020:CDS 35.0%
CTGGAAAATTTCGACACAAA+GGG + tig0020047:62859-62878 None:intergenic 35.0%
TCTGGAAAATTTCGACACAA+AGG + tig0020047:62860-62879 None:intergenic 35.0%
! GAGATCTACTTCGTTTTCTT+CGG - tig0020047:62880-62899 Msa1378020:CDS 35.0%
TAGTGATACGAGGATGAACA+AGG + tig0020047:60863-60882 None:intergenic 40.0%
TTACCCCACAGAACAACAAA+AGG - tig0020047:60892-60911 Msa1378020:CDS 40.0%
!!! TCACCTTTTGTTGTTCTGTG+GGG + tig0020047:60898-60917 None:intergenic 40.0%
!!! CTTCACCTTTTGTTGTTCTG+TGG + tig0020047:60900-60919 None:intergenic 40.0%
GTGAAGAGTTCACATGTGAA+AGG - tig0020047:60914-60933 Msa1378020:CDS 40.0%
ACAACATCATGCGAAACCTT+CGG - tig0020047:60937-60956 Msa1378020:CDS 40.0%
AAACCTTCGGACTTCCAATT+CGG - tig0020047:60950-60969 Msa1378020:CDS 40.0%
AATGAAAACGGGAACCGAAT+TGG + tig0020047:60967-60986 None:intergenic 40.0%
ACCAATCTTTGTAGTTACCC+AGG - tig0020047:61003-61022 Msa1378020:CDS 40.0%
ACCTGGGTAACTACAAAGAT+TGG + tig0020047:61007-61026 None:intergenic 40.0%
GAATTTGGGAGAGTGAGTAA+GGG + tig0020047:61072-61091 None:intergenic 40.0%
ACCGAAACGGTGAATCTTTA+AGG + tig0020047:61209-61228 None:intergenic 40.0%
! TATTTCGTCAGCTCTGATAC+CGG - tig0020047:61428-61447 Msa1378020:intron 40.0%
ATTCTAACATACCGTTGCAG+TGG - tig0020047:61487-61506 Msa1378020:intron 40.0%
TTCTAACATACCGTTGCAGT+GGG - tig0020047:61488-61507 Msa1378020:intron 40.0%
GCTTCACAATTTCCACAATC+AGG + tig0020047:61519-61538 None:intergenic 40.0%
TTGACTATTTCACCTTGGGT+GGG + tig0020047:61603-61622 None:intergenic 40.0%
ATTGACTATTTCACCTTGGG+TGG + tig0020047:61604-61623 None:intergenic 40.0%
!! CAAACAAATGCGGTTTGGTT+TGG - tig0020047:61912-61931 Msa1378020:intron 40.0%
GCATGGTTCAGTTCAATTTG+CGG + tig0020047:62000-62019 None:intergenic 40.0%
GCAAATTGAACTGAACCATG+CGG - tig0020047:61999-62018 Msa1378020:intron 40.0%
!!! CTTTTTTTTACTCAGCCGCA+TGG + tig0020047:62017-62036 None:intergenic 40.0%
! TCGCGGTTTTTCTATTGTGT+TGG - tig0020047:62098-62117 Msa1378020:intron 40.0%
! AGTTGTGTTGTTCTCATTGG+GGG + tig0020047:62138-62157 None:intergenic 40.0%
AAAATCCGCTGTAGTTGCAA+AGG + tig0020047:62219-62238 None:intergenic 40.0%
AGGATCCTTAGGACTTATAG+TGG + tig0020047:62393-62412 None:intergenic 40.0%
GTCAAGTATGGTTTAAGCCT+AGG - tig0020047:62491-62510 Msa1378020:CDS 40.0%
GTATGGTTTAAGCCTAGGTT+TGG - tig0020047:62496-62515 Msa1378020:CDS 40.0%
!! CACCCCCCAATTTTTGTTAT+GGG - tig0020047:62635-62654 Msa1378020:CDS 40.0%
GACCCATAACAAAAATTGGG+GGG + tig0020047:62640-62659 None:intergenic 40.0%
! TTTCACCAAGCTGGGTTTTA+GGG + tig0020047:62688-62707 None:intergenic 40.0%
GAAAACGAAGTAGATCTCTC+TGG + tig0020047:62878-62897 None:intergenic 40.0%
TAGTGATACGAGGATGAACA+AGG + tig0020047:60863-60882 None:intergenic 40.0%
TTACCCCACAGAACAACAAA+AGG - tig0020047:60892-60911 Msa1378020:CDS 40.0%
!!! TCACCTTTTGTTGTTCTGTG+GGG + tig0020047:60898-60917 None:intergenic 40.0%
!!! CTTCACCTTTTGTTGTTCTG+TGG + tig0020047:60900-60919 None:intergenic 40.0%
GTGAAGAGTTCACATGTGAA+AGG - tig0020047:60914-60933 Msa1378020:CDS 40.0%
ACAACATCATGCGAAACCTT+CGG - tig0020047:60937-60956 Msa1378020:CDS 40.0%
AAACCTTCGGACTTCCAATT+CGG - tig0020047:60950-60969 Msa1378020:CDS 40.0%
AATGAAAACGGGAACCGAAT+TGG + tig0020047:60967-60986 None:intergenic 40.0%
ACCAATCTTTGTAGTTACCC+AGG - tig0020047:61003-61022 Msa1378020:CDS 40.0%
ACCTGGGTAACTACAAAGAT+TGG + tig0020047:61007-61026 None:intergenic 40.0%
GAATTTGGGAGAGTGAGTAA+GGG + tig0020047:61072-61091 None:intergenic 40.0%
ACCGAAACGGTGAATCTTTA+AGG + tig0020047:61209-61228 None:intergenic 40.0%
! TATTTCGTCAGCTCTGATAC+CGG - tig0020047:61428-61447 Msa1378020:intron 40.0%
ATTCTAACATACCGTTGCAG+TGG - tig0020047:61487-61506 Msa1378020:intron 40.0%
TTCTAACATACCGTTGCAGT+GGG - tig0020047:61488-61507 Msa1378020:intron 40.0%
GCTTCACAATTTCCACAATC+AGG + tig0020047:61519-61538 None:intergenic 40.0%
TTGACTATTTCACCTTGGGT+GGG + tig0020047:61603-61622 None:intergenic 40.0%
ATTGACTATTTCACCTTGGG+TGG + tig0020047:61604-61623 None:intergenic 40.0%
!! CAAACAAATGCGGTTTGGTT+TGG - tig0020047:61912-61931 Msa1378020:intron 40.0%
GCATGGTTCAGTTCAATTTG+CGG + tig0020047:62000-62019 None:intergenic 40.0%
GCAAATTGAACTGAACCATG+CGG - tig0020047:61999-62018 Msa1378020:intron 40.0%
!!! CTTTTTTTTACTCAGCCGCA+TGG + tig0020047:62017-62036 None:intergenic 40.0%
! TCGCGGTTTTTCTATTGTGT+TGG - tig0020047:62098-62117 Msa1378020:intron 40.0%
! AGTTGTGTTGTTCTCATTGG+GGG + tig0020047:62138-62157 None:intergenic 40.0%
AAAATCCGCTGTAGTTGCAA+AGG + tig0020047:62219-62238 None:intergenic 40.0%
AGGATCCTTAGGACTTATAG+TGG + tig0020047:62393-62412 None:intergenic 40.0%
GTCAAGTATGGTTTAAGCCT+AGG - tig0020047:62491-62510 Msa1378020:CDS 40.0%
GTATGGTTTAAGCCTAGGTT+TGG - tig0020047:62496-62515 Msa1378020:CDS 40.0%
!! CACCCCCCAATTTTTGTTAT+GGG - tig0020047:62635-62654 Msa1378020:CDS 40.0%
GACCCATAACAAAAATTGGG+GGG + tig0020047:62640-62659 None:intergenic 40.0%
! TTTCACCAAGCTGGGTTTTA+GGG + tig0020047:62688-62707 None:intergenic 40.0%
GAAAACGAAGTAGATCTCTC+TGG + tig0020047:62878-62897 None:intergenic 40.0%
AGTGAGTAAGGGTTCACTGA+AGG + tig0020047:61061-61080 None:intergenic 45.0%
GGAATTTGGGAGAGTGAGTA+AGG + tig0020047:61073-61092 None:intergenic 45.0%
!!! CGTTTTGGGAAGCACTTGTT+GGG + tig0020047:61153-61172 None:intergenic 45.0%
!!! ACGTTTTGGGAAGCACTTGT+TGG + tig0020047:61154-61173 None:intergenic 45.0%
AACCAATTCGTCTCTTCCAC+CGG + tig0020047:61450-61469 None:intergenic 45.0%
TGTGGAAATTGTGAAGCACG+TGG - tig0020047:61522-61541 Msa1378020:intron 45.0%
!! GAGGAAGATGTGGATTGGTT+GGG - tig0020047:61544-61563 Msa1378020:intron 45.0%
!! AGGAAGATGTGGATTGGTTG+GGG - tig0020047:61545-61564 Msa1378020:intron 45.0%
TGTTATGATCTTCCCACCCA+AGG - tig0020047:61588-61607 Msa1378020:intron 45.0%
ATAGATACGGCGAGAACTAG+AGG - tig0020047:61765-61784 Msa1378020:intron 45.0%
!! GCGGTTTGGTTTGGTTGTTA+CGG - tig0020047:61921-61940 Msa1378020:intron 45.0%
GTCTACCTTTGCAACTACAG+CGG - tig0020047:62211-62230 Msa1378020:CDS 45.0%
TGCAGACCCCAAAAGAACAA+CGG + tig0020047:62452-62471 None:intergenic 45.0%
!!! TTCTTTTGGGGTCTGCATGT+AGG - tig0020047:62455-62474 Msa1378020:CDS 45.0%
GTCTGCATGTAGGTCTTTCA+AGG - tig0020047:62465-62484 Msa1378020:CDS 45.0%
ACAATTAGACCTAGGAGTCC+AGG + tig0020047:62527-62546 None:intergenic 45.0%
! GCACCCCCCAATTTTTGTTA+TGG - tig0020047:62634-62653 Msa1378020:CDS 45.0%
AGATACCCTAAAACCCAGCT+TGG - tig0020047:62680-62699 Msa1378020:CDS 45.0%
! CTTTCACCAAGCTGGGTTTT+AGG + tig0020047:62689-62708 None:intergenic 45.0%
! AAAACCCAGCTTGGTGAAAG+TGG - tig0020047:62689-62708 Msa1378020:CDS 45.0%
TCTTCCACTTTCACCAAGCT+GGG + tig0020047:62696-62715 None:intergenic 45.0%
ATCTTCCACTTTCACCAAGC+TGG + tig0020047:62697-62716 None:intergenic 45.0%
GTGAAAGTGGAAGATTGCCT+AGG - tig0020047:62702-62721 Msa1378020:CDS 45.0%
! CAAATGTTGTCACTTGGCCT+AGG + tig0020047:62722-62741 None:intergenic 45.0%
AGTGAGTAAGGGTTCACTGA+AGG + tig0020047:61061-61080 None:intergenic 45.0%
GGAATTTGGGAGAGTGAGTA+AGG + tig0020047:61073-61092 None:intergenic 45.0%
!!! CGTTTTGGGAAGCACTTGTT+GGG + tig0020047:61153-61172 None:intergenic 45.0%
!!! ACGTTTTGGGAAGCACTTGT+TGG + tig0020047:61154-61173 None:intergenic 45.0%
AACCAATTCGTCTCTTCCAC+CGG + tig0020047:61450-61469 None:intergenic 45.0%
TGTGGAAATTGTGAAGCACG+TGG - tig0020047:61522-61541 Msa1378020:intron 45.0%
!! GAGGAAGATGTGGATTGGTT+GGG - tig0020047:61544-61563 Msa1378020:intron 45.0%
!! AGGAAGATGTGGATTGGTTG+GGG - tig0020047:61545-61564 Msa1378020:intron 45.0%
TGTTATGATCTTCCCACCCA+AGG - tig0020047:61588-61607 Msa1378020:intron 45.0%
ATAGATACGGCGAGAACTAG+AGG - tig0020047:61765-61784 Msa1378020:intron 45.0%
!! GCGGTTTGGTTTGGTTGTTA+CGG - tig0020047:61921-61940 Msa1378020:intron 45.0%
GTCTACCTTTGCAACTACAG+CGG - tig0020047:62211-62230 Msa1378020:CDS 45.0%
TGCAGACCCCAAAAGAACAA+CGG + tig0020047:62452-62471 None:intergenic 45.0%
!!! TTCTTTTGGGGTCTGCATGT+AGG - tig0020047:62455-62474 Msa1378020:CDS 45.0%
GTCTGCATGTAGGTCTTTCA+AGG - tig0020047:62465-62484 Msa1378020:CDS 45.0%
ACAATTAGACCTAGGAGTCC+AGG + tig0020047:62527-62546 None:intergenic 45.0%
! GCACCCCCCAATTTTTGTTA+TGG - tig0020047:62634-62653 Msa1378020:CDS 45.0%
AGATACCCTAAAACCCAGCT+TGG - tig0020047:62680-62699 Msa1378020:CDS 45.0%
! CTTTCACCAAGCTGGGTTTT+AGG + tig0020047:62689-62708 None:intergenic 45.0%
! AAAACCCAGCTTGGTGAAAG+TGG - tig0020047:62689-62708 Msa1378020:CDS 45.0%
TCTTCCACTTTCACCAAGCT+GGG + tig0020047:62696-62715 None:intergenic 45.0%
ATCTTCCACTTTCACCAAGC+TGG + tig0020047:62697-62716 None:intergenic 45.0%
GTGAAAGTGGAAGATTGCCT+AGG - tig0020047:62702-62721 Msa1378020:CDS 45.0%
! CAAATGTTGTCACTTGGCCT+AGG + tig0020047:62722-62741 None:intergenic 45.0%
GAACCGAATTGGAAGTCCGA+AGG + tig0020047:60956-60975 None:intergenic 50.0%
TAAGGGTTCACTGAAGGTGG+TGG + tig0020047:61055-61074 None:intergenic 50.0%
GAGTAAGGGTTCACTGAAGG+TGG + tig0020047:61058-61077 None:intergenic 50.0%
! ATCCTCCTTTTGCTACACCG+TGG - tig0020047:61388-61407 Msa1378020:intron 50.0%
GATGTCCACGGTGTAGCAAA+AGG + tig0020047:61396-61415 None:intergenic 50.0%
TACCGGTGGAAGAGACGAAT+TGG - tig0020047:61445-61464 Msa1378020:intron 50.0%
TCAGGATCATCCCACTGCAA+CGG + tig0020047:61501-61520 None:intergenic 50.0%
CAGTGGGATGATCCTGATTG+TGG - tig0020047:61504-61523 Msa1378020:intron 50.0%
GGAAATTGTGAAGCACGTGG+AGG - tig0020047:61525-61544 Msa1378020:intron 50.0%
ACGTGGAGGAAGATGTGGAT+TGG - tig0020047:61539-61558 Msa1378020:intron 50.0%
!! GGAGGAAGATGTGGATTGGT+TGG - tig0020047:61543-61562 Msa1378020:intron 50.0%
AGCCTAGGTTTGGGAATACC+TGG - tig0020047:62506-62525 Msa1378020:CDS 50.0%
GTCCAGGTATTCCCAAACCT+AGG + tig0020047:62511-62530 None:intergenic 50.0%
TTGGGAATACCTGGACTCCT+AGG - tig0020047:62515-62534 Msa1378020:CDS 50.0%
! TGGGGGGTGCGTCATAATAA+AGG + tig0020047:62624-62643 None:intergenic 50.0%
GAACCGAATTGGAAGTCCGA+AGG + tig0020047:60956-60975 None:intergenic 50.0%
TAAGGGTTCACTGAAGGTGG+TGG + tig0020047:61055-61074 None:intergenic 50.0%
GAGTAAGGGTTCACTGAAGG+TGG + tig0020047:61058-61077 None:intergenic 50.0%
! ATCCTCCTTTTGCTACACCG+TGG - tig0020047:61388-61407 Msa1378020:intron 50.0%
GATGTCCACGGTGTAGCAAA+AGG + tig0020047:61396-61415 None:intergenic 50.0%
TACCGGTGGAAGAGACGAAT+TGG - tig0020047:61445-61464 Msa1378020:intron 50.0%
TCAGGATCATCCCACTGCAA+CGG + tig0020047:61501-61520 None:intergenic 50.0%
CAGTGGGATGATCCTGATTG+TGG - tig0020047:61504-61523 Msa1378020:intron 50.0%
GGAAATTGTGAAGCACGTGG+AGG - tig0020047:61525-61544 Msa1378020:intron 50.0%
ACGTGGAGGAAGATGTGGAT+TGG - tig0020047:61539-61558 Msa1378020:intron 50.0%
!! GGAGGAAGATGTGGATTGGT+TGG - tig0020047:61543-61562 Msa1378020:intron 50.0%
AGCCTAGGTTTGGGAATACC+TGG - tig0020047:62506-62525 Msa1378020:CDS 50.0%
GTCCAGGTATTCCCAAACCT+AGG + tig0020047:62511-62530 None:intergenic 50.0%
TTGGGAATACCTGGACTCCT+AGG - tig0020047:62515-62534 Msa1378020:CDS 50.0%
! TGGGGGGTGCGTCATAATAA+AGG + tig0020047:62624-62643 None:intergenic 50.0%
TGCACGTGAGGTCGAAACCT+GGG + tig0020047:61023-61042 None:intergenic 55.0%
!! ACTGAAGGTGGTGGTGGTGT+TGG + tig0020047:61046-61065 None:intergenic 55.0%
GTCCACGGTGTAGCAAAAGG+AGG + tig0020047:61393-61412 None:intergenic 55.0%
! TTCGTCAGCTCTGATACCGG+TGG - tig0020047:61431-61450 Msa1378020:intron 55.0%
GAAGCACGTGGAGGAAGATG+TGG - tig0020047:61534-61553 Msa1378020:intron 55.0%
TGCACGTGAGGTCGAAACCT+GGG + tig0020047:61023-61042 None:intergenic 55.0%
!! ACTGAAGGTGGTGGTGGTGT+TGG + tig0020047:61046-61065 None:intergenic 55.0%
GTCCACGGTGTAGCAAAAGG+AGG + tig0020047:61393-61412 None:intergenic 55.0%
! TTCGTCAGCTCTGATACCGG+TGG - tig0020047:61431-61450 Msa1378020:intron 55.0%
GAAGCACGTGGAGGAAGATG+TGG - tig0020047:61534-61553 Msa1378020:intron 55.0%
GTGCACGTGAGGTCGAAACC+TGG + tig0020047:61024-61043 None:intergenic 60.0%
!! TGGTGGTGTTGGTGCACGTG+AGG + tig0020047:61035-61054 None:intergenic 60.0%
! GGGTTCACTGAAGGTGGTGG+TGG + tig0020047:61052-61071 None:intergenic 60.0%
GTGCACGTGAGGTCGAAACC+TGG + tig0020047:61024-61043 None:intergenic 60.0%
!! TGGTGGTGTTGGTGCACGTG+AGG + tig0020047:61035-61054 None:intergenic 60.0%
! GGGTTCACTGAAGGTGGTGG+TGG + tig0020047:61052-61071 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0020047 gene 60835 62928 60835 ID=Msa1378020;Name=Msa1378020
tig0020047 mRNA 60835 62928 60835 ID=Msa1378020-mRNA-1;Parent=Msa1378020;Name=Msa1378020-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0|1|1|1|2|0|408
tig0020047 exon 62154 62928 62154 ID=Msa1378020-mRNA-1:exon:5918;Parent=Msa1378020-mRNA-1
tig0020047 exon 60835 61286 60835 ID=Msa1378020-mRNA-1:exon:5917;Parent=Msa1378020-mRNA-1
tig0020047 CDS 62154 62928 62154 ID=Msa1378020-mRNA-1:cds;Parent=Msa1378020-mRNA-1
tig0020047 CDS 60835 61286 60835 ID=Msa1378020-mRNA-1:cds;Parent=Msa1378020-mRNA-1
Gene Sequence

>Msa1378020

ATGGCAACTTTGGCATATTTAATTTCCTTGTTCATCCTCGTATCACTATTATTAGTATTACCCCACAGAACAACAAAAGGTGAAGAGTTCACATGTGAAAGGACAACATCATGCGAAACCTTCGGACTTCCAATTCGGTTCCCGTTTTCATTAAACCAATCAAACCAAACCAATCTTTGTAGTTACCCAGGTTTCGACCTCACGTGCACCAACACCACCACCACCTTCAGTGAACCCTTACTCACTCTCCCAAATTCCCAAAACTTTGTTGTGAAACGTATCTCCTTTGTTGATCAAATAGTTTGGGTCAACGATCCCAACAAGTGCTTCCCAAAACGTTTCATGTTTGACCAAAACAACTTCATGTTAAACCTTAAAGATTCACCGTTTCGGTTAAGTGATTATTACACTTTTGTTAATTTTTCGTTCCTAAGTTGTCCTTCCAATTCAACCATAACAAATATAGTACCACCAATAAGTTGTTTGAATTTAAGCTCTTATAATATCAAAAACGATAAGAACATGAATTATTCGATTGTGGCTATGATGTCTGATCCTCCTTTTGCTACACCGTGGACATCATTATGTGAATTTATTTCGTCAGCTCTGATACCGGTGGAAGAGACGAATTGGTTGTTTTGGACTGATTATTATTCTAACATACCGTTGCAGTGGGATGATCCTGATTGTGGAAATTGTGAAGCACGTGGAGGAAGATGTGGATTGGTTGGGGATGATGCTCTTCGTCTTGCTTGTTATGATCTTCCCACCCAAGGTCTTTCAAGGAAAGTCAAGTATGGTTTAAGCCTAGGTTTGGGAATACCTGGACTCCTAGGTCTAATTGTGTTTACATGGATGTTATGCAAAAAGAAGAACACAAGGAATCAAGTACAACGCCAAACAAGCACTGAATTTTCAACCTTTATTATGACGCACCCCCCAATTTTTGTTATGGGTCTTGACAGGGCAACAATCGAAAGATACCCTAAAACCCAGCTTGGTGAAAGTGGAAGATTGCCTAGGCCAAGTGACAACATTTGCTCTATATGTCTTTGTGAGTATCAGCCAAATGAAGTATTGAGGACAATTCCTGAGTGTAATCACTATTTTCATGTGAATTGTATAGATGGATGGCTCAAGACAAATGCTACTTGCCCTTTGTGTCGAAATTTTCCAGAGAGATCTACTTCGTTTTCTTCGGTTTTGCCTGTATCTCCAACTTCTTAA
Protein sequence

>Msa1378020

MATLAYLISLFILVSLLLVLPHRTTKGEEFTCERTTSCETFGLPIRFPFSLNQSNQTNLCSYPGFDLTCTNTTTTFSEPLLTLPNSQNFVVKRISFVDQIVWVNDPNKCFPKRFMFDQNNFMLNLKDSPFRLSDYYTFVNFSFLSCPSNSTITNIVPPISCLNLSSYNIKNDKNMNYSIVAMMSDPPFATPWTSLCEFISSALIPVEETNWLFWTDYYSNIPLQWDDPDCGNCEARGGRCGLVGDDALRLACYDLPTQGLSRKVKYGLSLGLGIPGLLGLIVFTWMLCKKKNTRNQVQRQTSTEFSTFIMTHPPIFVMGLDRATIERYPKTQLGESGRLPRPSDNICSICLCEYQPNEVLRTIPECNHYFHVNCIDGWLKTNATCPLCRNFPERSTSFSSVLPVSPTS*