Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0567620 | XP_013446817.1 | 92.593 | 486 | 13 | 2 | 1 | 466 | 2 | 484 | 0.0 | 901 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0567620 | A0A072TTK7 | 92.593 | 486 | 13 | 2 | 1 | 466 | 2 | 484 | 0.0 | 901 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005690 | Msa0567620 | 0.805023 | 1.630958e-49 | -8.615850e-47 |
| Msa0147800 | Msa0567620 | 0.820983 | 5.139883e-53 | -8.615850e-47 |
| Msa0410960 | Msa0567620 | 0.807923 | 3.986570e-50 | -8.615850e-47 |
| Msa0315010 | Msa0567620 | 0.801903 | 7.229088e-49 | -8.615850e-47 |
| Msa0348410 | Msa0567620 | 0.819972 | 8.771172e-53 | -8.615850e-47 |
| Msa0503620 | Msa0567620 | 0.816031 | 6.820581e-52 | -8.615850e-47 |
| Msa0565530 | Msa0567620 | 0.814167 | 1.768816e-51 | -8.615850e-47 |
| Msa0567620 | Msa0568120 | 0.814414 | 1.559462e-51 | -8.615850e-47 |
| Msa0567620 | Msa0572820 | 0.803341 | 3.650370e-49 | -8.615850e-47 |
| Msa0567620 | Msa0668000 | 0.801232 | 9.920332e-49 | -8.615850e-47 |
| Msa0567620 | Msa0849130 | 0.803452 | 3.462657e-49 | -8.615850e-47 |
| Msa0567620 | Msa0883690 | 0.808061 | 3.727157e-50 | -8.615850e-47 |
| Msa0567620 | Msa0964570 | 0.813910 | 2.015071e-51 | -8.615850e-47 |
| Msa0567620 | Msa1009170 | 0.828629 | 8.083963e-55 | -8.615850e-47 |
| Msa0567620 | Msa1009220 | 0.826197 | 3.096043e-54 | -8.615850e-47 |
| Msa0567620 | Msa1045860 | 0.804316 | 2.290021e-49 | -8.615850e-47 |
| Msa0567620 | Msa1045950 | 0.806868 | 6.674168e-50 | -8.615850e-47 |
| Msa0567620 | Msa1072640 | 0.801106 | 1.053021e-48 | -8.615850e-47 |
| Msa0567620 | Msa1098340 | 0.820143 | 8.014912e-53 | -8.615850e-47 |
| Msa0567620 | Msa1098350 | 0.817085 | 3.959439e-52 | -8.615850e-47 |
| Msa0567620 | Msa1138490 | 0.808800 | 2.591374e-50 | -8.615850e-47 |
| Msa0567620 | Msa1279320 | 0.804953 | 1.686113e-49 | -8.615850e-47 |
| Msa0567620 | Msa1366700 | 0.808239 | 3.414434e-50 | -8.615850e-47 |
| Msa0567620 | Msa1371060 | 0.800116 | 1.676156e-48 | -8.615850e-47 |
| Msa0567620 | Msa1422150 | 0.800869 | 1.177187e-48 | -8.615850e-47 |
| Msa0567620 | Msa1431240 | 0.803669 | 3.121311e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0567620 | MtrunA17_Chr8g0382321 | 92.593 | 486 | 13 | 2 | 1 | 466 | 2 | 484 | 0.0 | 901 |
| Msa0567620 | MtrunA17_Chr8g0382331 | 76.907 | 485 | 86 | 4 | 1 | 463 | 1 | 481 | 0.0 | 741 |
| Msa0567620 | MtrunA17_Chr8g0382381 | 71.068 | 515 | 98 | 4 | 1 | 466 | 2 | 514 | 0.0 | 724 |
| Msa0567620 | MtrunA17_Chr5g0425781 | 66.105 | 475 | 136 | 4 | 1 | 451 | 1 | 474 | 0.0 | 635 |
| Msa0567620 | MtrunA17_Chr5g0403601 | 39.309 | 463 | 247 | 3 | 5 | 439 | 38 | 494 | 1.91e-97 | 301 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0567620 | AT5G10190.1 | 65.092 | 487 | 145 | 5 | 1 | 466 | 1 | 483 | 0.0 | 631 |
| Msa0567620 | AT1G78130.1 | 64.742 | 485 | 143 | 3 | 1 | 458 | 1 | 484 | 0.0 | 615 |
| Msa0567620 | AT5G10190.3 | 63.687 | 358 | 125 | 4 | 110 | 466 | 1 | 354 | 1.01e-160 | 459 |
| Msa0567620 | AT5G10190.2 | 64.553 | 347 | 100 | 3 | 1 | 327 | 1 | 344 | 1.04e-151 | 436 |
| Msa0567620 | AT4G36790.1 | 40.652 | 460 | 235 | 6 | 5 | 439 | 42 | 488 | 1.12e-110 | 336 |
| Msa0567620 | AT2G18590.1 | 35.637 | 463 | 254 | 6 | 12 | 439 | 19 | 472 | 4.30e-87 | 275 |
Find 101 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTATTTGGAGGATGGTTT+GGG | 0.176197 | 4_1:-68906371 | Msa0567620:CDS |
| AATTCATTTGGTGGTCTATT+TGG | 0.184781 | 4_1:-68906384 | Msa0567620:CDS |
| GGGACTATTTCTGCAAATAT+TGG | 0.190332 | 4_1:+68906156 | None:intergenic |
| ATCTTTCATTTCAGAATAAA+AGG | 0.221195 | 4_1:+68906581 | None:intergenic |
| GGTAAATTTAGCAGGTATTA+TGG | 0.231740 | 4_1:-68908148 | Msa0567620:CDS |
| ATGGTACAACAGCAATTATT+TGG | 0.249179 | 4_1:-68906425 | Msa0567620:CDS |
| ACATCAATCTTTGGTATATC+TGG | 0.252770 | 4_1:-68906735 | Msa0567620:CDS |
| TGTCTCCTCCACCTTCTTGC+AGG | 0.267945 | 4_1:-68907911 | Msa0567620:intron |
| ACAGAATTTGAAGATCCTTT+TGG | 0.270812 | 4_1:+68906015 | None:intergenic |
| CAATTGTGGAGTCAGCAATT+AGG | 0.274160 | 4_1:+68906850 | None:intergenic |
| GGTCTATTTGGAGGATGGTT+TGG | 0.276131 | 4_1:-68906372 | Msa0567620:CDS |
| ATTGTAGCTCAAGGAGTATT+TGG | 0.288198 | 4_1:-68906510 | Msa0567620:CDS |
| AACATTATTCTTCCGGTGTT+TGG | 0.315148 | 4_1:+68906327 | None:intergenic |
| ACTCTTTGGTTAGAACTAAT+AGG | 0.318083 | 4_1:-68906456 | Msa0567620:CDS |
| AGCAACCGTGGTGTAGCTTT+TGG | 0.330743 | 4_1:-68906825 | Msa0567620:CDS |
| TAGTGTTATAGTTGGTATAT+TGG | 0.339062 | 4_1:-68906679 | Msa0567620:CDS |
| TTGTGCCAACATTATTCTTC+CGG | 0.340790 | 4_1:+68906320 | None:intergenic |
| TCAGAATAAAAGGACTTGTT+TGG | 0.342500 | 4_1:+68906591 | None:intergenic |
| TTTATAATTTCTAATTCATT+TGG | 0.347136 | 4_1:-68906396 | Msa0567620:CDS |
| TTTGGGTGGCTTCATCTAAC+AGG | 0.354682 | 4_1:-68906807 | Msa0567620:CDS |
| AATTGTGGAGTCAGCAATTA+GGG | 0.370621 | 4_1:+68906851 | None:intergenic |
| GGAAACCTTGGAAGCATCAT+TGG | 0.372474 | 4_1:-68906786 | Msa0567620:CDS |
| GAAGGTATATGCAATGTCTT+TGG | 0.374343 | 4_1:+68908273 | None:intergenic |
| CACGCCCTTCGTACATGGTT+TGG | 0.374886 | 4_1:-68906232 | Msa0567620:CDS |
| AAGTTTACTAATGTACTATT+GGG | 0.380827 | 4_1:+68905747 | None:intergenic |
| TGCATTAGTTGAATCAGAAA+TGG | 0.385550 | 4_1:-68905845 | Msa0567620:CDS |
| ATGAAGACACATACTGCAAT+TGG | 0.389599 | 4_1:+68905922 | None:intergenic |
| GACTGAGAGATGGGGTTGAC+TGG | 0.401168 | 4_1:+68908300 | None:intergenic |
| CTAGCCTCAACATCAATCTT+TGG | 0.405866 | 4_1:-68906744 | Msa0567620:CDS |
| CTTGCTCGCTCCTTGTCCCT+CGG | 0.415138 | 4_1:+68905874 | None:intergenic |
| ATAATTTCTAATTCATTTGG+TGG | 0.451585 | 4_1:-68906393 | Msa0567620:CDS |
| CCATCCACGCCCTTCGTACA+TGG | 0.454110 | 4_1:-68906237 | Msa0567620:CDS |
| AAGGGCGTGGATGGATCATT+AGG | 0.454956 | 4_1:+68906246 | None:intergenic |
| GCGAACGGCTATATATGCTT+TGG | 0.460484 | 4_1:-68906124 | Msa0567620:CDS |
| TTGCTCGCTCCTTGTCCCTC+GGG | 0.461664 | 4_1:+68905875 | None:intergenic |
| ATTGCATATACCTTCACTCT+TGG | 0.463910 | 4_1:-68908265 | Msa0567620:five_prime_UTR |
| TCATTTGGTGGTCTATTTGG+AGG | 0.472636 | 4_1:-68906381 | Msa0567620:CDS |
| AACAACAAAATTGCTGCTAA+AGG | 0.476676 | 4_1:+68906276 | None:intergenic |
| TGAGCTAAAACGCCAACAAT+TGG | 0.477065 | 4_1:+68906063 | None:intergenic |
| GCTACAATTATCTGAAATGA+TGG | 0.478740 | 4_1:+68906525 | None:intergenic |
| CCATGTACGAAGGGCGTGGA+TGG | 0.478903 | 4_1:+68906237 | None:intergenic |
| TTGGTGGTCTATTTGGAGGA+TGG | 0.479982 | 4_1:-68906377 | Msa0567620:CDS |
| GGACAAGGAGCGAGCAAGAA+TGG | 0.482854 | 4_1:-68905869 | Msa0567620:CDS |
| GCATTGATTAGTGTTATAGT+TGG | 0.491293 | 4_1:-68906687 | Msa0567620:CDS |
| AACGCTGACCCAACTGCGTT+AGG | 0.491732 | 4_1:-68908069 | Msa0567620:CDS |
| TTTGGAGGAGACTGAGAGAT+GGG | 0.493605 | 4_1:+68908291 | None:intergenic |
| ATCAGAAATGGAACAACTAA+AGG | 0.493730 | 4_1:-68905833 | Msa0567620:CDS |
| GGTTATAAACCAATTCCAAA+AGG | 0.499646 | 4_1:-68906030 | Msa0567620:CDS |
| TCTCACTCTCTACCGATCCC+TGG | 0.500868 | 4_1:-68908043 | Msa0567620:CDS |
| TGAGAGAACCTAACGCAGTT+GGG | 0.510746 | 4_1:+68908061 | None:intergenic |
| CAAAATTGCTGCTAAAGGAA+TGG | 0.513952 | 4_1:+68906281 | None:intergenic |
| CCAGGAGTATACAAAGAGAT+TGG | 0.515968 | 4_1:-68908102 | Msa0567620:CDS |
| TCTATTTGGAGGATGGTTTG+GGG | 0.516912 | 4_1:-68906370 | Msa0567620:CDS |
| CCAATCTCTTTGTATACTCC+TGG | 0.519108 | 4_1:+68908102 | None:intergenic |
| TTAGTGCTGGTAAATTTAGC+AGG | 0.519467 | 4_1:-68908156 | Msa0567620:CDS |
| GGAGTATTTGGATCATTTCG+AGG | 0.525574 | 4_1:-68906498 | Msa0567620:CDS |
| CGTGCACATGTCATTGCTCT+TGG | 0.526129 | 4_1:-68907970 | Msa0567620:CDS |
| CAATCTTTGGTATATCTGGT+TGG | 0.529034 | 4_1:-68906731 | Msa0567620:CDS |
| GAGAACCAATGATGCTTCCA+AGG | 0.539889 | 4_1:+68906781 | None:intergenic |
| GCTAAAACGCCAACAATTGG+TGG | 0.542705 | 4_1:+68906066 | None:intergenic |
| TGTTCTGTGTTTCAGCGTTG+AGG | 0.546683 | 4_1:+68908240 | None:intergenic |
| GTGAGAGAACCTAACGCAGT+TGG | 0.547909 | 4_1:+68908060 | None:intergenic |
| GGTAACAGAATGCTTGAACC+AGG | 0.550482 | 4_1:+68908025 | None:intergenic |
| TATACCAAAGATTGATGTTG+AGG | 0.552826 | 4_1:+68906740 | None:intergenic |
| TTTCAGATAATTGTAGCTCA+AGG | 0.553580 | 4_1:-68906519 | Msa0567620:CDS |
| AATATTGGATCATTAGTTGC+TGG | 0.560697 | 4_1:+68906171 | None:intergenic |
| GCTGATGAGTCATTGCTACC+AGG | 0.561208 | 4_1:-68908120 | Msa0567620:CDS |
| AGAGACAGTAACATTAGTGC+TGG | 0.564326 | 4_1:-68908169 | Msa0567620:CDS |
| ACCACGGTTGCTATCAATTG+TGG | 0.566692 | 4_1:+68906836 | None:intergenic |
| CTTCATCTAACAGGAAACCT+TGG | 0.567615 | 4_1:-68906798 | Msa0567620:CDS |
| TTATGAAACTCATGATAATG+AGG | 0.568900 | 4_1:-68905785 | Msa0567620:CDS |
| GGTATATGCAATGTCTTTGG+AGG | 0.572696 | 4_1:+68908276 | None:intergenic |
| ATGTTGGCACAAATAAGTGC+TGG | 0.574971 | 4_1:-68906309 | Msa0567620:CDS |
| AAATGCGGCATCACTTGCTA+AGG | 0.575912 | 4_1:-68905968 | Msa0567620:CDS |
| GAGTATTTGGATCATTTCGA+GGG | 0.578224 | 4_1:-68906497 | Msa0567620:CDS |
| CTTTGGAGGAGACTGAGAGA+TGG | 0.578644 | 4_1:+68908290 | None:intergenic |
| GATAACCTGCAAGAAGGTGG+AGG | 0.588675 | 4_1:+68907906 | None:intergenic |
| GTAACAGAATGCTTGAACCA+GGG | 0.588995 | 4_1:+68908026 | None:intergenic |
| CAAACCATGTACGAAGGGCG+TGG | 0.593148 | 4_1:+68906233 | None:intergenic |
| CACGATTGTGTCGTGTGGCA+AGG | 0.598295 | 4_1:+68907989 | None:intergenic |
| AGAAATGGAACAACTAAAGG+TGG | 0.599904 | 4_1:-68905830 | Msa0567620:CDS |
| GGTGATAACCTGCAAGAAGG+TGG | 0.609934 | 4_1:+68907903 | None:intergenic |
| AGAATGCTTGAACCAGGGAT+CGG | 0.613048 | 4_1:+68908031 | None:intergenic |
| AAACACCGGAAGAATAATGT+TGG | 0.617470 | 4_1:-68906325 | Msa0567620:CDS |
| AGAGGTGATAACCTGCAAGA+AGG | 0.620653 | 4_1:+68907900 | None:intergenic |
| TTTCACATACCCGAGGGACA+AGG | 0.623199 | 4_1:-68905884 | Msa0567620:CDS |
| CGTTGAGGATCCAAGAGTGA+AGG | 0.623969 | 4_1:+68908255 | None:intergenic |
| TTCTCTATTTCACATACCCG+AGG | 0.625461 | 4_1:-68905891 | Msa0567620:CDS |
| TGAAACTGATAGAGAAAATG+CGG | 0.626937 | 4_1:-68905983 | Msa0567620:CDS |
| GTGGCAAGGTAAGCAGCAAG+AGG | 0.631198 | 4_1:+68908003 | None:intergenic |
| AAAACCAAACCATGTACGAA+GGG | 0.647921 | 4_1:+68906228 | None:intergenic |
| TCTCTATTTCACATACCCGA+GGG | 0.649176 | 4_1:-68905890 | Msa0567620:CDS |
| TGGCAAGGTAAGCAGCAAGA+GGG | 0.653848 | 4_1:+68908004 | None:intergenic |
| TAAAACCAAACCATGTACGA+AGG | 0.657037 | 4_1:+68906227 | None:intergenic |
| TCTCAACGGTTACCAAACAC+CGG | 0.659434 | 4_1:-68906339 | Msa0567620:CDS |
| TTGGAGGAGACTGAGAGATG+GGG | 0.662890 | 4_1:+68908292 | None:intergenic |
| GAACTAATAGGCTTCTCACA+TGG | 0.667993 | 4_1:-68906444 | Msa0567620:CDS |
| CTAAAGGTGGAACATGACAA+AGG | 0.668098 | 4_1:-68905817 | Msa0567620:CDS |
| TCCACAATTGATAGCAACCG+TGG | 0.681448 | 4_1:-68906837 | Msa0567620:CDS |
| ATGTGCACGATTGTGTCGTG+TGG | 0.695146 | 4_1:+68907984 | None:intergenic |
| GCCACCCAAAAGCTACACCA+CGG | 0.722794 | 4_1:+68906820 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAATAAAATTAATTTA+TGG | + | chr4_1:68906625-68906644 | None:intergenic | 0.0% |
| !! | TTTATAATTTCTAATTCATT+TGG | - | chr4_1:68907669-68907688 | Msa0567620:intron | 10.0% |
| !! | ACATAAAAACAATGAATATA+TGG | - | chr4_1:68906676-68906695 | Msa0567620:CDS | 15.0% |
| !!! | ACTTTAATCTTCTTATATTT+TGG | + | chr4_1:68906719-68906738 | None:intergenic | 15.0% |
| !!! | TTTTTTTTATATTAACCCTT+CGG | + | chr4_1:68906893-68906912 | None:intergenic | 15.0% |
| !!! | CTTGTTTATTATGATTGTTT+TGG | - | chr4_1:68906207-68906226 | Msa0567620:CDS | 20.0% |
| !! | AATAAAATACGAGTTGTTAA+GGG | + | chr4_1:68906449-68906468 | None:intergenic | 20.0% |
| !! | AAATAAAATACGAGTTGTTA+AGG | + | chr4_1:68906450-68906469 | None:intergenic | 20.0% |
| !! | TATAAGAAGATTAAAGTTAC+TGG | - | chr4_1:68906722-68906741 | Msa0567620:CDS | 20.0% |
| !! | ACATGTACTTATTGTATAAT+AGG | - | chr4_1:68907131-68907150 | Msa0567620:intron | 20.0% |
| !! | ATCTTTCATTTCAGAATAAA+AGG | + | chr4_1:68907487-68907506 | None:intergenic | 20.0% |
| !! | ATAATTTCTAATTCATTTGG+TGG | - | chr4_1:68907672-68907691 | Msa0567620:intron | 20.0% |
| ! | CTATGAAAAATTGAAAAGAG+AGG | + | chr4_1:68906186-68906205 | None:intergenic | 25.0% |
| !! | CTCTCTTTTCAATTTTTCAT+AGG | - | chr4_1:68906184-68906203 | Msa0567620:CDS | 25.0% |
| !! | ATTCTAGTACTTTTCTACAA+CGG | - | chr4_1:68906400-68906419 | Msa0567620:CDS | 25.0% |
| ! | TAGAAATGATCTAACTGTTA+AGG | + | chr4_1:68906532-68906551 | None:intergenic | 25.0% |
| !!! | ATTGTTTTTATGTACTCAAG+GGG | + | chr4_1:68906669-68906688 | None:intergenic | 25.0% |
| !!! | CATTGTTTTTATGTACTCAA+GGG | + | chr4_1:68906670-68906689 | None:intergenic | 25.0% |
| !!! | TCATTGTTTTTATGTACTCA+AGG | + | chr4_1:68906671-68906690 | None:intergenic | 25.0% |
| !! | ATGCATGTGAGAATAATTTT+TGG | - | chr4_1:68906808-68906827 | Msa0567620:CDS | 25.0% |
| !!! | GTCAGATTTTACTTATTTCT+CGG | - | chr4_1:68906830-68906849 | Msa0567620:CDS | 25.0% |
| !!! | ATACATTTTGAAAAGTAGTC+TGG | - | chr4_1:68906961-68906980 | Msa0567620:intron | 25.0% |
| ! | TAAGAAACATTTGATATGCA+AGG | + | chr4_1:68907074-68907093 | None:intergenic | 25.0% |
| ! | TATAGTAAGTACAACTCATA+TGG | + | chr4_1:68907106-68907125 | None:intergenic | 25.0% |
| !! | TAGTGTTATAGTTGGTATAT+TGG | - | chr4_1:68907386-68907405 | Msa0567620:intron | 25.0% |
| !!! | GTAGTTATTTTGTTGTCTTT+TGG | + | chr4_1:68907441-68907460 | None:intergenic | 25.0% |
| !!! | GTTTATCATTTTTCACTCTT+TGG | - | chr4_1:68907595-68907614 | Msa0567620:intron | 25.0% |
| !! | TTATGAAACTCATGATAATG+AGG | - | chr4_1:68908280-68908299 | Msa0567620:five_prime_UTR | 25.0% |
| GGTAAATTTAGCAGGTATTA+TGG | - | chr4_1:68905917-68905936 | Msa0567620:CDS | 30.0% | |
| !!! | TGTTTTGGTTATGCACATAA+TGG | - | chr4_1:68906222-68906241 | Msa0567620:CDS | 30.0% |
| !!! | GTTTTGGTTATGCACATAAT+GGG | - | chr4_1:68906223-68906242 | Msa0567620:CDS | 30.0% |
| ATATTAACCCTTCGGTTATT+AGG | + | chr4_1:68906885-68906904 | None:intergenic | 30.0% | |
| !! | TGCTCAGAAATAAAGTATTG+TGG | - | chr4_1:68907037-68907056 | Msa0567620:intron | 30.0% |
| !! | GCTCAGAAATAAAGTATTGT+GGG | - | chr4_1:68907038-68907057 | Msa0567620:intron | 30.0% |
| AGTACAACTCATATGGTATA+AGG | + | chr4_1:68907099-68907118 | None:intergenic | 30.0% | |
| CAATTTCAAGAGCTTTCAAT+GGG | - | chr4_1:68907157-68907176 | Msa0567620:intron | 30.0% | |
| TATACCAAAGATTGATGTTG+AGG | + | chr4_1:68907328-68907347 | None:intergenic | 30.0% | |
| ACATCAATCTTTGGTATATC+TGG | - | chr4_1:68907330-68907349 | Msa0567620:intron | 30.0% | |
| !! | GCATTGATTAGTGTTATAGT+TGG | - | chr4_1:68907378-68907397 | Msa0567620:intron | 30.0% |
| ! | TCAGAATAAAAGGACTTGTT+TGG | + | chr4_1:68907477-68907496 | None:intergenic | 30.0% |
| ! | GCTACAATTATCTGAAATGA+TGG | + | chr4_1:68907543-68907562 | None:intergenic | 30.0% |
| TTTCAGATAATTGTAGCTCA+AGG | - | chr4_1:68907546-68907565 | Msa0567620:intron | 30.0% | |
| ACTCTTTGGTTAGAACTAAT+AGG | - | chr4_1:68907609-68907628 | Msa0567620:intron | 30.0% | |
| ATGGTACAACAGCAATTATT+TGG | - | chr4_1:68907640-68907659 | Msa0567620:intron | 30.0% | |
| ! | AATTCATTTGGTGGTCTATT+TGG | - | chr4_1:68907681-68907700 | Msa0567620:intron | 30.0% |
| !!! | TTGGGGATTTTTTATCTCAA+CGG | - | chr4_1:68907712-68907731 | Msa0567620:intron | 30.0% |
| AACAACAAAATTGCTGCTAA+AGG | + | chr4_1:68907792-68907811 | None:intergenic | 30.0% | |
| !!! | TGGTTTGGTTTTAGTCATTT+TGG | - | chr4_1:68907848-68907867 | Msa0567620:intron | 30.0% |
| !!! | GGTTTGGTTTTAGTCATTTT+GGG | - | chr4_1:68907849-68907868 | Msa0567620:intron | 30.0% |
| !!! | TTTTGGGATTAATCACTTTC+TGG | - | chr4_1:68907865-68907884 | Msa0567620:intron | 30.0% |
| AATATTGGATCATTAGTTGC+TGG | + | chr4_1:68907897-68907916 | None:intergenic | 30.0% | |
| !!! | GTTTTAGCTCAACATGTTTA+TGG | - | chr4_1:68908014-68908033 | Msa0567620:CDS | 30.0% |
| GGTTATAAACCAATTCCAAA+AGG | - | chr4_1:68908035-68908054 | Msa0567620:CDS | 30.0% | |
| !!! | TTTGAAGATCCTTTTGGAAT+TGG | + | chr4_1:68908047-68908066 | None:intergenic | 30.0% |
| ! | ACAGAATTTGAAGATCCTTT+TGG | + | chr4_1:68908053-68908072 | None:intergenic | 30.0% |
| TGAAACTGATAGAGAAAATG+CGG | - | chr4_1:68908082-68908101 | Msa0567620:CDS | 30.0% | |
| TGCATTAGTTGAATCAGAAA+TGG | - | chr4_1:68908220-68908239 | Msa0567620:five_prime_UTR | 30.0% | |
| ATCAGAAATGGAACAACTAA+AGG | - | chr4_1:68908232-68908251 | Msa0567620:five_prime_UTR | 30.0% | |
| ! | GAAGGTATATGCAATGTCTT+TGG | + | chr4_1:68905795-68905814 | None:intergenic | 35.0% |
| ATTGCATATACCTTCACTCT+TGG | - | chr4_1:68905800-68905819 | Msa0567620:CDS | 35.0% | |
| !! | TTAGTGCTGGTAAATTTAGC+AGG | - | chr4_1:68905909-68905928 | Msa0567620:CDS | 35.0% |
| ! | TTAAAGTTACTGGTCTCAAG+TGG | - | chr4_1:68906732-68906751 | Msa0567620:CDS | 35.0% |
| TTCTCACATGCATTGAACTT+GGG | + | chr4_1:68906801-68906820 | None:intergenic | 35.0% | |
| ATTCTCACATGCATTGAACT+TGG | + | chr4_1:68906802-68906821 | None:intergenic | 35.0% | |
| ! | CTTATTTCTCGGTCGAAATT+TGG | - | chr4_1:68906841-68906860 | Msa0567620:CDS | 35.0% |
| !!! | AGTCTGGTTTGCACTTTTTT+TGG | - | chr4_1:68906977-68906996 | Msa0567620:intron | 35.0% |
| GCAATTTCAAGAGCTTTCAA+TGG | - | chr4_1:68907156-68907175 | Msa0567620:intron | 35.0% | |
| AATTGTGGAGTCAGCAATTA+GGG | + | chr4_1:68907217-68907236 | None:intergenic | 35.0% | |
| CAATCTTTGGTATATCTGGT+TGG | - | chr4_1:68907334-68907353 | Msa0567620:intron | 35.0% | |
| ! | TTGGAGAATAGCTTTTCATC+TGG | - | chr4_1:68907353-68907372 | Msa0567620:intron | 35.0% |
| !! | TTGTTGTCTTTTGGAAAGTG+TGG | + | chr4_1:68907432-68907451 | None:intergenic | 35.0% |
| !! | ATTGTAGCTCAAGGAGTATT+TGG | - | chr4_1:68907555-68907574 | Msa0567620:intron | 35.0% |
| GAGTATTTGGATCATTTCGA+GGG | - | chr4_1:68907568-68907587 | Msa0567620:intron | 35.0% | |
| AACATTATTCTTCCGGTGTT+TGG | + | chr4_1:68907741-68907760 | None:intergenic | 35.0% | |
| AAACACCGGAAGAATAATGT+TGG | - | chr4_1:68907740-68907759 | Msa0567620:intron | 35.0% | |
| TTGTGCCAACATTATTCTTC+CGG | + | chr4_1:68907748-68907767 | None:intergenic | 35.0% | |
| CAAAATTGCTGCTAAAGGAA+TGG | + | chr4_1:68907787-68907806 | None:intergenic | 35.0% | |
| AAAACCAAACCATGTACGAA+GGG | + | chr4_1:68907840-68907859 | None:intergenic | 35.0% | |
| TAAAACCAAACCATGTACGA+AGG | + | chr4_1:68907841-68907860 | None:intergenic | 35.0% | |
| !! | GGGACTATTTCTGCAAATAT+TGG | + | chr4_1:68907912-68907931 | None:intergenic | 35.0% |
| !! | TCGATCTTTTGAGAGTATGT+TGG | - | chr4_1:68907965-68907984 | Msa0567620:CDS | 35.0% |
| ATGAAGACACATACTGCAAT+TGG | + | chr4_1:68908146-68908165 | None:intergenic | 35.0% | |
| AGAAATGGAACAACTAAAGG+TGG | - | chr4_1:68908235-68908254 | Msa0567620:five_prime_UTR | 35.0% | |
| GGTATATGCAATGTCTTTGG+AGG | + | chr4_1:68905792-68905811 | None:intergenic | 40.0% | |
| AGAGACAGTAACATTAGTGC+TGG | - | chr4_1:68905896-68905915 | Msa0567620:CDS | 40.0% | |
| CCAATCTCTTTGTATACTCC+TGG | + | chr4_1:68905966-68905985 | None:intergenic | 40.0% | |
| ! | CCAGGAGTATACAAAGAGAT+TGG | - | chr4_1:68905963-68905982 | Msa0567620:CDS | 40.0% |
| GTAACAGAATGCTTGAACCA+GGG | + | chr4_1:68906042-68906061 | None:intergenic | 40.0% | |
| !!! | TTGCTCTTGGTGCTTTTCTT+TGG | - | chr4_1:68906108-68906127 | Msa0567620:CDS | 40.0% |
| !!! | TGCTCTTGGTGCTTTTCTTT+GGG | - | chr4_1:68906109-68906128 | Msa0567620:CDS | 40.0% |
| ATGCATTGAACTTGGGGTTT+GGG | + | chr4_1:68906794-68906813 | None:intergenic | 40.0% | |
| TCTCACATGCATTGAACTTG+GGG | + | chr4_1:68906800-68906819 | None:intergenic | 40.0% | |
| CGGTCGAAATTTGGATTACT+AGG | - | chr4_1:68906850-68906869 | Msa0567620:CDS | 40.0% | |
| ! | TTGGATTCTAAAGACCCTAG+CGG | - | chr4_1:68906996-68907015 | Msa0567620:intron | 40.0% |
| TCAAGAGCTTTCAATGGGAT+TGG | - | chr4_1:68907162-68907181 | Msa0567620:intron | 40.0% | |
| CAATTGTGGAGTCAGCAATT+AGG | + | chr4_1:68907218-68907237 | None:intergenic | 40.0% | |
| CTTCATCTAACAGGAAACCT+TGG | - | chr4_1:68907267-68907286 | Msa0567620:intron | 40.0% | |
| CTAGCCTCAACATCAATCTT+TGG | - | chr4_1:68907321-68907340 | Msa0567620:intron | 40.0% | |
| ! | GAGAATAGCTTTTCATCTGG+TGG | - | chr4_1:68907356-68907375 | Msa0567620:intron | 40.0% |
| ! | GGAGTATTTGGATCATTTCG+AGG | - | chr4_1:68907567-68907586 | Msa0567620:intron | 40.0% |
| GAACTAATAGGCTTCTCACA+TGG | - | chr4_1:68907621-68907640 | Msa0567620:intron | 40.0% | |
| ! | TCATTTGGTGGTCTATTTGG+AGG | - | chr4_1:68907684-68907703 | Msa0567620:intron | 40.0% |
| GTCTATTTGGAGGATGGTTT+GGG | - | chr4_1:68907694-68907713 | Msa0567620:intron | 40.0% | |
| TCTATTTGGAGGATGGTTTG+GGG | - | chr4_1:68907695-68907714 | Msa0567620:intron | 40.0% | |
| ATGTTGGCACAAATAAGTGC+TGG | - | chr4_1:68907756-68907775 | Msa0567620:intron | 40.0% | |
| ! | TCTTTTGCTCCACCAATTGT+TGG | - | chr4_1:68907990-68908009 | Msa0567620:CDS | 40.0% |
| TGAGCTAAAACGCCAACAAT+TGG | + | chr4_1:68908005-68908024 | None:intergenic | 40.0% | |
| TTCTCTATTTCACATACCCG+AGG | - | chr4_1:68908174-68908193 | Msa0567620:CDS | 40.0% | |
| TCTCTATTTCACATACCCGA+GGG | - | chr4_1:68908175-68908194 | Msa0567620:CDS | 40.0% | |
| CTAAAGGTGGAACATGACAA+AGG | - | chr4_1:68908248-68908267 | Msa0567620:five_prime_UTR | 40.0% | |
| TTTGGAGGAGACTGAGAGAT+GGG | + | chr4_1:68905777-68905796 | None:intergenic | 45.0% | |
| TGTTCTGTGTTTCAGCGTTG+AGG | + | chr4_1:68905828-68905847 | None:intergenic | 45.0% | |
| TGAGAGAACCTAACGCAGTT+GGG | + | chr4_1:68906007-68906026 | None:intergenic | 45.0% | |
| AGAATGCTTGAACCAGGGAT+CGG | + | chr4_1:68906037-68906056 | None:intergenic | 45.0% | |
| GGTAACAGAATGCTTGAACC+AGG | + | chr4_1:68906043-68906062 | None:intergenic | 45.0% | |
| AGAGGTGATAACCTGCAAGA+AGG | + | chr4_1:68906168-68906187 | None:intergenic | 45.0% | |
| CATGCATTGAACTTGGGGTT+TGG | + | chr4_1:68906795-68906814 | None:intergenic | 45.0% | |
| CCTTCGGTTATTAGGTGAAG+GGG | + | chr4_1:68906877-68906896 | None:intergenic | 45.0% | |
| CCCTTCGGTTATTAGGTGAA+GGG | + | chr4_1:68906878-68906897 | None:intergenic | 45.0% | |
| CCCTTCACCTAATAACCGAA+GGG | - | chr4_1:68906875-68906894 | Msa0567620:intron | 45.0% | |
| ACCCTTCGGTTATTAGGTGA+AGG | + | chr4_1:68906879-68906898 | None:intergenic | 45.0% | |
| TGTGTGTAGTTTCACCGCTA+GGG | + | chr4_1:68907013-68907032 | None:intergenic | 45.0% | |
| ATGTGTGTAGTTTCACCGCT+AGG | + | chr4_1:68907014-68907033 | None:intergenic | 45.0% | |
| CTGGATTGCTGGAATCACAA+TGG | + | chr4_1:68907193-68907212 | None:intergenic | 45.0% | |
| ! | TCCACAATTGATAGCAACCG+TGG | - | chr4_1:68907228-68907247 | Msa0567620:intron | 45.0% |
| ACCACGGTTGCTATCAATTG+TGG | + | chr4_1:68907232-68907251 | None:intergenic | 45.0% | |
| TTTGGGTGGCTTCATCTAAC+AGG | - | chr4_1:68907258-68907277 | Msa0567620:intron | 45.0% | |
| !! | GGAAACCTTGGAAGCATCAT+TGG | - | chr4_1:68907279-68907298 | Msa0567620:intron | 45.0% |
| GAGAACCAATGATGCTTCCA+AGG | + | chr4_1:68907287-68907306 | None:intergenic | 45.0% | |
| ! | TTGGTGGTCTATTTGGAGGA+TGG | - | chr4_1:68907688-68907707 | Msa0567620:intron | 45.0% |
| GGTCTATTTGGAGGATGGTT+TGG | - | chr4_1:68907693-68907712 | Msa0567620:intron | 45.0% | |
| TCTCAACGGTTACCAAACAC+CGG | - | chr4_1:68907726-68907745 | Msa0567620:intron | 45.0% | |
| AGTCCCTGAAAAATCGCGAA+CGG | - | chr4_1:68907926-68907945 | Msa0567620:CDS | 45.0% | |
| ! | TAGCCGTTCGCGATTTTTCA+GGG | + | chr4_1:68907932-68907951 | None:intergenic | 45.0% |
| ! | ATAGCCGTTCGCGATTTTTC+AGG | + | chr4_1:68907933-68907952 | None:intergenic | 45.0% |
| GCGAACGGCTATATATGCTT+TGG | - | chr4_1:68907941-68907960 | Msa0567620:CDS | 45.0% | |
| GCTAAAACGCCAACAATTGG+TGG | + | chr4_1:68908002-68908021 | None:intergenic | 45.0% | |
| ! | AAATGCGGCATCACTTGCTA+AGG | - | chr4_1:68908097-68908116 | Msa0567620:CDS | 45.0% |
| !!! | AATTGATTAATTTTATTTTT+AGG | + | chr4_1:68906478-68906497 | None:intergenic | 5.0% |
| TTGGAGGAGACTGAGAGATG+GGG | + | chr4_1:68905776-68905795 | None:intergenic | 50.0% | |
| ! | CTTTGGAGGAGACTGAGAGA+TGG | + | chr4_1:68905778-68905797 | None:intergenic | 50.0% |
| CGTTGAGGATCCAAGAGTGA+AGG | + | chr4_1:68905813-68905832 | None:intergenic | 50.0% | |
| GCTGATGAGTCATTGCTACC+AGG | - | chr4_1:68905945-68905964 | Msa0567620:CDS | 50.0% | |
| GTGAGAGAACCTAACGCAGT+TGG | + | chr4_1:68906008-68906027 | None:intergenic | 50.0% | |
| TGGCAAGGTAAGCAGCAAGA+GGG | + | chr4_1:68906064-68906083 | None:intergenic | 50.0% | |
| ATGTGCACGATTGTGTCGTG+TGG | + | chr4_1:68906084-68906103 | None:intergenic | 50.0% | |
| CGTGCACATGTCATTGCTCT+TGG | - | chr4_1:68906095-68906114 | Msa0567620:CDS | 50.0% | |
| GATAACCTGCAAGAAGGTGG+AGG | + | chr4_1:68906162-68906181 | None:intergenic | 50.0% | |
| GGTGATAACCTGCAAGAAGG+TGG | + | chr4_1:68906165-68906184 | None:intergenic | 50.0% | |
| CCCCTTCACCTAATAACCGA+AGG | - | chr4_1:68906874-68906893 | Msa0567620:intron | 50.0% | |
| GCAATTAGGGACTGGATTGC+TGG | + | chr4_1:68907204-68907223 | None:intergenic | 50.0% | |
| TGGAGTCAGCAATTAGGGAC+TGG | + | chr4_1:68907212-68907231 | None:intergenic | 50.0% | |
| ! | AGCAACCGTGGTGTAGCTTT+TGG | - | chr4_1:68907240-68907259 | Msa0567620:intron | 50.0% |
| ! | GCAACCGTGGTGTAGCTTTT+GGG | - | chr4_1:68907241-68907260 | Msa0567620:intron | 50.0% |
| ! | AAGGGCGTGGATGGATCATT+AGG | + | chr4_1:68907822-68907841 | None:intergenic | 50.0% |
| TTTCACATACCCGAGGGACA+AGG | - | chr4_1:68908181-68908200 | Msa0567620:exon | 50.0% | |
| GACTGAGAGATGGGGTTGAC+TGG | + | chr4_1:68905768-68905787 | None:intergenic | 55.0% | |
| AACGCTGACCCAACTGCGTT+AGG | - | chr4_1:68905996-68906015 | Msa0567620:CDS | 55.0% | |
| TCTCACTCTCTACCGATCCC+TGG | - | chr4_1:68906022-68906041 | Msa0567620:CDS | 55.0% | |
| GTGGCAAGGTAAGCAGCAAG+AGG | + | chr4_1:68906065-68906084 | None:intergenic | 55.0% | |
| CACGATTGTGTCGTGTGGCA+AGG | + | chr4_1:68906079-68906098 | None:intergenic | 55.0% | |
| TGTCTCCTCCACCTTCTTGC+AGG | - | chr4_1:68906154-68906173 | Msa0567620:CDS | 55.0% | |
| ! | ACCGTGGTGTAGCTTTTGGG+TGG | - | chr4_1:68907244-68907263 | Msa0567620:intron | 55.0% |
| GCCACCCAAAAGCTACACCA+CGG | + | chr4_1:68907248-68907267 | None:intergenic | 55.0% | |
| CAAACCATGTACGAAGGGCG+TGG | + | chr4_1:68907835-68907854 | None:intergenic | 55.0% | |
| CACGCCCTTCGTACATGGTT+TGG | - | chr4_1:68907833-68907852 | Msa0567620:intron | 55.0% | |
| GGACAAGGAGCGAGCAAGAA+TGG | - | chr4_1:68908196-68908215 | Msa0567620:exon | 55.0% | |
| ! | CCATGTACGAAGGGCGTGGA+TGG | + | chr4_1:68907831-68907850 | None:intergenic | 60.0% |
| CCATCCACGCCCTTCGTACA+TGG | - | chr4_1:68907828-68907847 | Msa0567620:intron | 60.0% | |
| TTGCTCGCTCCTTGTCCCTC+GGG | + | chr4_1:68908193-68908212 | None:intergenic | 60.0% | |
| CTTGCTCGCTCCTTGTCCCT+CGG | + | chr4_1:68908194-68908213 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 68905762 | 68908325 | 68905762 | ID=Msa0567620;Name=Msa0567620 |
| chr4_1 | mRNA | 68905762 | 68908325 | 68905762 | ID=Msa0567620-mRNA-1;Parent=Msa0567620;Name=Msa0567620-mRNA-1;_AED=0.36;_eAED=0.36;_QI=126|0|0.5|1|1|1|2|0|466 |
| chr4_1 | exon | 68905762 | 68906874 | 68905762 | ID=Msa0567620-mRNA-1:exon:22933;Parent=Msa0567620-mRNA-1 |
| chr4_1 | exon | 68907912 | 68908325 | 68907912 | ID=Msa0567620-mRNA-1:exon:22932;Parent=Msa0567620-mRNA-1 |
| chr4_1 | five_prime_UTR | 68908200 | 68908325 | 68908200 | ID=Msa0567620-mRNA-1:five_prime_utr;Parent=Msa0567620-mRNA-1 |
| chr4_1 | CDS | 68907912 | 68908199 | 68907912 | ID=Msa0567620-mRNA-1:cds;Parent=Msa0567620-mRNA-1 |
| chr4_1 | CDS | 68905762 | 68906874 | 68905762 | ID=Msa0567620-mRNA-1:cds;Parent=Msa0567620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
