Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0641250 | XP_003605293.2 | 96.032 | 126 | 4 | 1 | 1 | 125 | 1 | 126 | 5.59e-80 | 241 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0641250 | sp|Q43019|NLTP3_PRUDU | 55.118 | 127 | 51 | 4 | 1 | 125 | 1 | 123 | 2.06e-37 | 126 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0641250 | G7JIB4 | 96.032 | 126 | 4 | 1 | 1 | 125 | 1 | 126 | 2.67e-80 | 241 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002930 | Msa0641250 | 0.817554 | 3.105156e-52 | -8.615850e-47 |
| Msa0005050 | Msa0641250 | 0.822407 | 2.408875e-53 | -8.615850e-47 |
| Msa0006980 | Msa0641250 | 0.819207 | 1.311348e-52 | -8.615850e-47 |
| Msa0016120 | Msa0641250 | 0.821597 | 3.710274e-53 | -8.615850e-47 |
| Msa0019600 | Msa0641250 | 0.849536 | 3.036485e-60 | -8.615850e-47 |
| Msa0043210 | Msa0641250 | 0.816577 | 5.147150e-52 | -8.615850e-47 |
| Msa0050040 | Msa0641250 | 0.835297 | 1.821599e-56 | -8.615850e-47 |
| Msa0053110 | Msa0641250 | 0.838675 | 2.497081e-57 | -8.615850e-47 |
| Msa0098440 | Msa0641250 | 0.842554 | 2.409283e-58 | -8.615850e-47 |
| Msa0102990 | Msa0641250 | 0.835148 | 1.986388e-56 | -8.615850e-47 |
| Msa0106790 | Msa0641250 | 0.802655 | 5.059854e-49 | -8.615850e-47 |
| Msa0109880 | Msa0641250 | 0.821016 | 5.052475e-53 | -8.615850e-47 |
| Msa0111750 | Msa0641250 | 0.825147 | 5.493027e-54 | -8.615850e-47 |
| Msa0641250 | Msa0669840 | 0.884063 | 2.640432e-71 | -8.615850e-47 |
| Msa0641250 | Msa0680150 | 0.822715 | 2.042259e-53 | -8.615850e-47 |
| Msa0641250 | Msa0688500 | 0.881430 | 2.416013e-70 | -8.615850e-47 |
| Msa0641250 | Msa0707220 | 0.829508 | 4.950380e-55 | -8.615850e-47 |
| Msa0641250 | Msa0716800 | 0.808509 | 2.991578e-50 | -8.615850e-47 |
| Msa0641250 | Msa0720040 | 0.810322 | 1.221043e-50 | -8.615850e-47 |
| Msa0641250 | Msa0739580 | 0.838691 | 2.473471e-57 | -8.615850e-47 |
| Msa0641250 | Msa0747780 | 0.837331 | 5.535027e-57 | -8.615850e-47 |
| Msa0641250 | Msa0757870 | 0.845593 | 3.687524e-59 | -8.615850e-47 |
| Msa0641250 | Msa0761580 | 0.827594 | 1.435113e-54 | -8.615850e-47 |
| Msa0641250 | Msa0764820 | 0.849344 | 3.434603e-60 | -8.615850e-47 |
| Msa0641250 | Msa0770290 | 0.822947 | 1.803119e-53 | -8.615850e-47 |
| Msa0641250 | Msa0782360 | 0.828751 | 7.552279e-55 | -8.615850e-47 |
| Msa0641250 | Msa0807110 | 0.804235 | 2.381298e-49 | -8.615850e-47 |
| Msa0641250 | Msa0828830 | 0.804118 | 2.518355e-49 | -8.615850e-47 |
| Msa0641250 | Msa0831940 | 0.805054 | 1.606222e-49 | -8.615850e-47 |
| Msa0641250 | Msa0833040 | 0.811822 | 5.777418e-51 | -8.615850e-47 |
| Msa0641250 | Msa0840500 | 0.847014 | 1.511221e-59 | -8.615850e-47 |
| Msa0641250 | Msa0844560 | 0.834426 | 3.017806e-56 | -8.615850e-47 |
| Msa0641250 | Msa0851020 | 0.803778 | 2.963340e-49 | -8.615850e-47 |
| Msa0641250 | Msa0860280 | 0.842560 | 2.399671e-58 | -8.615850e-47 |
| Msa0641250 | Msa0867350 | 0.884215 | 2.319289e-71 | -8.615850e-47 |
| Msa0641250 | Msa0872310 | 0.805966 | 1.034240e-49 | -8.615850e-47 |
| Msa0641250 | Msa0873190 | 0.805526 | 1.279647e-49 | -8.615850e-47 |
| Msa0641250 | Msa0896970 | 0.809482 | 1.851646e-50 | -8.615850e-47 |
| Msa0641250 | Msa0898730 | 0.894993 | 1.461383e-75 | -8.615850e-47 |
| Msa0641250 | Msa0905550 | 0.810110 | 1.356311e-50 | -8.615850e-47 |
| Msa0641250 | Msa0911990 | 0.807871 | 4.090424e-50 | -8.615850e-47 |
| Msa0641250 | Msa0929870 | 0.823547 | 1.306142e-53 | -8.615850e-47 |
| Msa0641250 | Msa0937550 | 0.801613 | 8.290636e-49 | -8.615850e-47 |
| Msa0641250 | Msa0944760 | 0.839500 | 1.526973e-57 | -8.615850e-47 |
| Msa0641250 | Msa0944880 | 0.813709 | 2.231759e-51 | -8.615850e-47 |
| Msa0641250 | Msa0961560 | 0.801537 | 8.594303e-49 | -8.615850e-47 |
| Msa0641250 | Msa0979510 | 0.800413 | 1.458276e-48 | -8.615850e-47 |
| Msa0641250 | Msa0999300 | 0.840018 | 1.119293e-57 | -8.615850e-47 |
| Msa0641250 | Msa0999360 | 0.812825 | 3.488970e-51 | -8.615850e-47 |
| Msa0641250 | Msa0999410 | 0.800278 | 1.553264e-48 | -8.615850e-47 |
| Msa0641250 | Msa1001890 | 0.813763 | 2.171014e-51 | -8.615850e-47 |
| Msa0641250 | Msa1032450 | 0.816562 | 5.188341e-52 | -8.615850e-47 |
| Msa0641250 | Msa1037890 | 0.829408 | 5.235872e-55 | -8.615850e-47 |
| Msa0641250 | Msa1037900 | 0.845835 | 3.169667e-59 | -8.615850e-47 |
| Msa0641250 | Msa1037910 | 0.808461 | 3.062406e-50 | -8.615850e-47 |
| Msa0641250 | Msa1041530 | 0.853090 | 3.006247e-61 | -8.615850e-47 |
| Msa0641250 | Msa1042670 | 0.802023 | 6.830009e-49 | -8.615850e-47 |
| Msa0641250 | Msa1066490 | 0.809427 | 1.902208e-50 | -8.615850e-47 |
| Msa0641250 | Msa1070420 | 0.832107 | 1.141598e-55 | -8.615850e-47 |
| Msa0641250 | Msa1081570 | 0.850628 | 1.501810e-60 | -8.615850e-47 |
| Msa0641250 | Msa1096210 | 0.808912 | 2.453290e-50 | -8.615850e-47 |
| Msa0641250 | Msa1123880 | 0.851648 | 7.738619e-61 | -8.615850e-47 |
| Msa0641250 | Msa1127140 | 0.858548 | 7.636962e-63 | -8.615850e-47 |
| Msa0641250 | Msa1129950 | 0.819044 | 1.428087e-52 | -8.615850e-47 |
| Msa0641250 | Msa1129960 | 0.852786 | 3.672536e-61 | -8.615850e-47 |
| Msa0641250 | Msa1129970 | 0.837767 | 4.280072e-57 | -8.615850e-47 |
| Msa0641250 | Msa1130010 | 0.850473 | 1.660393e-60 | -8.615850e-47 |
| Msa0641250 | Msa1134110 | 0.801374 | 9.281599e-49 | -8.615850e-47 |
| Msa0641250 | Msa1145020 | 0.822385 | 2.436624e-53 | -8.615850e-47 |
| Msa0641250 | Msa1166400 | 0.854746 | 1.002588e-61 | -8.615850e-47 |
| Msa0641250 | Msa1169710 | 0.809670 | 1.686894e-50 | -8.615850e-47 |
| Msa0641250 | Msa1169990 | 0.831435 | 1.671633e-55 | -8.615850e-47 |
| Msa0641250 | Msa1176160 | 0.834931 | 2.252442e-56 | -8.615850e-47 |
| Msa0641250 | Msa1200440 | 0.823642 | 1.241249e-53 | -8.615850e-47 |
| Msa0641250 | Msa1201110 | 0.874782 | 5.158539e-68 | -8.615850e-47 |
| Msa0641250 | Msa1201160 | 0.870853 | 1.066131e-66 | -8.615850e-47 |
| Msa0641250 | Msa1228190 | 0.822175 | 2.725769e-53 | -8.615850e-47 |
| Msa0641250 | Msa1233560 | 0.825545 | 4.422878e-54 | -8.615850e-47 |
| Msa0641250 | Msa1294290 | 0.841609 | 4.282869e-58 | -8.615850e-47 |
| Msa0641250 | Msa1305510 | 0.865865 | 4.330085e-65 | -8.615850e-47 |
| Msa0641250 | Msa1307190 | 0.819140 | 1.357838e-52 | -8.615850e-47 |
| Msa0641250 | Msa1316540 | 0.806166 | 9.384241e-50 | -8.615850e-47 |
| Msa0641250 | Msa1336780 | 0.808103 | 3.651114e-50 | -8.615850e-47 |
| Msa0641250 | Msa1355400 | 0.830221 | 3.317776e-55 | -8.615850e-47 |
| Msa0641250 | Msa1374550 | 0.821879 | 3.192359e-53 | -8.615850e-47 |
| Msa0641250 | Msa1378870 | 0.800685 | 1.283240e-48 | -8.615850e-47 |
| Msa0641250 | Msa1379970 | 0.828261 | 9.916301e-55 | -8.615850e-47 |
| Msa0641250 | Msa1394890 | 0.810630 | 1.047918e-50 | -8.615850e-47 |
| Msa0641250 | Msa1406780 | 0.854223 | 1.419924e-61 | -8.615850e-47 |
| Msa0641250 | Msa1408870 | 0.804830 | 1.789082e-49 | -8.615850e-47 |
| Msa0641250 | Msa1414930 | 0.830672 | 2.574221e-55 | -8.615850e-47 |
| Msa0641250 | Msa1420060 | 0.857310 | 1.780702e-62 | -8.615850e-47 |
| Msa0641250 | Msa1421550 | 0.856004 | 4.313065e-62 | -8.615850e-47 |
| Msa0641250 | Msa1423460 | 0.837980 | 3.772436e-57 | -8.615850e-47 |
| Msa0641250 | Msa1431850 | 0.851119 | 1.092021e-60 | -8.615850e-47 |
| Msa0641250 | Msa1437710 | 0.821216 | 4.543439e-53 | -8.615850e-47 |
| Msa0641250 | Msa1449940 | 0.804879 | 1.747563e-49 | -8.615850e-47 |
| Msa0641250 | Msa1455320 | 0.813992 | 1.932893e-51 | -8.615850e-47 |
| Msa0641250 | Msa1461060 | 0.841714 | 4.019032e-58 | -8.615850e-47 |
| Msa0137150 | Msa0641250 | 0.808671 | 2.761663e-50 | -8.615850e-47 |
| Msa0141120 | Msa0641250 | 0.814554 | 1.452524e-51 | -8.615850e-47 |
| Msa0141600 | Msa0641250 | 0.816075 | 6.664990e-52 | -8.615850e-47 |
| Msa0147560 | Msa0641250 | 0.836915 | 7.071218e-57 | -8.615850e-47 |
| Msa0149140 | Msa0641250 | 0.827918 | 1.199761e-54 | -8.615850e-47 |
| Msa0153420 | Msa0641250 | 0.804033 | 2.622459e-49 | -8.615850e-47 |
| Msa0156250 | Msa0641250 | 0.819980 | 8.732283e-53 | -8.615850e-47 |
| Msa0185490 | Msa0641250 | 0.834775 | 2.466610e-56 | -8.615850e-47 |
| Msa0197100 | Msa0641250 | 0.816324 | 5.865169e-52 | -8.615850e-47 |
| Msa0203030 | Msa0641250 | 0.825342 | 4.938897e-54 | -8.615850e-47 |
| Msa0212150 | Msa0641250 | 0.860757 | 1.653143e-63 | -8.615850e-47 |
| Msa0215640 | Msa0641250 | 0.812262 | 4.632444e-51 | -8.615850e-47 |
| Msa0219190 | Msa0641250 | 0.849883 | 2.428680e-60 | -8.615850e-47 |
| Msa0221290 | Msa0641250 | 0.804923 | 1.711250e-49 | -8.615850e-47 |
| Msa0232920 | Msa0641250 | 0.801889 | 7.275769e-49 | -8.615850e-47 |
| Msa0370600 | Msa0641250 | 0.818306 | 2.099324e-52 | -8.615850e-47 |
| Msa0375680 | Msa0641250 | 0.833623 | 4.794778e-56 | -8.615850e-47 |
| Msa0392420 | Msa0641250 | 0.841713 | 4.021240e-58 | -8.615850e-47 |
| Msa0392460 | Msa0641250 | 0.840474 | 8.510905e-58 | -8.615850e-47 |
| Msa0392490 | Msa0641250 | 0.841086 | 5.880388e-58 | -8.615850e-47 |
| Msa0406000 | Msa0641250 | 0.859948 | 2.904771e-63 | -8.615850e-47 |
| Msa0408630 | Msa0641250 | 0.804470 | 2.127387e-49 | -8.615850e-47 |
| Msa0418200 | Msa0641250 | 0.829665 | 4.533770e-55 | -8.615850e-47 |
| Msa0424330 | Msa0641250 | 0.806629 | 7.498546e-50 | -8.615850e-47 |
| Msa0424340 | Msa0641250 | 0.827313 | 1.676403e-54 | -8.615850e-47 |
| Msa0424350 | Msa0641250 | 0.821450 | 4.010866e-53 | -8.615850e-47 |
| Msa0436500 | Msa0641250 | 0.838572 | 2.655757e-57 | -8.615850e-47 |
| Msa0451400 | Msa0641250 | 0.888579 | 5.207677e-73 | -8.615850e-47 |
| Msa0464540 | Msa0641250 | 0.825481 | 4.578768e-54 | -8.615850e-47 |
| Msa0471240 | Msa0641250 | 0.805222 | 1.481543e-49 | -8.615850e-47 |
| Msa0239030 | Msa0641250 | 0.817261 | 3.614871e-52 | -8.615850e-47 |
| Msa0252770 | Msa0641250 | 0.836979 | 6.809612e-57 | -8.615850e-47 |
| Msa0276740 | Msa0641250 | 0.803768 | 2.977930e-49 | -8.615850e-47 |
| Msa0289920 | Msa0641250 | 0.857422 | 1.650655e-62 | -8.615850e-47 |
| Msa0298240 | Msa0641250 | 0.850170 | 2.019055e-60 | -8.615850e-47 |
| Msa0306120 | Msa0641250 | 0.842224 | 2.946907e-58 | -8.615850e-47 |
| Msa0316680 | Msa0641250 | 0.820837 | 5.554063e-53 | -8.615850e-47 |
| Msa0322830 | Msa0641250 | 0.803374 | 3.594901e-49 | -8.615850e-47 |
| Msa0322840 | Msa0641250 | 0.803521 | 3.350413e-49 | -8.615850e-47 |
| Msa0329620 | Msa0641250 | 0.843933 | 1.033107e-58 | -8.615850e-47 |
| Msa0337850 | Msa0641250 | 0.801082 | 1.065010e-48 | -8.615850e-47 |
| Msa0343660 | Msa0641250 | 0.802589 | 5.221875e-49 | -8.615850e-47 |
| Msa0344570 | Msa0641250 | 0.830810 | 2.381425e-55 | -8.615850e-47 |
| Msa0351770 | Msa0641250 | 0.813552 | 2.416189e-51 | -8.615850e-47 |
| Msa0359250 | Msa0641250 | 0.878140 | 3.572210e-69 | -8.615850e-47 |
| Msa0487570 | Msa0641250 | 0.845467 | 3.988601e-59 | -8.615850e-47 |
| Msa0487630 | Msa0641250 | 0.845416 | 4.116703e-59 | -8.615850e-47 |
| Msa0492190 | Msa0641250 | 0.855509 | 6.016434e-62 | -8.615850e-47 |
| Msa0515950 | Msa0641250 | 0.807834 | 4.165680e-50 | -8.615850e-47 |
| Msa0534930 | Msa0641250 | 0.826486 | 2.641553e-54 | -8.615850e-47 |
| Msa0535040 | Msa0641250 | 0.838182 | 3.347567e-57 | -8.615850e-47 |
| Msa0537920 | Msa0641250 | 0.942678 | 4.693121e-102 | -8.615850e-47 |
| Msa0538220 | Msa0641250 | 0.892227 | 1.928263e-74 | -8.615850e-47 |
| Msa0560090 | Msa0641250 | 0.803076 | 4.142793e-49 | -8.615850e-47 |
| Msa0575740 | Msa0641250 | 0.802712 | 4.926476e-49 | -8.615850e-47 |
| Msa0591790 | Msa0641250 | 0.851619 | 7.889778e-61 | -8.615850e-47 |
| Msa0594090 | Msa0641250 | 0.912532 | 1.749680e-83 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0641250 | MtrunA17_Chr4g0012891 | 96.032 | 126 | 4 | 1 | 1 | 125 | 1 | 126 | 5.14e-84 | 241 |
| Msa0641250 | MtrunA17_Chr7g0244841 | 45.455 | 121 | 60 | 2 | 4 | 124 | 3 | 117 | 7.18e-32 | 109 |
| Msa0641250 | MtrunA17_Chr7g0244831 | 44.262 | 122 | 63 | 2 | 4 | 125 | 3 | 119 | 4.05e-30 | 104 |
| Msa0641250 | MtrunA17_Chr4g0012951 | 46.154 | 117 | 57 | 3 | 9 | 125 | 5 | 115 | 4.49e-30 | 104 |
| Msa0641250 | MtrunA17_Chr7g0244691 | 41.803 | 122 | 66 | 2 | 4 | 125 | 3 | 119 | 2.29e-26 | 95.1 |
| Msa0641250 | MtrunA17_Chr4g0012901 | 37.600 | 125 | 74 | 1 | 1 | 125 | 1 | 121 | 4.62e-26 | 94.4 |
| Msa0641250 | MtrunA17_Chr4g0013001 | 41.880 | 117 | 62 | 3 | 9 | 125 | 5 | 115 | 4.69e-26 | 94.4 |
| Msa0641250 | MtrunA17_Chr4g0012961 | 41.880 | 117 | 62 | 3 | 9 | 125 | 5 | 115 | 5.89e-26 | 94.0 |
| Msa0641250 | MtrunA17_Chr4g0012991 | 41.880 | 117 | 62 | 3 | 9 | 125 | 60 | 170 | 1.53e-24 | 92.0 |
| Msa0641250 | MtrunA17_Chr2g0309241 | 38.333 | 120 | 67 | 3 | 6 | 124 | 1 | 114 | 2.43e-23 | 87.4 |
| Msa0641250 | MtrunA17_Chr4g0013251 | 40.984 | 122 | 65 | 3 | 4 | 125 | 2 | 116 | 2.92e-23 | 87.4 |
| Msa0641250 | MtrunA17_Chr1g0165761 | 44.715 | 123 | 61 | 3 | 4 | 125 | 3 | 119 | 7.43e-23 | 86.3 |
| Msa0641250 | MtrunA17_Chr7g0244681 | 42.017 | 119 | 64 | 2 | 4 | 122 | 3 | 116 | 8.11e-23 | 86.3 |
| Msa0641250 | MtrunA17_Chr7g0244741 | 43.548 | 124 | 63 | 3 | 4 | 125 | 3 | 121 | 1.33e-22 | 85.5 |
| Msa0641250 | MtrunA17_Chr7g0244641 | 36.585 | 123 | 72 | 3 | 4 | 125 | 3 | 120 | 8.04e-22 | 83.6 |
| Msa0641250 | MtrunA17_Chr4g0013261 | 40.984 | 122 | 65 | 3 | 4 | 125 | 2 | 116 | 9.13e-22 | 83.6 |
| Msa0641250 | MtrunA17_Chr7g0244671 | 38.843 | 121 | 68 | 3 | 4 | 123 | 3 | 118 | 1.05e-21 | 84.3 |
| Msa0641250 | MtrunA17_Chr4g0013211 | 37.607 | 117 | 67 | 3 | 9 | 125 | 5 | 115 | 1.59e-21 | 82.8 |
| Msa0641250 | MtrunA17_Chr7g0244821 | 41.600 | 125 | 62 | 4 | 4 | 125 | 3 | 119 | 2.35e-21 | 82.8 |
| Msa0641250 | MtrunA17_Chr7g0244811 | 37.795 | 127 | 71 | 4 | 1 | 125 | 1 | 121 | 1.47e-19 | 77.8 |
| Msa0641250 | MtrunA17_Chr7g0244761 | 36.066 | 122 | 73 | 2 | 4 | 125 | 28 | 144 | 2.33e-19 | 78.2 |
| Msa0641250 | MtrunA17_Chr7g0244721 | 36.885 | 122 | 71 | 3 | 4 | 124 | 3 | 119 | 2.35e-19 | 77.4 |
| Msa0641250 | MtrunA17_Chr7g0244661 | 39.837 | 123 | 62 | 4 | 4 | 125 | 3 | 114 | 1.02e-18 | 75.5 |
| Msa0641250 | MtrunA17_Chr7g0244791 | 35.537 | 121 | 73 | 2 | 5 | 125 | 9 | 124 | 1.11e-18 | 75.9 |
| Msa0641250 | MtrunA17_Chr7g0244751 | 36.364 | 121 | 72 | 2 | 4 | 124 | 3 | 118 | 1.45e-16 | 70.1 |
| Msa0641250 | MtrunA17_Chr7g0244651 | 37.097 | 124 | 72 | 3 | 4 | 125 | 3 | 122 | 2.36e-16 | 69.7 |
| Msa0641250 | MtrunA17_Chr7g0233431 | 26.891 | 119 | 78 | 2 | 6 | 124 | 21 | 130 | 1.50e-14 | 65.5 |
| Msa0641250 | MtrunA17_Chr3g0107481 | 31.200 | 125 | 73 | 5 | 1 | 124 | 1 | 113 | 3.63e-13 | 61.2 |
| Msa0641250 | MtrunA17_Chr3g0095991 | 28.455 | 123 | 82 | 2 | 2 | 123 | 3 | 120 | 5.16e-13 | 60.8 |
| Msa0641250 | MtrunA17_Chr3g0101431 | 31.624 | 117 | 74 | 2 | 10 | 125 | 10 | 121 | 5.22e-13 | 61.2 |
| Msa0641250 | MtrunA17_Chr3g0095951 | 28.455 | 123 | 82 | 2 | 2 | 123 | 3 | 120 | 1.67e-12 | 59.7 |
| Msa0641250 | MtrunA17_Chr3g0105021 | 30.769 | 117 | 75 | 2 | 10 | 125 | 11 | 122 | 3.82e-12 | 58.9 |
| Msa0641250 | MtrunA17_Chr3g0105011 | 30.769 | 117 | 75 | 2 | 10 | 125 | 11 | 122 | 3.82e-12 | 58.9 |
| Msa0641250 | MtrunA17_Chr1g0165751 | 37.500 | 120 | 68 | 3 | 4 | 122 | 3 | 116 | 3.85e-12 | 58.9 |
| Msa0641250 | MtrunA17_Chr3g0104971 | 29.752 | 121 | 79 | 2 | 6 | 125 | 7 | 122 | 4.48e-12 | 58.5 |
| Msa0641250 | MtrunA17_Chr3g0104921 | 34.375 | 96 | 57 | 2 | 31 | 125 | 22 | 112 | 4.75e-12 | 58.2 |
| Msa0641250 | MtrunA17_Chr3g0104911 | 34.375 | 96 | 57 | 2 | 31 | 125 | 22 | 112 | 4.75e-12 | 58.2 |
| Msa0641250 | MtrunA17_Chr3g0104951 | 34.375 | 96 | 57 | 2 | 31 | 125 | 32 | 122 | 5.04e-12 | 58.5 |
| Msa0641250 | MtrunA17_Chr3g0104931 | 34.375 | 96 | 57 | 2 | 31 | 125 | 32 | 122 | 5.04e-12 | 58.5 |
| Msa0641250 | MtrunA17_Chr3g0104941 | 34.375 | 96 | 57 | 2 | 31 | 125 | 32 | 122 | 5.04e-12 | 58.5 |
| Msa0641250 | MtrunA17_Chr3g0096021 | 27.642 | 123 | 83 | 2 | 2 | 123 | 3 | 120 | 6.44e-12 | 58.2 |
| Msa0641250 | MtrunA17_Chr3g0104901 | 28.571 | 126 | 79 | 3 | 6 | 125 | 2 | 122 | 7.09e-12 | 58.2 |
| Msa0641250 | MtrunA17_Chr3g0096031 | 27.642 | 123 | 83 | 2 | 2 | 123 | 3 | 120 | 7.89e-12 | 58.2 |
| Msa0641250 | MtrunA17_Chr3g0104981 | 30.000 | 120 | 78 | 2 | 6 | 124 | 7 | 121 | 8.60e-12 | 57.8 |
| Msa0641250 | MtrunA17_Chr3g0104991 | 29.752 | 121 | 79 | 2 | 6 | 125 | 7 | 122 | 9.46e-12 | 57.8 |
| Msa0641250 | MtrunA17_Chr3g0105001 | 29.412 | 119 | 78 | 2 | 6 | 123 | 7 | 120 | 1.56e-11 | 57.4 |
| Msa0641250 | MtrunA17_Chr3g0105041 | 34.375 | 96 | 57 | 2 | 31 | 125 | 32 | 122 | 1.68e-11 | 57.0 |
| Msa0641250 | MtrunA17_Chr3g0104961 | 28.926 | 121 | 80 | 2 | 6 | 125 | 7 | 122 | 6.18e-11 | 55.8 |
| Msa0641250 | MtrunA17_Chr4g0012921 | 32.773 | 119 | 73 | 4 | 9 | 125 | 5 | 118 | 7.26e-11 | 55.5 |
| Msa0641250 | MtrunA17_Chr3g0105031 | 30.435 | 115 | 74 | 2 | 10 | 123 | 1 | 110 | 9.07e-11 | 55.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0641250 | AT2G15050.3 | 50.833 | 120 | 53 | 3 | 9 | 125 | 6 | 122 | 3.44e-32 | 110 |
| Msa0641250 | AT2G15050.1 | 50.847 | 118 | 52 | 3 | 9 | 123 | 6 | 120 | 2.97e-31 | 108 |
| Msa0641250 | AT2G38540.1 | 43.590 | 117 | 62 | 2 | 9 | 125 | 6 | 118 | 2.28e-29 | 103 |
| Msa0641250 | AT2G15050.2 | 51.351 | 111 | 48 | 3 | 9 | 116 | 6 | 113 | 2.33e-29 | 103 |
| Msa0641250 | AT5G01870.1 | 44.348 | 115 | 58 | 4 | 11 | 125 | 8 | 116 | 1.45e-28 | 100 |
| Msa0641250 | AT3G08770.1 | 48.515 | 101 | 48 | 3 | 25 | 125 | 17 | 113 | 5.42e-27 | 97.1 |
| Msa0641250 | AT3G08770.2 | 49.495 | 99 | 46 | 3 | 25 | 123 | 17 | 111 | 2.52e-26 | 95.5 |
| Msa0641250 | AT5G59320.1 | 46.847 | 111 | 53 | 3 | 15 | 125 | 11 | 115 | 1.54e-25 | 93.2 |
| Msa0641250 | AT5G59310.1 | 46.364 | 110 | 47 | 4 | 16 | 125 | 15 | 112 | 1.49e-24 | 90.9 |
| Msa0641250 | AT2G38530.1 | 42.735 | 117 | 63 | 2 | 9 | 125 | 6 | 118 | 9.04e-24 | 89.0 |
| Msa0641250 | AT3G51600.1 | 42.735 | 117 | 63 | 2 | 9 | 125 | 6 | 118 | 5.14e-23 | 87.0 |
| Msa0641250 | AT3G51590.1 | 39.316 | 117 | 65 | 3 | 9 | 125 | 6 | 116 | 2.42e-22 | 85.5 |
| Msa0641250 | AT2G18370.1 | 35.897 | 117 | 68 | 2 | 10 | 124 | 4 | 115 | 3.28e-20 | 79.7 |
| Msa0641250 | AT4G33355.1 | 34.426 | 122 | 73 | 3 | 4 | 125 | 5 | 119 | 2.02e-15 | 67.4 |
| Msa0641250 | AT4G33355.2 | 34.454 | 119 | 71 | 3 | 4 | 122 | 5 | 116 | 2.49e-14 | 64.7 |
Find 49 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTTGAAGTTGCTTCTTTC+TGG | 0.013551 | 4_3:-41251814 | Msa0641250:three_prime_UTR |
| GTTTATTTGGGAATGAAATT+TGG | 0.179642 | 4_3:-41251655 | Msa0641250:three_prime_UTR |
| AATGTTATGTGATGTTTATT+TGG | 0.231744 | 4_3:-41251668 | Msa0641250:three_prime_UTR |
| TGGTTTGAGCCATAGTATTA+AGG | 0.282339 | 4_3:+41252482 | None:intergenic |
| ATTGTGTTTCTTGTAACTTT+TGG | 0.294759 | 4_3:-41252628 | Msa0641250:CDS |
| GGCAACTAGGCTTGTTTGTT+TGG | 0.295657 | 4_3:-41252653 | Msa0641250:CDS |
| GCCCTAATACCGACTGTAAC+AGG | 0.378156 | 4_3:-41252324 | Msa0641250:intron |
| TACCTGTTACAGTCGGTATT+AGG | 0.379758 | 4_3:+41252322 | None:intergenic |
| ATGTTATGTGATGTTTATTT+GGG | 0.380149 | 4_3:-41251667 | Msa0641250:three_prime_UTR |
| GGGTATAAGCTTGTCACAAC+TGG | 0.381388 | 4_3:+41252571 | None:intergenic |
| GAAGACCAGCAGCAAGGTTA+AGG | 0.386841 | 4_3:+41252383 | None:intergenic |
| ACCTGTTACAGTCGGTATTA+GGG | 0.395247 | 4_3:+41252323 | None:intergenic |
| CATCATGGGTTACTCAACTA+TGG | 0.397979 | 4_3:-41252674 | Msa0641250:exon |
| AATAAACATCACATAACATT+AGG | 0.406045 | 4_3:+41251671 | None:intergenic |
| GTAACAGCTGCTTCAGCCTT+AGG | 0.410392 | 4_3:+41252604 | None:intergenic |
| CTCTATAATACATGCTATAG+TGG | 0.418803 | 4_3:+41251723 | None:intergenic |
| AGTAAGGAACCTTAATACTA+TGG | 0.425103 | 4_3:-41252491 | Msa0641250:CDS |
| AACAGCTCTACGATCATTTG+TGG | 0.431202 | 4_3:+41252462 | None:intergenic |
| TGTTAGTGTGTGAGAATAAG+AGG | 0.437889 | 4_3:-41251865 | Msa0641250:three_prime_UTR |
| AGTCGGTATTAGGGCTGATC+TGG | 0.443403 | 4_3:+41252332 | None:intergenic |
| TTAAACCTTAACCTTGCTGC+TGG | 0.450896 | 4_3:-41252388 | Msa0641250:CDS |
| TGTGTTTCTTACATTATGAC+TGG | 0.454062 | 4_3:-41252547 | Msa0641250:CDS |
| CACAGTGTTGTAATGGAGTA+AGG | 0.461553 | 4_3:-41252507 | Msa0641250:CDS |
| GAATGAAATTTGGAAAGGTT+AGG | 0.464354 | 4_3:-41251645 | Msa0641250:three_prime_UTR |
| CTACTACATTAGCCTCATCA+TGG | 0.479493 | 4_3:-41252689 | Msa0641250:exon |
| AAATAACAAAATATTTATGT+TGG | 0.485884 | 4_3:+41252712 | None:intergenic |
| GTTAACAGCATTCTTAATGC+AGG | 0.496302 | 4_3:+41252435 | None:intergenic |
| AAGAATGCTGTTAACCAAAG+TGG | 0.504107 | 4_3:-41252427 | Msa0641250:CDS |
| TTTGGGAATGAAATTTGGAA+AGG | 0.521335 | 4_3:-41251650 | Msa0641250:three_prime_UTR |
| ATGTTAACACCACATTTCCT+TGG | 0.522311 | 4_3:+41252361 | None:intergenic |
| GTATTAGGGCTGATCTGGTA+AGG | 0.526182 | 4_3:+41252337 | None:intergenic |
| TAGTGTAACTGAAACCACTT+TGG | 0.541012 | 4_3:+41252413 | None:intergenic |
| GTGCCTGCACAGTGTTGTAA+TGG | 0.541888 | 4_3:-41252514 | Msa0641250:CDS |
| GCTTGTCACAACTGGACCAC+AGG | 0.541996 | 4_3:+41252579 | None:intergenic |
| AAAATATTTATGTTGGCAAG+TGG | 0.549592 | 4_3:+41252719 | None:intergenic |
| ACCTTGCTGCTGGTCTTCCA+AGG | 0.551966 | 4_3:-41252378 | Msa0641250:CDS |
| TACTACATTAGCCTCATCAT+GGG | 0.552938 | 4_3:-41252688 | Msa0641250:exon |
| GTTACTCAACTATGGCAACT+AGG | 0.565651 | 4_3:-41252666 | Msa0641250:CDS |
| GTTTCTTACATTATGACTGG+TGG | 0.579604 | 4_3:-41252544 | Msa0641250:CDS |
| GCTGGTCTTCCAAGGAAATG+TGG | 0.584199 | 4_3:-41252370 | Msa0641250:CDS |
| GAAGCAGCTGTTACATCCTG+TGG | 0.593294 | 4_3:-41252595 | Msa0641250:CDS |
| ACTCCATTACAACACTGTGC+AGG | 0.594186 | 4_3:+41252511 | None:intergenic |
| TGTTAGTGTACACTTTATTG+TGG | 0.612731 | 4_3:-41251746 | Msa0641250:three_prime_UTR |
| TCCTTGGAAGACCAGCAGCA+AGG | 0.622205 | 4_3:+41252377 | None:intergenic |
| TGTGTCTGTGTGTTAGTGTG+TGG | 0.630384 | 4_3:-41251775 | Msa0641250:three_prime_UTR |
| GTCATAATGTAAGAAACACA+AGG | 0.653065 | 4_3:+41252550 | None:intergenic |
| TAGTTGAGTAACCCATGATG+AGG | 0.658599 | 4_3:+41252677 | None:intergenic |
| TAAGTGGTACCTGTTACAGT+CGG | 0.691959 | 4_3:+41252315 | None:intergenic |
| TCATAATGTAAGAAACACAA+GGG | 0.708823 | 4_3:+41252551 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAACAAAATATTTATGT+TGG | + | chr4_3:41251647-41251666 | None:intergenic | 10.0% |
| !! | AAATAACAAAATATTTATGT+TGG | + | chr4_3:41251647-41251666 | None:intergenic | 10.0% |
| !! | GAAAATACATATATACTAAA+GGG | + | chr4_3:41252091-41252110 | None:intergenic | 15.0% |
| !! | AGAAAATACATATATACTAA+AGG | + | chr4_3:41252092-41252111 | None:intergenic | 15.0% |
| !!! | TTTAATTTTCTCTCAAAAAA+TGG | - | chr4_3:41252130-41252149 | Msa0641250:intron | 15.0% |
| !! | AACATAACATTATAGTAAAA+TGG | + | chr4_3:41252258-41252277 | None:intergenic | 15.0% |
| !! | GAAAATACATATATACTAAA+GGG | + | chr4_3:41252091-41252110 | None:intergenic | 15.0% |
| !! | AGAAAATACATATATACTAA+AGG | + | chr4_3:41252092-41252111 | None:intergenic | 15.0% |
| !!! | TTTAATTTTCTCTCAAAAAA+TGG | - | chr4_3:41252130-41252149 | Msa0641250:intron | 15.0% |
| !! | AACATAACATTATAGTAAAA+TGG | + | chr4_3:41252258-41252277 | None:intergenic | 15.0% |
| !! | ACATATGTGAATATTATAAG+TGG | + | chr4_3:41252060-41252079 | None:intergenic | 20.0% |
| !! | AATAAACATCACATAACATT+AGG | + | chr4_3:41252688-41252707 | None:intergenic | 20.0% |
| !! | AATGTTATGTGATGTTTATT+TGG | - | chr4_3:41252688-41252707 | Msa0641250:exon | 20.0% |
| !! | ATGTTATGTGATGTTTATTT+GGG | - | chr4_3:41252689-41252708 | Msa0641250:exon | 20.0% |
| !! | ACATATGTGAATATTATAAG+TGG | + | chr4_3:41252060-41252079 | None:intergenic | 20.0% |
| !! | AATAAACATCACATAACATT+AGG | + | chr4_3:41252688-41252707 | None:intergenic | 20.0% |
| !! | AATGTTATGTGATGTTTATT+TGG | - | chr4_3:41252688-41252707 | Msa0641250:exon | 20.0% |
| !! | ATGTTATGTGATGTTTATTT+GGG | - | chr4_3:41252689-41252708 | Msa0641250:exon | 20.0% |
| ! | AAAATATTTATGTTGGCAAG+TGG | + | chr4_3:41251640-41251659 | None:intergenic | 25.0% |
| !! | ATTGTGTTTCTTGTAACTTT+TGG | - | chr4_3:41251728-41251747 | Msa0641250:three_prime_UTR | 25.0% |
| ! | TCATAATGTAAGAAACACAA+GGG | + | chr4_3:41251808-41251827 | None:intergenic | 25.0% |
| ! | TAATCTTGTCACATATTGTA+TGG | + | chr4_3:41252294-41252313 | None:intergenic | 25.0% |
| !!! | ATACATATCAAGTTTTTGGT+TGG | + | chr4_3:41252366-41252385 | None:intergenic | 25.0% |
| ! | AACCAAAAACTTGATATGTA+TGG | - | chr4_3:41252365-41252384 | Msa0641250:CDS | 25.0% |
| !! | TTCCATACATATCAAGTTTT+TGG | + | chr4_3:41252370-41252389 | None:intergenic | 25.0% |
| ! | AACTCATCAGACATATATAT+TGG | + | chr4_3:41252400-41252419 | None:intergenic | 25.0% |
| ! | GTTTATTTGGGAATGAAATT+TGG | - | chr4_3:41252701-41252720 | Msa0641250:five_prime_UTR | 25.0% |
| ! | AAAATATTTATGTTGGCAAG+TGG | + | chr4_3:41251640-41251659 | None:intergenic | 25.0% |
| !! | ATTGTGTTTCTTGTAACTTT+TGG | - | chr4_3:41251728-41251747 | Msa0641250:three_prime_UTR | 25.0% |
| ! | TCATAATGTAAGAAACACAA+GGG | + | chr4_3:41251808-41251827 | None:intergenic | 25.0% |
| ! | TAATCTTGTCACATATTGTA+TGG | + | chr4_3:41252294-41252313 | None:intergenic | 25.0% |
| !!! | ATACATATCAAGTTTTTGGT+TGG | + | chr4_3:41252366-41252385 | None:intergenic | 25.0% |
| ! | AACCAAAAACTTGATATGTA+TGG | - | chr4_3:41252365-41252384 | Msa0641250:CDS | 25.0% |
| !! | TTCCATACATATCAAGTTTT+TGG | + | chr4_3:41252370-41252389 | None:intergenic | 25.0% |
| ! | AACTCATCAGACATATATAT+TGG | + | chr4_3:41252400-41252419 | None:intergenic | 25.0% |
| ! | GTTTATTTGGGAATGAAATT+TGG | - | chr4_3:41252701-41252720 | Msa0641250:five_prime_UTR | 25.0% |
| GTCATAATGTAAGAAACACA+AGG | + | chr4_3:41251809-41251828 | None:intergenic | 30.0% | |
| TGTGTTTCTTACATTATGAC+TGG | - | chr4_3:41251809-41251828 | Msa0641250:three_prime_UTR | 30.0% | |
| AGTAAGGAACCTTAATACTA+TGG | - | chr4_3:41251865-41251884 | Msa0641250:three_prime_UTR | 30.0% | |
| TGTGACAAGATTAAAGTAGT+TGG | - | chr4_3:41252301-41252320 | Msa0641250:intron | 30.0% | |
| TGTTAGTGTACACTTTATTG+TGG | - | chr4_3:41252610-41252629 | Msa0641250:CDS | 30.0% | |
| CTCTATAATACATGCTATAG+TGG | + | chr4_3:41252636-41252655 | None:intergenic | 30.0% | |
| TTTGGGAATGAAATTTGGAA+AGG | - | chr4_3:41252706-41252725 | Msa0641250:five_prime_UTR | 30.0% | |
| GAATGAAATTTGGAAAGGTT+AGG | - | chr4_3:41252711-41252730 | Msa0641250:five_prime_UTR | 30.0% | |
| GTCATAATGTAAGAAACACA+AGG | + | chr4_3:41251809-41251828 | None:intergenic | 30.0% | |
| TGTGTTTCTTACATTATGAC+TGG | - | chr4_3:41251809-41251828 | Msa0641250:three_prime_UTR | 30.0% | |
| AGTAAGGAACCTTAATACTA+TGG | - | chr4_3:41251865-41251884 | Msa0641250:three_prime_UTR | 30.0% | |
| TGTGACAAGATTAAAGTAGT+TGG | - | chr4_3:41252301-41252320 | Msa0641250:intron | 30.0% | |
| TGTTAGTGTACACTTTATTG+TGG | - | chr4_3:41252610-41252629 | Msa0641250:CDS | 30.0% | |
| CTCTATAATACATGCTATAG+TGG | + | chr4_3:41252636-41252655 | None:intergenic | 30.0% | |
| TTTGGGAATGAAATTTGGAA+AGG | - | chr4_3:41252706-41252725 | Msa0641250:five_prime_UTR | 30.0% | |
| GAATGAAATTTGGAAAGGTT+AGG | - | chr4_3:41252711-41252730 | Msa0641250:five_prime_UTR | 30.0% | |
| ! | TACTACATTAGCCTCATCAT+GGG | - | chr4_3:41251668-41251687 | Msa0641250:three_prime_UTR | 35.0% |
| ! | TCTTGTAACTTTTGGTCCTA+AGG | - | chr4_3:41251736-41251755 | Msa0641250:three_prime_UTR | 35.0% |
| GTTTCTTACATTATGACTGG+TGG | - | chr4_3:41251812-41251831 | Msa0641250:three_prime_UTR | 35.0% | |
| TGGTTTGAGCCATAGTATTA+AGG | + | chr4_3:41251877-41251896 | None:intergenic | 35.0% | |
| GTTAACAGCATTCTTAATGC+AGG | + | chr4_3:41251924-41251943 | None:intergenic | 35.0% | |
| AAGAATGCTGTTAACCAAAG+TGG | - | chr4_3:41251929-41251948 | Msa0641250:intron | 35.0% | |
| TAGTGTAACTGAAACCACTT+TGG | + | chr4_3:41251946-41251965 | None:intergenic | 35.0% | |
| ATGTTAACACCACATTTCCT+TGG | + | chr4_3:41251998-41252017 | None:intergenic | 35.0% | |
| TGTTAGTGTGTGAGAATAAG+AGG | - | chr4_3:41252491-41252510 | Msa0641250:CDS | 35.0% | |
| ! | TACTACATTAGCCTCATCAT+GGG | - | chr4_3:41251668-41251687 | Msa0641250:three_prime_UTR | 35.0% |
| ! | TCTTGTAACTTTTGGTCCTA+AGG | - | chr4_3:41251736-41251755 | Msa0641250:three_prime_UTR | 35.0% |
| GTTTCTTACATTATGACTGG+TGG | - | chr4_3:41251812-41251831 | Msa0641250:three_prime_UTR | 35.0% | |
| TGGTTTGAGCCATAGTATTA+AGG | + | chr4_3:41251877-41251896 | None:intergenic | 35.0% | |
| GTTAACAGCATTCTTAATGC+AGG | + | chr4_3:41251924-41251943 | None:intergenic | 35.0% | |
| AAGAATGCTGTTAACCAAAG+TGG | - | chr4_3:41251929-41251948 | Msa0641250:intron | 35.0% | |
| TAGTGTAACTGAAACCACTT+TGG | + | chr4_3:41251946-41251965 | None:intergenic | 35.0% | |
| ATGTTAACACCACATTTCCT+TGG | + | chr4_3:41251998-41252017 | None:intergenic | 35.0% | |
| TGTTAGTGTGTGAGAATAAG+AGG | - | chr4_3:41252491-41252510 | Msa0641250:CDS | 35.0% | |
| ! | CTACTACATTAGCCTCATCA+TGG | - | chr4_3:41251667-41251686 | Msa0641250:three_prime_UTR | 40.0% |
| TAGTTGAGTAACCCATGATG+AGG | + | chr4_3:41251682-41251701 | None:intergenic | 40.0% | |
| ! | CATCATGGGTTACTCAACTA+TGG | - | chr4_3:41251682-41251701 | Msa0641250:three_prime_UTR | 40.0% |
| GTTACTCAACTATGGCAACT+AGG | - | chr4_3:41251690-41251709 | Msa0641250:three_prime_UTR | 40.0% | |
| ! | CACAGTGTTGTAATGGAGTA+AGG | - | chr4_3:41251849-41251868 | Msa0641250:three_prime_UTR | 40.0% |
| AACAGCTCTACGATCATTTG+TGG | + | chr4_3:41251897-41251916 | None:intergenic | 40.0% | |
| TTAAACCTTAACCTTGCTGC+TGG | - | chr4_3:41251968-41251987 | Msa0641250:intron | 40.0% | |
| ACCTGTTACAGTCGGTATTA+GGG | + | chr4_3:41252036-41252055 | None:intergenic | 40.0% | |
| TACCTGTTACAGTCGGTATT+AGG | + | chr4_3:41252037-41252056 | None:intergenic | 40.0% | |
| TAAGTGGTACCTGTTACAGT+CGG | + | chr4_3:41252044-41252063 | None:intergenic | 40.0% | |
| TTGTATGTAGCCCTACAGAT+CGG | - | chr4_3:41252161-41252180 | Msa0641250:intron | 40.0% | |
| AGCTCAATCTCGATCATACA+TGG | + | chr4_3:41252208-41252227 | None:intergenic | 40.0% | |
| ! | TTTTTATGCAGTGTGCACTG+AGG | - | chr4_3:41252426-41252445 | Msa0641250:CDS | 40.0% |
| CACTTGAAGTTGCTTCTTTC+TGG | - | chr4_3:41252542-41252561 | Msa0641250:CDS | 40.0% | |
| ! | CTACTACATTAGCCTCATCA+TGG | - | chr4_3:41251667-41251686 | Msa0641250:three_prime_UTR | 40.0% |
| TAGTTGAGTAACCCATGATG+AGG | + | chr4_3:41251682-41251701 | None:intergenic | 40.0% | |
| ! | CATCATGGGTTACTCAACTA+TGG | - | chr4_3:41251682-41251701 | Msa0641250:three_prime_UTR | 40.0% |
| GTTACTCAACTATGGCAACT+AGG | - | chr4_3:41251690-41251709 | Msa0641250:three_prime_UTR | 40.0% | |
| ! | CACAGTGTTGTAATGGAGTA+AGG | - | chr4_3:41251849-41251868 | Msa0641250:three_prime_UTR | 40.0% |
| AACAGCTCTACGATCATTTG+TGG | + | chr4_3:41251897-41251916 | None:intergenic | 40.0% | |
| TTAAACCTTAACCTTGCTGC+TGG | - | chr4_3:41251968-41251987 | Msa0641250:intron | 40.0% | |
| ACCTGTTACAGTCGGTATTA+GGG | + | chr4_3:41252036-41252055 | None:intergenic | 40.0% | |
| TACCTGTTACAGTCGGTATT+AGG | + | chr4_3:41252037-41252056 | None:intergenic | 40.0% | |
| TAAGTGGTACCTGTTACAGT+CGG | + | chr4_3:41252044-41252063 | None:intergenic | 40.0% | |
| TTGTATGTAGCCCTACAGAT+CGG | - | chr4_3:41252161-41252180 | Msa0641250:intron | 40.0% | |
| AGCTCAATCTCGATCATACA+TGG | + | chr4_3:41252208-41252227 | None:intergenic | 40.0% | |
| ! | TTTTTATGCAGTGTGCACTG+AGG | - | chr4_3:41252426-41252445 | Msa0641250:CDS | 40.0% |
| CACTTGAAGTTGCTTCTTTC+TGG | - | chr4_3:41252542-41252561 | Msa0641250:CDS | 40.0% | |
| ! | GGCAACTAGGCTTGTTTGTT+TGG | - | chr4_3:41251703-41251722 | Msa0641250:three_prime_UTR | 45.0% |
| GGGTATAAGCTTGTCACAAC+TGG | + | chr4_3:41251788-41251807 | None:intergenic | 45.0% | |
| ACTCCATTACAACACTGTGC+AGG | + | chr4_3:41251848-41251867 | None:intergenic | 45.0% | |
| GTATTAGGGCTGATCTGGTA+AGG | + | chr4_3:41252022-41252041 | None:intergenic | 45.0% | |
| TGTATGTAGCCCTACAGATC+GGG | - | chr4_3:41252162-41252181 | Msa0641250:intron | 45.0% | |
| TGGTACGATCGAGAATGAGT+CGG | + | chr4_3:41252188-41252207 | None:intergenic | 45.0% | |
| TGTGTCTGTGTGTTAGTGTG+TGG | - | chr4_3:41252581-41252600 | Msa0641250:CDS | 45.0% | |
| ! | GGCAACTAGGCTTGTTTGTT+TGG | - | chr4_3:41251703-41251722 | Msa0641250:three_prime_UTR | 45.0% |
| GGGTATAAGCTTGTCACAAC+TGG | + | chr4_3:41251788-41251807 | None:intergenic | 45.0% | |
| ACTCCATTACAACACTGTGC+AGG | + | chr4_3:41251848-41251867 | None:intergenic | 45.0% | |
| GTATTAGGGCTGATCTGGTA+AGG | + | chr4_3:41252022-41252041 | None:intergenic | 45.0% | |
| TGTATGTAGCCCTACAGATC+GGG | - | chr4_3:41252162-41252181 | Msa0641250:intron | 45.0% | |
| TGGTACGATCGAGAATGAGT+CGG | + | chr4_3:41252188-41252207 | None:intergenic | 45.0% | |
| TGTGTCTGTGTGTTAGTGTG+TGG | - | chr4_3:41252581-41252600 | Msa0641250:CDS | 45.0% | |
| GTAACAGCTGCTTCAGCCTT+AGG | + | chr4_3:41251755-41251774 | None:intergenic | 50.0% | |
| GAAGCAGCTGTTACATCCTG+TGG | - | chr4_3:41251761-41251780 | Msa0641250:three_prime_UTR | 50.0% | |
| GTGCCTGCACAGTGTTGTAA+TGG | - | chr4_3:41251842-41251861 | Msa0641250:three_prime_UTR | 50.0% | |
| GAAGACCAGCAGCAAGGTTA+AGG | + | chr4_3:41251976-41251995 | None:intergenic | 50.0% | |
| !! | GCTGGTCTTCCAAGGAAATG+TGG | - | chr4_3:41251986-41252005 | Msa0641250:intron | 50.0% |
| AGTCGGTATTAGGGCTGATC+TGG | + | chr4_3:41252027-41252046 | None:intergenic | 50.0% | |
| ! | GCCCTAATACCGACTGTAAC+AGG | - | chr4_3:41252032-41252051 | Msa0641250:intron | 50.0% |
| GTAACAGCTGCTTCAGCCTT+AGG | + | chr4_3:41251755-41251774 | None:intergenic | 50.0% | |
| GAAGCAGCTGTTACATCCTG+TGG | - | chr4_3:41251761-41251780 | Msa0641250:three_prime_UTR | 50.0% | |
| GTGCCTGCACAGTGTTGTAA+TGG | - | chr4_3:41251842-41251861 | Msa0641250:three_prime_UTR | 50.0% | |
| GAAGACCAGCAGCAAGGTTA+AGG | + | chr4_3:41251976-41251995 | None:intergenic | 50.0% | |
| !! | GCTGGTCTTCCAAGGAAATG+TGG | - | chr4_3:41251986-41252005 | Msa0641250:intron | 50.0% |
| AGTCGGTATTAGGGCTGATC+TGG | + | chr4_3:41252027-41252046 | None:intergenic | 50.0% | |
| ! | GCCCTAATACCGACTGTAAC+AGG | - | chr4_3:41252032-41252051 | Msa0641250:intron | 50.0% |
| GCTTGTCACAACTGGACCAC+AGG | + | chr4_3:41251780-41251799 | None:intergenic | 55.0% | |
| !! | ACCTTGCTGCTGGTCTTCCA+AGG | - | chr4_3:41251978-41251997 | Msa0641250:intron | 55.0% |
| TCCTTGGAAGACCAGCAGCA+AGG | + | chr4_3:41251982-41252001 | None:intergenic | 55.0% | |
| ATGAGTCGGCCCGATCTGTA+GGG | + | chr4_3:41252174-41252193 | None:intergenic | 55.0% | |
| AATGAGTCGGCCCGATCTGT+AGG | + | chr4_3:41252175-41252194 | None:intergenic | 55.0% | |
| GCTTGTCACAACTGGACCAC+AGG | + | chr4_3:41251780-41251799 | None:intergenic | 55.0% | |
| !! | ACCTTGCTGCTGGTCTTCCA+AGG | - | chr4_3:41251978-41251997 | Msa0641250:intron | 55.0% |
| TCCTTGGAAGACCAGCAGCA+AGG | + | chr4_3:41251982-41252001 | None:intergenic | 55.0% | |
| ATGAGTCGGCCCGATCTGTA+GGG | + | chr4_3:41252174-41252193 | None:intergenic | 55.0% | |
| AATGAGTCGGCCCGATCTGT+AGG | + | chr4_3:41252175-41252194 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 41251630 | 41252748 | 41251630 | ID=Msa0641250;Name=Msa0641250 |
| chr4_3 | mRNA | 41251630 | 41252748 | 41251630 | ID=Msa0641250-mRNA-1;Parent=Msa0641250;Name=Msa0641250-mRNA-1;_AED=0.29;_eAED=0.29;_QI=56|1|1|1|1|1|2|302|125 |
| chr4_3 | exon | 41251630 | 41251941 | 41251630 | ID=Msa0641250-mRNA-1:exon:9282;Parent=Msa0641250-mRNA-1 |
| chr4_3 | exon | 41252325 | 41252748 | 41252325 | ID=Msa0641250-mRNA-1:exon:9281;Parent=Msa0641250-mRNA-1 |
| chr4_3 | five_prime_UTR | 41252693 | 41252748 | 41252693 | ID=Msa0641250-mRNA-1:five_prime_utr;Parent=Msa0641250-mRNA-1 |
| chr4_3 | CDS | 41252325 | 41252692 | 41252325 | ID=Msa0641250-mRNA-1:cds;Parent=Msa0641250-mRNA-1 |
| chr4_3 | CDS | 41251932 | 41251941 | 41251932 | ID=Msa0641250-mRNA-1:cds;Parent=Msa0641250-mRNA-1 |
| chr4_3 | three_prime_UTR | 41251630 | 41251931 | 41251630 | ID=Msa0641250-mRNA-1:three_prime_utr;Parent=Msa0641250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
