AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0553560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0553560 MtrunA17_Chr4g0039291 91.349 393 4 8 1 368 1 388 0.0 681
Msa0553560 MtrunA17_Chr4g0020011 68.327 281 71 2 106 368 97 377 1.87e-137 396
Msa0553560 MtrunA17_Chr3g0090071 60.215 279 91 3 108 368 111 387 4.87e-117 345
Msa0553560 MtrunA17_Chr3g0114241 35.271 258 148 6 127 368 462 716 2.26e-41 154
Msa0553560 MtrunA17_Chr2g0320711 32.016 253 153 6 130 368 188 435 5.93e-30 119
Msa0553560 MtrunA17_Chr7g0240091 31.602 231 143 6 149 368 222 448 1.49e-27 112
Msa0553560 MtrunA17_Chr7g0245261 30.396 227 147 3 144 368 101 318 3.75e-23 99.0
Msa0553560 MtrunA17_Chr7g0245291 30.396 227 147 3 144 368 108 325 4.11e-23 99.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0553560 AT5G12470.1 72.242 281 60 2 106 368 103 383 2.92e-149 427
Msa0553560 AT3G56140.2 35.938 256 149 5 127 368 235 489 4.94e-45 162
Msa0553560 AT3G56140.1 35.938 256 149 5 127 368 454 708 5.21e-44 162
Msa0553560 AT3G56140.3 35.938 256 149 5 127 368 454 708 5.21e-44 162
Msa0553560 AT2G40400.2 35.156 256 151 5 127 368 445 699 1.48e-43 160
Msa0553560 AT2G40400.1 35.156 256 151 5 127 368 445 699 1.48e-43 160
Msa0553560 AT2G40400.3 35.922 206 124 3 127 324 445 650 2.28e-34 134
Msa0553560 AT5G22790.1 30.556 252 159 5 130 368 185 433 1.06e-27 113
Msa0553560 AT2G37860.3 29.688 256 155 7 130 368 185 432 3.86e-24 103
Msa0553560 AT2G37860.4 29.688 256 155 7 130 368 185 432 3.86e-24 103
Msa0553560 AT3G08640.1 30.085 236 156 4 135 368 94 322 2.27e-21 94.0
Msa0553560 AT3G08630.1 25.373 268 171 5 106 368 76 319 2.56e-15 76.6

Find 116 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATAGGTACCAAGTTCTTTC+TGG 0.185122 4_1:-50820339 Msa0553560:intron
CTTCCACAGGTTGCTCTCTC+TGG 0.204802 4_1:-50821825 Msa0553560:intron
CCAAGTCATTATCTTTGTTT+TGG 0.213638 4_1:+50820079 None:intergenic
AGCAGCACTGGTAGAAAATA+TGG 0.239676 4_1:+50820678 None:intergenic
AAGGAATGGGGATGGGTTTC+AGG 0.239677 4_1:+50819728 None:intergenic
AAGACCTGGAATGCATTATC+TGG 0.259642 4_1:+50821940 None:intergenic
TGCAAAGAAGGCTGTTAATA+AGG 0.286748 4_1:-50820728 Msa0553560:CDS
AATTATTGAACAGAGGCTTT+TGG 0.323263 4_1:-50820316 Msa0553560:CDS
TGGATTATGCACGTTGGATA+GGG 0.345466 4_1:-50820113 Msa0553560:CDS
TTGTTGTTGTTGGCGCAAGC+GGG 0.349863 4_1:-50823799 Msa0553560:CDS
CTGCCCAGATAATGCATTCC+AGG 0.359487 4_1:-50821944 Msa0553560:intron
GTTACCTTGCACAGCGTAAT+GGG 0.387864 4_1:-50821681 Msa0553560:intron
TGCTGCTTATGGTGTTTATA+TGG 0.391910 4_1:-50820662 Msa0553560:CDS
CTTTGCTTTGCTGTTCGAAC+CGG 0.402782 4_1:-50820255 Msa0553560:CDS
GAGAATGAGAAGAAAGAGAA+TGG 0.416969 4_1:+50824103 None:intergenic
TGAAGCAACCATCGCATAAA+CGG 0.426114 4_1:+50823676 None:intergenic
CAATAATTCCAGAAAGAACT+TGG 0.431709 4_1:+50820331 None:intergenic
CTCATGCTAGAGCAAGGAAT+GGG 0.436391 4_1:+50819715 None:intergenic
TGAACCCAAATACGTATTGC+CGG 0.437016 4_1:+50820236 None:intergenic
GACATCAGAGAACAAATTAA+CGG 0.447455 4_1:-50820003 Msa0553560:three_prime_UTR
GAATGAGGCGTTGTTGTTGT+TGG 0.453993 4_1:-50823809 Msa0553560:CDS
GTGGATTATGCACGTTGGAT+AGG 0.462939 4_1:-50820114 Msa0553560:CDS
GGTTACCTTGCACAGCGTAA+TGG 0.466762 4_1:-50821682 Msa0553560:intron
GAAAGAAGGTACGGCGGAAT+CGG 0.471592 4_1:+50823951 None:intergenic
CCACCACTTGGAGTCAGTGC+AGG 0.480173 4_1:-50821991 Msa0553560:CDS
CTTGCTCTAGCATGAGATGC+AGG 0.481016 4_1:-50819708 Msa0553560:three_prime_UTR
AGTTGGATCTGCTTCGTCAC+TGG 0.485700 4_1:-50821644 Msa0553560:intron
TATTCTTTCTTGCAAAGAGT+TGG 0.485972 4_1:-50821795 Msa0553560:CDS
GTTGTTGTTGTTGGCGCAAG+CGG 0.486703 4_1:-50823800 Msa0553560:CDS
GAAGAAAGAGAATGGGAAGA+AGG 0.488748 4_1:+50824111 None:intergenic
TATCAAGGAAGGTAAGATTC+CGG 0.489746 4_1:-50823737 Msa0553560:intron
GGGAGGGATTTAGGAGTGGA+AGG 0.490063 4_1:+50824081 None:intergenic
AGAATGAGAAGAAAGAGAAT+GGG 0.491291 4_1:+50824104 None:intergenic
ATGCGATGGTTGCTTCAGTT+TGG 0.491847 4_1:-50823670 Msa0553560:CDS
ATGACTTGGATCTTTCTTGA+CGG 0.492317 4_1:-50820065 Msa0553560:three_prime_UTR
CGATGGTTGCTTCAGTTTGG+TGG 0.501146 4_1:-50823667 Msa0553560:CDS
GAGAAGGAGAAGGAGTGATA+CGG 0.506494 4_1:+50824025 None:intergenic
TTCGACGGAGGAGATTCATT+CGG 0.511056 4_1:-50823931 Msa0553560:CDS
TGCCGCAATTAATGCAAAGA+AGG 0.515316 4_1:-50820740 Msa0553560:CDS
GAATCTCCTCCGTCGAAAGA+AGG 0.516336 4_1:+50823937 None:intergenic
GCAGCACTGGTAGAAAATAT+GGG 0.517884 4_1:+50820679 None:intergenic
GGCGCAAGCGGGGAGGTCGT+TGG 0.524312 4_1:-50823788 Msa0553560:CDS
ATACGGAGACGGAGGGAAAG+TGG 0.524321 4_1:+50824042 None:intergenic
CGGAAAGAAGGAGAAGGAGA+AGG 0.527272 4_1:+50824015 None:intergenic
AGTTTATTTACCTGCACCTA+CGG 0.529483 4_1:-50822025 Msa0553560:CDS
GAAAGAGAATGGGAAGAAGG+AGG 0.529887 4_1:+50824114 None:intergenic
CTAAGAGAAACCGTAGGTGC+AGG 0.531784 4_1:+50822015 None:intergenic
ATGGGAAGAAGGAGGAACGA+AGG 0.532917 4_1:+50824122 None:intergenic
CATGGAGGACACGGTGGAGA+CGG 0.533811 4_1:-50823865 Msa0553560:CDS
AGAAGGTACGGCGGAATCGG+TGG 0.534117 4_1:+50823954 None:intergenic
CTCGTAACATCAATTGAATG+AGG 0.540384 4_1:+50819889 None:intergenic
GTTGGATTTGAATGCGGCGT+CGG 0.540654 4_1:-50823601 Msa0553560:CDS
TCTCTGATGTCAAGTAATGA+AGG 0.541604 4_1:+50820015 None:intergenic
CTCATTCAATTGATGTTACG+AGG 0.541710 4_1:-50819888 Msa0553560:three_prime_UTR
CACCACTTGGAGTCAGTGCA+GGG 0.544286 4_1:-50821990 Msa0553560:CDS
CACTAAGTACAAGCTTGTGC+TGG 0.546248 4_1:+50820280 None:intergenic
GTACGGCGGAATCGGTGGAA+TGG 0.550207 4_1:+50823959 None:intergenic
AACAATGACGGACATGGACA+TGG 0.560237 4_1:-50823883 Msa0553560:CDS
AGAAGGGAGGGATTTAGGAG+TGG 0.561658 4_1:+50824077 None:intergenic
AGAAGTCTCCGTTTATGCGA+TGG 0.562508 4_1:-50823684 Msa0553560:CDS
TGGCAGTTTCTAGCAACCTC+AGG 0.563504 4_1:-50820642 Msa0553560:intron
AAAGAGCGGCGGATTGAATG+AGG 0.564436 4_1:-50823824 Msa0553560:CDS
AGCCTTCTTTGCATTAATTG+CGG 0.566973 4_1:+50820738 None:intergenic
CGGTGGTTGATACGGAAAGA+AGG 0.568152 4_1:+50824003 None:intergenic
AGCTTGTGCTGGTGCAACAA+AGG 0.568917 4_1:+50820291 None:intergenic
ATAAACACCATAAGCAGCAC+TGG 0.569201 4_1:+50820666 None:intergenic
GTTTCTCTTAGACCACCACT+TGG 0.569402 4_1:-50822003 Msa0553560:CDS
AGACCTGGAATGCATTATCT+GGG 0.570627 4_1:+50821941 None:intergenic
TCCGCCGTACCTTCTTTCGA+CGG 0.571771 4_1:-50823946 Msa0553560:CDS
GGAGGACACGGTGGAGATGA+CGG 0.571833 4_1:-50823910 Msa0553560:CDS
CCAAAACAAAGATAATGACT+TGG 0.576568 4_1:-50820079 Msa0553560:three_prime_UTR
TTCCGGCGTCTGTAGTTGAG+AGG 0.579757 4_1:-50823720 Msa0553560:CDS
TGTTGTTGGCGCAAGCGGGG+AGG 0.580429 4_1:-50823795 Msa0553560:CDS
GGATTATGCACGTTGGATAG+GGG 0.580434 4_1:-50820112 Msa0553560:CDS
TGTTGTTGTTGGCGCAAGCG+GGG 0.580768 4_1:-50823798 Msa0553560:CDS
ATAAGAATAAGCAGAGTGCT+CGG 0.580986 4_1:+50819927 None:intergenic
GAGAAGGAGTGATACGGAGA+CGG 0.585406 4_1:+50824031 None:intergenic
TCTCATGCTAGAGCAAGGAA+TGG 0.588577 4_1:+50819714 None:intergenic
GACGGAGGAGATTCATTCGG+AGG 0.590101 4_1:-50823928 Msa0553560:CDS
GCAAAGAGTTGGTGCAATTG+TGG 0.590276 4_1:-50821784 Msa0553560:intron
CCTGCACTGACTCCAAGTGG+TGG 0.593747 4_1:+50821991 None:intergenic
TTTCTGGAATTATTGAACAG+AGG 0.594616 4_1:-50820323 Msa0553560:CDS
GCTAAGGTTGGATTTGAATG+CGG 0.594787 4_1:-50823607 Msa0553560:CDS
CTAGAGCAAGGAATGGGGAT+GGG 0.595641 4_1:+50819721 None:intergenic
GCTAGAGCAAGGAATGGGGA+TGG 0.596037 4_1:+50819720 None:intergenic
TCCTCCGTCGAAAGAAGGTA+CGG 0.596564 4_1:+50823942 None:intergenic
CGGAGACGGAGGGAAAGTGG+AGG 0.602640 4_1:+50824045 None:intergenic
AGCAATGACGGAGGAAAGAG+CGG 0.605733 4_1:-50823838 Msa0553560:CDS
GCCGTACCTTCTTTCGACGG+AGG 0.611398 4_1:-50823943 Msa0553560:CDS
GGAGACGGAGGGAAAGTGGA+GGG 0.611726 4_1:+50824046 None:intergenic
ATGCATTATCTGGGCAGTTG+TGG 0.612230 4_1:+50821950 None:intergenic
TTGATACGGAAAGAAGGAGA+AGG 0.613206 4_1:+50824009 None:intergenic
GGAGATTCATTCGGAGGACA+CGG 0.616303 4_1:-50823922 Msa0553560:CDS
GGAAATTGTGTTCGCCGATG+TGG 0.619314 4_1:-50822750 Msa0553560:intron
CTGCATCTCATGCTAGAGCA+AGG 0.621611 4_1:+50819709 None:intergenic
GGACATGGACATGGAGGACA+CGG 0.621700 4_1:-50823874 Msa0553560:CDS
AAGGAGTGATACGGAGACGG+AGG 0.622593 4_1:+50824034 None:intergenic
GGAGACGGAGAAAGCAATGA+CGG 0.629831 4_1:-50823850 Msa0553560:CDS
CGGCGTCGGCGTCTTCACCA+AGG 0.632832 4_1:-50823587 Msa0553560:intron
GCCCCTGCACTGACTCCAAG+TGG 0.636274 4_1:+50821988 None:intergenic
AACCTCTCAACTACAGACGC+CGG 0.638287 4_1:+50823718 None:intergenic
AGGAGTGATACGGAGACGGA+GGG 0.638317 4_1:+50824035 None:intergenic
CTGCTGCTGAGTATGATCGC+CGG 0.647821 4_1:-50822796 Msa0553560:CDS
TGTTAATAAGGACTCTGCAG+AGG 0.657153 4_1:-50820716 Msa0553560:CDS
GTGGAATGGAGAATGAAGAG+AGG 0.659755 4_1:+50823973 None:intergenic
TGAGAATATTCATACCACAT+CGG 0.668109 4_1:+50822736 None:intergenic
GATGGGTGGATTATGCACGT+TGG 0.670645 4_1:-50820119 Msa0553560:CDS
TCATGCTAGAGCAAGGAATG+GGG 0.677655 4_1:+50819716 None:intergenic
GACGGAGAAAGCAATGACGG+AGG 0.690705 4_1:-50823847 Msa0553560:CDS
AATGACGGACATGGACATGG+AGG 0.691667 4_1:-50823880 Msa0553560:CDS
ACCACTTGGAGTCAGTGCAG+GGG 0.698840 4_1:-50821989 Msa0553560:CDS
GATTCATTCGGAGGACACGG+TGG 0.704653 4_1:-50823919 Msa0553560:CDS
AATGACGGAGGAAAGAGCGG+CGG 0.719319 4_1:-50823835 Msa0553560:CDS
CATGGACATGGAGGACACGG+TGG 0.722767 4_1:-50823871 Msa0553560:CDS
TCCGTCGAAAGAAGGTACGG+CGG 0.735456 4_1:+50823945 None:intergenic
GGTGGTCTAAGAGAAACCGT+AGG 0.739590 4_1:+50822009 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAATGATATAAATGAAT+TGG - chr4_1:50821428-50821447 Msa0553560:intron 10.0%
!!! ATATATACTTTTTTTATCTT+TGG - chr4_1:50823956-50823975 Msa0553560:CDS 10.0%
!!! TATATACTTTTTTTATCTTT+GGG - chr4_1:50823957-50823976 Msa0553560:CDS 10.0%
!!! TGATTTAATTTTAGTTGTAA+TGG - chr4_1:50820309-50820328 Msa0553560:CDS 15.0%
!!! ATGTTTTTTAATTTGAATTG+AGG - chr4_1:50820361-50820380 Msa0553560:intron 15.0%
!!! TGTTTTTTAATTTGAATTGA+GGG - chr4_1:50820362-50820381 Msa0553560:intron 15.0%
!! TAAAAAAAAAACAGTTTCTT+TGG - chr4_1:50821476-50821495 Msa0553560:intron 15.0%
!!! TTATTTTTAATGTTTCTAGT+AGG - chr4_1:50822563-50822582 Msa0553560:intron 15.0%
!! AATATATGATATAGATACTT+TGG + chr4_1:50822916-50822935 None:intergenic 15.0%
!!! AAATCTTTTATTGAAAGAAA+AGG + chr4_1:50822943-50822962 None:intergenic 15.0%
!! GAGATAAAAAAAAAACTATT+GGG + chr4_1:50823839-50823858 None:intergenic 15.0%
!! AGAGATAAAAAAAAAACTAT+TGG + chr4_1:50823840-50823859 None:intergenic 15.0%
!!! TTCATTTAATTTAGCTTCTA+TGG - chr4_1:50820270-50820289 Msa0553560:CDS 20.0%
!!! TTTAGTTATATTGAGTGTTT+TGG - chr4_1:50820832-50820851 Msa0553560:intron 20.0%
!! ACTAATTGTTATACAAAATG+TGG - chr4_1:50822108-50822127 Msa0553560:intron 20.0%
!!! ATCATATACCCATAATTTTA+AGG + chr4_1:50822497-50822516 None:intergenic 20.0%
!!! AAGAGTTATTTTTCTATTCA+TGG - chr4_1:50822615-50822634 Msa0553560:intron 20.0%
!! ATATGAAATCATTTATCTAC+TGG - chr4_1:50822854-50822873 Msa0553560:intron 20.0%
!!! TTCATTGTTTTAAATGTAAG+TGG - chr4_1:50822981-50823000 Msa0553560:intron 20.0%
!!! CTCAAACATTTTTAATATGA+TGG + chr4_1:50823401-50823420 None:intergenic 20.0%
!!! GGATTCATTGTTTTAAATTG+CGG - chr4_1:50820383-50820402 Msa0553560:intron 25.0%
! AGTTTGAATATGGTTATTGT+TGG - chr4_1:50820801-50820820 Msa0553560:intron 25.0%
! GTTTGAATATGGTTATTGTT+GGG - chr4_1:50820802-50820821 Msa0553560:intron 25.0%
!! TTATATGTTGATTGACAATC+TGG - chr4_1:50820964-50820983 Msa0553560:intron 25.0%
!! TATATGTTGATTGACAATCT+GGG - chr4_1:50820965-50820984 Msa0553560:intron 25.0%
! AAACATGTCAAAAATAGTCT+GGG + chr4_1:50821246-50821265 None:intergenic 25.0%
! AAAACAGTTTCTTTGGTATT+AGG - chr4_1:50821483-50821502 Msa0553560:intron 25.0%
!! ATGAAAAACACTCTTTTGTT+TGG - chr4_1:50821541-50821560 Msa0553560:intron 25.0%
!!! TGAAAAACACTCTTTTGTTT+GGG - chr4_1:50821542-50821561 Msa0553560:intron 25.0%
! GTTAACAGACATATGTATTA+AGG + chr4_1:50821639-50821658 None:intergenic 25.0%
!!! AAACAATTTTGACAACCTAA+TGG - chr4_1:50821935-50821954 Msa0553560:intron 25.0%
! CAATTGTGGTATGTATAATT+TGG - chr4_1:50822041-50822060 Msa0553560:CDS 25.0%
! TCTCATTTACCTTTAAATCA+TGG - chr4_1:50822372-50822391 Msa0553560:intron 25.0%
! GAATTTAAACACTATAAGTC+CGG + chr4_1:50822410-50822429 None:intergenic 25.0%
! TCCTGTTAACCTTAAAATTA+TGG - chr4_1:50822485-50822504 Msa0553560:intron 25.0%
! CCTGTTAACCTTAAAATTAT+GGG - chr4_1:50822486-50822505 Msa0553560:intron 25.0%
!! AGCATTAGTAGATTTTAGAT+TGG + chr4_1:50823237-50823256 None:intergenic 25.0%
!! TCTAAAATCTACTAATGCTT+CGG - chr4_1:50823238-50823257 Msa0553560:intron 25.0%
! TCATAAAACATGAGTTATAC+TGG + chr4_1:50823659-50823678 None:intergenic 25.0%
!!! CAAGTCATTATCTTTGTTTT+GGG + chr4_1:50823734-50823753 None:intergenic 25.0%
!!! TTTTTTTATCTTTGGGTACA+AGG - chr4_1:50823964-50823983 Msa0553560:CDS 25.0%
!!! AGAAGCAAGTTTTTTCTTAA+TGG - chr4_1:50824037-50824056 Msa0553560:CDS 25.0%
AGAATGAGAAGAAAGAGAAT+GGG + chr4_1:50819710-50819729 None:intergenic 30.0%
! TGATGATCTTTTTCTTGCTA+AGG - chr4_1:50820188-50820207 Msa0553560:intron 30.0%
AGAGTATAAGAATGAAACCT+TGG + chr4_1:50820244-50820263 None:intergenic 30.0%
AATGGAATTAAAGCTTGACA+AGG - chr4_1:50820327-50820346 Msa0553560:CDS 30.0%
!!! ATTGTTTTAAATTGCGGTTG+CGG - chr4_1:50820389-50820408 Msa0553560:intron 30.0%
ATATGAAGCAGATTGAGATT+TGG - chr4_1:50820594-50820613 Msa0553560:intron 30.0%
TATGAAGCAGATTGAGATTT+GGG - chr4_1:50820595-50820614 Msa0553560:intron 30.0%
GGGATTGAATAGTTTGAATA+TGG - chr4_1:50820791-50820810 Msa0553560:intron 30.0%
GAGTTGTATGATTATTGAGT+AGG - chr4_1:50820870-50820889 Msa0553560:intron 30.0%
TGATTATTGAGTAGGAAGAT+TGG - chr4_1:50820878-50820897 Msa0553560:intron 30.0%
GATTATTGAGTAGGAAGATT+GGG - chr4_1:50820879-50820898 Msa0553560:intron 30.0%
TGAGAATATTCATACCACAT+CGG + chr4_1:50821078-50821097 None:intergenic 30.0%
GTAGTAACTATAACTAAGCA+AGG + chr4_1:50821130-50821149 None:intergenic 30.0%
TACTACATGTTGTCTTATGA+CGG - chr4_1:50821144-50821163 Msa0553560:intron 30.0%
AACATGTCAAAAATAGTCTG+GGG + chr4_1:50821245-50821264 None:intergenic 30.0%
GAAACATGTCAAAAATAGTC+TGG + chr4_1:50821247-50821266 None:intergenic 30.0%
!!! TTTTTTTCTTCGATTTCCTC+TGG - chr4_1:50821329-50821348 Msa0553560:intron 30.0%
!!! GGAGAAATTGACAGTTTTTT+TGG - chr4_1:50821449-50821468 Msa0553560:intron 30.0%
!! ATAGTAGCATCAGAAGTATT+TGG + chr4_1:50821510-50821529 None:intergenic 30.0%
AAGAATACTACATTTCTCTG+TGG - chr4_1:50821567-50821586 Msa0553560:intron 30.0%
ACCATGTGAAAGTAAGATAT+GGG + chr4_1:50821904-50821923 None:intergenic 30.0%
AACCATGTGAAAGTAAGATA+TGG + chr4_1:50821905-50821924 None:intergenic 30.0%
CGTAAGTAAATACTACCATT+AGG + chr4_1:50821953-50821972 None:intergenic 30.0%
TATTCTTTCTTGCAAAGAGT+TGG - chr4_1:50822016-50822035 Msa0553560:CDS 30.0%
AGTTCTCATTTGCCTAATTA+TGG - chr4_1:50822192-50822211 Msa0553560:intron 30.0%
TTACCTTTAAATCATGGCTT+TGG - chr4_1:50822378-50822397 Msa0553560:intron 30.0%
!!! CCCATAATTTTAAGGTTAAC+AGG + chr4_1:50822489-50822508 None:intergenic 30.0%
GTATTGTTGAAATTCTAGCA+TGG - chr4_1:50822533-50822552 Msa0553560:intron 30.0%
ATGGTTAAGTTTAATTCAGC+TGG - chr4_1:50822681-50822700 Msa0553560:intron 30.0%
TGGTTAAGTTTAATTCAGCT+GGG - chr4_1:50822682-50822701 Msa0553560:intron 30.0%
CAATGAATGCAAATAACACT+CGG + chr4_1:50822968-50822987 None:intergenic 30.0%
AAATGTAAGTGGAATCAACT+AGG - chr4_1:50822992-50823011 Msa0553560:intron 30.0%
! TTTGCATTTTGCTTTCATTC+AGG - chr4_1:50823029-50823048 Msa0553560:intron 30.0%
!! ATTTTGCTTTCATTCAGGTT+GGG - chr4_1:50823034-50823053 Msa0553560:intron 30.0%
! CACATTATTCTTTTTACCTG+AGG + chr4_1:50823188-50823207 None:intergenic 30.0%
!!! ACCATTAGTGAGATTTTTTG+AGG - chr4_1:50823211-50823230 Msa0553560:intron 30.0%
! ATCTTTTATCACATCATGCA+TGG - chr4_1:50823360-50823379 Msa0553560:intron 30.0%
! AAAAATCTGATTTGCCTGAT+AGG - chr4_1:50823455-50823474 Msa0553560:intron 30.0%
CAATAATTCCAGAAAGAACT+TGG + chr4_1:50823483-50823502 None:intergenic 30.0%
!! TTTCTGGAATTATTGAACAG+AGG - chr4_1:50823488-50823507 Msa0553560:intron 30.0%
! AATTATTGAACAGAGGCTTT+TGG - chr4_1:50823495-50823514 Msa0553560:intron 30.0%
! TATGATTTTGCCTTTACAGA+TGG - chr4_1:50823674-50823693 Msa0553560:CDS 30.0%
! ATGATTTTGCCTTTACAGAT+GGG - chr4_1:50823675-50823694 Msa0553560:CDS 30.0%
!! CCAAGTCATTATCTTTGTTT+TGG + chr4_1:50823735-50823754 None:intergenic 30.0%
CCAAAACAAAGATAATGACT+TGG - chr4_1:50823732-50823751 Msa0553560:intron 30.0%
GACATCAGAGAACAAATTAA+CGG - chr4_1:50823808-50823827 Msa0553560:CDS 30.0%
GAGAATGAGAAGAAAGAGAA+TGG + chr4_1:50819711-50819730 None:intergenic 35.0%
!! GATGACGGAAAAAACAATGA+CGG - chr4_1:50819916-50819935 Msa0553560:three_prime_UTR 35.0%
TATCAAGGAAGGTAAGATTC+CGG - chr4_1:50820074-50820093 Msa0553560:three_prime_UTR 35.0%
! GATCTTTTTCTTGCTAAGGT+TGG - chr4_1:50820192-50820211 Msa0553560:intron 35.0%
ATGAAGCAGATTGAGATTTG+GGG - chr4_1:50820596-50820615 Msa0553560:intron 35.0%
CATCGAAAAATTTCTCTCTC+CGG + chr4_1:50821037-50821056 None:intergenic 35.0%
!! AGAGAAATTTTTCGATGAGC+TGG - chr4_1:50821040-50821059 Msa0553560:intron 35.0%
AACTAAGCAAGGAAATTCAC+AGG + chr4_1:50821119-50821138 None:intergenic 35.0%
TTGACTAGAACTTGAGACAT+CGG - chr4_1:50821296-50821315 Msa0553560:intron 35.0%
!! GTATTTGTTGTCACTTCTTC+TGG - chr4_1:50821361-50821380 Msa0553560:intron 35.0%
AAACGATAGCATGTACAAAG+TGG + chr4_1:50821664-50821683 None:intergenic 35.0%
GACTACAATACATGTTTCAC+AGG + chr4_1:50821703-50821722 None:intergenic 35.0%
CAATGCAATAGGGATGTTAT+GGG + chr4_1:50821730-50821749 None:intergenic 35.0%
ACAATGCAATAGGGATGTTA+TGG + chr4_1:50821731-50821750 None:intergenic 35.0%
AGTTTATTTACCTGCACCTA+CGG - chr4_1:50821786-50821805 Msa0553560:CDS 35.0%
ATATGGGATATATCAAGACC+TGG + chr4_1:50821888-50821907 None:intergenic 35.0%
TCCCATATCTTACTTTCACA+TGG - chr4_1:50821900-50821919 Msa0553560:intron 35.0%
CATTCTTAATTTCCTTCCAC+AGG - chr4_1:50821973-50821992 Msa0553560:CDS 35.0%
CCACAGGAAACTAAAAAGAA+AGG + chr4_1:50822082-50822101 None:intergenic 35.0%
!!! CCTTTCTTTTTAGTTTCCTG+TGG - chr4_1:50822079-50822098 Msa0553560:intron 35.0%
!! AGCACAAGAGTACCATAATT+AGG + chr4_1:50822207-50822226 None:intergenic 35.0%
ATAAGAGTAATGTGAAGAGC+AGG + chr4_1:50822272-50822291 None:intergenic 35.0%
CATTACTCTTATGAGCACTT+CGG - chr4_1:50822280-50822299 Msa0553560:intron 35.0%
!! ACTCTGCTTAACTTGTGTTT+CGG + chr4_1:50822318-50822337 None:intergenic 35.0%
GAACCAAAGCCATGATTTAA+AGG + chr4_1:50822384-50822403 None:intergenic 35.0%
CGTCTCAAGATTTGTATTGT+TGG + chr4_1:50822432-50822451 None:intergenic 35.0%
!! CTCTCTACAAGTTTGTTGTA+TGG - chr4_1:50822662-50822681 Msa0553560:intron 35.0%
TTAAGTTTAATTCAGCTGGG+TGG - chr4_1:50822685-50822704 Msa0553560:intron 35.0%
TAAGTTTAATTCAGCTGGGT+GGG - chr4_1:50822686-50822705 Msa0553560:intron 35.0%
AAAGCCTAAATCTTGGTCAT+TGG - chr4_1:50822742-50822761 Msa0553560:intron 35.0%
TCTGAAGAACAAGATAGTGA+AGG - chr4_1:50822878-50822897 Msa0553560:intron 35.0%
CTGAAGAACAAGATAGTGAA+GGG - chr4_1:50822879-50822898 Msa0553560:intron 35.0%
! CATTTTGCTTTCATTCAGGT+TGG - chr4_1:50823033-50823052 Msa0553560:intron 35.0%
AGCCTTCTTTGCATTAATTG+CGG + chr4_1:50823076-50823095 None:intergenic 35.0%
TGCAAAGAAGGCTGTTAATA+AGG - chr4_1:50823083-50823102 Msa0553560:intron 35.0%
! TGCTGCTTATGGTGTTTATA+TGG - chr4_1:50823149-50823168 Msa0553560:intron 35.0%
GCCTCAAAAAATCTCACTAA+TGG + chr4_1:50823215-50823234 None:intergenic 35.0%
! ATGACTTGGATCTTTCTTGA+CGG - chr4_1:50823746-50823765 Msa0553560:intron 35.0%
TCTCTGATGTCAAGTAATGA+AGG + chr4_1:50823799-50823818 None:intergenic 35.0%
! ATAAGAATAAGCAGAGTGCT+CGG + chr4_1:50823887-50823906 None:intergenic 35.0%
CTCGTAACATCAATTGAATG+AGG + chr4_1:50823925-50823944 None:intergenic 35.0%
CTCATTCAATTGATGTTACG+AGG - chr4_1:50823923-50823942 Msa0553560:CDS 35.0%
GAAGAAAGAGAATGGGAAGA+AGG + chr4_1:50819703-50819722 None:intergenic 40.0%
GAAAAAGAAGGGAGGGATTT+AGG + chr4_1:50819742-50819761 None:intergenic 40.0%
AGGGAAAGAAAAAGAAGGGA+GGG + chr4_1:50819749-50819768 None:intergenic 40.0%
GTGGAGGGAAAGAAAAAGAA+GGG + chr4_1:50819753-50819772 None:intergenic 40.0%
AGTGGAGGGAAAGAAAAAGA+AGG + chr4_1:50819754-50819773 None:intergenic 40.0%
TTGATACGGAAAGAAGGAGA+AGG + chr4_1:50819805-50819824 None:intergenic 40.0%
!! GGAAAAAACAATGACGGACA+TGG - chr4_1:50819922-50819941 Msa0553560:three_prime_UTR 40.0%
TGACTTAGCTTCTGCTATCA+AGG - chr4_1:50820059-50820078 Msa0553560:three_prime_UTR 40.0%
TTAGCTTCTGCTATCAAGGA+AGG - chr4_1:50820063-50820082 Msa0553560:three_prime_UTR 40.0%
! GTCTGTAGTTGAGAGGTTTT+TGG - chr4_1:50820098-50820117 Msa0553560:exon 40.0%
TGAAGCAACCATCGCATAAA+CGG + chr4_1:50820138-50820157 None:intergenic 40.0%
!! GCTTCAGTTTGGTGGTTTTA+AGG - chr4_1:50820152-50820171 Msa0553560:intron 40.0%
GCTAAGGTTGGATTTGAATG+CGG - chr4_1:50820204-50820223 Msa0553560:intron 40.0%
AAACTAAGACTCTGCTATGG+TGG + chr4_1:50820500-50820519 None:intergenic 40.0%
AGCAAACTAAGACTCTGCTA+TGG + chr4_1:50820503-50820522 None:intergenic 40.0%
AATAGCATTGCACTGCAGTT+GGG + chr4_1:50820721-50820740 None:intergenic 40.0%
CTACTGCATCAGCAATATTG+TGG - chr4_1:50820748-50820767 Msa0553560:CDS 40.0%
! AGGCAATTTGAAACCATGGA+GGG - chr4_1:50820771-50820790 Msa0553560:intron 40.0%
CAAACTATTCAATCCCTCCA+TGG + chr4_1:50820787-50820806 None:intergenic 40.0%
! TAGAACTTGAGACATCGGTT+GGG - chr4_1:50821301-50821320 Msa0553560:intron 40.0%
CAAATACGACATACAACCAG+AGG + chr4_1:50821348-50821367 None:intergenic 40.0%
ATCCCTATTGCATTGTTCTC+AGG - chr4_1:50821735-50821754 Msa0553560:intron 40.0%
GACCTGAGAACAATGCAATA+GGG + chr4_1:50821740-50821759 None:intergenic 40.0%
TGACCTGAGAACAATGCAAT+AGG + chr4_1:50821741-50821760 None:intergenic 40.0%
ATTGCATTGTTCTCAGGTCA+TGG - chr4_1:50821741-50821760 Msa0553560:intron 40.0%
AGACCTGGAATGCATTATCT+GGG + chr4_1:50821873-50821892 None:intergenic 40.0%
AAGACCTGGAATGCATTATC+TGG + chr4_1:50821874-50821893 None:intergenic 40.0%
AACAATTAGTCACTAGCCAC+AGG + chr4_1:50822098-50822117 None:intergenic 40.0%
AGATCCAACTGCAAAAAGCT+TGG + chr4_1:50822157-50822176 None:intergenic 40.0%
TATGGTACTCTTGTGCTTTG+TGG - chr4_1:50822210-50822229 Msa0553560:intron 40.0%
! CAGAGTCATGATTTTGCAGT+GGG - chr4_1:50822332-50822351 Msa0553560:intron 40.0%
! AGAGTCATGATTTTGCAGTG+GGG - chr4_1:50822333-50822352 Msa0553560:intron 40.0%
AGTAGGCTGTTTGAATGCTA+TGG - chr4_1:50822580-50822599 Msa0553560:intron 40.0%
GTAGGCTGTTTGAATGCTAT+GGG - chr4_1:50822581-50822600 Msa0553560:intron 40.0%
CAAGCCAATGACCAAGATTT+AGG + chr4_1:50822749-50822768 None:intergenic 40.0%
TGCCGCAATTAATGCAAAGA+AGG - chr4_1:50823071-50823090 Msa0553560:intron 40.0%
TGTTAATAAGGACTCTGCAG+AGG - chr4_1:50823095-50823114 Msa0553560:intron 40.0%
!! GCAGCACTGGTAGAAAATAT+GGG + chr4_1:50823135-50823154 None:intergenic 40.0%
!! AGCAGCACTGGTAGAAAATA+TGG + chr4_1:50823136-50823155 None:intergenic 40.0%
!!! TTTTCTACCAGTGCTGCTTA+TGG - chr4_1:50823138-50823157 Msa0553560:intron 40.0%
ATAAACACCATAAGCAGCAC+TGG + chr4_1:50823148-50823167 None:intergenic 40.0%
ATGCTTCGGTCAACTAATGT+TGG - chr4_1:50823252-50823271 Msa0553560:intron 40.0%
GAAAGAACTTGGTACCTATC+AGG + chr4_1:50823472-50823491 None:intergenic 40.0%
GATAGGTACCAAGTTCTTTC+TGG - chr4_1:50823472-50823491 Msa0553560:intron 40.0%
TGAACCCAAATACGTATTGC+CGG + chr4_1:50823578-50823597 None:intergenic 40.0%
! ATTTTGCCTTTACAGATGGG+TGG - chr4_1:50823678-50823697 Msa0553560:CDS 40.0%
CATAATCCACCCATCTGTAA+AGG + chr4_1:50823687-50823706 None:intergenic 40.0%
TGGATTATGCACGTTGGATA+GGG - chr4_1:50823698-50823717 Msa0553560:CDS 40.0%
GAAAGAGAATGGGAAGAAGG+AGG + chr4_1:50819700-50819719 None:intergenic 45.0%
GAGGGAAAGAAAAAGAAGGG+AGG + chr4_1:50819750-50819769 None:intergenic 45.0%
GAGAAGGAGAAGGAGTGATA+CGG + chr4_1:50819789-50819808 None:intergenic 45.0%
GAATGAAGAGAGGATCTGTG+CGG + chr4_1:50819831-50819850 None:intergenic 45.0%
GTGGAATGGAGAATGAAGAG+AGG + chr4_1:50819841-50819860 None:intergenic 45.0%
TTCGACGGAGGAGATTCATT+CGG - chr4_1:50819880-50819899 Msa0553560:three_prime_UTR 45.0%
!! AACAATGACGGACATGGACA+TGG - chr4_1:50819928-50819947 Msa0553560:three_prime_UTR 45.0%
!! GAATGAGGCGTTGTTGTTGT+TGG - chr4_1:50820002-50820021 Msa0553560:three_prime_UTR 45.0%
ATAGCAGAAGCTAAGTCAGC+CGG + chr4_1:50820057-50820076 None:intergenic 45.0%
AGAAGTCTCCGTTTATGCGA+TGG - chr4_1:50820127-50820146 Msa0553560:intron 45.0%
ATGCGATGGTTGCTTCAGTT+TGG - chr4_1:50820141-50820160 Msa0553560:intron 45.0%
GTCTATTGCGTTTCCTGATG+TGG - chr4_1:50820670-50820689 Msa0553560:CDS 45.0%
AACACATGTACGACCACATC+AGG + chr4_1:50820686-50820705 None:intergenic 45.0%
ATAGCATTGCACTGCAGTTG+GGG + chr4_1:50820720-50820739 None:intergenic 45.0%
CAATAGCATTGCACTGCAGT+TGG + chr4_1:50820722-50820741 None:intergenic 45.0%
GCAGTGCAATGCTATTGCAA+AGG - chr4_1:50820725-50820744 Msa0553560:CDS 45.0%
CTGCATCAGCAATATTGTGG+AGG - chr4_1:50820751-50820770 Msa0553560:CDS 45.0%
! GTGGAGGCAATTTGAAACCA+TGG - chr4_1:50820767-50820786 Msa0553560:intron 45.0%
! GAGGCAATTTGAAACCATGG+AGG - chr4_1:50820770-50820789 Msa0553560:intron 45.0%
TCATACTCAGCAGCAGTCTA+GGG + chr4_1:50821011-50821030 None:intergenic 45.0%
ATCATACTCAGCAGCAGTCT+AGG + chr4_1:50821012-50821031 None:intergenic 45.0%
TGCCGTACACTGATGTTCTT+TGG - chr4_1:50821175-50821194 Msa0553560:intron 45.0%
GCCGTACACTGATGTTCTTT+GGG - chr4_1:50821176-50821195 Msa0553560:intron 45.0%
CCCCAAAGAACATCAGTGTA+CGG + chr4_1:50821180-50821199 None:intergenic 45.0%
CCGTACACTGATGTTCTTTG+GGG - chr4_1:50821177-50821196 Msa0553560:intron 45.0%
CTAGAACTTGAGACATCGGT+TGG - chr4_1:50821300-50821319 Msa0553560:intron 45.0%
GTTTCTCTTAGACCACCACT+TGG - chr4_1:50821808-50821827 Msa0553560:CDS 45.0%
ATGCATTATCTGGGCAGTTG+TGG + chr4_1:50821864-50821883 None:intergenic 45.0%
!! GCAAAGAGTTGGTGCAATTG+TGG - chr4_1:50822027-50822046 Msa0553560:CDS 45.0%
GTTACCTTGCACAGCGTAAT+GGG - chr4_1:50822130-50822149 Msa0553560:intron 45.0%
! GCAGAGTCATGATTTTGCAG+TGG - chr4_1:50822331-50822350 Msa0553560:intron 45.0%
!! ATCATGGCTTTGGTTCTAGC+CGG - chr4_1:50822388-50822407 Msa0553560:intron 45.0%
GCACTGCATCATAGACAAAC+TGG + chr4_1:50822722-50822741 None:intergenic 45.0%
GCAGTGCAAAGCCTAAATCT+TGG - chr4_1:50822735-50822754 Msa0553560:intron 45.0%
CACTAAGTACAAGCTTGTGC+TGG + chr4_1:50823534-50823553 None:intergenic 45.0%
!! CTTTGCTTTGCTGTTCGAAC+CGG - chr4_1:50823556-50823575 Msa0553560:intron 45.0%
TCGAACCGGCAATACGTATT+TGG - chr4_1:50823570-50823589 Msa0553560:intron 45.0%
CGAACCGGCAATACGTATTT+GGG - chr4_1:50823571-50823590 Msa0553560:intron 45.0%
! GTGGATTATGCACGTTGGAT+AGG - chr4_1:50823697-50823716 Msa0553560:CDS 45.0%
GGATTATGCACGTTGGATAG+GGG - chr4_1:50823699-50823718 Msa0553560:CDS 45.0%
! GGGTTTCAGGTCAAAAACAC+AGG + chr4_1:50824073-50824092 None:intergenic 45.0%
TCATGCTAGAGCAAGGAATG+GGG + chr4_1:50824098-50824117 None:intergenic 45.0%
CTCATGCTAGAGCAAGGAAT+GGG + chr4_1:50824099-50824118 None:intergenic 45.0%
TCTCATGCTAGAGCAAGGAA+TGG + chr4_1:50824100-50824119 None:intergenic 45.0%
!!! TTTTTATTTTTTTTTACTTT+TGG - chr4_1:50823306-50823325 Msa0553560:intron 5.0%
ATGGGAAGAAGGAGGAACGA+AGG + chr4_1:50819692-50819711 None:intergenic 50.0%
AGAAGGGAGGGATTTAGGAG+TGG + chr4_1:50819737-50819756 None:intergenic 50.0%
GAGAAGGAGTGATACGGAGA+CGG + chr4_1:50819783-50819802 None:intergenic 50.0%
CGGAAAGAAGGAGAAGGAGA+AGG + chr4_1:50819799-50819818 None:intergenic 50.0%
! CGGTGGTTGATACGGAAAGA+AGG + chr4_1:50819811-50819830 None:intergenic 50.0%
! GATCTGTGCGGTGGTTGATA+CGG + chr4_1:50819819-50819838 None:intergenic 50.0%
! GAAAGAAGGTACGGCGGAAT+CGG + chr4_1:50819863-50819882 None:intergenic 50.0%
TCCTCCGTCGAAAGAAGGTA+CGG + chr4_1:50819872-50819891 None:intergenic 50.0%
GAATCTCCTCCGTCGAAAGA+AGG + chr4_1:50819877-50819896 None:intergenic 50.0%
GGAGATTCATTCGGAGGACA+CGG - chr4_1:50819889-50819908 Msa0553560:three_prime_UTR 50.0%
!! AATGACGGACATGGACATGG+AGG - chr4_1:50819931-50819950 Msa0553560:three_prime_UTR 50.0%
GGAGACGGAGAAAGCAATGA+CGG - chr4_1:50819961-50819980 Msa0553560:three_prime_UTR 50.0%
! AGCAATGACGGAGGAAAGAG+CGG - chr4_1:50819973-50819992 Msa0553560:three_prime_UTR 50.0%
!! AAAGAGCGGCGGATTGAATG+AGG - chr4_1:50819987-50820006 Msa0553560:three_prime_UTR 50.0%
! GTTGTTGTTGTTGGCGCAAG+CGG - chr4_1:50820011-50820030 Msa0553560:three_prime_UTR 50.0%
! TTGTTGTTGTTGGCGCAAGC+GGG - chr4_1:50820012-50820031 Msa0553560:three_prime_UTR 50.0%
AACCTCTCAACTACAGACGC+CGG + chr4_1:50820096-50820115 None:intergenic 50.0%
CGATGGTTGCTTCAGTTTGG+TGG - chr4_1:50820144-50820163 Msa0553560:intron 50.0%
GTTGGATTTGAATGCGGCGT+CGG - chr4_1:50820210-50820229 Msa0553560:intron 50.0%
ATACTCAGCAGCAGTCTAGG+GGG + chr4_1:50821009-50821028 None:intergenic 50.0%
CATACTCAGCAGCAGTCTAG+GGG + chr4_1:50821010-50821029 None:intergenic 50.0%
GGAAATTGTGTTCGCCGATG+TGG - chr4_1:50821061-50821080 Msa0553560:intron 50.0%
CTAAGAGAAACCGTAGGTGC+AGG + chr4_1:50821799-50821818 None:intergenic 50.0%
GGTGGTCTAAGAGAAACCGT+AGG + chr4_1:50821805-50821824 None:intergenic 50.0%
CTGCCCAGATAATGCATTCC+AGG - chr4_1:50821867-50821886 Msa0553560:intron 50.0%
GGTTACCTTGCACAGCGTAA+TGG - chr4_1:50822129-50822148 Msa0553560:intron 50.0%
! GGGTCCAAGCTTTTTGCAGT+TGG - chr4_1:50822150-50822169 Msa0553560:intron 50.0%
AGTTGGATCTGCTTCGTCAC+TGG - chr4_1:50822167-50822186 Msa0553560:intron 50.0%
!! TGGCAGTTTCTAGCAACCTC+AGG - chr4_1:50823169-50823188 Msa0553560:intron 50.0%
! AGCTTGTGCTGGTGCAACAA+AGG + chr4_1:50823523-50823542 None:intergenic 50.0%
!! GATGGGTGGATTATGCACGT+TGG - chr4_1:50823692-50823711 Msa0553560:CDS 50.0%
! AAGGAATGGGGATGGGTTTC+AGG + chr4_1:50824086-50824105 None:intergenic 50.0%
CTAGAGCAAGGAATGGGGAT+GGG + chr4_1:50824093-50824112 None:intergenic 50.0%
CTGCATCTCATGCTAGAGCA+AGG + chr4_1:50824105-50824124 None:intergenic 50.0%
CTTGCTCTAGCATGAGATGC+AGG - chr4_1:50824103-50824122 Msa0553560:CDS 50.0%
GGGAGGGATTTAGGAGTGGA+AGG + chr4_1:50819733-50819752 None:intergenic 55.0%
ATACGGAGACGGAGGGAAAG+TGG + chr4_1:50819772-50819791 None:intergenic 55.0%
AGGAGTGATACGGAGACGGA+GGG + chr4_1:50819779-50819798 None:intergenic 55.0%
AAGGAGTGATACGGAGACGG+AGG + chr4_1:50819780-50819799 None:intergenic 55.0%
TGAAGAGAGGATCTGTGCGG+TGG + chr4_1:50819828-50819847 None:intergenic 55.0%
TCCGCCGTACCTTCTTTCGA+CGG - chr4_1:50819865-50819884 Msa0553560:three_prime_UTR 55.0%
! TCCGTCGAAAGAAGGTACGG+CGG + chr4_1:50819869-50819888 None:intergenic 55.0%
GACGGAGGAGATTCATTCGG+AGG - chr4_1:50819883-50819902 Msa0553560:three_prime_UTR 55.0%
GATTCATTCGGAGGACACGG+TGG - chr4_1:50819892-50819911 Msa0553560:three_prime_UTR 55.0%
GGACATGGACATGGAGGACA+CGG - chr4_1:50819937-50819956 Msa0553560:three_prime_UTR 55.0%
GACGGAGAAAGCAATGACGG+AGG - chr4_1:50819964-50819983 Msa0553560:three_prime_UTR 55.0%
! AATGACGGAGGAAAGAGCGG+CGG - chr4_1:50819976-50819995 Msa0553560:three_prime_UTR 55.0%
! TGTTGTTGTTGGCGCAAGCG+GGG - chr4_1:50820013-50820032 Msa0553560:three_prime_UTR 55.0%
TTCCGGCGTCTGTAGTTGAG+AGG - chr4_1:50820091-50820110 Msa0553560:exon 55.0%
CTGCTGCTGAGTATGATCGC+CGG - chr4_1:50821015-50821034 Msa0553560:intron 55.0%
CACCACTTGGAGTCAGTGCA+GGG - chr4_1:50821821-50821840 Msa0553560:intron 55.0%
ACCACTTGGAGTCAGTGCAG+GGG - chr4_1:50821822-50821841 Msa0553560:intron 55.0%
CAGAGAGAGCAACCTGTGGA+AGG + chr4_1:50821988-50822007 None:intergenic 55.0%
CTTCCACAGGTTGCTCTCTC+TGG - chr4_1:50821986-50822005 Msa0553560:CDS 55.0%
GATCCAGAGAGAGCAACCTG+TGG + chr4_1:50821992-50822011 None:intergenic 55.0%
TGGACCCATTACGCTGTGCA+AGG + chr4_1:50822137-50822156 None:intergenic 55.0%
GCTAGAGCAAGGAATGGGGA+TGG + chr4_1:50824094-50824113 None:intergenic 55.0%
GGAGACGGAGGGAAAGTGGA+GGG + chr4_1:50819768-50819787 None:intergenic 60.0%
GTACGGCGGAATCGGTGGAA+TGG + chr4_1:50819855-50819874 None:intergenic 60.0%
! AGAAGGTACGGCGGAATCGG+TGG + chr4_1:50819860-50819879 None:intergenic 60.0%
GCCGTACCTTCTTTCGACGG+AGG - chr4_1:50819868-50819887 Msa0553560:three_prime_UTR 60.0%
GGAGGACACGGTGGAGATGA+CGG - chr4_1:50819901-50819920 Msa0553560:three_prime_UTR 60.0%
CATGGACATGGAGGACACGG+TGG - chr4_1:50819940-50819959 Msa0553560:three_prime_UTR 60.0%
CATGGAGGACACGGTGGAGA+CGG - chr4_1:50819946-50819965 Msa0553560:three_prime_UTR 60.0%
! GAGGTCGTTGGAGAGTGTGC+CGG - chr4_1:50820035-50820054 Msa0553560:three_prime_UTR 60.0%
TGCGGATGCGAAGCGCATTG+TGG - chr4_1:50820407-50820426 Msa0553560:intron 60.0%
!! CCTGCACTGACTCCAAGTGG+TGG + chr4_1:50821823-50821842 None:intergenic 60.0%
CCACCACTTGGAGTCAGTGC+AGG - chr4_1:50821820-50821839 Msa0553560:intron 60.0%
CGGAGACGGAGGGAAAGTGG+AGG + chr4_1:50819769-50819788 None:intergenic 65.0%
TGTTGTTGGCGCAAGCGGGG+AGG - chr4_1:50820016-50820035 Msa0553560:three_prime_UTR 65.0%
!! GCCCCTGCACTGACTCCAAG+TGG + chr4_1:50821826-50821845 None:intergenic 65.0%
!! CGGCGTCGGCGTCTTCACCA+AGG - chr4_1:50820224-50820243 Msa0553560:intron 70.0%
GGCGCAAGCGGGGAGGTCGT+TGG - chr4_1:50820023-50820042 Msa0553560:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 50819670 50824163 50819670 ID=Msa0553560;Name=Msa0553560
chr4_1 mRNA 50819670 50824163 50819670 ID=Msa0553560-mRNA-1;Parent=Msa0553560;Name=Msa0553560-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0.66|0.6|1|0.55|0.6|10|434|368
chr4_1 exon 50819670 50820140 50819670 ID=Msa0553560-mRNA-1:exon:14412;Parent=Msa0553560-mRNA-1
chr4_1 exon 50820249 50820356 50820249 ID=Msa0553560-mRNA-1:exon:14411;Parent=Msa0553560-mRNA-1
chr4_1 exon 50820643 50820782 50820643 ID=Msa0553560-mRNA-1:exon:14410;Parent=Msa0553560-mRNA-1
chr4_1 exon 50821645 50821689 50821645 ID=Msa0553560-mRNA-1:exon:14409;Parent=Msa0553560-mRNA-1
chr4_1 exon 50821785 50821838 50821785 ID=Msa0553560-mRNA-1:exon:14408;Parent=Msa0553560-mRNA-1
chr4_1 exon 50821945 50822076 50821945 ID=Msa0553560-mRNA-1:exon:14407;Parent=Msa0553560-mRNA-1
chr4_1 exon 50822751 50822819 50822751 ID=Msa0553560-mRNA-1:exon:14406;Parent=Msa0553560-mRNA-1
chr4_1 exon 50823588 50823748 50823588 ID=Msa0553560-mRNA-1:exon:14405;Parent=Msa0553560-mRNA-1
chr4_1 exon 50823785 50823997 50823785 ID=Msa0553560-mRNA-1:exon:14404;Parent=Msa0553560-mRNA-1
chr4_1 exon 50824016 50824163 50824016 ID=Msa0553560-mRNA-1:exon:14403;Parent=Msa0553560-mRNA-1
chr4_1 CDS 50824016 50824163 50824016 ID=Msa0553560-mRNA-1:cds;Parent=Msa0553560-mRNA-1
chr4_1 CDS 50823785 50823997 50823785 ID=Msa0553560-mRNA-1:cds;Parent=Msa0553560-mRNA-1
chr4_1 CDS 50823588 50823748 50823588 ID=Msa0553560-mRNA-1:cds;Parent=Msa0553560-mRNA-1
chr4_1 CDS 50822751 50822819 50822751 ID=Msa0553560-mRNA-1:cds;Parent=Msa0553560-mRNA-1
chr4_1 CDS 50821945 50822076 50821945 ID=Msa0553560-mRNA-1:cds;Parent=Msa0553560-mRNA-1
chr4_1 CDS 50821785 50821838 50821785 ID=Msa0553560-mRNA-1:cds;Parent=Msa0553560-mRNA-1
chr4_1 CDS 50821645 50821689 50821645 ID=Msa0553560-mRNA-1:cds;Parent=Msa0553560-mRNA-1
chr4_1 CDS 50820643 50820782 50820643 ID=Msa0553560-mRNA-1:cds;Parent=Msa0553560-mRNA-1
chr4_1 CDS 50820249 50820356 50820249 ID=Msa0553560-mRNA-1:cds;Parent=Msa0553560-mRNA-1
chr4_1 CDS 50820104 50820140 50820104 ID=Msa0553560-mRNA-1:cds;Parent=Msa0553560-mRNA-1
chr4_1 three_prime_UTR 50819670 50820103 50819670 ID=Msa0553560-mRNA-1:three_prime_utr;Parent=Msa0553560-mRNA-1
Gene Sequence

>Msa0553560

ATGTCGTCGATCGCTTTTTCCTTCGTTCCTCCTTCTTCCCATTCTCTTTCTTCTCATTCTCCTTCCACTCCTAAATCCCTCCCTTCTTTTTCTTTCCCTCCACTTTCCCTCCGTCTCCGTATCACTCCTTCTCCTTCTCCTTCTTTCCATCCTCTCTTCATTCTCCATTCCACCGATTCCGCCGTACCTTCTTTCGACGGAGGAGATTCATTCGGAGGACACGGTGGAGATGACGGAAAAAACAATGACGGACATGGACATGGAGGACACGGTGGAGACGGAGAAAGCAATGACGGAGGAAAGAGCGGCGGATTGAATGAGGCGTTGTTGTTGTTGGCGCAAGCGGGGAGGTCGTTGGAGAGTAAGATTCCGGCGTCTGTAGTTGAGAGGTTTTTGGAGCTTGAGAAGTCTCCGTTTATGCGATGGTTGCTTCAGTTTGGTGGTTTTAAGGAACGTCTTCTTGCTGATGATCTTTTTCTTGCTAAGGTTGGATTTGAATGCGGCGTCGGCGTCTTCACCAAGACTGCTGCTGAGTATGATCGCCGGAGAGAGAAATTTTTCGATGAGCTGGAAATTGTGTTCGCCGATGTGGTCATGGCTATAATCGCAGATTTCATGCTAGTTTATTTACCTGCACCTACGGTTTCTCTTAGACCACCACTTGGAGTCAGTGCAGGGGCTATTACTAAGTTTTTCCACAACTGCCCAGATAATGCATTCCAGGTTGCTCTCTCTGGATCATCATATTCTTTCTTGCAAAGAGTTGGTGCAATTGTGCGTAATGGGTCCAAGCTTTTTGCAGTTGGATCTGCTTCGTCACTGGTTGGGACAGTTGTGACTAATGCCGCAATTAATGCAAAGAAGGCTGTTAATAAGGACTCTGCAGAGGAAATTGAAAATGTTCCCATATTTTCTACCAGTGCTGCTTATGGTGTTTATATGGCAGTTTCTAGCAACCTCAGGTACCAAGTTCTTTCTGGAATTATTGAACAGAGGCTTTTGGAACCTTTGTTGCACCAGCACAAGCTTGTACTTAGTGCTCTTTGCTTTGCTGTTCGAACCGGCAATACATGGGTGGATTATGCACGTTGGATAGGGGTTCAGTAG
Protein sequence

>Msa0553560

MSSIAFSFVPPSSHSLSSHSPSTPKSLPSFSFPPLSLRLRITPSPSPSFHPLFILHSTDSAVPSFDGGDSFGGHGGDDGKNNDGHGHGGHGGDGESNDGGKSGGLNEALLLLAQAGRSLESKIPASVVERFLELEKSPFMRWLLQFGGFKERLLADDLFLAKVGFECGVGVFTKTAAEYDRRREKFFDELEIVFADVVMAIIADFMLVYLPAPTVSLRPPLGVSAGAITKFFHNCPDNAFQVALSGSSYSFLQRVGAIVRNGSKLFAVGSASSLVGTVVTNAAINAKKAVNKDSAEEIENVPIFSTSAAYGVYMAVSSNLRYQVLSGIIEQRLLEPLLHQHKLVLSALCFAVRTGNTWVDYARWIGVQ*