AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0573090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0573090 MtrunA17_Chr8g0388761 99.402 669 4 0 1 669 1 669 0.0 1346
Msa0573090 MtrunA17_Chr8g0388671 96.285 646 23 1 1 646 2 646 0.0 1232
Msa0573090 MtrunA17_Chr7g0262821 64.921 630 214 5 36 661 7 633 0.0 837
Msa0573090 MtrunA17_Chr4g0031321 64.263 638 211 5 36 658 7 642 0.0 831
Msa0573090 MtrunA17_Chr4g0031301 65.961 614 203 4 36 645 7 618 0.0 829
Msa0573090 MtrunA17_Chr7g0223181 65.472 614 206 4 36 645 7 618 0.0 828
Msa0573090 MtrunA17_Chr7g0223291 64.038 634 215 5 36 665 7 631 0.0 827
Msa0573090 MtrunA17_Chr4g0073741 64.423 624 214 5 33 652 3 622 0.0 823
Msa0573090 MtrunA17_Chr2g0284681 55.155 611 248 6 33 633 3 597 0.0 670
Msa0573090 MtrunA17_Chr6g0462601 54.125 606 271 5 39 640 10 612 0.0 662
Msa0573090 MtrunA17_Chr6g0462681 53.542 607 275 5 39 641 10 613 0.0 652
Msa0573090 MtrunA17_Chr7g0223751 54.125 606 267 8 36 635 7 607 0.0 647
Msa0573090 MtrunA17_Chr7g0221661 54.486 613 269 7 36 642 7 615 0.0 640
Msa0573090 MtrunA17_Chr2g0298851 55.628 613 259 9 36 640 7 614 0.0 639
Msa0573090 MtrunA17_Chr7g0233311 53.268 612 276 7 36 640 7 615 0.0 636
Msa0573090 MtrunA17_Chr7g0223741 54.223 592 261 7 36 621 7 594 0.0 632
Msa0573090 MtrunA17_Chr5g0427901 52.006 623 278 8 36 641 7 625 0.0 630
Msa0573090 MtrunA17_Chr2g0293581 53.431 612 275 7 36 640 8 616 0.0 630
Msa0573090 MtrunA17_Chr6g0462771 51.535 619 288 6 39 648 10 625 0.0 622
Msa0573090 MtrunA17_Chr7g0223731 52.815 604 274 8 36 633 7 605 0.0 622
Msa0573090 MtrunA17_Chr6g0462641 50.889 619 292 6 39 648 10 625 0.0 621
Msa0573090 MtrunA17_Chr7g0223711 51.320 606 285 7 36 635 7 608 0.0 619
Msa0573090 MtrunA17_Chr7g0223621 52.554 607 275 9 36 635 7 607 0.0 619
Msa0573090 MtrunA17_Chr7g0223851 53.659 615 270 11 36 641 16 624 0.0 619
Msa0573090 MtrunA17_Chr6g0462711 51.774 620 286 7 39 648 11 627 0.0 618
Msa0573090 MtrunA17_Chr7g0223031 51.895 607 281 8 36 636 7 608 0.0 615
Msa0573090 MtrunA17_Chr7g0223721 52.224 607 279 8 36 635 7 609 0.0 613
Msa0573090 MtrunA17_Chr2g0287631 52.874 609 277 7 39 640 10 615 0.0 612
Msa0573090 MtrunA17_Chr8g0350731 49.768 647 307 9 22 662 21 655 0.0 611
Msa0573090 MtrunA17_Chr7g0225671 52.960 625 280 11 25 641 3 621 0.0 609
Msa0573090 MtrunA17_Chr7g0223801 51.555 611 284 8 36 640 7 611 0.0 608
Msa0573090 MtrunA17_Chr7g0223781 51.882 611 282 7 36 640 7 611 0.0 608
Msa0573090 MtrunA17_Chr4g0040931 51.405 605 283 8 36 633 7 607 0.0 603
Msa0573090 MtrunA17_Chr7g0223701 49.756 615 289 10 36 635 7 616 0.0 596
Msa0573090 MtrunA17_Chr2g0298861 50.000 624 289 11 36 640 7 626 0.0 595
Msa0573090 MtrunA17_Chr7g0248131 51.718 611 279 11 36 635 7 612 0.0 591
Msa0573090 MtrunA17_Chr2g0296391 55.153 524 227 5 36 553 7 528 0.0 587
Msa0573090 MtrunA17_Chr2g0279901 53.276 580 244 10 38 609 56 616 0.0 583
Msa0573090 MtrunA17_Chr4g0049501 53.276 580 245 10 38 609 53 614 0.0 580
Msa0573090 MtrunA17_Chr7g0223631 49.751 603 284 9 36 635 7 593 0.0 578
Msa0573090 MtrunA17_Chr7g0248151 51.530 621 287 10 36 647 7 622 0.0 578
Msa0573090 MtrunA17_Chr7g0217971 51.347 594 260 8 36 626 7 574 0.0 577
Msa0573090 MtrunA17_Chr7g0233301 50.245 613 262 10 36 640 7 584 0.0 573
Msa0573090 MtrunA17_Chr7g0223821 51.129 620 285 11 36 643 7 620 0.0 569
Msa0573090 MtrunA17_Chr6g0462611 51.532 555 260 6 91 641 12 561 0.0 561
Msa0573090 MtrunA17_Chr4g0012541 50.163 614 284 11 36 641 7 606 0.0 561
Msa0573090 MtrunA17_Chr2g0277021 48.892 632 285 12 38 658 71 675 0.0 547
Msa0573090 MtrunA17_Chr7g0223831 49.511 614 269 11 36 641 7 587 0.0 544
Msa0573090 MtrunA17_Chr8g0390821 46.434 659 277 13 39 640 12 651 0.0 540
Msa0573090 MtrunA17_Chr7g0215261 48.534 614 268 11 36 640 7 581 0.0 536
Msa0573090 MtrunA17_Chr7g0223541 49.117 566 273 7 101 662 31 585 0.0 533
Msa0573090 MtrunA17_Chr7g0228281 47.635 613 265 9 36 641 68 631 2.17e-180 527
Msa0573090 MtrunA17_Chr7g0223681 50.000 522 252 7 118 635 2 518 2.90e-174 508
Msa0573090 MtrunA17_Chr2g0331381 49.446 542 205 7 37 573 5 482 5.04e-172 499
Msa0573090 MtrunA17_Chr2g0293601 51.556 514 207 6 36 543 7 484 5.65e-172 499
Msa0573090 MtrunA17_Chr2g0299921 62.565 382 140 3 36 415 1027 1407 2.53e-153 486
Msa0573090 MtrunA17_Chr2g0299921 62.963 378 136 4 39 413 1414 1790 3.32e-144 461
Msa0573090 MtrunA17_Chr2g0299821 59.843 381 146 4 36 410 7 386 3.33e-152 449
Msa0573090 MtrunA17_Chr2g0299821 60.000 100 31 2 473 565 387 484 1.04e-25 111
Msa0573090 MtrunA17_Chr2g0299851 61.417 381 144 3 35 413 1035 1414 2.29e-150 471
Msa0573090 MtrunA17_Chr2g0299791 61.155 381 145 3 36 414 1040 1419 8.69e-150 469
Msa0573090 MtrunA17_Chr6g0462861 41.842 619 320 15 39 641 10 604 1.50e-149 448
Msa0573090 MtrunA17_Chr2g0293561 57.995 369 148 4 36 398 7 374 3.82e-148 435
Msa0573090 MtrunA17_Chr1g0166551 42.384 604 226 11 39 635 6 494 2.57e-141 422
Msa0573090 MtrunA17_Chr2g0299881 57.935 397 160 5 38 428 1038 1433 1.26e-140 446
Msa0573090 MtrunA17_Chr2g0299881 58.730 63 25 1 212 274 1414 1475 4.87e-15 79.3
Msa0573090 MtrunA17_Chr2g0293271 43.277 476 177 9 21 479 7 406 4.76e-115 351
Msa0573090 MtrunA17_Chr1g0151991 59.091 286 110 4 36 315 7 291 2.96e-111 337
Msa0573090 MtrunA17_Chr7g0245521 60.300 267 99 4 36 296 7 272 1.67e-105 321
Msa0573090 MtrunA17_Chr7g0245531 46.906 307 160 3 329 635 2 305 1.40e-85 271
Msa0573090 MtrunA17_Chr5g0394391 32.950 522 301 12 29 520 19 521 1.69e-81 269
Msa0573090 MtrunA17_Chr6g0462751 41.834 349 141 5 94 437 12 303 1.73e-81 260
Msa0573090 MtrunA17_Chr6g0462631 44.179 335 138 5 113 441 6 297 6.40e-81 258
Msa0573090 MtrunA17_Chr7g0223761 37.931 377 189 3 265 640 3 335 1.64e-80 259
Msa0573090 MtrunA17_Chr1g0152001 47.475 297 150 6 340 635 2 293 2.62e-78 252
Msa0573090 MtrunA17_Chr4g0004331 36.387 382 236 4 37 413 2 381 1.20e-76 262
Msa0573090 MtrunA17_Chr2g0331901 32.112 464 292 7 37 483 2 459 3.00e-74 256
Msa0573090 MtrunA17_Chr3g0098761 31.034 493 320 11 37 520 2 483 1.86e-73 252
Msa0573090 MtrunA17_Chr5g0444001 32.947 431 275 6 37 457 2 428 2.14e-71 241
Msa0573090 MtrunA17_Chr7g0223671 60.541 185 68 3 101 281 8 191 4.71e-70 226
Msa0573090 MtrunA17_Chr1g0188601 58.163 196 77 3 119 310 1 195 9.64e-69 223
Msa0573090 MtrunA17_Chr1g0188611 42.905 296 158 4 346 640 1 286 5.86e-62 208
Msa0573090 MtrunA17_Chr6g0462791 58.084 167 68 1 143 307 9 175 1.47e-61 203
Msa0573090 MtrunA17_Chr3g0120101 28.932 515 322 12 12 496 8 508 2.43e-61 220
Msa0573090 MtrunA17_Chr7g0223771 60.366 164 56 4 123 278 4 166 1.82e-56 189
Msa0573090 MtrunA17_Chr4g0064621 30.224 536 340 14 39 548 141 668 1.49e-54 198
Msa0573090 MtrunA17_Chr4g0060241 29.880 502 318 12 39 522 21 506 1.56e-53 192
Msa0573090 MtrunA17_Chr4g0046881 62.687 134 47 1 162 292 14 147 3.22e-52 177
Msa0573090 MtrunA17_Chr5g0394221 33.333 312 193 7 307 614 51 351 1.95e-47 171
Msa0573090 MtrunA17_Chr5g0442171 32.537 335 200 8 197 517 1 323 1.07e-46 168
Msa0573090 MtrunA17_Chr7g0223861 62.121 132 45 3 105 232 4 134 1.72e-45 158
Msa0573090 MtrunA17_Chr6g0462691 52.518 139 66 0 346 484 1 139 8.76e-44 154
Msa0573090 MtrunA17_Chr6g0462701 43.548 186 74 4 113 292 6 166 9.00e-40 144
Msa0573090 MtrunA17_Chr7g0245541 39.604 202 120 2 442 643 1 200 1.60e-39 144
Msa0573090 MtrunA17_Chr4g0046871 54.455 101 45 1 360 460 6 105 5.45e-31 117
Msa0573090 MtrunA17_Chr6g0481391 47.154 123 60 3 65 186 13 131 2.85e-29 112
Msa0573090 MtrunA17_Chr5g0394231 32.000 225 103 4 101 323 5 181 4.88e-28 111
Msa0573090 MtrunA17_Chr6g0462621 70.968 62 18 0 39 100 10 71 3.39e-24 96.7
Msa0573090 MtrunA17_Chr7g0223691 70.149 67 18 1 36 100 7 73 3.65e-23 93.6
Msa0573090 MtrunA17_Chr1g0188591 64.179 67 22 1 36 100 7 73 1.11e-22 92.8
Msa0573090 MtrunA17_Chr6g0481381 60.274 73 26 1 204 273 2 74 3.42e-22 94.7
Msa0573090 MtrunA17_Chr6g0481381 39.000 100 59 2 541 639 75 173 7.17e-11 62.0
Msa0573090 MtrunA17_Chr2g0284661 54.118 85 39 0 390 474 59 143 7.57e-22 92.0
Msa0573090 MtrunA17_Chr5g0442161 33.766 154 89 4 39 184 29 177 1.87e-17 80.9
Msa0573090 MtrunA17_Chr4g0064651 38.710 93 57 0 422 514 29 121 1.62e-16 76.3
Msa0573090 MtrunA17_Chr2g0299941 63.636 55 20 0 424 478 23 77 3.12e-15 71.6
Msa0573090 MtrunA17_Chr7g0223871 38.583 127 74 3 517 641 7 131 4.88e-14 69.7
Msa0573090 MtrunA17_Chr7g0221651 38.095 84 52 0 239 322 1 84 1.12e-13 67.0
Msa0573090 MtrunA17_Chr7g0223791 40.426 94 55 1 507 600 89 181 2.24e-13 68.9
Msa0573090 MtrunA17_Chr7g0223791 48.780 82 34 3 83 164 18 91 2.87e-13 68.6
Msa0573090 MtrunA17_Chr7g0223881 43.056 72 40 1 315 386 12 82 5.06e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0573090 AT5G42020.1 89.836 669 67 1 1 669 1 668 0.0 1221
Msa0573090 AT5G28540.1 91.190 647 56 1 1 647 1 646 0.0 1208
Msa0573090 AT5G42020.3 91.091 651 57 1 19 669 24 673 0.0 1207
Msa0573090 AT1G09080.1 77.419 651 142 2 1 647 11 660 0.0 1016
Msa0573090 AT1G09080.2 77.743 647 137 2 1 647 11 650 0.0 1011
Msa0573090 AT5G42020.2 77.015 670 96 5 1 669 1 613 0.0 998
Msa0573090 AT3G12580.1 64.547 629 217 4 36 660 7 633 0.0 832
Msa0573090 AT3G09440.1 66.234 616 198 5 36 645 7 618 0.0 828
Msa0573090 AT3G09440.4 66.234 616 198 5 36 645 7 618 0.0 828
Msa0573090 AT3G09440.2 66.234 616 198 5 36 645 7 618 0.0 828
Msa0573090 AT3G09440.3 66.234 616 198 5 36 645 7 618 0.0 828
Msa0573090 AT5G02500.1 64.984 614 209 4 36 645 7 618 0.0 824
Msa0573090 AT1G16030.1 63.550 631 223 5 33 659 3 630 0.0 824
Msa0573090 AT5G02490.1 64.984 614 209 4 36 645 7 618 0.0 820
Msa0573090 AT1G56410.1 62.704 614 221 4 36 645 7 616 0.0 789
Msa0573090 AT5G09590.1 54.138 580 240 11 38 609 59 620 0.0 584
Msa0573090 AT4G37910.1 54.310 580 239 11 38 609 54 615 0.0 560
Msa0573090 AT4G37910.2 54.310 580 239 11 38 609 54 615 0.0 560
Msa0573090 AT4G24280.1 50.934 589 270 11 38 621 80 654 0.0 548
Msa0573090 AT5G49910.1 49.196 622 292 13 38 654 80 682 0.0 547
Msa0573090 AT5G02500.2 67.010 388 123 3 36 419 7 393 0.0 530
Msa0573090 AT5G02500.2 48.077 104 53 1 542 645 386 488 1.98e-25 111
Msa0573090 AT1G11660.4 28.356 663 400 14 37 639 2 649 7.36e-82 275
Msa0573090 AT1G11660.3 28.356 663 400 14 37 639 2 649 7.36e-82 275
Msa0573090 AT1G11660.1 28.356 663 400 14 37 639 2 649 7.36e-82 275
Msa0573090 AT2G32120.1 32.877 511 312 10 39 534 31 525 2.47e-77 258
Msa0573090 AT2G32120.2 32.877 511 312 10 39 534 31 525 2.47e-77 258
Msa0573090 AT1G79930.2 32.159 454 285 7 37 473 2 449 3.23e-75 257
Msa0573090 AT1G79930.1 32.159 454 285 7 37 473 2 449 5.96e-75 258
Msa0573090 AT1G79920.3 31.718 454 287 7 37 473 2 449 4.29e-74 253
Msa0573090 AT1G79920.2 31.718 454 287 7 37 473 2 449 4.29e-74 253
Msa0573090 AT1G79920.4 31.718 454 287 7 37 473 2 449 4.29e-74 253
Msa0573090 AT1G79920.1 31.718 454 287 7 37 473 2 449 5.05e-74 253
Msa0573090 AT1G11660.2 28.275 626 374 14 74 639 2 612 9.41e-73 249
Msa0573090 AT4G16660.1 26.075 721 403 21 36 639 24 731 8.10e-63 224
Msa0573090 AT4G16660.2 26.075 721 403 21 36 639 48 755 1.00e-62 224

Find 219 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATCAAAGATGGTCCTTTC+AGG 0.185011 4_1:-76135564 None:intergenic
ACCAAGTTAGGGACTGTTAT+TGG 0.230124 4_1:+76135378 Msa0573090:CDS
ACCGCTGCTGCCATTGCTTA+TGG 0.244088 4_1:+76136109 Msa0573090:CDS
AACATTCTTGTCTTTGATCT+TGG 0.281163 4_1:+76136157 Msa0573090:CDS
GCAAACAACTGTTTCTATTC+AGG 0.282305 4_1:+76137118 Msa0573090:CDS
GGAGCTCCAGGTGGTGCATC+AGG 0.283486 4_1:+76137880 Msa0573090:CDS
TGGTAAACAGCAGTGATAAT+TGG 0.285966 4_1:-76137847 None:intergenic
CTCGGGAACTTTGATTTGTC+TGG 0.291494 4_1:+76137297 Msa0573090:CDS
TTCAAAAGTTGTTGTACCTT+TGG 0.293588 4_1:-76136726 None:intergenic
TTTGATGTCAAGAGACTTAT+CGG 0.304645 4_1:+76135579 Msa0573090:CDS
GAGGAAGGGACCACCAAGTT+AGG 0.330316 4_1:+76135366 Msa0573090:CDS
CAAACGGTATTCTAAATGTT+AGG 0.333992 4_1:+76137476 Msa0573090:CDS
GTTTGTCCTTGTCACTGATT+TGG 0.335858 4_1:-76137684 None:intergenic
TATTTGTGTTTGCTCACATT+TGG 0.338782 4_1:+76137949 Msa0573090:three_prime_UTR
GTGGGGATGACAGTGTTTCT+AGG 0.341786 4_1:-76137059 None:intergenic
TGCTTCTTTCTTCAGATTTG+AGG 0.345147 4_1:+76135693 Msa0573090:intron
ATCTATGAATGAAAATTTCA+TGG 0.348370 4_1:-76138071 None:intergenic
ACCGACGATGAGAGATTGAT+TGG 0.362358 4_1:+76135510 Msa0573090:CDS
AAGGATGCCGGTGTCATTGC+TGG 0.366360 4_1:+76136055 Msa0573090:CDS
TCACAGGTCCCATTGTCTTC+CGG 0.366501 4_1:-76136626 None:intergenic
CTTCTCACCATCATCTCCTT+AGG 0.367766 4_1:+76134636 Msa0573090:CDS
CTTAATTTCGAACATGTCAT+TGG 0.368118 4_1:-76134482 None:intergenic
CCAAGTTAGGGACTGTTATT+GGG 0.369182 4_1:+76135379 Msa0573090:CDS
CTTGTCTTTGATCTTGGAGG+TGG 0.371703 4_1:+76136163 Msa0573090:CDS
CCTTCCCCTGATGCACCACC+TGG 0.374305 4_1:-76137886 None:intergenic
TGGCTCGCTCTTCTTCTTGC+GGG 0.374938 4_1:+76134604 Msa0573090:CDS
ACTGTTATTGGGATAGATCT+TGG 0.377061 4_1:+76135390 Msa0573090:CDS
ACTCTTCTTTCTCAACAGTT+TGG 0.379400 4_1:-76137786 None:intergenic
CCATTCAAGTGCTTCTTTCA+CGG 0.386836 4_1:-76137752 None:intergenic
ACAAAGGATTGCCGTCTTCT+CGG 0.387262 4_1:+76137279 Msa0573090:CDS
CTTCACTTTCTTGTCTTCCT+CGG 0.392206 4_1:-76137608 None:intergenic
CCAAAGGCAACTGCTTCATC+AGG 0.398543 4_1:-76136789 None:intergenic
TTTACTCTGACCTGAATGTA+TGG 0.402451 4_1:-76135778 None:intergenic
ATTCTTGTCTTTGATCTTGG+AGG 0.402766 4_1:+76136160 Msa0573090:CDS
TTTCTTCAGATTTGAGGATA+AGG 0.403180 4_1:+76135699 Msa0573090:intron
CATCAAAGATGGTCCTTTCA+GGG 0.407212 4_1:-76135563 None:intergenic
AGTTGAACAATGACTTGTTC+CGG 0.409326 4_1:+76136607 Msa0573090:CDS
CAAAGGATTGCCGTCTTCTC+GGG 0.410284 4_1:+76137280 Msa0573090:CDS
TTACAGCTTTCTGTACTGTT+TGG 0.415343 4_1:+76138152 Msa0573090:three_prime_UTR
TGGGGAGGCTGCGAAGAATC+TGG 0.418293 4_1:+76135530 Msa0573090:CDS
TACATATGTTAGAATGTTGA+TGG 0.419263 4_1:+76138259 Msa0573090:three_prime_UTR
GATCACCATTACAAATGAAA+AGG 0.423968 4_1:+76137531 Msa0573090:CDS
GTATCCAGATATCCTTCTCT+TGG 0.424894 4_1:+76136977 Msa0573090:intron
GTCCTAACTCGATTTGCAAT+TGG 0.428710 4_1:+76134447 Msa0573090:five_prime_UTR
GGTAAACAGCAGTGATAATT+GGG 0.429598 4_1:-76137846 None:intergenic
ATCATGGCACTGACTTCCTC+AGG 0.433544 4_1:-76135826 None:intergenic
ATTGATGAGATTGTTCTTGT+TGG 0.434577 4_1:+76136687 Msa0573090:CDS
CTGGCTACTAAGAGCTCTCT+TGG 0.435105 4_1:-76136505 None:intergenic
CCCAATAACAGTCCCTAACT+TGG 0.435276 4_1:-76135379 None:intergenic
GATGTTGCACCTCTTACCCT+TGG 0.436670 4_1:+76136999 Msa0573090:CDS
TATTATGAATAGGTGTTTGA+AGG 0.440657 4_1:+76137243 Msa0573090:intron
CTTCATCTTAGTCAGAATCA+TGG 0.442913 4_1:-76135842 None:intergenic
AAACAGTTGTTTGCTGATCC+TGG 0.445328 4_1:-76137109 None:intergenic
TGCAACATCTGCTGCAAAAG+AGG 0.446763 4_1:+76135347 Msa0573090:CDS
CAAGTTGGAATCAGATGAAA+AGG 0.446989 4_1:+76137714 Msa0573090:CDS
CAAAGGTCACTTCAATTTGA+GGG 0.447858 4_1:-76137444 None:intergenic
GGACTTTGATCAGAGAATAA+TGG 0.449888 4_1:+76136389 Msa0573090:CDS
TCAAAGGTCACTTCAATTTG+AGG 0.450757 4_1:-76137445 None:intergenic
CAGAGGTCAGGTGGAGCTCC+AGG 0.453414 4_1:+76137868 Msa0573090:CDS
CCTGATGAAGCAGTTGCCTT+TGG 0.453901 4_1:+76136789 Msa0573090:CDS
AGCAATGACACCGGCATCCT+TGG 0.458285 4_1:-76136053 None:intergenic
CCGACGATGAGAGATTGATT+GGG 0.463196 4_1:+76135511 Msa0573090:CDS
GACTTGTTCCGGAAGACAAT+GGG 0.468406 4_1:+76136618 Msa0573090:CDS
GTTTCAATTCCAAGGGTAAG+AGG 0.470308 4_1:-76137008 None:intergenic
GTATCTTTCTTCTAATCCTA+CGG 0.471345 4_1:-76138239 None:intergenic
GACCAATTGCAAATCGAGTT+AGG 0.472946 4_1:-76134449 None:intergenic
GGATGGAAAACCATACATTC+AGG 0.477959 4_1:+76135768 Msa0573090:CDS
TCGTCCATTGCCTTCTTCAC+AGG 0.478204 4_1:-76136642 None:intergenic
TGAAAAGGGACGCCTGAGCC+AGG 0.478721 4_1:+76137546 Msa0573090:CDS
GGTCAATTTCCTCCTGGCTC+AGG 0.479380 4_1:-76137558 None:intergenic
TTTGAGGTTCTTTCTACAAA+CGG 0.480420 4_1:+76136226 Msa0573090:CDS
CTCCAACAGTTTCAATTCCA+AGG 0.480598 4_1:-76137016 None:intergenic
CGGTTCTCTGCATAAACGCC+CGG 0.484216 4_1:-76138219 None:intergenic
TCCTTGTTGACAATCTTGTA+AGG 0.485086 4_1:-76135748 None:intergenic
ATGGCTCGCTCTTCTTCTTG+CGG 0.485978 4_1:+76134603 Msa0573090:CDS
TTTCCACACGGACTTGGTGC+TGG 0.487623 4_1:-76136524 None:intergenic
TGCTGCCATTGCTTATGGAT+TGG 0.489882 4_1:+76136114 Msa0573090:CDS
GATGCCGTGGTCACTGTCCC+AGG 0.494172 4_1:+76135901 Msa0573090:CDS
GTCTTCCTCGGCAAACTCCT+CGG 0.495002 4_1:-76137596 None:intergenic
CCTGGTAGGTGGTAAACACC+TGG 0.496443 4_1:-76137091 None:intergenic
AATGACACCGGCATCCTTGG+TGG 0.499327 4_1:-76136050 None:intergenic
CGCAGTAGAGCGACTTACAA+AGG 0.501070 4_1:+76134376 Msa0573090:five_prime_UTR
ATCACCATTACAAATGAAAA+GGG 0.502193 4_1:+76137532 Msa0573090:CDS
ACTCAATTTCCACACGGACT+TGG 0.504632 4_1:-76136530 None:intergenic
CTGGAGCTCCACCTGACCTC+TGG 0.505070 4_1:-76137867 None:intergenic
TCTAGCTCTACTTTAGAAGC+GGG 0.505207 4_1:-76137974 None:intergenic
CTTCAATGATGCTCAGAGGC+AGG 0.507132 4_1:+76136027 Msa0573090:CDS
GACAATGGGACCTGTGAAGA+AGG 0.509040 4_1:+76136632 Msa0573090:CDS
AGTGATAATTGGGTTGCAAA+CGG 0.511011 4_1:-76137836 None:intergenic
ACCCTTGGAATTGAAACTGT+TGG 0.511117 4_1:+76137014 Msa0573090:CDS
GAAAGAAGCACTTGAATGGC+TGG 0.513283 4_1:+76137756 Msa0573090:CDS
GCTTATGGATTGGACAAGAA+AGG 0.514548 4_1:+76136124 Msa0573090:CDS
TCTATGAATGAAAATTTCAT+GGG 0.516037 4_1:-76138070 None:intergenic
CATGATTCTGACTAAGATGA+AGG 0.516191 4_1:+76135843 Msa0573090:CDS
TCCTTGCACTGCAGCACCAA+AGG 0.516370 4_1:-76136805 None:intergenic
AAACGGTATTCTAAATGTTA+GGG 0.516624 4_1:+76137477 Msa0573090:CDS
GAGCTCCAGGTGGTGCATCA+GGG 0.517615 4_1:+76137881 Msa0573090:CDS
CCATCCGGTCAATTTCCTCC+TGG 0.517789 4_1:-76137564 None:intergenic
TCAAATCGAGCACGGGTAAG+TGG 0.518725 4_1:-76136582 None:intergenic
AAGAAGGCAATGGACGATGC+TGG 0.518963 4_1:+76136648 Msa0573090:CDS
GAAGGATTACTTTGATGGAA+AGG 0.521373 4_1:+76136746 Msa0573090:CDS
GATACGATTTCCTTGGTCGT+TGG 0.522054 4_1:-76135466 None:intergenic
GGACAAACTTGCTGACAAGT+TGG 0.525676 4_1:+76137699 Msa0573090:CDS
AAAACAAACCTTGGAGCTGG+TGG 0.525948 4_1:-76137324 None:intergenic
TACAAGATTGTCAACAAGGA+TGG 0.525974 4_1:+76135751 Msa0573090:CDS
AGGAAGGGACCACCAAGTTA+GGG 0.527633 4_1:+76135367 Msa0573090:CDS
AGCAAGGACAACAGAGCACT+TGG 0.529505 4_1:+76136456 Msa0573090:CDS
ATAAGCAATGGCAGCAGCGG+TGG 0.530847 4_1:-76136107 None:intergenic
TGATGGAAAGGAACCAAACA+AGG 0.531735 4_1:+76136758 Msa0573090:CDS
ACTGCTGTTTACCAGAGGTC+AGG 0.531930 4_1:+76137856 Msa0573090:CDS
ATAATTACCTAAGGAGATGA+TGG 0.532489 4_1:-76134643 None:intergenic
ACCGTTTGCATCTACTTCAA+AGG 0.532713 4_1:-76137461 None:intergenic
GAAATCGTATCACACCATCA+TGG 0.533173 4_1:+76135478 Msa0573090:CDS
AGGCAGGCCACCAAGGATGC+CGG 0.534449 4_1:+76136043 Msa0573090:CDS
AATAGGTGTTTGAAGGTGAG+AGG 0.535211 4_1:+76137250 Msa0573090:intron
CCTCGGCTTCACGAACCATC+CGG 0.536252 4_1:-76137579 None:intergenic
GATGAGATTGTTCTTGTTGG+TGG 0.537949 4_1:+76136690 Msa0573090:CDS
AAATCGTATCACACCATCAT+GGG 0.540268 4_1:+76135479 Msa0573090:CDS
CCGTGAAAGAAGCACTTGAA+TGG 0.543546 4_1:+76137752 Msa0573090:CDS
TGGCAGCTGTCAACCCTGAA+AGG 0.545326 4_1:+76135550 Msa0573090:CDS
ACAAACGGAGATACCCATCT+TGG 0.546553 4_1:+76136241 Msa0573090:CDS
TAGAAATGATGAGAATTAGT+AGG 0.546567 4_1:+76137993 Msa0573090:three_prime_UTR
TGTGTTGGTGTTTACAAGAA+CGG 0.547276 4_1:+76135426 Msa0573090:CDS
AAATGTTAGGGCAGAAGACA+AGG 0.547526 4_1:+76137489 Msa0573090:CDS
GAGCACTTGGAAAGCTGAGG+AGG 0.547900 4_1:+76136469 Msa0573090:CDS
CTTGGAATTGAAACTGTTGG+AGG 0.549933 4_1:+76137017 Msa0573090:CDS
TTCTAGCTCTACTTTAGAAG+CGG 0.550863 4_1:-76137975 None:intergenic
GAAACCGCTGAAGCATTCCT+TGG 0.551326 4_1:+76135865 Msa0573090:CDS
AAGTCTCTTGACATCAAAGA+TGG 0.553461 4_1:-76135574 None:intergenic
ATAAGTACTCACCTCCAAGA+TGG 0.554153 4_1:-76136255 None:intergenic
GCCTTTGGTGCTGCAGTGCA+AGG 0.554487 4_1:+76136804 Msa0573090:CDS
CACAAAACAAACCTTGGAGC+TGG 0.555992 4_1:-76137327 None:intergenic
AGCTCCAGGTGGTGCATCAG+GGG 0.556960 4_1:+76137882 Msa0573090:CDS
ATACATTCAGGTCAGAGTAA+AGG 0.559988 4_1:+76135780 Msa0573090:CDS
ACCTTTGAAGTAGATGCAAA+CGG 0.560638 4_1:+76137460 Msa0573090:CDS
CCAGGTGGTGCATCAGGGGA+AGG 0.561188 4_1:+76137886 Msa0573090:CDS
TGCTCAGAGGCAGGCCACCA+AGG 0.561411 4_1:+76136036 Msa0573090:CDS
CCAGGTGTTTACCACCTACC+AGG 0.561692 4_1:+76137091 Msa0573090:CDS
TTCCTCAGGGCTGAACACCT+TGG 0.565203 4_1:-76135812 None:intergenic
CTGGAATCCCACCAGCTCCA+AGG 0.566039 4_1:+76137316 Msa0573090:CDS
ACATCTGCTGCAAAAGAGGA+AGG 0.567823 4_1:+76135351 Msa0573090:CDS
GCGTTTATGCAGAGAACCGT+AGG 0.568337 4_1:+76138223 Msa0573090:three_prime_UTR
CCCAATCAATCTCTCATCGT+CGG 0.570425 4_1:-76135511 None:intergenic
TAAGTACTCACCTCCAAGAT+GGG 0.574552 4_1:-76136254 None:intergenic
TGGTGCATCAGGGGAAGGAG+AGG 0.575558 4_1:+76137891 Msa0573090:CDS
TCCAACAGTTTCAATTCCAA+GGG 0.575984 4_1:-76137015 None:intergenic
TGACTTGTTCCGGAAGACAA+TGG 0.576660 4_1:+76136617 Msa0573090:CDS
TCCTTACAAGATTGTCAACA+AGG 0.577546 4_1:+76135747 Msa0573090:CDS
AATAACAGTCCCTAACTTGG+TGG 0.577985 4_1:-76135376 None:intergenic
AATCAAAGTTCCCGAGAAGA+CGG 0.581537 4_1:-76137290 None:intergenic
AACGGAGATACCCATCTTGG+AGG 0.583876 4_1:+76136244 Msa0573090:CDS
GCAGTAGAGCGACTTACAAA+GGG 0.585239 4_1:+76134377 Msa0573090:five_prime_UTR
TCCATAAGCAATGGCAGCAG+CGG 0.585512 4_1:-76136110 None:intergenic
CTTGTCCAATCCATAAGCAA+TGG 0.592089 4_1:-76136119 None:intergenic
CAACTCTTCAAATCGAGCAC+GGG 0.593000 4_1:-76136589 None:intergenic
TGAAGGAAAGAATTGATGCT+CGG 0.593052 4_1:+76137626 Msa0573090:CDS
CCAGGAGGAAATTGACCGGA+TGG 0.593074 4_1:+76137564 Msa0573090:CDS
TCAACTCTTCAAATCGAGCA+CGG 0.593848 4_1:-76136590 None:intergenic
AGGGCAGAAGACAAGGGCAC+AGG 0.595427 4_1:+76137496 Msa0573090:CDS
CACACAAGAGGCAATCCCAT+TGG 0.596022 4_1:+76134416 Msa0573090:five_prime_UTR
GGAACAACATATTCATGTGT+TGG 0.597629 4_1:+76135411 Msa0573090:CDS
ATGGTGTGATACGATTTCCT+TGG 0.600611 4_1:-76135473 None:intergenic
GCTGTTTACCAGAGGTCAGG+TGG 0.602705 4_1:+76137859 Msa0573090:CDS
CCGGATGGTTCGTGAAGCCG+AGG 0.603140 4_1:+76137579 Msa0573090:CDS
TGAGCCAGGAGGAAATTGAC+CGG 0.604755 4_1:+76137560 Msa0573090:CDS
AAAGGTCACTTCAATTTGAG+GGG 0.605663 4_1:-76137443 None:intergenic
GAGGTGCAACATCCAAGAGA+AGG 0.607551 4_1:-76136989 None:intergenic
TAAGCAATGGCAGCAGCGGT+GGG 0.609672 4_1:-76136106 None:intergenic
AGCACTTGGAAAGCTGAGGA+GGG 0.611229 4_1:+76136470 Msa0573090:CDS
CGATGAGAGATTGATTGGGG+AGG 0.612921 4_1:+76135515 Msa0573090:CDS
CTTGCCAAGGAATGCTTCAG+CGG 0.613919 4_1:-76135869 None:intergenic
ACATATGTTAGAATGTTGAT+GGG 0.614530 4_1:+76138260 Msa0573090:three_prime_UTR
GACATGTTCCTACACACAAG+AGG 0.620463 4_1:+76134404 Msa0573090:five_prime_UTR
CGAGGAAGACAAGAAAGTGA+AGG 0.622597 4_1:+76137609 Msa0573090:CDS
GCATAGCAAGGATATTAGCA+AGG 0.623368 4_1:+76136440 Msa0573090:CDS
CGACGATGAGAGATTGATTG+GGG 0.628193 4_1:+76135512 Msa0573090:CDS
TGTTTGCTGATCCTGGTAGG+TGG 0.630248 4_1:-76137102 None:intergenic
ATGAGAATTAGTAGGTCAAG+CGG 0.630667 4_1:+76138001 Msa0573090:three_prime_UTR
CAAGACTATTCGTGATGCCG+TGG 0.630982 4_1:+76135888 Msa0573090:CDS
GGTTCTCTGCATAAACGCCC+GGG 0.633048 4_1:-76138218 None:intergenic
ACATGTCATTGGTGATTACG+TGG 0.633496 4_1:-76134471 None:intergenic
GAAATCATAGCCAACGACCA+AGG 0.633608 4_1:+76135456 Msa0573090:CDS
CTGGTAGGTGGTAAACACCT+GGG 0.633786 4_1:-76137090 None:intergenic
TCTTTGAATCACAACAAAGA+CGG 0.634288 4_1:+76134561 Msa0573090:five_prime_UTR
AGGTCAGGTGGAGCTCCAGG+TGG 0.634814 4_1:+76137871 Msa0573090:CDS
TTCTTGTTGGTGGAAGCACA+AGG 0.637706 4_1:+76136700 Msa0573090:CDS
AAACAAACCTTGGAGCTGGT+GGG 0.639146 4_1:-76137323 None:intergenic
GGGACCTGTGAAGAAGGCAA+TGG 0.639949 4_1:+76136638 Msa0573090:CDS
TTCACCTGGGACAGTGACCA+CGG 0.640825 4_1:-76135905 None:intergenic
TGGGATTGCCTCTTGTGTGT+AGG 0.640932 4_1:-76134412 None:intergenic
AGTTGTTTGCTGATCCTGGT+AGG 0.644960 4_1:-76137105 None:intergenic
TGAAGCCGAGGAGTTTGCCG+AGG 0.647044 4_1:+76137591 Msa0573090:CDS
TATGGATTGGACAAGAAAGG+TGG 0.647597 4_1:+76136127 Msa0573090:CDS
CAAAGGCAACTGCTTCATCA+GGG 0.652946 4_1:-76136788 None:intergenic
GATGGAAAGGAACCAAACAA+GGG 0.654365 4_1:+76136759 Msa0573090:CDS
AGTAAAGGATGGTGAGACCA+AGG 0.655359 4_1:+76135795 Msa0573090:CDS
TGTCATTGCTGGTTTGAACG+TGG 0.655475 4_1:+76136066 Msa0573090:CDS
TTATCACTGCTGTTTACCAG+AGG 0.655496 4_1:+76137851 Msa0573090:CDS
CATCTGCTGCAAAAGAGGAA+GGG 0.658549 4_1:+76135352 Msa0573090:CDS
ATGGAAAGGAACCAAACAAG+GGG 0.659203 4_1:+76136760 Msa0573090:CDS
ATTCAGGTCAGAGTAAAGGA+TGG 0.659644 4_1:+76135784 Msa0573090:CDS
TCATGGCACTGACTTCCTCA+GGG 0.661707 4_1:-76135825 None:intergenic
GCAAGAAGAAGAGCGAGCCA+TGG 0.662253 4_1:-76134601 None:intergenic
ACAGAGCACTTGGAAAGCTG+AGG 0.662613 4_1:+76136466 Msa0573090:CDS
GTTCAAACCAGCAATGACAC+CGG 0.667444 4_1:-76136062 None:intergenic
TCGGTGAAAGAAACCCATGA+TGG 0.669628 4_1:-76135492 None:intergenic
CATCACGAATAGTCTTGCCA+AGG 0.671739 4_1:-76135882 None:intergenic
GACCAAGGTGTTCAGCCCTG+AGG 0.674395 4_1:+76135810 Msa0573090:CDS
TAGCCAGCACCAAGTCCGTG+TGG 0.679452 4_1:+76136521 Msa0573090:CDS
TGGAAGCACAAGGATTCCAA+AGG 0.684118 4_1:+76136710 Msa0573090:CDS
AATGTTAGGGCAGAAGACAA+GGG 0.691069 4_1:+76137490 Msa0573090:CDS
AGGTGAGAGGAGTCTCACAA+AGG 0.713013 4_1:+76137263 Msa0573090:CDS
TGATACATCTCACAACACCA+TGG 0.713815 4_1:+76134584 Msa0573090:exon
AAAGGGACGCCTGAGCCAGG+AGG 0.717721 4_1:+76137549 Msa0573090:CDS
CTTACTTCAATGATGCTCAG+AGG 0.721672 4_1:+76136023 Msa0573090:CDS
AGTATCTTGACAATTGACAA+TGG 0.727159 4_1:+76136199 Msa0573090:CDS
GAGGGTGGTGAAGAAACCAA+AGG 0.727490 4_1:+76136843 Msa0573090:CDS
AAAGTGACTCAATTTCCACA+CGG 0.743191 4_1:-76136536 None:intergenic
TGGAAAGGAACCAAACAAGG+GGG 0.770257 4_1:+76136761 Msa0573090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATTAACAGTCTTTAAA+AGG - chr4_1:76134968-76134987 None:intergenic 15.0%
!! AACATAAATCAACTATTTAA+AGG - chr4_1:76135212-76135231 None:intergenic 15.0%
!! AAAACTCAAAACATTTAAAT+CGG - chr4_1:76135285-76135304 None:intergenic 15.0%
!!! TTTGTTATAATTTGATGTAA+TGG + chr4_1:76135652-76135671 Msa0573090:intron 15.0%
!! TTGTTATAATTTGATGTAAT+GGG + chr4_1:76135653-76135672 Msa0573090:intron 15.0%
!!! TTGTTAAATTTTTATGATCA+TGG + chr4_1:76138033-76138052 Msa0573090:three_prime_UTR 15.0%
!!! TGTTAAATTTTTATGATCAT+GGG + chr4_1:76138034-76138053 Msa0573090:three_prime_UTR 15.0%
!! AGATATGTAATAATTACCTA+AGG - chr4_1:76134655-76134674 None:intergenic 20.0%
!!! GTTTTAGATCTTTGATTTTA+TGG + chr4_1:76134736-76134755 Msa0573090:intron 20.0%
!!! TTGTTTTGTTTTGAATTTTG+TGG + chr4_1:76134906-76134925 Msa0573090:intron 20.0%
!! AACAAATAAAAAGGTCTAAT+TGG - chr4_1:76135031-76135050 None:intergenic 20.0%
!!! ATTAGACCTTTTTATTTGTT+TGG + chr4_1:76135031-76135050 Msa0573090:intron 20.0%
!! GATAATCCAAACAAATAAAA+AGG - chr4_1:76135040-76135059 None:intergenic 20.0%
!!! TTACTAGTGATTTATTTTAC+TGG + chr4_1:76135097-76135116 Msa0573090:intron 20.0%
!! ATTACAAATAGAACCTTAAA+CGG - chr4_1:76135185-76135204 None:intergenic 20.0%
!!! TAGTTGATTTATGTTGTTTT+CGG + chr4_1:76135217-76135236 Msa0573090:intron 20.0%
!! TGTTAAAATGAAGACAAAAT+GGG - chr4_1:76135977-76135996 None:intergenic 20.0%
!! ATGTTAAAATGAAGACAAAA+TGG - chr4_1:76135978-76135997 None:intergenic 20.0%
!! TACACAATATTGTATTTAGA+AGG - chr4_1:76137184-76137203 None:intergenic 20.0%
!! AAATACAATATTGTGTAATG+AGG + chr4_1:76137187-76137206 Msa0573090:intron 20.0%
!! AATACAATATTGTGTAATGA+GGG + chr4_1:76137188-76137207 Msa0573090:intron 20.0%
!!! TGTCTGTTTTTATTATGAAT+AGG + chr4_1:76137233-76137252 Msa0573090:intron 20.0%
!!! TGATTAATCAATTTTTCTTG+TGG + chr4_1:76137404-76137423 Msa0573090:intron 20.0%
!! TCTATGAATGAAAATTTCAT+GGG - chr4_1:76138073-76138092 None:intergenic 20.0%
!! ATCTATGAATGAAAATTTCA+TGG - chr4_1:76138074-76138093 None:intergenic 20.0%
!! AAAAAAACTAGACACAAAAA+AGG - chr4_1:76138114-76138133 None:intergenic 20.0%
! ACAAAAGCAATGAGAAAAAA+AGG - chr4_1:76134715-76134734 None:intergenic 25.0%
!!! TTTATTTTACTGGCTTCAAA+TGG + chr4_1:76135107-76135126 Msa0573090:intron 25.0%
! TTACAAATAGAACCTTAAAC+GGG - chr4_1:76135184-76135203 None:intergenic 25.0%
!!! AGTTGATTTATGTTGTTTTC+GGG + chr4_1:76135218-76135237 Msa0573090:intron 25.0%
! GTTAAAATGAAGACAAAATG+GGG - chr4_1:76135976-76135995 None:intergenic 25.0%
!!! TGTCTTCATTTTAACATTTC+TGG + chr4_1:76135981-76136000 Msa0573090:intron 25.0%
!!! TATTTGTTATTGATGCAAGT+AGG + chr4_1:76136914-76136933 Msa0573090:intron 25.0%
! ATACAATATTGTGTAATGAG+GGG + chr4_1:76137189-76137208 Msa0573090:intron 25.0%
! TATTATGAATAGGTGTTTGA+AGG + chr4_1:76137243-76137262 Msa0573090:intron 25.0%
! AAACGGTATTCTAAATGTTA+GGG + chr4_1:76137477-76137496 Msa0573090:CDS 25.0%
! ATCACCATTACAAATGAAAA+GGG + chr4_1:76137532-76137551 Msa0573090:CDS 25.0%
! AGATGAAAAGGAAAAAATTG+AGG + chr4_1:76137726-76137745 Msa0573090:CDS 25.0%
! TAGAAATGATGAGAATTAGT+AGG + chr4_1:76137993-76138012 Msa0573090:three_prime_UTR 25.0%
! TACATATGTTAGAATGTTGA+TGG + chr4_1:76138259-76138278 Msa0573090:three_prime_UTR 25.0%
! ACATATGTTAGAATGTTGAT+GGG + chr4_1:76138260-76138279 Msa0573090:three_prime_UTR 25.0%
CTTAATTTCGAACATGTCAT+TGG - chr4_1:76134485-76134504 None:intergenic 30.0%
TCTTTGAATCACAACAAAGA+CGG + chr4_1:76134561-76134580 Msa0573090:five_prime_UTR 30.0%
ATAATTACCTAAGGAGATGA+TGG - chr4_1:76134646-76134665 None:intergenic 30.0%
ATTAGAATGTGATGCAAGTA+GGG - chr4_1:76134785-76134804 None:intergenic 30.0%
AATTAGAATGTGATGCAAGT+AGG - chr4_1:76134786-76134805 None:intergenic 30.0%
TAATTAATACAATTACGCGC+CGG + chr4_1:76134980-76134999 Msa0573090:intron 30.0%
!! CTTCTAAGATTCAAAGAAAC+CGG - chr4_1:76135002-76135021 None:intergenic 30.0%
AACGGGAAAAAACATGATTA+TGG - chr4_1:76135167-76135186 None:intergenic 30.0%
!!! ATCATGTTTTTTCCCGTTTA+AGG + chr4_1:76135169-76135188 Msa0573090:intron 30.0%
!!! TTTTCGGGTAATGCTTTTAT+GGG + chr4_1:76135233-76135252 Msa0573090:intron 30.0%
! TTTTATGGGATGTGATTACA+TGG + chr4_1:76135247-76135266 Msa0573090:intron 30.0%
TTGTCGTTATAATATTGCGA+TGG + chr4_1:76135304-76135323 Msa0573090:intron 30.0%
TTTGATGTCAAGAGACTTAT+CGG + chr4_1:76135579-76135598 Msa0573090:CDS 30.0%
TTTCTTCAGATTTGAGGATA+AGG + chr4_1:76135699-76135718 Msa0573090:intron 30.0%
AACATTCTTGTCTTTGATCT+TGG + chr4_1:76136157-76136176 Msa0573090:CDS 30.0%
AGTATCTTGACAATTGACAA+TGG + chr4_1:76136199-76136218 Msa0573090:CDS 30.0%
!! AATTGACAATGGTGTTTTTG+AGG + chr4_1:76136210-76136229 Msa0573090:CDS 30.0%
! TTTGAGGTTCTTTCTACAAA+CGG + chr4_1:76136226-76136245 Msa0573090:CDS 30.0%
TAACTCTTCAATTGTTTACC+AGG + chr4_1:76136363-76136382 Msa0573090:intron 30.0%
!!! GAAATTGAGTCACTTTTTGA+TGG + chr4_1:76136543-76136562 Msa0573090:CDS 30.0%
ATTGATGAGATTGTTCTTGT+TGG + chr4_1:76136687-76136706 Msa0573090:CDS 30.0%
TTCAAAAGTTGTTGTACCTT+TGG - chr4_1:76136729-76136748 None:intergenic 30.0%
!! AAAGGTACAACAACTTTTGA+AGG + chr4_1:76136728-76136747 Msa0573090:CDS 30.0%
!! CTTTTGAAGGATTACTTTGA+TGG + chr4_1:76136741-76136760 Msa0573090:CDS 30.0%
ATAGACTATAATGGTACCTT+TGG - chr4_1:76136862-76136881 None:intergenic 30.0%
TGATATCACAAAACAAACCT+TGG - chr4_1:76137336-76137355 None:intergenic 30.0%
CTTCTATGAACTTTCTCTAT+TGG + chr4_1:76137362-76137381 Msa0573090:intron 30.0%
CAAACGGTATTCTAAATGTT+AGG + chr4_1:76137476-76137495 Msa0573090:CDS 30.0%
GATCACCATTACAAATGAAA+AGG + chr4_1:76137531-76137550 Msa0573090:CDS 30.0%
! GTTTTTCATGTTGTAGACAT+AGG - chr4_1:76137665-76137684 None:intergenic 30.0%
TATTTGTGTTTGCTCACATT+TGG + chr4_1:76137949-76137968 Msa0573090:three_prime_UTR 30.0%
GTATCTTTCTTCTAATCCTA+CGG - chr4_1:76138242-76138261 None:intergenic 30.0%
!! TTAGGACAGTTTTAGCCAAT+GGG - chr4_1:76134434-76134453 None:intergenic 35.0%
!!! GTTTTCGGGTAATGCTTTTA+TGG + chr4_1:76135232-76135251 Msa0573090:intron 35.0%
ATATTGCGATGGTTTATTGC+AGG + chr4_1:76135315-76135334 Msa0573090:intron 35.0%
ACTGTTATTGGGATAGATCT+TGG + chr4_1:76135390-76135409 Msa0573090:CDS 35.0%
GGAACAACATATTCATGTGT+TGG + chr4_1:76135411-76135430 Msa0573090:CDS 35.0%
! TGTGTTGGTGTTTACAAGAA+CGG + chr4_1:76135426-76135445 Msa0573090:CDS 35.0%
AAATCGTATCACACCATCAT+GGG + chr4_1:76135479-76135498 Msa0573090:CDS 35.0%
AAGTCTCTTGACATCAAAGA+TGG - chr4_1:76135577-76135596 None:intergenic 35.0%
TGCTTCTTTCTTCAGATTTG+AGG + chr4_1:76135693-76135712 Msa0573090:intron 35.0%
TCCTTACAAGATTGTCAACA+AGG + chr4_1:76135747-76135766 Msa0573090:CDS 35.0%
TCCTTGTTGACAATCTTGTA+AGG - chr4_1:76135751-76135770 None:intergenic 35.0%
TACAAGATTGTCAACAAGGA+TGG + chr4_1:76135751-76135770 Msa0573090:CDS 35.0%
TTTACTCTGACCTGAATGTA+TGG - chr4_1:76135781-76135800 None:intergenic 35.0%
ATACATTCAGGTCAGAGTAA+AGG + chr4_1:76135780-76135799 Msa0573090:CDS 35.0%
CTTCATCTTAGTCAGAATCA+TGG - chr4_1:76135845-76135864 None:intergenic 35.0%
CATGATTCTGACTAAGATGA+AGG + chr4_1:76135843-76135862 Msa0573090:CDS 35.0%
TGTAATTCACCAATTCACCT+GGG - chr4_1:76135921-76135940 None:intergenic 35.0%
TTGTAATTCACCAATTCACC+TGG - chr4_1:76135922-76135941 None:intergenic 35.0%
! AACTTGTTCCTCATGCAATT+TGG + chr4_1:76135940-76135959 Msa0573090:intron 35.0%
GAAAGTAACCAAATTGCATG+AGG - chr4_1:76135951-76135970 None:intergenic 35.0%
ATTCTTGTCTTTGATCTTGG+AGG + chr4_1:76136160-76136179 Msa0573090:CDS 35.0%
ACAATTGAAGAGTTAGCACT+TGG - chr4_1:76136358-76136377 None:intergenic 35.0%
GGACTTTGATCAGAGAATAA+TGG + chr4_1:76136389-76136408 Msa0573090:CDS 35.0%
! GATCAAGAAAAAGCATAGCA+AGG + chr4_1:76136428-76136447 Msa0573090:CDS 35.0%
AAAGTGACTCAATTTCCACA+CGG - chr4_1:76136539-76136558 None:intergenic 35.0%
!! AGTTGAACAATGACTTGTTC+CGG + chr4_1:76136607-76136626 Msa0573090:CDS 35.0%
GAAGGATTACTTTGATGGAA+AGG + chr4_1:76136746-76136765 Msa0573090:CDS 35.0%
GGCTAGAGTATAGACTATAA+TGG - chr4_1:76136871-76136890 None:intergenic 35.0%
! TCTAGCCTTTCAATTGCATT+AGG + chr4_1:76136884-76136903 Msa0573090:intron 35.0%
AGCTACCTAATGCAATTGAA+AGG - chr4_1:76136892-76136911 None:intergenic 35.0%
! CAATGAGAGAGTGTAATACT+AGG - chr4_1:76136943-76136962 None:intergenic 35.0%
TCCAACAGTTTCAATTCCAA+GGG - chr4_1:76137018-76137037 None:intergenic 35.0%
!! GCAAACAACTGTTTCTATTC+AGG + chr4_1:76137118-76137137 Msa0573090:CDS 35.0%
AGCAATATGCAGTGGAATAA+TGG - chr4_1:76137151-76137170 None:intergenic 35.0%
TTATTCCACTGCATATTGCT+AGG + chr4_1:76137151-76137170 Msa0573090:intron 35.0%
AATAAAAACAGACAACACCC+CGG - chr4_1:76137227-76137246 None:intergenic 35.0%
TTCTTGTGGTAATTGAACAG+AGG + chr4_1:76137418-76137437 Msa0573090:intron 35.0%
AAAGGTCACTTCAATTTGAG+GGG - chr4_1:76137446-76137465 None:intergenic 35.0%
CAAAGGTCACTTCAATTTGA+GGG - chr4_1:76137447-76137466 None:intergenic 35.0%
TCAAAGGTCACTTCAATTTG+AGG - chr4_1:76137448-76137467 None:intergenic 35.0%
!! ACCTTTGAAGTAGATGCAAA+CGG + chr4_1:76137460-76137479 Msa0573090:CDS 35.0%
TGAAGGAAAGAATTGATGCT+CGG + chr4_1:76137626-76137645 Msa0573090:CDS 35.0%
GAAAAACCAAATCAGTGACA+AGG + chr4_1:76137678-76137697 Msa0573090:CDS 35.0%
! CAAGTTGGAATCAGATGAAA+AGG + chr4_1:76137714-76137733 Msa0573090:CDS 35.0%
ACTCTTCTTTCTCAACAGTT+TGG - chr4_1:76137789-76137808 None:intergenic 35.0%
! AGTGATAATTGGGTTGCAAA+CGG - chr4_1:76137839-76137858 None:intergenic 35.0%
GGTAAACAGCAGTGATAATT+GGG - chr4_1:76137849-76137868 None:intergenic 35.0%
TGGTAAACAGCAGTGATAAT+TGG - chr4_1:76137850-76137869 None:intergenic 35.0%
!! TTCTAGCTCTACTTTAGAAG+CGG - chr4_1:76137978-76137997 None:intergenic 35.0%
ATGAGAATTAGTAGGTCAAG+CGG + chr4_1:76138001-76138020 Msa0573090:three_prime_UTR 35.0%
TTACAGCTTTCTGTACTGTT+TGG + chr4_1:76138152-76138171 Msa0573090:three_prime_UTR 35.0%
!! GTTAGGACAGTTTTAGCCAA+TGG - chr4_1:76134435-76134454 None:intergenic 40.0%
! GTCCTAACTCGATTTGCAAT+TGG + chr4_1:76134447-76134466 Msa0573090:five_prime_UTR 40.0%
GACCAATTGCAAATCGAGTT+AGG - chr4_1:76134452-76134471 None:intergenic 40.0%
! ACATGTCATTGGTGATTACG+TGG - chr4_1:76134474-76134493 None:intergenic 40.0%
! TAAAAAGCGCAGAGTAACAC+TGG + chr4_1:76134516-76134535 Msa0573090:five_prime_UTR 40.0%
TGATACATCTCACAACACCA+TGG + chr4_1:76134584-76134603 Msa0573090:exon 40.0%
TGGGATGTGATTACATGGTT+TGG + chr4_1:76135252-76135271 Msa0573090:intron 40.0%
AATAACAGTCCCTAACTTGG+TGG - chr4_1:76135379-76135398 None:intergenic 40.0%
ACCAAGTTAGGGACTGTTAT+TGG + chr4_1:76135378-76135397 Msa0573090:CDS 40.0%
CCAAGTTAGGGACTGTTATT+GGG + chr4_1:76135379-76135398 Msa0573090:CDS 40.0%
ATGGTGTGATACGATTTCCT+TGG - chr4_1:76135476-76135495 None:intergenic 40.0%
GAAATCGTATCACACCATCA+TGG + chr4_1:76135478-76135497 Msa0573090:CDS 40.0%
CATCAAAGATGGTCCTTTCA+GGG - chr4_1:76135566-76135585 None:intergenic 40.0%
ACATCAAAGATGGTCCTTTC+AGG - chr4_1:76135567-76135586 None:intergenic 40.0%
GGATGGAAAACCATACATTC+AGG + chr4_1:76135768-76135787 Msa0573090:CDS 40.0%
ATTCAGGTCAGAGTAAAGGA+TGG + chr4_1:76135784-76135803 Msa0573090:CDS 40.0%
CTTACTTCAATGATGCTCAG+AGG + chr4_1:76136023-76136042 Msa0573090:CDS 40.0%
CTTGTCCAATCCATAAGCAA+TGG - chr4_1:76136122-76136141 None:intergenic 40.0%
!! GCTTATGGATTGGACAAGAA+AGG + chr4_1:76136124-76136143 Msa0573090:CDS 40.0%
!! TATGGATTGGACAAGAAAGG+TGG + chr4_1:76136127-76136146 Msa0573090:CDS 40.0%
TAAGTACTCACCTCCAAGAT+GGG - chr4_1:76136257-76136276 None:intergenic 40.0%
ATAAGTACTCACCTCCAAGA+TGG - chr4_1:76136258-76136277 None:intergenic 40.0%
CTTCAATTGTTTACCAGGTG+AGG + chr4_1:76136368-76136387 Msa0573090:intron 40.0%
GCATAGCAAGGATATTAGCA+AGG + chr4_1:76136440-76136459 Msa0573090:CDS 40.0%
TCAACTCTTCAAATCGAGCA+CGG - chr4_1:76136593-76136612 None:intergenic 40.0%
GATGAGATTGTTCTTGTTGG+TGG + chr4_1:76136690-76136709 Msa0573090:CDS 40.0%
TGATGGAAAGGAACCAAACA+AGG + chr4_1:76136758-76136777 Msa0573090:CDS 40.0%
GATGGAAAGGAACCAAACAA+GGG + chr4_1:76136759-76136778 Msa0573090:CDS 40.0%
ATGGAAAGGAACCAAACAAG+GGG + chr4_1:76136760-76136779 Msa0573090:CDS 40.0%
!!! TGCAAGGAAGCATTTTGAGT+GGG + chr4_1:76136820-76136839 Msa0573090:CDS 40.0%
GTATCCAGATATCCTTCTCT+TGG + chr4_1:76136977-76136996 Msa0573090:intron 40.0%
ACATCCAAGAGAAGGATATC+TGG - chr4_1:76136984-76137003 None:intergenic 40.0%
GTTTCAATTCCAAGGGTAAG+AGG - chr4_1:76137011-76137030 None:intergenic 40.0%
ACCCTTGGAATTGAAACTGT+TGG + chr4_1:76137014-76137033 Msa0573090:CDS 40.0%
CTCCAACAGTTTCAATTCCA+AGG - chr4_1:76137019-76137038 None:intergenic 40.0%
CTTGGAATTGAAACTGTTGG+AGG + chr4_1:76137017-76137036 Msa0573090:CDS 40.0%
!!! AACACCTGGGATTTTTTGGT+GGG - chr4_1:76137080-76137099 None:intergenic 40.0%
!!! AAACACCTGGGATTTTTTGG+TGG - chr4_1:76137081-76137100 None:intergenic 40.0%
!!! GGTAAACACCTGGGATTTTT+TGG - chr4_1:76137084-76137103 None:intergenic 40.0%
! AAACAGTTGTTTGCTGATCC+TGG - chr4_1:76137112-76137131 None:intergenic 40.0%
AATGTCCTAGCAATATGCAG+TGG - chr4_1:76137159-76137178 None:intergenic 40.0%
AATAGGTGTTTGAAGGTGAG+AGG + chr4_1:76137250-76137269 Msa0573090:intron 40.0%
AATCAAAGTTCCCGAGAAGA+CGG - chr4_1:76137293-76137312 None:intergenic 40.0%
ACCGTTTGCATCTACTTCAA+AGG - chr4_1:76137464-76137483 None:intergenic 40.0%
AAATGTTAGGGCAGAAGACA+AGG + chr4_1:76137489-76137508 Msa0573090:CDS 40.0%
AATGTTAGGGCAGAAGACAA+GGG + chr4_1:76137490-76137509 Msa0573090:CDS 40.0%
! GCGTCCCTTTTCATTTGTAA+TGG - chr4_1:76137539-76137558 None:intergenic 40.0%
CTTCACTTTCTTGTCTTCCT+CGG - chr4_1:76137611-76137630 None:intergenic 40.0%
! GTTTGTCCTTGTCACTGATT+TGG - chr4_1:76137687-76137706 None:intergenic 40.0%
CCATTCAAGTGCTTCTTTCA+CGG - chr4_1:76137755-76137774 None:intergenic 40.0%
! TTATCACTGCTGTTTACCAG+AGG + chr4_1:76137851-76137870 Msa0573090:CDS 40.0%
!! TCTAGCTCTACTTTAGAAGC+GGG - chr4_1:76137977-76137996 None:intergenic 40.0%
!!! TGCTTGTTTTGTGACTTTCC+CGG + chr4_1:76138200-76138219 Msa0573090:three_prime_UTR 40.0%
GCAGTAGAGCGACTTACAAA+GGG + chr4_1:76134377-76134396 Msa0573090:five_prime_UTR 45.0%
GACATGTTCCTACACACAAG+AGG + chr4_1:76134404-76134423 Msa0573090:five_prime_UTR 45.0%
CTTCTCACCATCATCTCCTT+AGG + chr4_1:76134636-76134655 Msa0573090:CDS 45.0%
TGCAACATCTGCTGCAAAAG+AGG + chr4_1:76135347-76135366 Msa0573090:CDS 45.0%
ACATCTGCTGCAAAAGAGGA+AGG + chr4_1:76135351-76135370 Msa0573090:CDS 45.0%
CATCTGCTGCAAAAGAGGAA+GGG + chr4_1:76135352-76135371 Msa0573090:CDS 45.0%
CCCAATAACAGTCCCTAACT+TGG - chr4_1:76135382-76135401 None:intergenic 45.0%
GAAATCATAGCCAACGACCA+AGG + chr4_1:76135456-76135475 Msa0573090:CDS 45.0%
GATACGATTTCCTTGGTCGT+TGG - chr4_1:76135469-76135488 None:intergenic 45.0%
TCGGTGAAAGAAACCCATGA+TGG - chr4_1:76135495-76135514 None:intergenic 45.0%
ACCGACGATGAGAGATTGAT+TGG + chr4_1:76135510-76135529 Msa0573090:CDS 45.0%
CCCAATCAATCTCTCATCGT+CGG - chr4_1:76135514-76135533 None:intergenic 45.0%
CCGACGATGAGAGATTGATT+GGG + chr4_1:76135511-76135530 Msa0573090:CDS 45.0%
CGACGATGAGAGATTGATTG+GGG + chr4_1:76135512-76135531 Msa0573090:CDS 45.0%
AGTAAAGGATGGTGAGACCA+AGG + chr4_1:76135795-76135814 Msa0573090:CDS 45.0%
! CATCACGAATAGTCTTGCCA+AGG - chr4_1:76135885-76135904 None:intergenic 45.0%
GTTCAAACCAGCAATGACAC+CGG - chr4_1:76136065-76136084 None:intergenic 45.0%
!! TGTCATTGCTGGTTTGAACG+TGG + chr4_1:76136066-76136085 Msa0573090:CDS 45.0%
TGCTGCCATTGCTTATGGAT+TGG + chr4_1:76136114-76136133 Msa0573090:CDS 45.0%
CTTGTCTTTGATCTTGGAGG+TGG + chr4_1:76136163-76136182 Msa0573090:CDS 45.0%
ACAAACGGAGATACCCATCT+TGG + chr4_1:76136241-76136260 Msa0573090:CDS 45.0%
ACTCAATTTCCACACGGACT+TGG - chr4_1:76136533-76136552 None:intergenic 45.0%
CAACTCTTCAAATCGAGCAC+GGG - chr4_1:76136592-76136611 None:intergenic 45.0%
!! TGACTTGTTCCGGAAGACAA+TGG + chr4_1:76136617-76136636 Msa0573090:CDS 45.0%
! GACTTGTTCCGGAAGACAAT+GGG + chr4_1:76136618-76136637 Msa0573090:CDS 45.0%
! TTCTTGTTGGTGGAAGCACA+AGG + chr4_1:76136700-76136719 Msa0573090:CDS 45.0%
! TGGAAGCACAAGGATTCCAA+AGG + chr4_1:76136710-76136729 Msa0573090:CDS 45.0%
TGGAAAGGAACCAAACAAGG+GGG + chr4_1:76136761-76136780 Msa0573090:CDS 45.0%
CAAAGGCAACTGCTTCATCA+GGG - chr4_1:76136791-76136810 None:intergenic 45.0%
!!! GTGCAAGGAAGCATTTTGAG+TGG + chr4_1:76136819-76136838 Msa0573090:CDS 45.0%
!!! GCAAGGAAGCATTTTGAGTG+GGG + chr4_1:76136821-76136840 Msa0573090:CDS 45.0%
!!! ACACCTGGGATTTTTTGGTG+GGG - chr4_1:76137079-76137098 None:intergenic 45.0%
! AGTTGTTTGCTGATCCTGGT+AGG - chr4_1:76137108-76137127 None:intergenic 45.0%
ACAAAGGATTGCCGTCTTCT+CGG + chr4_1:76137279-76137298 Msa0573090:CDS 45.0%
!! CTCGGGAACTTTGATTTGTC+TGG + chr4_1:76137297-76137316 Msa0573090:CDS 45.0%
AAACAAACCTTGGAGCTGGT+GGG - chr4_1:76137326-76137345 None:intergenic 45.0%
AAAACAAACCTTGGAGCTGG+TGG - chr4_1:76137327-76137346 None:intergenic 45.0%
CACAAAACAAACCTTGGAGC+TGG - chr4_1:76137330-76137349 None:intergenic 45.0%
CGAGGAAGACAAGAAAGTGA+AGG + chr4_1:76137609-76137628 Msa0573090:CDS 45.0%
!! GGACAAACTTGCTGACAAGT+TGG + chr4_1:76137699-76137718 Msa0573090:CDS 45.0%
!! CCGTGAAAGAAGCACTTGAA+TGG + chr4_1:76137752-76137771 Msa0573090:CDS 45.0%
!! GAAAGAAGCACTTGAATGGC+TGG + chr4_1:76137756-76137775 Msa0573090:CDS 45.0%
!!! GCTTGTTTTGTGACTTTCCC+GGG + chr4_1:76138201-76138220 Msa0573090:three_prime_UTR 45.0%
CGCAGTAGAGCGACTTACAA+AGG + chr4_1:76134376-76134395 Msa0573090:five_prime_UTR 50.0%
TGGGATTGCCTCTTGTGTGT+AGG - chr4_1:76134415-76134434 None:intergenic 50.0%
CACACAAGAGGCAATCCCAT+TGG + chr4_1:76134416-76134435 Msa0573090:five_prime_UTR 50.0%
ATGGCTCGCTCTTCTTCTTG+CGG + chr4_1:76134603-76134622 Msa0573090:CDS 50.0%
AGGAAGGGACCACCAAGTTA+GGG + chr4_1:76135367-76135386 Msa0573090:CDS 50.0%
CGATGAGAGATTGATTGGGG+AGG + chr4_1:76135515-76135534 Msa0573090:CDS 50.0%
!! TCATGGCACTGACTTCCTCA+GGG - chr4_1:76135828-76135847 None:intergenic 50.0%
!! ATCATGGCACTGACTTCCTC+AGG - chr4_1:76135829-76135848 None:intergenic 50.0%
! GAAACCGCTGAAGCATTCCT+TGG + chr4_1:76135865-76135884 Msa0573090:CDS 50.0%
CTTGCCAAGGAATGCTTCAG+CGG - chr4_1:76135872-76135891 None:intergenic 50.0%
CAAGACTATTCGTGATGCCG+TGG + chr4_1:76135888-76135907 Msa0573090:CDS 50.0%
CTTCAATGATGCTCAGAGGC+AGG + chr4_1:76136027-76136046 Msa0573090:CDS 50.0%
TCCATAAGCAATGGCAGCAG+CGG - chr4_1:76136113-76136132 None:intergenic 50.0%
AACGGAGATACCCATCTTGG+AGG + chr4_1:76136244-76136263 Msa0573090:CDS 50.0%
CTCTGATCAAAGTCCTCACC+TGG - chr4_1:76136384-76136403 None:intergenic 50.0%
! AGCAAGGACAACAGAGCACT+TGG + chr4_1:76136456-76136475 Msa0573090:CDS 50.0%
! ACAGAGCACTTGGAAAGCTG+AGG + chr4_1:76136466-76136485 Msa0573090:CDS 50.0%
AGCACTTGGAAAGCTGAGGA+GGG + chr4_1:76136470-76136489 Msa0573090:CDS 50.0%
CTGGCTACTAAGAGCTCTCT+TGG - chr4_1:76136508-76136527 None:intergenic 50.0%
TCAAATCGAGCACGGGTAAG+TGG - chr4_1:76136585-76136604 None:intergenic 50.0%
TCACAGGTCCCATTGTCTTC+CGG - chr4_1:76136629-76136648 None:intergenic 50.0%
GACAATGGGACCTGTGAAGA+AGG + chr4_1:76136632-76136651 Msa0573090:CDS 50.0%
TCGTCCATTGCCTTCTTCAC+AGG - chr4_1:76136645-76136664 None:intergenic 50.0%
AAGAAGGCAATGGACGATGC+TGG + chr4_1:76136648-76136667 Msa0573090:CDS 50.0%
CCAAAGGCAACTGCTTCATC+AGG - chr4_1:76136792-76136811 None:intergenic 50.0%
CCTGATGAAGCAGTTGCCTT+TGG + chr4_1:76136789-76136808 Msa0573090:CDS 50.0%
!!! AGGAAGCATTTTGAGTGGGG+AGG + chr4_1:76136824-76136843 Msa0573090:CDS 50.0%
!!! GGAAGCATTTTGAGTGGGGA+GGG + chr4_1:76136825-76136844 Msa0573090:CDS 50.0%
GAGGGTGGTGAAGAAACCAA+AGG + chr4_1:76136843-76136862 Msa0573090:CDS 50.0%
GAGGTGCAACATCCAAGAGA+AGG - chr4_1:76136992-76137011 None:intergenic 50.0%
GATGTTGCACCTCTTACCCT+TGG + chr4_1:76136999-76137018 Msa0573090:CDS 50.0%
GTGGGGATGACAGTGTTTCT+AGG - chr4_1:76137062-76137081 None:intergenic 50.0%
CATCCCCACCAAAAAATCCC+AGG + chr4_1:76137073-76137092 Msa0573090:CDS 50.0%
CTGGTAGGTGGTAAACACCT+GGG - chr4_1:76137093-76137112 None:intergenic 50.0%
! TGTTTGCTGATCCTGGTAGG+TGG - chr4_1:76137105-76137124 None:intergenic 50.0%
!! TGAGGGGTGTTGTACTCAAC+CGG + chr4_1:76137205-76137224 Msa0573090:intron 50.0%
AGGTGAGAGGAGTCTCACAA+AGG + chr4_1:76137263-76137282 Msa0573090:CDS 50.0%
CAAAGGATTGCCGTCTTCTC+GGG + chr4_1:76137280-76137299 Msa0573090:CDS 50.0%
TGAGCCAGGAGGAAATTGAC+CGG + chr4_1:76137560-76137579 Msa0573090:CDS 50.0%
! ACTGCTGTTTACCAGAGGTC+AGG + chr4_1:76137856-76137875 Msa0573090:CDS 50.0%
GCGTTTATGCAGAGAACCGT+AGG + chr4_1:76138223-76138242 Msa0573090:three_prime_UTR 50.0%
GCAAGAAGAAGAGCGAGCCA+TGG - chr4_1:76134604-76134623 None:intergenic 55.0%
TGGCTCGCTCTTCTTCTTGC+GGG + chr4_1:76134604-76134623 Msa0573090:CDS 55.0%
GAGGAAGGGACCACCAAGTT+AGG + chr4_1:76135366-76135385 Msa0573090:CDS 55.0%
TGGCAGCTGTCAACCCTGAA+AGG + chr4_1:76135550-76135569 Msa0573090:CDS 55.0%
TTCCTCAGGGCTGAACACCT+TGG - chr4_1:76135815-76135834 None:intergenic 55.0%
TTCACCTGGGACAGTGACCA+CGG - chr4_1:76135908-76135927 None:intergenic 55.0%
GGTCACTGTCCCAGGTGAAT+TGG + chr4_1:76135909-76135928 Msa0573090:intron 55.0%
AATGACACCGGCATCCTTGG+TGG - chr4_1:76136053-76136072 None:intergenic 55.0%
AGCAATGACACCGGCATCCT+TGG - chr4_1:76136056-76136075 None:intergenic 55.0%
!! AAGGATGCCGGTGTCATTGC+TGG + chr4_1:76136055-76136074 Msa0573090:CDS 55.0%
TAAGCAATGGCAGCAGCGGT+GGG - chr4_1:76136109-76136128 None:intergenic 55.0%
ATAAGCAATGGCAGCAGCGG+TGG - chr4_1:76136110-76136129 None:intergenic 55.0%
ACCGCTGCTGCCATTGCTTA+TGG + chr4_1:76136109-76136128 Msa0573090:CDS 55.0%
GAGCACTTGGAAAGCTGAGG+AGG + chr4_1:76136469-76136488 Msa0573090:CDS 55.0%
!! TTTCCACACGGACTTGGTGC+TGG - chr4_1:76136527-76136546 None:intergenic 55.0%
GGGACCTGTGAAGAAGGCAA+TGG + chr4_1:76136638-76136657 Msa0573090:CDS 55.0%
TCAGGGTTGACCCCCTTGTT+TGG - chr4_1:76136774-76136793 None:intergenic 55.0%
TCCTTGCACTGCAGCACCAA+AGG - chr4_1:76136808-76136827 None:intergenic 55.0%
!! AGCATTTTGAGTGGGGAGGG+TGG + chr4_1:76136828-76136847 Msa0573090:CDS 55.0%
CCTGGTAGGTGGTAAACACC+TGG - chr4_1:76137094-76137113 None:intergenic 55.0%
CCAGGTGTTTACCACCTACC+AGG + chr4_1:76137091-76137110 Msa0573090:CDS 55.0%
!! GAGGGGTGTTGTACTCAACC+GGG + chr4_1:76137206-76137225 Msa0573090:intron 55.0%
!! AGGGGTGTTGTACTCAACCG+GGG + chr4_1:76137207-76137226 Msa0573090:intron 55.0%
GGTCAATTTCCTCCTGGCTC+AGG - chr4_1:76137561-76137580 None:intergenic 55.0%
CCATCCGGTCAATTTCCTCC+TGG - chr4_1:76137567-76137586 None:intergenic 55.0%
CCAGGAGGAAATTGACCGGA+TGG + chr4_1:76137564-76137583 Msa0573090:CDS 55.0%
GTCTTCCTCGGCAAACTCCT+CGG - chr4_1:76137599-76137618 None:intergenic 55.0%
GCTGTTTACCAGAGGTCAGG+TGG + chr4_1:76137859-76137878 Msa0573090:CDS 55.0%
GGTTCTCTGCATAAACGCCC+GGG - chr4_1:76138221-76138240 None:intergenic 55.0%
CGGTTCTCTGCATAAACGCC+CGG - chr4_1:76138222-76138241 None:intergenic 55.0%
TGGGGAGGCTGCGAAGAATC+TGG + chr4_1:76135530-76135549 Msa0573090:CDS 60.0%
! GACCAAGGTGTTCAGCCCTG+AGG + chr4_1:76135810-76135829 Msa0573090:CDS 60.0%
TAGCCAGCACCAAGTCCGTG+TGG + chr4_1:76136521-76136540 Msa0573090:CDS 60.0%
!! GCCTTTGGTGCTGCAGTGCA+AGG + chr4_1:76136804-76136823 Msa0573090:CDS 60.0%
CTGGAATCCCACCAGCTCCA+AGG + chr4_1:76137316-76137335 Msa0573090:CDS 60.0%
! AGGGCAGAAGACAAGGGCAC+AGG + chr4_1:76137496-76137515 Msa0573090:CDS 60.0%
TGAAAAGGGACGCCTGAGCC+AGG + chr4_1:76137546-76137565 Msa0573090:CDS 60.0%
CCTCGGCTTCACGAACCATC+CGG - chr4_1:76137582-76137601 None:intergenic 60.0%
TGAAGCCGAGGAGTTTGCCG+AGG + chr4_1:76137591-76137610 Msa0573090:CDS 60.0%
GAGCTCCAGGTGGTGCATCA+GGG + chr4_1:76137881-76137900 Msa0573090:CDS 60.0%
AGCTCCAGGTGGTGCATCAG+GGG + chr4_1:76137882-76137901 Msa0573090:CDS 60.0%
TGGTGCATCAGGGGAAGGAG+AGG + chr4_1:76137891-76137910 Msa0573090:CDS 60.0%
GATGCCGTGGTCACTGTCCC+AGG + chr4_1:76135901-76135920 Msa0573090:CDS 65.0%
TGCTCAGAGGCAGGCCACCA+AGG + chr4_1:76136036-76136055 Msa0573090:CDS 65.0%
AGGCAGGCCACCAAGGATGC+CGG + chr4_1:76136043-76136062 Msa0573090:CDS 65.0%
AAAGGGACGCCTGAGCCAGG+AGG + chr4_1:76137549-76137568 Msa0573090:CDS 65.0%
CCGGATGGTTCGTGAAGCCG+AGG + chr4_1:76137579-76137598 Msa0573090:CDS 65.0%
CTGGAGCTCCACCTGACCTC+TGG - chr4_1:76137870-76137889 None:intergenic 65.0%
CAGAGGTCAGGTGGAGCTCC+AGG + chr4_1:76137868-76137887 Msa0573090:CDS 65.0%
AGGTCAGGTGGAGCTCCAGG+TGG + chr4_1:76137871-76137890 Msa0573090:CDS 65.0%
GGAGCTCCAGGTGGTGCATC+AGG + chr4_1:76137880-76137899 Msa0573090:CDS 65.0%
CCTTCCCCTGATGCACCACC+TGG - chr4_1:76137889-76137908 None:intergenic 65.0%
CCAGGTGGTGCATCAGGGGA+AGG + chr4_1:76137886-76137905 Msa0573090:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 76134363 76138338 76134363 ID=Msa0573090;Name=Msa0573090
chr4_1 mRNA 76134363 76138338 76134363 ID=Msa0573090-mRNA-1;Parent=Msa0573090;Name=Msa0573090-mRNA-1;_AED=0.04;_eAED=0.04;_QI=240|1|1|1|1|1|8|393|669
chr4_1 exon 76134363 76134657 76134363 ID=Msa0573090-mRNA-1:exon:26473;Parent=Msa0573090-mRNA-1
chr4_1 exon 76135337 76135607 76135337 ID=Msa0573090-mRNA-1:exon:26474;Parent=Msa0573090-mRNA-1
chr4_1 exon 76135708 76135922 76135708 ID=Msa0573090-mRNA-1:exon:26475;Parent=Msa0573090-mRNA-1
chr4_1 exon 76136023 76136265 76136023 ID=Msa0573090-mRNA-1:exon:26476;Parent=Msa0573090-mRNA-1
chr4_1 exon 76136385 76136864 76136385 ID=Msa0573090-mRNA-1:exon:26477;Parent=Msa0573090-mRNA-1
chr4_1 exon 76136985 76137139 76136985 ID=Msa0573090-mRNA-1:exon:26478;Parent=Msa0573090-mRNA-1
chr4_1 exon 76137255 76137337 76137255 ID=Msa0573090-mRNA-1:exon:26479;Parent=Msa0573090-mRNA-1
chr4_1 exon 76137438 76138338 76137438 ID=Msa0573090-mRNA-1:exon:26480;Parent=Msa0573090-mRNA-1
chr4_1 five_prime_UTR 76134363 76134602 76134363 ID=Msa0573090-mRNA-1:five_prime_utr;Parent=Msa0573090-mRNA-1
chr4_1 CDS 76134603 76134657 76134603 ID=Msa0573090-mRNA-1:cds;Parent=Msa0573090-mRNA-1
chr4_1 CDS 76135337 76135607 76135337 ID=Msa0573090-mRNA-1:cds;Parent=Msa0573090-mRNA-1
chr4_1 CDS 76135708 76135922 76135708 ID=Msa0573090-mRNA-1:cds;Parent=Msa0573090-mRNA-1
chr4_1 CDS 76136023 76136265 76136023 ID=Msa0573090-mRNA-1:cds;Parent=Msa0573090-mRNA-1
chr4_1 CDS 76136385 76136864 76136385 ID=Msa0573090-mRNA-1:cds;Parent=Msa0573090-mRNA-1
chr4_1 CDS 76136985 76137139 76136985 ID=Msa0573090-mRNA-1:cds;Parent=Msa0573090-mRNA-1
chr4_1 CDS 76137255 76137337 76137255 ID=Msa0573090-mRNA-1:cds;Parent=Msa0573090-mRNA-1
chr4_1 CDS 76137438 76137945 76137438 ID=Msa0573090-mRNA-1:cds;Parent=Msa0573090-mRNA-1
chr4_1 three_prime_UTR 76137946 76138338 76137946 ID=Msa0573090-mRNA-1:three_prime_utr;Parent=Msa0573090-mRNA-1
Gene Sequence

>Msa0573090

ATGGCTCGCTCTTCTTCTTGCGGGTCTCTGTTTCTTCTCACCATCATCTCCTTAGGATGTCTATTTGCAACATCTGCTGCAAAAGAGGAAGGGACCACCAAGTTAGGGACTGTTATTGGGATAGATCTTGGAACAACATATTCATGTGTTGGTGTTTACAAGAACGGACATGTTGAAATCATAGCCAACGACCAAGGAAATCGTATCACACCATCATGGGTTTCTTTCACCGACGATGAGAGATTGATTGGGGAGGCTGCGAAGAATCTGGCAGCTGTCAACCCTGAAAGGACCATCTTTGATGTCAAGAGACTTATCGGAAGAAAATTTGAGGATAAGGAAGTTCAAAGAGACATGAAGCTTGTTCCTTACAAGATTGTCAACAAGGATGGAAAACCATACATTCAGGTCAGAGTAAAGGATGGTGAGACCAAGGTGTTCAGCCCTGAGGAAGTCAGTGCCATGATTCTGACTAAGATGAAGGAAACCGCTGAAGCATTCCTTGGCAAGACTATTCGTGATGCCGTGGTCACTGTCCCAGCTTACTTCAATGATGCTCAGAGGCAGGCCACCAAGGATGCCGGTGTCATTGCTGGTTTGAACGTGGCTAGAATCATTAATGAACCCACCGCTGCTGCCATTGCTTATGGATTGGACAAGAAAGGTGGAGAGAAGAACATTCTTGTCTTTGATCTTGGAGGTGGAACTTTTGATGTCAGTATCTTGACAATTGACAATGGTGTTTTTGAGGTTCTTTCTACAAACGGAGATACCCATCTTGGAGGTGAGGACTTTGATCAGAGAATAATGGAGTACTTCATTAAATTGATCAAGAAAAAGCATAGCAAGGATATTAGCAAGGACAACAGAGCACTTGGAAAGCTGAGGAGGGAGAGTGAGCGTGCCAAGAGAGCTCTTAGTAGCCAGCACCAAGTCCGTGTGGAAATTGAGTCACTTTTTGATGGCGTTGATTTCTCTGAGCCACTTACCCGTGCTCGATTTGAAGAGTTGAACAATGACTTGTTCCGGAAGACAATGGGACCTGTGAAGAAGGCAATGGACGATGCTGGATTACAGAAGAATCAAATTGATGAGATTGTTCTTGTTGGTGGAAGCACAAGGATTCCAAAGGTACAACAACTTTTGAAGGATTACTTTGATGGAAAGGAACCAAACAAGGGGGTCAACCCTGATGAAGCAGTTGCCTTTGGTGCTGCAGTGCAAGGAAGCATTTTGAGTGGGGAGGGTGGTGAAGAAACCAAAGATATCCTTCTCTTGGATGTTGCACCTCTTACCCTTGGAATTGAAACTGTTGGAGGAGTGATGACAAAGTTGATTCCTAGAAACACTGTCATCCCCACCAAAAAATCCCAGGTGTTTACCACCTACCAGGATCAGCAAACAACTGTTTCTATTCAGGTGTTTGAAGGTGAGAGGAGTCTCACAAAGGATTGCCGTCTTCTCGGGAACTTTGATTTGTCTGGAATCCCACCAGCTCCAAGAGGTACCCCTCAAATTGAAGTGACCTTTGAAGTAGATGCAAACGGTATTCTAAATGTTAGGGCAGAAGACAAGGGCACAGGTAAATCAGAAAAGATCACCATTACAAATGAAAAGGGACGCCTGAGCCAGGAGGAAATTGACCGGATGGTTCGTGAAGCCGAGGAGTTTGCCGAGGAAGACAAGAAAGTGAAGGAAAGAATTGATGCTCGGAATGCTCTTGAAACCTATGTCTACAACATGAAAAACCAAATCAGTGACAAGGACAAACTTGCTGACAAGTTGGAATCAGATGAAAAGGAAAAAATTGAGGCTGCCGTGAAAGAAGCACTTGAATGGCTGGATGACAACCAAACTGTTGAGAAAGAAGAGTTTGAAGAGAAGCTTAAAGAAGTTGAAGCCGTTTGCAACCCAATTATCACTGCTGTTTACCAGAGGTCAGGTGGAGCTCCAGGTGGTGCATCAGGGGAAGGAGAGGATGAAGATGAAGACTCTCGCGACGAGCTCTAG
Protein sequence

>Msa0573090

MARSSSCGSLFLLTIISLGCLFATSAAKEEGTTKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVSFTDDERLIGEAAKNLAAVNPERTIFDVKRLIGRKFEDKEVQRDMKLVPYKIVNKDGKPYIQVRVKDGETKVFSPEEVSAMILTKMKETAEAFLGKTIRDAVVTVPAYFNDAQRQATKDAGVIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRIMEYFIKLIKKKHSKDISKDNRALGKLRRESERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNNDLFRKTMGPVKKAMDDAGLQKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAFGAAVQGSILSGEGGEETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGNFDLSGIPPAPRGTPQIEVTFEVDANGILNVRAEDKGTGKSEKITITNEKGRLSQEEIDRMVREAEEFAEEDKKVKERIDARNALETYVYNMKNQISDKDKLADKLESDEKEKIEAAVKEALEWLDDNQTVEKEEFEEKLKEVEAVCNPIITAVYQRSGGAPGGASGEGEDEDEDSRDEL*