AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0560090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0560090 MtrunA17_Chr4g0050021 93.423 669 6 2 1 631 1 669 0.0 1281
Msa0560090 MtrunA17_Chr2g0279481 75.837 687 108 10 1 631 1 685 0.0 1019
Msa0560090 MtrunA17_Chr8g0382231 38.998 659 275 12 18 619 27 615 1.26e-151 451
Msa0560090 MtrunA17_Chr2g0303541 38.339 626 306 10 19 597 1 593 1.03e-137 416
Msa0560090 MtrunA17_Chr5g0401341 39.502 562 296 14 23 561 5 545 1.33e-120 372
Msa0560090 MtrunA17_Chr2g0285511 38.748 591 316 15 19 587 1 567 1.54e-120 370
Msa0560090 MtrunA17_Chr2g0320691 34.551 602 318 10 27 583 6 576 3.50e-120 370
Msa0560090 MtrunA17_Chr8g0374011 34.400 625 332 12 34 595 10 619 1.62e-117 364
Msa0560090 MtrunA17_Chr1g0150191 40.881 477 258 7 39 502 22 487 1.43e-112 350
Msa0560090 MtrunA17_Chr5g0401451 35.334 583 270 11 33 568 29 551 6.33e-112 349
Msa0560090 MtrunA17_Chr4g0010091 33.990 609 313 10 33 601 24 583 2.52e-110 344
Msa0560090 MtrunA17_Chr1g0191711 34.705 559 293 11 29 572 43 544 4.09e-107 334
Msa0560090 MtrunA17_Chr1g0207461 37.500 520 268 10 23 512 5 497 1.16e-106 335
Msa0560090 MtrunA17_Chr1g0181181 37.008 508 274 8 23 510 5 486 2.83e-104 327
Msa0560090 MtrunA17_Chr4g0053841 35.053 562 313 11 33 577 2 528 7.72e-101 319
Msa0560090 MtrunA17_Chr8g0367891 39.689 514 251 13 23 507 5 488 2.80e-100 318
Msa0560090 MtrunA17_Chr1g0195911 32.736 614 370 13 38 631 31 621 3.12e-99 316
Msa0560090 MtrunA17_Chr7g0245201 33.218 578 282 13 40 570 57 577 4.74e-98 313
Msa0560090 MtrunA17_Chr1g0199631 36.494 559 305 14 62 597 8 539 7.01e-98 311
Msa0560090 MtrunA17_Chr4g0076521 36.634 505 282 11 23 514 5 484 1.45e-96 308
Msa0560090 MtrunA17_Chr2g0290741 35.050 505 282 9 23 514 5 476 2.50e-91 293
Msa0560090 MtrunA17_Chr7g0268781 32.450 604 341 15 38 606 31 602 9.24e-91 293
Msa0560090 MtrunA17_Chr5g0412591 36.433 527 255 13 23 507 5 493 4.04e-90 291
Msa0560090 MtrunA17_Chr3g0108331 32.373 590 318 13 33 602 13 541 3.90e-87 282
Msa0560090 MtrunA17_Chr5g0432861 33.605 491 274 8 33 504 14 471 2.19e-85 278
Msa0560090 MtrunA17_Chr4g0003891 31.754 422 189 10 207 585 26 391 2.42e-58 202
Msa0560090 MtrunA17_Chr2g0332281 31.263 467 217 10 216 631 10 423 7.22e-58 201
Msa0560090 MtrunA17_Chr1g0163311 31.034 493 261 17 47 501 6 457 2.01e-49 180
Msa0560090 MtrunA17_Chr4g0037661 28.933 553 323 17 46 568 5 517 1.26e-47 176
Msa0560090 MtrunA17_Chr4g0023801 27.544 570 336 18 47 585 7 530 3.66e-43 163
Msa0560090 MtrunA17_Chr1g0206621 43.796 137 75 1 51 185 75 211 2.18e-32 125
Msa0560090 MtrunA17_Chr2g0280541 26.969 419 271 8 110 521 1 391 1.33e-29 122
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0560090 AT5G64330.1 65.139 720 142 14 1 611 2 721 0.0 875
Msa0560090 AT5G64330.2 64.706 646 122 13 1 540 2 647 0.0 775
Msa0560090 AT5G64330.3 64.837 583 106 11 57 540 6 588 0.0 701
Msa0560090 AT1G30440.1 38.328 634 350 14 19 616 1 629 1.04e-131 402
Msa0560090 AT5G10250.2 37.224 634 253 15 30 599 36 588 5.82e-130 396
Msa0560090 AT5G10250.1 37.239 623 253 15 30 599 36 573 2.42e-126 386
Msa0560090 AT5G03250.1 41.879 511 262 11 25 509 7 508 8.67e-121 371
Msa0560090 AT5G13600.1 38.579 591 303 18 19 585 1 555 1.38e-115 358
Msa0560090 AT3G44820.1 33.223 602 330 8 27 580 6 583 2.99e-111 348
Msa0560090 AT2G14820.2 38.178 516 270 11 23 512 5 497 4.93e-111 347
Msa0560090 AT2G14820.1 38.178 516 270 11 23 512 5 497 4.93e-111 347
Msa0560090 AT5G67440.3 39.315 496 262 10 23 503 5 476 3.20e-109 341
Msa0560090 AT5G67440.1 39.315 496 262 10 23 503 5 476 3.20e-109 341
Msa0560090 AT4G31820.1 38.224 518 267 13 23 524 5 485 4.57e-107 335
Msa0560090 AT5G67385.1 38.833 497 260 10 33 512 14 483 2.62e-106 334
Msa0560090 AT1G67900.5 37.761 527 274 9 23 510 5 516 7.32e-106 333
Msa0560090 AT1G67900.1 37.761 527 274 9 23 510 5 516 7.32e-106 333
Msa0560090 AT1G67900.3 37.761 527 274 9 23 510 5 516 7.32e-106 333
Msa0560090 AT1G67900.6 37.761 527 274 9 23 510 5 516 7.32e-106 333
Msa0560090 AT1G67900.2 37.761 527 274 9 23 510 5 516 7.32e-106 333
Msa0560090 AT1G67900.4 37.761 527 274 9 23 510 5 516 7.32e-106 333
Msa0560090 AT4G37590.1 37.168 565 275 14 23 561 5 515 1.88e-105 331
Msa0560090 AT5G66560.1 32.710 642 331 13 34 592 9 632 6.17e-103 327
Msa0560090 AT5G48800.1 36.283 565 339 9 37 598 34 580 1.52e-101 322
Msa0560090 AT5G67440.2 39.651 459 239 9 59 503 5 439 1.50e-100 317
Msa0560090 AT3G08570.1 34.370 579 332 11 40 602 30 576 6.54e-100 318
Msa0560090 AT1G03010.1 33.710 620 340 16 23 603 16 603 9.91e-99 315
Msa0560090 AT1G03010.2 34.110 601 326 15 42 603 7 576 1.32e-97 311
Msa0560090 AT2G47860.1 35.140 572 311 12 38 580 32 572 1.61e-97 312
Msa0560090 AT1G03010.3 34.110 601 326 15 42 603 33 602 3.64e-97 311
Msa0560090 AT3G08660.1 35.701 549 294 13 40 577 30 530 4.63e-96 306
Msa0560090 AT2G30520.1 34.386 570 284 15 34 577 20 525 5.22e-96 306
Msa0560090 AT5G66560.3 33.065 620 314 13 56 592 2 603 2.05e-95 306
Msa0560090 AT5G47800.3 36.895 496 270 10 23 501 5 474 5.42e-95 303
Msa0560090 AT5G47800.1 36.895 496 270 10 23 501 5 474 5.42e-95 303
Msa0560090 AT5G47800.4 36.895 496 270 10 23 501 5 474 5.42e-95 303
Msa0560090 AT5G47800.2 37.097 496 269 10 23 501 118 587 1.27e-93 303
Msa0560090 AT5G67385.4 38.065 465 244 10 65 512 1 438 1.12e-92 297
Msa0560090 AT5G67385.5 38.065 465 244 10 65 512 1 438 1.12e-92 297
Msa0560090 AT5G67385.2 38.065 465 244 10 65 512 1 438 1.12e-92 297
Msa0560090 AT5G67385.3 38.065 465 244 10 65 512 1 438 1.12e-92 297
Msa0560090 AT2G47860.3 33.782 595 311 13 38 580 32 595 3.22e-92 298
Msa0560090 AT5G66560.4 34.982 546 298 11 86 592 66 593 6.60e-92 297
Msa0560090 AT4G31820.2 37.740 469 240 12 71 524 1 432 1.62e-91 293
Msa0560090 AT2G23050.1 35.897 507 257 14 23 515 5 457 5.85e-90 287
Msa0560090 AT3G26490.1 35.283 530 271 14 25 507 7 511 4.05e-89 288
Msa0560090 AT3G26490.3 35.283 530 271 14 25 507 7 511 4.05e-89 288
Msa0560090 AT3G26490.4 35.283 530 271 14 25 507 7 511 4.05e-89 288
Msa0560090 AT3G50840.1 32.879 587 311 15 38 595 10 542 2.49e-88 286
Msa0560090 AT3G08660.3 35.135 518 277 13 71 577 1 470 1.01e-84 275
Msa0560090 AT2G30520.2 33.519 540 269 15 64 577 2 477 5.44e-83 271
Msa0560090 AT2G30520.3 33.519 540 269 15 64 577 2 477 5.44e-83 271
Msa0560090 AT5G03250.2 39.753 405 211 10 129 509 1 396 1.10e-77 255
Msa0560090 AT3G50840.2 32.679 560 294 15 65 595 1 506 2.28e-76 253
Msa0560090 AT3G50840.3 32.679 560 294 15 65 595 1 506 2.28e-76 253
Msa0560090 AT3G49970.1 32.203 531 260 13 56 570 6 452 1.09e-70 238
Msa0560090 AT3G49970.2 32.203 531 260 13 56 570 6 452 1.09e-70 238
Msa0560090 AT5G66560.2 32.245 490 244 11 34 453 9 480 1.09e-69 234
Msa0560090 AT2G47860.4 36.036 444 225 11 38 453 32 444 1.15e-69 233
Msa0560090 AT3G08660.2 34.732 429 237 9 40 460 30 423 4.38e-69 231
Msa0560090 AT2G47860.6 34.261 467 225 12 38 453 32 467 8.91e-65 221
Msa0560090 AT3G26490.2 32.773 476 248 14 25 453 7 457 1.15e-64 221
Msa0560090 AT1G52770.1 31.864 499 221 15 205 631 3 454 3.83e-61 211
Msa0560090 AT2G47860.5 31.809 481 272 11 129 580 1 454 7.58e-59 206
Msa0560090 AT2G47860.2 31.809 481 272 11 129 580 1 454 7.58e-59 206
Msa0560090 AT2G23050.2 34.987 383 192 11 129 503 1 334 1.67e-57 198
Msa0560090 AT5G48130.1 27.448 572 341 15 37 576 32 561 3.29e-57 204
Msa0560090 AT3G15570.1 29.828 466 221 10 230 631 29 452 6.54e-56 196
Msa0560090 AT3G19850.1 30.021 483 293 9 44 502 3 464 2.06e-55 197
Msa0560090 AT1G50280.1 28.778 483 286 15 46 497 5 460 7.88e-47 173
Msa0560090 AT1G50280.2 29.748 437 255 13 86 497 18 427 1.67e-45 169
Msa0560090 AT5G17580.2 28.398 493 296 13 40 515 16 468 2.23e-39 152
Msa0560090 AT5G17580.1 28.398 493 296 13 40 515 1 453 2.36e-39 152
Msa0560090 AT3G03510.1 26.394 538 265 18 94 604 4 437 8.29e-35 137
Msa0560090 AT3G22104.1 27.473 455 278 13 46 488 6 420 4.75e-32 130
Msa0560090 AT3G22104.4 25.849 383 235 10 115 488 3 345 5.09e-19 90.5
Msa0560090 AT3G22104.2 25.849 383 235 10 115 488 3 345 5.09e-19 90.5
Msa0560090 AT3G22104.3 25.849 383 235 10 115 488 3 345 5.09e-19 90.5
Msa0560090 AT3G49900.1 33.000 200 107 7 34 221 55 239 5.16e-14 75.5
Msa0560090 AT3G49900.1 33.981 103 63 3 407 508 214 312 4.10e-11 66.2
Msa0560090 AT3G49900.2 33.000 200 107 7 34 221 55 239 5.48e-14 75.5

Find 156 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTCATTTCGTTCCATTT+TGG 0.129719 4_1:+59342678 None:intergenic
CTGTTCGGTTCTTCAGAAAT+TGG 0.136199 4_1:+59340581 None:intergenic
GGACTTCATATGATTGTTTC+TGG 0.160796 4_1:-59342390 Msa0560090:CDS
CCACTCTTGCCTTGGCATTC+AGG 0.181350 4_1:+59341910 None:intergenic
CCTTTCATCGACAAAGTTTC+AGG 0.183368 4_1:-59341841 Msa0560090:CDS
ACAGCAGCTGGAAGGGAATA+TGG 0.207369 4_1:-59343825 Msa0560090:CDS
ACAATTTACTTATTGATATA+TGG 0.215699 4_1:+59346230 None:intergenic
TAGAGTCATTACTGCTATTA+AGG 0.220033 4_1:-59342574 Msa0560090:CDS
GGAAGCTGGCTTCTCCAATT+TGG 0.236985 4_1:+59343562 None:intergenic
AAAATGAACGACTGCCATTA+AGG 0.241454 4_1:-59340967 Msa0560090:CDS
TACGCCCACCTTATTCCTTT+TGG 0.245910 4_1:+59342729 None:intergenic
TAGCTGTTGTCCATCCTTCT+TGG 0.246421 4_1:+59340801 None:intergenic
ACTTGCACTACTACCCTTAA+TGG 0.258617 4_1:+59340953 None:intergenic
GAGTGTGAAAACAAAATATT+TGG 0.258800 4_1:-59340744 Msa0560090:CDS
TTTGGAGCTTCAACATGATA+TGG 0.264232 4_1:-59340726 Msa0560090:CDS
ATTACTGCTATTAAGGTAAA+AGG 0.292860 4_1:-59342567 Msa0560090:CDS
TAATGCATTATGCAACTAAA+TGG 0.300901 4_1:-59342515 Msa0560090:CDS
AGCAACTCCATAGCAGAATT+TGG 0.307927 4_1:+59342998 None:intergenic
TTTGAGAGGTATCAGTTCTT+AGG 0.310579 4_1:+59340500 None:intergenic
TTGACAGCAAGCAACATTTC+CGG 0.311281 4_1:-59342969 Msa0560090:CDS
TGAAGCTTTCGTCGCTCTTC+CGG 0.314769 4_1:+59342704 None:intergenic
TTGTGAGAAACAAGAGATAA+AGG 0.315932 4_1:+59346361 None:intergenic
ATAATTATCTATCATAATTT+CGG 0.318333 4_1:+59346498 None:intergenic
TCTATCATAATTTCGGTAAT+CGG 0.322706 4_1:+59346505 None:intergenic
TTCAATCTTAACACCATGTT+TGG 0.322863 4_1:+59343782 None:intergenic
GCTGCAAGTTCAAATGCTTC+AGG 0.329025 4_1:+59343020 None:intergenic
AAAGCCTATCAAAGCATAAA+AGG 0.334155 4_1:-59345376 Msa0560090:five_prime_UTR
CTAGCCAACAGCTCTCTAAA+AGG 0.341374 4_1:-59340896 Msa0560090:CDS
TGTTGCTTGTTTCCTCTCCT+TGG 0.344019 4_1:+59342460 None:intergenic
CGAAAGCTTCAAGCCCAAAA+TGG 0.344305 4_1:-59342692 Msa0560090:CDS
AGTGATCTTCAAGTCCAAAT+TGG 0.350920 4_1:-59343576 Msa0560090:CDS
ATCTGAGATATACAAATATA+TGG 0.359973 4_1:+59346413 None:intergenic
GATACTCAGCAGCACATCTT+AGG 0.365794 4_1:+59342946 None:intergenic
GTGCTAATCCAAAAGGAATA+AGG 0.382939 4_1:-59342737 Msa0560090:CDS
AACAGGAAAACACTTCTAGA+AGG 0.384225 4_1:-59340839 Msa0560090:CDS
CAGCAGCTGGAAGGGAATAT+GGG 0.385850 4_1:-59343824 Msa0560090:CDS
TTGAAGATGTTTCAATCCTT+AGG 0.401499 4_1:-59342611 Msa0560090:CDS
TCAGAAAAGGATTGTCTACT+TGG 0.415289 4_1:+59341954 None:intergenic
CTTCTAGTTGTCTTTCTGTT+CGG 0.415753 4_1:+59340566 None:intergenic
AAATGTGGAAAATCATGATA+TGG 0.424301 4_1:-59340606 Msa0560090:CDS
CTTTCATGCTCAGTTAGTGT+TGG 0.426046 4_1:+59341055 None:intergenic
TCCTGTTTGTTACCATTGGT+TGG 0.426066 4_1:+59340855 None:intergenic
GTGTCGTTCCCCGCCAGTCC+TGG 0.426869 4_1:+59342489 None:intergenic
CTATAGACTCGCTGCATCTT+CGG 0.430254 4_1:+59342772 None:intergenic
AACTAAATGGCTACCAGGAC+TGG 0.435309 4_1:-59342502 Msa0560090:CDS
ATAGCTATCTTATTCAAGTC+GGG 0.438601 4_1:+59343062 None:intergenic
AAGCCTTGCCACTCTTGCCT+TGG 0.438871 4_1:+59341902 None:intergenic
CTATCATAATTTCGGTAATC+GGG 0.442784 4_1:+59346506 None:intergenic
TCAAATGCTTCAGGCCCTCC+AGG 0.443506 4_1:+59343029 None:intergenic
AAATGAACGACTGCCATTAA+GGG 0.444360 4_1:-59340966 Msa0560090:CDS
ATAGATTGTTTGAAGGAGAA+AGG 0.446355 4_1:-59345430 Msa0560090:intron
TGTCATAATAGATTGTTTGA+AGG 0.446619 4_1:-59345437 Msa0560090:intron
AGCTAGTGCCTCCTGATTGG+TGG 0.449333 4_1:-59342635 Msa0560090:CDS
CCTGAAACTTTGTCGATGAA+AGG 0.449456 4_1:+59341841 None:intergenic
TGCGTGCATGCAGGCGTCAA+TGG 0.453590 4_1:+59340994 None:intergenic
AAACATGGTGTTAAGATTGA+AGG 0.459793 4_1:-59343780 Msa0560090:CDS
ATCAGCTAGTGCCTCCTGAT+TGG 0.463225 4_1:-59342638 Msa0560090:CDS
CAAAAGGGTAGCAAAAGTAT+TGG 0.469165 4_1:-59345407 Msa0560090:five_prime_UTR
CACATGCTTGTGATCAGAAA+AGG 0.471840 4_1:+59341941 None:intergenic
CAAAATGTAAAGAGATGAAA+AGG 0.473253 4_1:+59346196 None:intergenic
ACCAACCAATGGTAACAAAC+AGG 0.475079 4_1:-59340856 Msa0560090:CDS
TGCAGAAGCTTTACCTGAGT+CGG 0.477481 4_1:-59341814 Msa0560090:CDS
ACATCTTCAAACCACCAATC+AGG 0.482701 4_1:+59342624 None:intergenic
CTTAACACCATGTTTGGTTG+AGG 0.483711 4_1:+59343788 None:intergenic
AGATTTGAACTGATTGGTGC+TGG 0.486553 4_1:-59342540 Msa0560090:CDS
TACCTTGTGCAAGTGGAAGC+TGG 0.487213 4_1:+59343548 None:intergenic
ATGCTGTCCAAAAGTAGAAA+AGG 0.489698 4_1:+59340427 None:intergenic
AAATGGCTACCAGGACTGGC+GGG 0.494907 4_1:-59342498 Msa0560090:CDS
AAAGCTTGTGCTAATCCAAA+AGG 0.497825 4_1:-59342744 Msa0560090:CDS
ATAGCTATGGATGATCTCCC+TGG 0.498197 4_1:-59343047 Msa0560090:CDS
ATTTGGACTTGAAGATCACT+TGG 0.499439 4_1:+59343579 None:intergenic
CGGGGTCGCGAGAATCATAT+AGG 0.499847 4_1:+59343081 None:intergenic
TTTGAAGGAGAAAGGCAAAA+GGG 0.503476 4_1:-59345422 Msa0560090:five_prime_UTR
GAAGCGTCTCTGTCGTGTAA+TGG 0.510244 4_1:-59341032 Msa0560090:CDS
GAAAAGATACCTTGTGCAAG+TGG 0.511668 4_1:+59343541 None:intergenic
GTTTGAAGGAGAAAGGCAAA+AGG 0.512427 4_1:-59345423 Msa0560090:five_prime_UTR
CAACACTAACTGAGCATGAA+AGG 0.512884 4_1:-59341054 Msa0560090:CDS
GGATCTTGTTCAGAGGTTGT+TGG 0.513765 4_1:-59342015 Msa0560090:CDS
GGAATAAGGTGGGCGTATAC+CGG 0.514993 4_1:-59342723 Msa0560090:CDS
GGCAAGAGTGGCAAGGCTTG+TGG 0.518056 4_1:-59341898 Msa0560090:CDS
CATAGCTATCTTATTCAAGT+CGG 0.522649 4_1:+59343061 None:intergenic
AAGTGAAACAGCAGCTGGAA+GGG 0.532024 4_1:-59343832 Msa0560090:CDS
AACATGGTGTTAAGATTGAA+GGG 0.533230 4_1:-59343779 Msa0560090:CDS
GGTATGAGATTTGAACTGAT+TGG 0.534123 4_1:-59342546 Msa0560090:CDS
CGACTTGAATAAGATAGCTA+TGG 0.536962 4_1:-59343060 Msa0560090:CDS
AGCAAAAGCACACATCAGCT+TGG 0.538253 4_1:-59340670 Msa0560090:CDS
CCTGAATGCCAAGGCAAGAG+TGG 0.539436 4_1:-59341910 Msa0560090:CDS
TAACAAAGTGATCAATCCTA+AGG 0.539725 4_1:+59342595 None:intergenic
CGCAATCTTTCCAAGAAGGA+TGG 0.541041 4_1:-59340811 Msa0560090:CDS
ATGACTGAGGATCTAGAAGA+AGG 0.542789 4_1:-59342918 Msa0560090:CDS
CGAACAGAAAGACAACTAGA+AGG 0.543947 4_1:-59340565 Msa0560090:CDS
CACACATCAGCTTGGACTAG+TGG 0.544231 4_1:-59340662 Msa0560090:CDS
CTCTGAAAAGCTGTCACCGT+GGG 0.544588 4_1:-59342814 Msa0560090:CDS
CTCAAATGAGCTGAAGAAGA+AGG 0.544742 4_1:+59346309 None:intergenic
GGCACTAGCTGATTTCTACT+CGG 0.545730 4_1:+59342648 None:intergenic
CTTGCAGCCAAATTCTGCTA+TGG 0.546691 4_1:-59343005 Msa0560090:CDS
CTTGTTCAAGAACAAACTGA+AGG 0.548683 4_1:-59341984 Msa0560090:CDS
TCAAACCAAGGATCAAAAGA+TGG 0.555075 4_1:-59342343 Msa0560090:CDS
TCAGAAAGTGAAACAGCAGC+TGG 0.555263 4_1:-59343837 Msa0560090:CDS
TATCCTTTGCTATCTAGAAG+TGG 0.555707 4_1:-59343119 Msa0560090:CDS
CTCAGCAGCACATCTTAGGC+CGG 0.556722 4_1:+59342950 None:intergenic
GTAGCGGTGACAACAGTAGC+TGG 0.557016 4_1:-59342419 Msa0560090:CDS
CATAAAAGGCGCGTTTCAGA+AGG 0.560230 4_1:-59345362 Msa0560090:intron
AAAACAAATTAAAGTTTGAG+AGG 0.567532 4_1:+59340486 None:intergenic
TCAGAAACTCTAGCCGACTC+AGG 0.569094 4_1:+59341801 None:intergenic
ATTGAAGGGTTTCATCAAAG+AGG 0.569391 4_1:-59343765 Msa0560090:CDS
AGCAATTGATTCATATCTCA+AGG 0.570287 4_1:-59341763 Msa0560090:intron
GCACTAGCTGATTTCTACTC+GGG 0.573185 4_1:+59342649 None:intergenic
AAAGTGAAACAGCAGCTGGA+AGG 0.573228 4_1:-59343833 Msa0560090:CDS
TGATATATGGAAAACATGAA+AGG 0.576443 4_1:+59346243 None:intergenic
AGCAGCTGGAAGGGAATATG+GGG 0.577271 4_1:-59343823 Msa0560090:CDS
ACTTACTAAAATGACAAATG+TGG 0.586018 4_1:-59340621 Msa0560090:CDS
AAGACAAAACAACATAGCTA+AGG 0.587005 4_1:+59342868 None:intergenic
CATCCTTCTTGGAAAGATTG+CGG 0.587019 4_1:+59340812 None:intergenic
ACACATCAGCTTGGACTAGT+GGG 0.588970 4_1:-59340661 Msa0560090:CDS
GATGCAGCGAGTCTATAGCT+TGG 0.589137 4_1:-59342767 Msa0560090:CDS
ACAGGAAAACACTTCTAGAA+GGG 0.589157 4_1:-59340838 Msa0560090:CDS
AATGTAAAGAGATGAAAAGG+TGG 0.595107 4_1:+59346199 None:intergenic
TAAATGGCTACCAGGACTGG+CGG 0.596021 4_1:-59342499 Msa0560090:CDS
GTGTAGATGAAGAATTAATG+AGG 0.597404 4_1:+59346265 None:intergenic
GTTCTCACCTCAACCAAACA+TGG 0.597650 4_1:-59343795 Msa0560090:CDS
CTATGGATGATCTCCCTGGA+GGG 0.599558 4_1:-59343043 Msa0560090:CDS
TTTCCACTTCTAGATAGCAA+AGG 0.603021 4_1:+59343116 None:intergenic
AATGGCTACCAGGACTGGCG+GGG 0.608558 4_1:-59342497 Msa0560090:CDS
GCTGATGGGGCTGGAAGTGA+AGG 0.609300 4_1:-59346171 Msa0560090:intron
CAAATGCTTCAGGCCCTCCA+GGG 0.613888 4_1:+59343030 None:intergenic
ACACCGCAATCTTTCCAAGA+AGG 0.615108 4_1:-59340815 Msa0560090:CDS
AAGAAAATTATTATTAGACT+CGG 0.615213 4_1:+59340328 None:intergenic
GGGAACGACACTACAATCCA+AGG 0.616043 4_1:-59342477 Msa0560090:CDS
GACAACAGTAGCTGGAGAGG+TGG 0.618765 4_1:-59342411 Msa0560090:CDS
AGCCAGCTTCCACTTGCACA+AGG 0.623189 4_1:-59343550 Msa0560090:intron
TTCATCAAAGAGGAAACTCA+TGG 0.623821 4_1:-59343755 Msa0560090:intron
ATGCCAAGGCAAGAGTGGCA+AGG 0.625949 4_1:-59341905 Msa0560090:CDS
TCTGATCACAAGCATGTGGG+AGG 0.626741 4_1:-59341936 Msa0560090:CDS
CTAATCCAAAAGGAATAAGG+TGG 0.630264 4_1:-59342734 Msa0560090:CDS
TAGCTATCTTATTCAAGTCG+GGG 0.642768 4_1:+59343063 None:intergenic
ACAGAAAGACAACTAGAAGG+TGG 0.644997 4_1:-59340562 Msa0560090:CDS
TGAATCTCAGTACCAACCAA+TGG 0.650255 4_1:-59340867 Msa0560090:CDS
AACTTCAAGTCTTCAAACCA+AGG 0.650442 4_1:-59342355 Msa0560090:CDS
GGTGACAACAGTAGCTGGAG+AGG 0.651185 4_1:-59342414 Msa0560090:CDS
TATGCAACTAAATGGCTACC+AGG 0.651310 4_1:-59342507 Msa0560090:CDS
AAGTGAAACTATGTATGATG+TGG 0.652037 4_1:-59342036 Msa0560090:CDS
CGACACTACAATCCAAGGAG+AGG 0.656624 4_1:-59342472 Msa0560090:CDS
TCGGCTAGAGTTTCTGACGA+TGG 0.658303 4_1:-59341795 Msa0560090:CDS
GGGAGGTAACCTGAATGCCA+AGG 0.660203 4_1:-59341919 Msa0560090:CDS
TGTGGACAGTTATCTTACAG+AGG 0.662209 4_1:-59341880 Msa0560090:CDS
GAGACACTGTCTTTCTGCGG+CGG 0.666070 4_1:+59342294 None:intergenic
CATCAGCTTGGACTAGTGGG+TGG 0.666857 4_1:-59340658 Msa0560090:CDS
TAATCCAAAAGGAATAAGGT+GGG 0.670549 4_1:-59342733 Msa0560090:CDS
TCTTCAAACCACCAATCAGG+AGG 0.670951 4_1:+59342627 None:intergenic
CACGAGACACTGTCTTTCTG+CGG 0.688596 4_1:+59342291 None:intergenic
GCTCTGAAAAGCTGTCACCG+TGG 0.705207 4_1:-59342815 Msa0560090:CDS
TGAGTATCTCGAAATGACTG+AGG 0.706657 4_1:-59342931 Msa0560090:CDS
ATGATGTGGATCTTGTTCAG+AGG 0.708047 4_1:-59342022 Msa0560090:CDS
GCTATGGATGATCTCCCTGG+AGG 0.717645 4_1:-59343044 Msa0560090:CDS
GCAGCTGGAAGGGAATATGG+GGG 0.752997 4_1:-59343822 Msa0560090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTATCTATCATAATTT+CGG + chr4_1:59340341-59340360 None:intergenic 10.0%
!!! ATTTACTTATAATTTTGATA+TGG - chr4_1:59341211-59341230 Msa0560090:intron 10.0%
!!! TTTACTTATAATTTTGATAT+GGG - chr4_1:59341212-59341231 Msa0560090:intron 10.0%
!! AATTAAAACATATATTTGAA+TGG + chr4_1:59342236-59342255 None:intergenic 10.0%
!!! ATTTCTTTCTTTTATATTTT+TGG + chr4_1:59342679-59342698 None:intergenic 10.0%
!! AAAAAATAAAATAACTTTCT+AGG + chr4_1:59343352-59343371 None:intergenic 10.0%
!! ACAATTTACTTATTGATATA+TGG + chr4_1:59340609-59340628 None:intergenic 15.0%
!!! AATATTTTGAACTTCAAAAA+TGG + chr4_1:59340711-59340730 None:intergenic 15.0%
!!! CTTTATATTCAGATTTTTAA+CGG + chr4_1:59340813-59340832 None:intergenic 15.0%
!!! GGAAAAATATGATTTTTATA+TGG - chr4_1:59341158-59341177 Msa0560090:intron 15.0%
!!! TTACTTATAATTTTGATATG+GGG - chr4_1:59341213-59341232 Msa0560090:intron 15.0%
!! CATCATTTAACAAAAAAATT+AGG + chr4_1:59341297-59341316 None:intergenic 15.0%
!!! ATATATGTTTTAATTAGAAC+TGG - chr4_1:59342241-59342260 Msa0560090:intron 15.0%
!!! TATATGTTTTAATTAGAACT+GGG - chr4_1:59342242-59342261 Msa0560090:intron 15.0%
!! TATAAAAGTCTCATAAAAAA+GGG + chr4_1:59342440-59342459 None:intergenic 15.0%
!! TTATAAAAGTCTCATAAAAA+AGG + chr4_1:59342441-59342460 None:intergenic 15.0%
!! TTCAATTAACTTACATAAAA+TGG + chr4_1:59343195-59343214 None:intergenic 15.0%
!!! GTTATTTTATTTTTTCTCTA+AGG - chr4_1:59343357-59343376 Msa0560090:intron 15.0%
!!! TTTTTATTTTCAATTACTCT+AGG - chr4_1:59345151-59345170 Msa0560090:intron 15.0%
!! ATATGACAATATACTTATTT+AGG - chr4_1:59345308-59345327 Msa0560090:intron 15.0%
!!! TCAAACTTTAATTTGTTTTT+TGG - chr4_1:59346354-59346373 Msa0560090:five_prime_UTR 15.0%
!! AAGAAAATTATTATTAGACT+CGG + chr4_1:59346511-59346530 None:intergenic 15.0%
!!! GATTTTCACAGTAATAATTA+AGG + chr4_1:59340402-59340421 None:intergenic 20.0%
!!! ATCTGAGATATACAAATATA+TGG + chr4_1:59340426-59340445 None:intergenic 20.0%
!!! ATTTGAGCTTTTGTATATAA+AGG - chr4_1:59340543-59340562 Msa0560090:exon 20.0%
!! AATTATGAAACACAACAATA+AGG + chr4_1:59340767-59340786 None:intergenic 20.0%
!!! ATACTTTTAGCAAGAAATAA+AGG + chr4_1:59340888-59340907 None:intergenic 20.0%
!! AAATTATTTGTTTAGACTCT+AGG + chr4_1:59340973-59340992 None:intergenic 20.0%
!! TAATTGAGTTTACAAAGTTA+TGG - chr4_1:59341137-59341156 Msa0560090:intron 20.0%
!! AATCTATTATGACAAAAATC+TGG + chr4_1:59341393-59341412 None:intergenic 20.0%
!! TATTGAATGCATGATATAAT+TGG + chr4_1:59342278-59342297 None:intergenic 20.0%
!!! AGCATTGAATATATTAAGAA+GGG + chr4_1:59342402-59342421 None:intergenic 20.0%
!!! TAGCATTGAATATATTAAGA+AGG + chr4_1:59342403-59342422 None:intergenic 20.0%
!! ATAATCTTGTAGTAAAGTAT+TGG - chr4_1:59342499-59342518 Msa0560090:CDS 20.0%
!!! TAGTTTTTTTCTTAACCTTT+CGG + chr4_1:59343624-59343643 None:intergenic 20.0%
!! AATTAGTTAGACATTGTTTA+AGG + chr4_1:59344657-59344676 None:intergenic 20.0%
!! CTAATATTTCAAGATAACAT+TGG - chr4_1:59345372-59345391 Msa0560090:five_prime_UTR 20.0%
!! AAAACAAATTAAAGTTTGAG+AGG + chr4_1:59346353-59346372 None:intergenic 20.0%
! TCTATCATAATTTCGGTAAT+CGG + chr4_1:59340334-59340353 None:intergenic 25.0%
! TGATATATGGAAAACATGAA+AGG + chr4_1:59340596-59340615 None:intergenic 25.0%
! CAAAATGTAAAGAGATGAAA+AGG + chr4_1:59340643-59340662 None:intergenic 25.0%
!! AAAGGCATAGTATAATTTCA+TGG + chr4_1:59340870-59340889 None:intergenic 25.0%
! GACACATACATAAATTAGAA+TGG - chr4_1:59340930-59340949 Msa0560090:CDS 25.0%
! TGTTTAGATGACATTGTTTA+AGG + chr4_1:59341006-59341025 None:intergenic 25.0%
! TCTACTCTTAGTTAAAATGT+TGG - chr4_1:59341265-59341284 Msa0560090:intron 25.0%
!! AAAATCTGGATTTTCAGTTT+TGG + chr4_1:59341379-59341398 None:intergenic 25.0%
! TGTCATAATAGATTGTTTGA+AGG - chr4_1:59341399-59341418 Msa0560090:intron 25.0%
!! TTGATGATTATATGTTGTGT+TGG - chr4_1:59341568-59341587 Msa0560090:intron 25.0%
! GTGCTAGAATTAAATTTCAA+TGG - chr4_1:59341672-59341691 Msa0560090:intron 25.0%
!!! GATTTTTTTGAAGTAAGAAG+TGG - chr4_1:59341702-59341721 Msa0560090:intron 25.0%
!! TATGTTTTCTCCAAATTGAT+TGG - chr4_1:59341851-59341870 Msa0560090:CDS 25.0%
! AACTATGTTTCCAATCAATT+TGG + chr4_1:59341864-59341883 None:intergenic 25.0%
!! TGAAGCAAACTACATTATTT+TGG - chr4_1:59341933-59341952 Msa0560090:CDS 25.0%
!! GAAGCAAACTACATTATTTT+GGG - chr4_1:59341934-59341953 Msa0560090:CDS 25.0%
! TTATATCATGCATTCAATAC+AGG - chr4_1:59342279-59342298 Msa0560090:intron 25.0%
!! TTTTCATCAGAAGATAGATA+TGG - chr4_1:59342334-59342353 Msa0560090:CDS 25.0%
!! GATTTCCTTTTAATGCTATT+TGG - chr4_1:59342772-59342791 Msa0560090:CDS 25.0%
! TTTCTCCAAATAGCATTAAA+AGG + chr4_1:59342780-59342799 None:intergenic 25.0%
! AAAGAAAGAAAGTGACAATT+TGG - chr4_1:59342801-59342820 Msa0560090:CDS 25.0%
! CAAAATGATATCTTTGTTGA+TGG + chr4_1:59342881-59342900 None:intergenic 25.0%
! CTTTCGGTTTATAGATTATA+AGG + chr4_1:59343608-59343627 None:intergenic 25.0%
! CTTATAATCTATAAACCGAA+AGG - chr4_1:59343606-59343625 Msa0560090:intron 25.0%
! ATTACTGCTATTAAGGTAAA+AGG - chr4_1:59344269-59344288 Msa0560090:intron 25.0%
! TAATGCATTATGCAACTAAA+TGG - chr4_1:59344321-59344340 Msa0560090:intron 25.0%
!!! AGTAATAGTAGTTTTAGTAG+CGG - chr4_1:59344401-59344420 Msa0560090:intron 25.0%
! AATATCAAACTATCTCTAAC+AGG - chr4_1:59344683-59344702 Msa0560090:intron 25.0%
!!! TGATTACTGATTTAGAGAAA+AGG - chr4_1:59344718-59344737 Msa0560090:intron 25.0%
!!! GATTACTGATTTAGAGAAAA+GGG - chr4_1:59344719-59344738 Msa0560090:intron 25.0%
!!! GGTAATTAATCACTTTTCAA+AGG - chr4_1:59345094-59345113 Msa0560090:intron 25.0%
!!! AATCACTTTTCAAAGGATAA+AGG - chr4_1:59345101-59345120 Msa0560090:intron 25.0%
!!! ATCACTTTTCAAAGGATAAA+GGG - chr4_1:59345102-59345121 Msa0560090:intron 25.0%
! TCTTAAAAGCAAAGTTGTAT+TGG - chr4_1:59345239-59345258 Msa0560090:intron 25.0%
! ATATTTCAAGATAACATTGG+AGG - chr4_1:59345375-59345394 Msa0560090:five_prime_UTR 25.0%
! AAAGATATAATTGCGATGAA+GGG + chr4_1:59345415-59345434 None:intergenic 25.0%
! TAAAGATATAATTGCGATGA+AGG + chr4_1:59345416-59345435 None:intergenic 25.0%
! CTCATTGAAAATGAAATTTG+AGG + chr4_1:59345456-59345475 None:intergenic 25.0%
! ACATAAGACATCAATGAAAT+TGG + chr4_1:59345646-59345665 None:intergenic 25.0%
! GAGTGTGAAAACAAAATATT+TGG - chr4_1:59346092-59346111 Msa0560090:intron 25.0%
! ACTTACTAAAATGACAAATG+TGG - chr4_1:59346215-59346234 Msa0560090:five_prime_UTR 25.0%
! AAATGTGGAAAATCATGATA+TGG - chr4_1:59346230-59346249 Msa0560090:five_prime_UTR 25.0%
!! TGGACTTTTTGTTCTTTTTT+TGG - chr4_1:59346374-59346393 Msa0560090:five_prime_UTR 25.0%
!! TTTCATTCCTTTTCTACTTT+TGG - chr4_1:59346402-59346421 Msa0560090:five_prime_UTR 25.0%
CTATCATAATTTCGGTAATC+GGG + chr4_1:59340333-59340352 None:intergenic 30.0%
!!! TAAAGGAGTTTTTGAAGTGT+TGG + chr4_1:59340461-59340480 None:intergenic 30.0%
TTGTGAGAAACAAGAGATAA+AGG + chr4_1:59340478-59340497 None:intergenic 30.0%
GTGTAGATGAAGAATTAATG+AGG + chr4_1:59340574-59340593 None:intergenic 30.0%
AATGTAAAGAGATGAAAAGG+TGG + chr4_1:59340640-59340659 None:intergenic 30.0%
! TCTTTACATTTTGTTGCTGA+TGG - chr4_1:59340650-59340669 Msa0560090:CDS 30.0%
! CTTTACATTTTGTTGCTGAT+GGG - chr4_1:59340651-59340670 Msa0560090:CDS 30.0%
! TTTACATTTTGTTGCTGATG+GGG - chr4_1:59340652-59340671 Msa0560090:CDS 30.0%
TTACATAATGCATGTGTGTT+AGG + chr4_1:59340844-59340863 None:intergenic 30.0%
GAGAAGTTCAATAAAAACCT+TGG + chr4_1:59341074-59341093 None:intergenic 30.0%
ATAGATTGTTTGAAGGAGAA+AGG - chr4_1:59341406-59341425 Msa0560090:intron 30.0%
AAAGCCTATCAAAGCATAAA+AGG - chr4_1:59341460-59341479 Msa0560090:intron 30.0%
TTTCAGAAGGTAAAACTTGA+GGG - chr4_1:59341487-59341506 Msa0560090:intron 30.0%
! CTTGCTTGATGATTATAGAT+TGG - chr4_1:59341593-59341612 Msa0560090:intron 30.0%
GAGACTTATGATAAAGAAGT+TGG - chr4_1:59341746-59341765 Msa0560090:intron 30.0%
AAGTTGCAAATATGTTCTGT+AGG - chr4_1:59342188-59342207 Msa0560090:intron 30.0%
CATGATATAATTGGTACATG+GGG + chr4_1:59342269-59342288 None:intergenic 30.0%
GCATGATATAATTGGTACAT+GGG + chr4_1:59342270-59342289 None:intergenic 30.0%
TGCATGATATAATTGGTACA+TGG + chr4_1:59342271-59342290 None:intergenic 30.0%
ATTAAGAAGGGCAAACAAAA+AGG + chr4_1:59342390-59342409 None:intergenic 30.0%
TTAAGTGAGAGTGAGTATAA+AGG + chr4_1:59342911-59342930 None:intergenic 30.0%
ACAGTAATGTGTTGTATGTT+AGG + chr4_1:59342949-59342968 None:intergenic 30.0%
!!! TTGGTTTGTTTTTCAGTATG+TGG - chr4_1:59342973-59342992 Msa0560090:CDS 30.0%
!!! TGGTTTGTTTTTCAGTATGT+GGG - chr4_1:59342974-59342993 Msa0560090:CDS 30.0%
TTCAATCTTAACACCATGTT+TGG + chr4_1:59343057-59343076 None:intergenic 30.0%
! AAACATGGTGTTAAGATTGA+AGG - chr4_1:59343056-59343075 Msa0560090:CDS 30.0%
! AACATGGTGTTAAGATTGAA+GGG - chr4_1:59343057-59343076 Msa0560090:CDS 30.0%
AAACTCATTAACAACTTGAG+CGG + chr4_1:59343421-59343440 None:intergenic 30.0%
TAATGAGTTTCAGTGATGTT+TGG - chr4_1:59343431-59343450 Msa0560090:intron 30.0%
ACCAAACATACACTCAATTA+AGG - chr4_1:59343499-59343518 Msa0560090:intron 30.0%
TCCTTAATTGAGTGTATGTT+TGG + chr4_1:59343503-59343522 None:intergenic 30.0%
TCAATTAAGGACGATTCATT+TGG - chr4_1:59343512-59343531 Msa0560090:intron 30.0%
CAATTAAGGACGATTCATTT+GGG - chr4_1:59343513-59343532 Msa0560090:intron 30.0%
GTTTATAGATTATAAGGACC+TGG + chr4_1:59343602-59343621 None:intergenic 30.0%
AGGATACTTTCACAACAAAA+AGG + chr4_1:59343703-59343722 None:intergenic 30.0%
ATAGCTATCTTATTCAAGTC+GGG + chr4_1:59343777-59343796 None:intergenic 30.0%
CATAGCTATCTTATTCAAGT+CGG + chr4_1:59343778-59343797 None:intergenic 30.0%
AAGACAAAACAACATAGCTA+AGG + chr4_1:59343971-59343990 None:intergenic 30.0%
TAATCCAAAAGGAATAAGGT+GGG - chr4_1:59344103-59344122 Msa0560090:intron 30.0%
! CTTTCATTTCGTTCCATTTT+GGG + chr4_1:59344160-59344179 None:intergenic 30.0%
! TCTTTCATTTCGTTCCATTT+TGG + chr4_1:59344161-59344180 None:intergenic 30.0%
TTGAAGATGTTTCAATCCTT+AGG - chr4_1:59344225-59344244 Msa0560090:intron 30.0%
TAACAAAGTGATCAATCCTA+AGG + chr4_1:59344244-59344263 None:intergenic 30.0%
TAGAGTCATTACTGCTATTA+AGG - chr4_1:59344262-59344281 Msa0560090:intron 30.0%
! AATAACCATCTTTTGATCCT+TGG + chr4_1:59344501-59344520 None:intergenic 30.0%
AGGTAGTTACAAGTTAGTTA+TGG + chr4_1:59344637-59344656 None:intergenic 30.0%
AAGTGAAACTATGTATGATG+TGG - chr4_1:59344800-59344819 Msa0560090:intron 30.0%
! AGCAATTGATTCATATCTCA+AGG - chr4_1:59345073-59345092 Msa0560090:intron 30.0%
!! TCACTTTTCAAAGGATAAAG+GGG - chr4_1:59345103-59345122 Msa0560090:intron 30.0%
GTAAAATTTGAGTCAGAACT+TGG - chr4_1:59345189-59345208 Msa0560090:intron 30.0%
!!! AAGCAAAGTTGTATTGGTTT+TGG - chr4_1:59345245-59345264 Msa0560090:intron 30.0%
!! CTCATTTTAGAAGAATGAGT+CGG - chr4_1:59345667-59345686 Msa0560090:intron 30.0%
AGATTCACATGATATGATCA+TGG - chr4_1:59345707-59345726 Msa0560090:intron 30.0%
GATCTGTGAAACAAATTAAC+AGG - chr4_1:59345753-59345772 Msa0560090:intron 30.0%
!! ATTTTTAGAGAGAAGTGCAG+AGG + chr4_1:59340369-59340388 None:intergenic 35.0%
GGTCAAACTCAACAATTCAA+AGG + chr4_1:59340792-59340811 None:intergenic 35.0%
TCCATTAGAATGACCTATGT+AGG - chr4_1:59341039-59341058 Msa0560090:CDS 35.0%
TTTGAAGGAGAAAGGCAAAA+GGG - chr4_1:59341414-59341433 Msa0560090:intron 35.0%
! CAAAAGGGTAGCAAAAGTAT+TGG - chr4_1:59341429-59341448 Msa0560090:intron 35.0%
GTTTCAGAAGGTAAAACTTG+AGG - chr4_1:59341486-59341505 Msa0560090:intron 35.0%
ATAGATTGGATGTGTTGTGT+TGG - chr4_1:59341607-59341626 Msa0560090:intron 35.0%
!!! TGGTTTTGATGATGAACCTA+TGG - chr4_1:59341722-59341741 Msa0560090:intron 35.0%
!!! GGTTTTGATGATGAACCTAT+GGG - chr4_1:59341723-59341742 Msa0560090:intron 35.0%
!!! GTTTTGATGATGAACCTATG+GGG - chr4_1:59341724-59341743 Msa0560090:intron 35.0%
TTTATCATAAGTCTCCCCAT+AGG + chr4_1:59341741-59341760 None:intergenic 35.0%
GATGAGATGTTGACAACTTA+TGG - chr4_1:59342092-59342111 Msa0560090:intron 35.0%
TGAATGGTATCTAGAGAGAA+AGG + chr4_1:59342220-59342239 None:intergenic 35.0%
AATACAGGTAGACCACAAAA+TGG - chr4_1:59342294-59342313 Msa0560090:intron 35.0%
ATACAGGTAGACCACAAAAT+GGG - chr4_1:59342295-59342314 Msa0560090:intron 35.0%
! CTACAATACAACCCATTTTG+TGG + chr4_1:59342309-59342328 None:intergenic 35.0%
GCAAACAAAAAGGTAGATGT+AGG + chr4_1:59342380-59342399 None:intergenic 35.0%
!! ACATTCCTTTTGATGACCAA+AGG + chr4_1:59342532-59342551 None:intergenic 35.0%
CTGAAAAGAAGAGACATGTA+TGG - chr4_1:59342613-59342632 Msa0560090:CDS 35.0%
TCTCACAAGTTGTGTCAAAA+TGG + chr4_1:59342748-59342767 None:intergenic 35.0%
ATTTGGAGATAAGTCCAAAG+AGG - chr4_1:59342818-59342837 Msa0560090:CDS 35.0%
ACAACACATTACTGTGAGTT+TGG - chr4_1:59342954-59342973 Msa0560090:CDS 35.0%
ATTGAAGGGTTTCATCAAAG+AGG - chr4_1:59343071-59343090 Msa0560090:CDS 35.0%
TTCATCAAAGAGGAAACTCA+TGG - chr4_1:59343081-59343100 Msa0560090:CDS 35.0%
ATTTGGACTTGAAGATCACT+TGG + chr4_1:59343260-59343279 None:intergenic 35.0%
AGTGATCTTCAAGTCCAAAT+TGG - chr4_1:59343260-59343279 Msa0560090:intron 35.0%
GAACAACTTGGTTTATAGGT+TGG + chr4_1:59343399-59343418 None:intergenic 35.0%
AGTGATGTTTGGTATCAAGT+TGG - chr4_1:59343442-59343461 Msa0560090:intron 35.0%
TGTATGTTTGGTATCATGGT+CGG + chr4_1:59343491-59343510 None:intergenic 35.0%
TGAGTGTATGTTTGGTATCA+TGG + chr4_1:59343495-59343514 None:intergenic 35.0%
! TATCCTTTGCTATCTAGAAG+TGG - chr4_1:59343717-59343736 Msa0560090:intron 35.0%
TTTCCACTTCTAGATAGCAA+AGG + chr4_1:59343723-59343742 None:intergenic 35.0%
TAGCTATCTTATTCAAGTCG+GGG + chr4_1:59343776-59343795 None:intergenic 35.0%
CGACTTGAATAAGATAGCTA+TGG - chr4_1:59343776-59343795 Msa0560090:CDS 35.0%
!!! GCTATGTTGTTTTGTCTTCA+TGG - chr4_1:59343973-59343992 Msa0560090:intron 35.0%
! ATTTGAAGATTTTCTGCCCA+CGG + chr4_1:59344041-59344060 None:intergenic 35.0%
AAAGCTTGTGCTAATCCAAA+AGG - chr4_1:59344092-59344111 Msa0560090:intron 35.0%
GTGCTAATCCAAAAGGAATA+AGG - chr4_1:59344099-59344118 Msa0560090:intron 35.0%
CTAATCCAAAAGGAATAAGG+TGG - chr4_1:59344102-59344121 Msa0560090:intron 35.0%
GGTATGAGATTTGAACTGAT+TGG - chr4_1:59344290-59344309 Msa0560090:intron 35.0%
GGACTTCATATGATTGTTTC+TGG - chr4_1:59344446-59344465 Msa0560090:intron 35.0%
AACTTCAAGTCTTCAAACCA+AGG - chr4_1:59344481-59344500 Msa0560090:intron 35.0%
TCAAACCAAGGATCAAAAGA+TGG - chr4_1:59344493-59344512 Msa0560090:intron 35.0%
GAGAATGGCAAACATGTTAA+AGG - chr4_1:59344589-59344608 Msa0560090:intron 35.0%
ATGGCAAACATGTTAAAGGT+AGG - chr4_1:59344593-59344612 Msa0560090:intron 35.0%
! ACTGATTTAGAGAAAAGGGT+TGG - chr4_1:59344723-59344742 Msa0560090:intron 35.0%
!! GTTTCACTTTTCTCAAAGCA+AGG + chr4_1:59344789-59344808 None:intergenic 35.0%
CTTGTTCAAGAACAAACTGA+AGG - chr4_1:59344852-59344871 Msa0560090:intron 35.0%
TCAGAAAAGGATTGTCTACT+TGG + chr4_1:59344885-59344904 None:intergenic 35.0%
! TTTTCTGATCACAAGCATGT+GGG - chr4_1:59344897-59344916 Msa0560090:intron 35.0%
TATACTAGAAGCTGCATTCA+CGG + chr4_1:59345518-59345537 None:intergenic 35.0%
ATGCAGCTTCTAGTATATAG+TGG - chr4_1:59345521-59345540 Msa0560090:intron 35.0%
GCTTCTAGTATATAGTGGTA+TGG - chr4_1:59345526-59345545 Msa0560090:intron 35.0%
AAAATGAACGACTGCCATTA+AGG - chr4_1:59345869-59345888 Msa0560090:intron 35.0%
AAATGAACGACTGCCATTAA+GGG - chr4_1:59345870-59345889 Msa0560090:intron 35.0%
!! GTTTTCCTGTTTGTTACCAT+TGG + chr4_1:59345988-59346007 None:intergenic 35.0%
AACAGGAAAACACTTCTAGA+AGG - chr4_1:59345997-59346016 Msa0560090:intron 35.0%
! ACAGGAAAACACTTCTAGAA+GGG - chr4_1:59345998-59346017 Msa0560090:intron 35.0%
! TTTGGAGCTTCAACATGATA+TGG - chr4_1:59346110-59346129 Msa0560090:intron 35.0%
! CTTCTAGTTGTCTTTCTGTT+CGG + chr4_1:59346273-59346292 None:intergenic 35.0%
!! TTTGAGAGGTATCAGTTCTT+AGG + chr4_1:59346339-59346358 None:intergenic 35.0%
ATGCTGTCCAAAAGTAGAAA+AGG + chr4_1:59346412-59346431 None:intergenic 35.0%
CTCAAATGAGCTGAAGAAGA+AGG + chr4_1:59340530-59340549 None:intergenic 40.0%
GCCTACATAGGTCATTCTAA+TGG + chr4_1:59341043-59341062 None:intergenic 40.0%
GTTTGAAGGAGAAAGGCAAA+AGG - chr4_1:59341413-59341432 Msa0560090:intron 40.0%
ATAGATGCTCACCATTTGTG+TGG + chr4_1:59342135-59342154 None:intergenic 40.0%
!! AAGTATTGGAGATGTGCCTT+TGG - chr4_1:59342513-59342532 Msa0560090:CDS 40.0%
ATGTGCCTTTGGTCATCAAA+AGG - chr4_1:59342524-59342543 Msa0560090:CDS 40.0%
CTTAACACCATGTTTGGTTG+AGG + chr4_1:59343051-59343070 None:intergenic 40.0%
! ATTTCCTCTCTTTTGCATGC+AGG - chr4_1:59343216-59343235 Msa0560090:intron 40.0%
GAAAAGATACCTTGTGCAAG+TGG + chr4_1:59343298-59343317 None:intergenic 40.0%
AGCGGAACAACTTGGTTTAT+AGG + chr4_1:59343403-59343422 None:intergenic 40.0%
!! TGGTCGGTTTGTTAGAATCA+CGG + chr4_1:59343475-59343494 None:intergenic 40.0%
ATTATAAGGACCTGGCAATC+CGG + chr4_1:59343594-59343613 None:intergenic 40.0%
AGCAACTCCATAGCAGAATT+TGG + chr4_1:59343841-59343860 None:intergenic 40.0%
TTGACAGCAAGCAACATTTC+CGG - chr4_1:59343867-59343886 Msa0560090:intron 40.0%
TGAGTATCTCGAAATGACTG+AGG - chr4_1:59343905-59343924 Msa0560090:intron 40.0%
ATGACTGAGGATCTAGAAGA+AGG - chr4_1:59343918-59343937 Msa0560090:intron 40.0%
ACATCTTCAAACCACCAATC+AGG + chr4_1:59344215-59344234 None:intergenic 40.0%
TATGCAACTAAATGGCTACC+AGG - chr4_1:59344329-59344348 Msa0560090:intron 40.0%
AAGGTAGGCTGTGTTAGATA+TGG - chr4_1:59344608-59344627 Msa0560090:intron 40.0%
ATGATGTGGATCTTGTTCAG+AGG - chr4_1:59344814-59344833 Msa0560090:intron 40.0%
CACATGCTTGTGATCAGAAA+AGG + chr4_1:59344898-59344917 None:intergenic 40.0%
! CTTTTCTGATCACAAGCATG+TGG - chr4_1:59344896-59344915 Msa0560090:intron 40.0%
TGTGGACAGTTATCTTACAG+AGG - chr4_1:59344956-59344975 Msa0560090:intron 40.0%
CCTGAAACTTTGTCGATGAA+AGG + chr4_1:59344998-59345017 None:intergenic 40.0%
CCTTTCATCGACAAAGTTTC+AGG - chr4_1:59344995-59345014 Msa0560090:intron 40.0%
CTTTCATGCTCAGTTAGTGT+TGG + chr4_1:59345784-59345803 None:intergenic 40.0%
CAACACTAACTGAGCATGAA+AGG - chr4_1:59345782-59345801 Msa0560090:intron 40.0%
ACTTGCACTACTACCCTTAA+TGG + chr4_1:59345886-59345905 None:intergenic 40.0%
TGAATCTCAGTACCAACCAA+TGG - chr4_1:59345969-59345988 Msa0560090:intron 40.0%
ACCAACCAATGGTAACAAAC+AGG - chr4_1:59345980-59345999 Msa0560090:intron 40.0%
! TCCTGTTTGTTACCATTGGT+TGG + chr4_1:59345984-59346003 None:intergenic 40.0%
CATCCTTCTTGGAAAGATTG+CGG + chr4_1:59346027-59346046 None:intergenic 40.0%
CTGTTCGGTTCTTCAGAAAT+TGG + chr4_1:59346258-59346277 None:intergenic 40.0%
CGAACAGAAAGACAACTAGA+AGG - chr4_1:59346271-59346290 Msa0560090:five_prime_UTR 40.0%
ACAGAAAGACAACTAGAAGG+TGG - chr4_1:59346274-59346293 Msa0560090:five_prime_UTR 40.0%
!! TTGGTCTTGCAAGCCTACAT+AGG + chr4_1:59341055-59341074 None:intergenic 45.0%
TATGTAGGCTTGCAAGACCA+AGG - chr4_1:59341054-59341073 Msa0560090:CDS 45.0%
! CGCGCCTTTTATGCTTTGAT+AGG + chr4_1:59341467-59341486 None:intergenic 45.0%
! CATAAAAGGCGCGTTTCAGA+AGG - chr4_1:59341474-59341493 Msa0560090:intron 45.0%
TTGAGGGTTTGACGATCTCA+TGG - chr4_1:59341503-59341522 Msa0560090:intron 45.0%
TGAGGGTTTGACGATCTCAT+GGG - chr4_1:59341504-59341523 Msa0560090:intron 45.0%
GCATGTGATCTCCACACAAA+TGG - chr4_1:59342121-59342140 Msa0560090:intron 45.0%
TTGCAACTTCACCATCTCTG+TGG + chr4_1:59342177-59342196 None:intergenic 45.0%
GGTATCTAGAGAGAAAGGCT+TGG + chr4_1:59342215-59342234 None:intergenic 45.0%
ACACTAGGTGTTTGCCTCTT+TGG + chr4_1:59342835-59342854 None:intergenic 45.0%
AAAGAGGCAAACACCTAGTG+TGG - chr4_1:59342834-59342853 Msa0560090:CDS 45.0%
AAGAGGCAAACACCTAGTGT+GGG - chr4_1:59342835-59342854 Msa0560090:CDS 45.0%
!! GATGGAGATGAGTACTGAGT+AGG + chr4_1:59342863-59342882 None:intergenic 45.0%
TCAGAAAGTGAAACAGCAGC+TGG - chr4_1:59342999-59343018 Msa0560090:CDS 45.0%
AAAGTGAAACAGCAGCTGGA+AGG - chr4_1:59343003-59343022 Msa0560090:CDS 45.0%
AAGTGAAACAGCAGCTGGAA+GGG - chr4_1:59343004-59343023 Msa0560090:CDS 45.0%
GTTCTCACCTCAACCAAACA+TGG - chr4_1:59343041-59343060 Msa0560090:CDS 45.0%
CATACCTGCATGCAAAAGAG+AGG + chr4_1:59343223-59343242 None:intergenic 45.0%
ACAACTTGAGCGGAACAACT+TGG + chr4_1:59343411-59343430 None:intergenic 45.0%
!! CGGTTTGTTAGAATCACGGT+GGG + chr4_1:59343471-59343490 None:intergenic 45.0%
!! TCGGTTTGTTAGAATCACGG+TGG + chr4_1:59343472-59343491 None:intergenic 45.0%
AGACTTTACTTGTCTCCTGG+CGG - chr4_1:59343564-59343583 Msa0560090:CDS 45.0%
ATAGCTATGGATGATCTCCC+TGG - chr4_1:59343789-59343808 Msa0560090:CDS 45.0%
GCTGCAAGTTCAAATGCTTC+AGG + chr4_1:59343819-59343838 None:intergenic 45.0%
CTTGCAGCCAAATTCTGCTA+TGG - chr4_1:59343831-59343850 Msa0560090:CDS 45.0%
GATACTCAGCAGCACATCTT+AGG + chr4_1:59343893-59343912 None:intergenic 45.0%
CTATAGACTCGCTGCATCTT+CGG + chr4_1:59344067-59344086 None:intergenic 45.0%
! TACGCCCACCTTATTCCTTT+TGG + chr4_1:59344110-59344129 None:intergenic 45.0%
CGAAAGCTTCAAGCCCAAAA+TGG - chr4_1:59344144-59344163 Msa0560090:intron 45.0%
! GCACTAGCTGATTTCTACTC+GGG + chr4_1:59344190-59344209 None:intergenic 45.0%
! GGCACTAGCTGATTTCTACT+CGG + chr4_1:59344191-59344210 None:intergenic 45.0%
TCTTCAAACCACCAATCAGG+AGG + chr4_1:59344212-59344231 None:intergenic 45.0%
AACTAAATGGCTACCAGGAC+TGG - chr4_1:59344334-59344353 Msa0560090:intron 45.0%
! TGTTGCTTGTTTCCTCTCCT+TGG + chr4_1:59344379-59344398 None:intergenic 45.0%
GGATCTTGTTCAGAGGTTGT+TGG - chr4_1:59344821-59344840 Msa0560090:intron 45.0%
TGCAGAAGCTTTACCTGAGT+CGG - chr4_1:59345022-59345041 Msa0560090:intron 45.0%
CTAGCCAACAGCTCTCTAAA+AGG - chr4_1:59345940-59345959 Msa0560090:intron 45.0%
ACACCGCAATCTTTCCAAGA+AGG - chr4_1:59346021-59346040 Msa0560090:intron 45.0%
CGCAATCTTTCCAAGAAGGA+TGG - chr4_1:59346025-59346044 Msa0560090:intron 45.0%
TAGCTGTTGTCCATCCTTCT+TGG + chr4_1:59346038-59346057 None:intergenic 45.0%
! AGCAAAAGCACACATCAGCT+TGG - chr4_1:59346166-59346185 Msa0560090:intron 45.0%
!! ACACATCAGCTTGGACTAGT+GGG - chr4_1:59346175-59346194 Msa0560090:five_prime_UTR 45.0%
! CATTTTGTTGCTGATGGGGC+TGG - chr4_1:59340656-59340675 Msa0560090:CDS 50.0%
GGTTTGACGATCTCATGGGT+TGG - chr4_1:59341508-59341527 Msa0560090:intron 50.0%
ACTGAGTAGGAACCCACACT+AGG + chr4_1:59342850-59342869 None:intergenic 50.0%
ACAGCAGCTGGAAGGGAATA+TGG - chr4_1:59343011-59343030 Msa0560090:CDS 50.0%
CAGCAGCTGGAAGGGAATAT+GGG - chr4_1:59343012-59343031 Msa0560090:CDS 50.0%
AGCAGCTGGAAGGGAATATG+GGG - chr4_1:59343013-59343032 Msa0560090:CDS 50.0%
! GGAAGCTGGCTTCTCCAATT+TGG + chr4_1:59343277-59343296 None:intergenic 50.0%
TACCTTGTGCAAGTGGAAGC+TGG + chr4_1:59343291-59343310 None:intergenic 50.0%
ACCCAAGTTCGAATCCTGAC+TGG - chr4_1:59343539-59343558 Msa0560090:intron 50.0%
GCCAGTCAGGATTCGAACTT+GGG + chr4_1:59343543-59343562 None:intergenic 50.0%
CAAGTAAAGTCTGGCCAGTC+AGG + chr4_1:59343556-59343575 None:intergenic 50.0%
GCCAGACTTTACTTGTCTCC+TGG - chr4_1:59343561-59343580 Msa0560090:CDS 50.0%
GCCAGGAGACAAGTAAAGTC+TGG + chr4_1:59343565-59343584 None:intergenic 50.0%
CTATGGATGATCTCCCTGGA+GGG - chr4_1:59343793-59343812 Msa0560090:CDS 50.0%
! CTCTGAAAAGCTGTCACCGT+GGG - chr4_1:59344022-59344041 Msa0560090:intron 50.0%
GATGCAGCGAGTCTATAGCT+TGG - chr4_1:59344069-59344088 Msa0560090:intron 50.0%
GGAATAAGGTGGGCGTATAC+CGG - chr4_1:59344113-59344132 Msa0560090:intron 50.0%
TGAAGCTTTCGTCGCTCTTC+CGG + chr4_1:59344135-59344154 None:intergenic 50.0%
ATCAGCTAGTGCCTCCTGAT+TGG - chr4_1:59344198-59344217 Msa0560090:intron 50.0%
TAAATGGCTACCAGGACTGG+CGG - chr4_1:59344337-59344356 Msa0560090:intron 50.0%
GGGAACGACACTACAATCCA+AGG - chr4_1:59344359-59344378 Msa0560090:intron 50.0%
CGACACTACAATCCAAGGAG+AGG - chr4_1:59344364-59344383 Msa0560090:intron 50.0%
CACGAGACACTGTCTTTCTG+CGG + chr4_1:59344548-59344567 None:intergenic 50.0%
TCTCGTGTAGCTTCCTTCTC+AGG - chr4_1:59344561-59344580 Msa0560090:intron 50.0%
CCATTCTCAGAAGCCTGAGA+AGG + chr4_1:59344577-59344596 None:intergenic 50.0%
! CCTTCTCAGGCTTCTGAGAA+TGG - chr4_1:59344574-59344593 Msa0560090:intron 50.0%
TCTGATCACAAGCATGTGGG+AGG - chr4_1:59344900-59344919 Msa0560090:intron 50.0%
! TCAGAAACTCTAGCCGACTC+AGG + chr4_1:59345038-59345057 None:intergenic 50.0%
TCGGCTAGAGTTTCTGACGA+TGG - chr4_1:59345041-59345060 Msa0560090:intron 50.0%
GCTGCATTCACGGTAGAATC+AGG + chr4_1:59345508-59345527 None:intergenic 50.0%
! GAAGCGTCTCTGTCGTGTAA+TGG - chr4_1:59345804-59345823 Msa0560090:intron 50.0%
! ATTTTGAGCTGCGTGCATGC+AGG + chr4_1:59345854-59345873 None:intergenic 50.0%
!! GCTGCCTTTTAGAGAGCTGT+TGG + chr4_1:59345947-59345966 None:intergenic 50.0%
! CACACATCAGCTTGGACTAG+TGG - chr4_1:59346174-59346193 Msa0560090:five_prime_UTR 50.0%
GCATGCGACTTCCACAGAGA+TGG - chr4_1:59342163-59342182 Msa0560090:intron 55.0%
GCAGCTGGAAGGGAATATGG+GGG - chr4_1:59343014-59343033 Msa0560090:CDS 55.0%
AGCCAGCTTCCACTTGCACA+AGG - chr4_1:59343286-59343305 Msa0560090:intron 55.0%
GGCCAGTCAGGATTCGAACT+TGG + chr4_1:59343544-59343563 None:intergenic 55.0%
CGGGGTCGCGAGAATCATAT+AGG + chr4_1:59343758-59343777 None:intergenic 55.0%
GCTATGGATGATCTCCCTGG+AGG - chr4_1:59343792-59343811 Msa0560090:CDS 55.0%
CAAATGCTTCAGGCCCTCCA+GGG + chr4_1:59343809-59343828 None:intergenic 55.0%
TCAAATGCTTCAGGCCCTCC+AGG + chr4_1:59343810-59343829 None:intergenic 55.0%
CTCAGCAGCACATCTTAGGC+CGG + chr4_1:59343889-59343908 None:intergenic 55.0%
!! GCTCTGAAAAGCTGTCACCG+TGG - chr4_1:59344021-59344040 Msa0560090:intron 55.0%
AGCTAGTGCCTCCTGATTGG+TGG - chr4_1:59344201-59344220 Msa0560090:intron 55.0%
! AAATGGCTACCAGGACTGGC+GGG - chr4_1:59344338-59344357 Msa0560090:intron 55.0%
GTAGCGGTGACAACAGTAGC+TGG - chr4_1:59344417-59344436 Msa0560090:intron 55.0%
GGTGACAACAGTAGCTGGAG+AGG - chr4_1:59344422-59344441 Msa0560090:intron 55.0%
GACAACAGTAGCTGGAGAGG+TGG - chr4_1:59344425-59344444 Msa0560090:intron 55.0%
GAGACACTGTCTTTCTGCGG+CGG + chr4_1:59344545-59344564 None:intergenic 55.0%
GGGAGGTAACCTGAATGCCA+AGG - chr4_1:59344917-59344936 Msa0560090:intron 55.0%
CCACTCTTGCCTTGGCATTC+AGG + chr4_1:59344929-59344948 None:intergenic 55.0%
CCTGAATGCCAAGGCAAGAG+TGG - chr4_1:59344926-59344945 Msa0560090:intron 55.0%
ATGCCAAGGCAAGAGTGGCA+AGG - chr4_1:59344931-59344950 Msa0560090:intron 55.0%
AAGCCTTGCCACTCTTGCCT+TGG + chr4_1:59344937-59344956 None:intergenic 55.0%
!! CATCAGCTTGGACTAGTGGG+TGG - chr4_1:59346178-59346197 Msa0560090:five_prime_UTR 55.0%
GCTGATGGGGCTGGAAGTGA+AGG - chr4_1:59340665-59340684 Msa0560090:CDS 60.0%
GCTGGAAGGGAATATGGGGG+TGG - chr4_1:59343017-59343036 Msa0560090:CDS 60.0%
CTTGTCTCCTGGCGGAACTC+CGG - chr4_1:59343572-59343591 Msa0560090:CDS 60.0%
! AATGGCTACCAGGACTGGCG+GGG - chr4_1:59344339-59344358 Msa0560090:intron 60.0%
GGCAAGAGTGGCAAGGCTTG+TGG - chr4_1:59344938-59344957 Msa0560090:intron 60.0%
TGCGTGCATGCAGGCGTCAA+TGG + chr4_1:59345845-59345864 None:intergenic 60.0%
TGGCAATCCGGAGTTCCGCC+AGG + chr4_1:59343582-59343601 None:intergenic 65.0%
TGGCGGAACTCCGGATTGCC+AGG - chr4_1:59343581-59343600 Msa0560090:CDS 65.0%
! GTGTCGTTCCCCGCCAGTCC+TGG + chr4_1:59344350-59344369 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 59340316 59346542 59340316 ID=Msa0560090;Name=Msa0560090
chr4_1 mRNA 59340316 59346542 59340316 ID=Msa0560090-mRNA-1;Parent=Msa0560090;Name=Msa0560090-mRNA-1;_AED=0.17;_eAED=0.17;_QI=458|0.83|0.71|1|0.66|0.71|7|228|631
chr4_1 exon 59340316 59341083 59340316 ID=Msa0560090-mRNA-1:exon:18311;Parent=Msa0560090-mRNA-1
chr4_1 exon 59341764 59342095 59341764 ID=Msa0560090-mRNA-1:exon:18310;Parent=Msa0560090-mRNA-1
chr4_1 exon 59342301 59343141 59342301 ID=Msa0560090-mRNA-1:exon:18309;Parent=Msa0560090-mRNA-1
chr4_1 exon 59343551 59343620 59343551 ID=Msa0560090-mRNA-1:exon:18308;Parent=Msa0560090-mRNA-1
chr4_1 exon 59343756 59343869 59343756 ID=Msa0560090-mRNA-1:exon:18307;Parent=Msa0560090-mRNA-1
chr4_1 exon 59345363 59345448 59345363 ID=Msa0560090-mRNA-1:exon:18306;Parent=Msa0560090-mRNA-1
chr4_1 exon 59346172 59346542 59346172 ID=Msa0560090-mRNA-1:exon:18305;Parent=Msa0560090-mRNA-1
chr4_1 five_prime_UTR 59346172 59346542 59346172 ID=Msa0560090-mRNA-1:five_prime_utr;Parent=Msa0560090-mRNA-1
chr4_1 five_prime_UTR 59345363 59345448 59345363 ID=Msa0560090-mRNA-1:five_prime_utr;Parent=Msa0560090-mRNA-1
chr4_1 five_prime_UTR 59343869 59343869 59343869 ID=Msa0560090-mRNA-1:five_prime_utr;Parent=Msa0560090-mRNA-1
chr4_1 CDS 59343756 59343868 59343756 ID=Msa0560090-mRNA-1:cds;Parent=Msa0560090-mRNA-1
chr4_1 CDS 59343551 59343620 59343551 ID=Msa0560090-mRNA-1:cds;Parent=Msa0560090-mRNA-1
chr4_1 CDS 59342301 59343141 59342301 ID=Msa0560090-mRNA-1:cds;Parent=Msa0560090-mRNA-1
chr4_1 CDS 59341764 59342095 59341764 ID=Msa0560090-mRNA-1:cds;Parent=Msa0560090-mRNA-1
chr4_1 CDS 59340544 59341083 59340544 ID=Msa0560090-mRNA-1:cds;Parent=Msa0560090-mRNA-1
chr4_1 three_prime_UTR 59340316 59340543 59340316 ID=Msa0560090-mRNA-1:three_prime_utr;Parent=Msa0560090-mRNA-1
Gene Sequence

>Msa0560090

ATGTGGGAATCAGAAAGTGAAACAGCAGCTGGAAGGGAATATGGGGGTGGAGTTCTCACCTCAACCAAACATGGTGTTAAGATTGAAGGGTTTCATCAAAGAGGAAACTCATGGTATGTTTCAGCTGATATTCCAAGTGATCTTCAAGTCCAAATTGGAGAAGCCAGCTTCCACTTGCACAAGTATCCTTTGCTATCTAGAAGTGGAAAGCTGAACAGAATCCTATATGATTCTCGCGACCCCGACTTGAATAAGATAGCTATGGATGATCTCCCTGGAGGGCCTGAAGCATTTGAACTTGCAGCCAAATTCTGCTATGGAGTTGCTATTGATTTGACAGCAAGCAACATTTCCGGCCTAAGATGTGCTGCTGAGTATCTCGAAATGACTGAGGATCTAGAAGAAGGAAATCTTATATTCAAGACTGAAGCTTTCCTTAGCTATGTTGTTTTGTCTTCATGGAGAGACTCTATAGTAGTGTTGAAAAGCTCTGAAAAGCTGTCACCGTGGGCAGAAAATCTTCAAATTGTCCGAAGATGCAGCGAGTCTATAGCTTGGAAAGCTTGTGCTAATCCAAAAGGAATAAGGTGGGCGTATACCGGAAGAGCGACGAAAGCTTCAAGCCCAAAATGGAACGAAATGAAAGACTCGAGCCCGAGTAGAAATCAGCTAGTGCCTCCTGATTGGTGGTTTGAAGATGTTTCAATCCTTAGGATTGATCACTTTGTTAGAGTCATTACTGCTATTAAGGTAAAAGGTATGAGATTTGAACTGATTGGTGCTGGAATAATGCATTATGCAACTAAATGGCTACCAGGACTGGCGGGGAACGACACTACAATCCAAGGAGAGGAAACAAGCAACAACAGTAATAGTAGTTTTAGTAGCGGTGACAACAGTAGCTGGAGAGGTGGACTTCATATGATTGTTTCTGGAACTAGAGATGAAACTTCAAGTCTTCAAACCAAGGATCAAAAGATGGTTATTGAGAGTCTCATCAGCATAATTCCGCCGCAGAAAGACACTACACTTTCTGATCTTCTAATTCCTTGCTTTGAGAAAAGTGAAACTATGTATGATGTGGATCTTGTTCAGAGGTTGTTGGAGCATTTTCTTGTTCAAGAACAAACTGAAGGTTATAGTCCAAGTAGACAATCCTTTTCTGATCACAAGCATGTGGGAGGTAACCTGAATGCCAAGGCAAGAGTGGCAAGGCTTGTGGACAGTTATCTTACAGAGGTATCAAGAGATAGAAACCTTTCATCGACAAAGTTTCAGGTTCTTGCAGAAGCTTTACCTGAGTCGGCTAGAGTTTCTGACGATGGACTATATAGAGCAATTGATTCATATCTCAAGGCACATCCAACACTAACTGAGCATGAAAGGAAGCGTCTCTGTCGTGTAATGGATTGTCAAAAACTCTCCATTGACGCCTGCATGCACGCAGCTCAAAATGAACGACTGCCATTAAGGGTAGTAGTGCAAGTTCTATTCTCTGAACAAGTAAAGATAAGCAACGCACTAGCCAACAGCTCTCTAAAAGGCAGCGTTGAATCTCAGTACCAACCAATGGTAACAAACAGGAAAACACTTCTAGAAGGGACACCGCAATCTTTCCAAGAAGGATGGACAACAGCTAAGAAAGACATTAACACATTAAAGTTTGAACTTGAGAGTGTGAAAACAAAATATTTGGAGCTTCAACATGATATGGAAAATCTGCAGAAAAATTTCGATAAGCTGTTGAAGCAAAAGCACACATCAGCTTGGACTAGTGGGTGGAAGAAACTGAGCAAACTTACTAAAATGACAAATGTGGAAAATCATGATATGGTTCCAATTTCTGAAGAACCGAACAGAAAGACAACTAGAAGGTGGAGAAACTCAATATCTTGA
Protein sequence

>Msa0560090

MWESESETAAGREYGGGVLTSTKHGVKIEGFHQRGNSWYVSADIPSDLQVQIGEASFHLHKYPLLSRSGKLNRILYDSRDPDLNKIAMDDLPGGPEAFELAAKFCYGVAIDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIVVLKSSEKLSPWAENLQIVRRCSESIAWKACANPKGIRWAYTGRATKASSPKWNEMKDSSPSRNQLVPPDWWFEDVSILRIDHFVRVITAIKVKGMRFELIGAGIMHYATKWLPGLAGNDTTIQGEETSNNSNSSFSSGDNSSWRGGLHMIVSGTRDETSSLQTKDQKMVIESLISIIPPQKDTTLSDLLIPCFEKSETMYDVDLVQRLLEHFLVQEQTEGYSPSRQSFSDHKHVGGNLNAKARVARLVDSYLTEVSRDRNLSSTKFQVLAEALPESARVSDDGLYRAIDSYLKAHPTLTEHERKRLCRVMDCQKLSIDACMHAAQNERLPLRVVVQVLFSEQVKISNALANSSLKGSVESQYQPMVTNRKTLLEGTPQSFQEGWTTAKKDINTLKFELESVKTKYLELQHDMENLQKNFDKLLKQKHTSAWTSGWKKLSKLTKMTNVENHDMVPISEEPNRKTTRRWRNSIS*