AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0964570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0964570 MtrunA17_Chr6g0485031 96.828 536 7 1 1 526 1 536 0.0 1063
Msa0964570 MtrunA17_Chr1g0184451 39.286 252 146 5 173 419 18 267 1.03e-53 182
Msa0964570 MtrunA17_Chr1g0153571 40.000 180 103 3 173 347 55 234 3.07e-27 112
Msa0964570 MtrunA17_Chr1g0151421 40.000 180 103 3 173 347 56 235 3.31e-27 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0964570 AT3G24430.1 77.947 526 103 2 5 525 7 524 0.0 831
Msa0964570 AT4G19540.1 38.996 259 151 5 173 426 39 295 2.37e-52 181
Msa0964570 AT5G50960.1 41.667 180 100 4 173 347 55 234 4.24e-33 129

Find 133 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTATACTTTGGCTGATA+TGG 0.137501 6_3:+91345018 Msa0964570:CDS
ATGCGTGGCCCTATGGTTTC+TGG 0.187228 6_3:+91345295 Msa0964570:CDS
CAACACATACTCCTAGATTT+TGG 0.188730 6_3:-91346783 None:intergenic
ATATTTGATGCTGATATTTA+TGG 0.193240 6_3:+91345055 Msa0964570:CDS
AATTCATTTAATTGTGTTTA+GGG 0.227190 6_3:+91348514 Msa0964570:three_prime_UTR
GGAGTCAAGTTGGTTTCTTT+TGG 0.256137 6_3:+91345247 Msa0964570:CDS
TAATTCATTTAATTGTGTTT+AGG 0.266643 6_3:+91348513 Msa0964570:three_prime_UTR
AGACATACAGTCGGTCTAAT+AGG 0.270596 6_3:-91346567 None:intergenic
ATCATAAAACATTCTCCTTT+TGG 0.275926 6_3:+91348472 Msa0964570:three_prime_UTR
CCCATTGGCCGAATTTCTTC+AGG 0.291086 6_3:-91347542 None:intergenic
TATCCATTTGGTAGAGGTTC+AGG 0.312034 6_3:+91346378 Msa0964570:CDS
ACAATTACAGCAGCAGTTAA+TGG 0.320244 6_3:-91346097 None:intergenic
TTGTCACAGCTATCTGCTTC+TGG 0.339419 6_3:+91346703 Msa0964570:intron
TAAGGGAGCAAAGTTCATTA+TGG 0.344948 6_3:+91342615 Msa0964570:CDS
TCTTCAGGTTCAATGTAATC+AGG 0.349940 6_3:-91347527 None:intergenic
ACAATATCGGTTCCAAAGTC+TGG 0.356813 6_3:-91343990 None:intergenic
GCTAGAGCTGCTTCTGTTGA+AGG 0.357102 6_3:+91342680 Msa0964570:CDS
TGGTCCAAGCTTACCAACTA+TGG 0.359534 6_3:+91345075 Msa0964570:CDS
AGTAAACCTTGCTTATACTT+TGG 0.360089 6_3:+91345009 Msa0964570:CDS
GCTTATACTTTGGCTGATAT+GGG 0.360827 6_3:+91345019 Msa0964570:CDS
TTGCAGGTTGTTCAGCAGTT+TGG 0.361065 6_3:+91346522 Msa0964570:intron
TCATTCCGTCTCACTGTTGC+AGG 0.363783 6_3:-91347359 None:intergenic
TGCAATTATGCGTGGCCCTA+TGG 0.374562 6_3:+91345288 Msa0964570:CDS
TATGGACTTCTTATAATAAG+AGG 0.376124 6_3:+91342633 Msa0964570:CDS
CAATTACAGCAGCAGTTAAT+GGG 0.383745 6_3:-91346096 None:intergenic
TTGAATCGCAGGTGTCGTTT+CGG 0.394247 6_3:+91344134 Msa0964570:intron
ATTGTCTGAAGTTGATCATA+AGG 0.398569 6_3:-91348156 None:intergenic
ATCGACATGCCTCCGGGAAC+AGG 0.402030 6_3:+91345802 Msa0964570:CDS
TGAGGATCAGCCACCACTTC+AGG 0.402057 6_3:-91346739 None:intergenic
AAGAATTCTTCATCTGAATC+TGG 0.406817 6_3:-91347329 None:intergenic
CGAATATCAATTACTCTCTT+CGG 0.410410 6_3:+91348547 Msa0964570:three_prime_UTR
CAGATCATTGATCCAGACTT+TGG 0.418548 6_3:+91343978 Msa0964570:CDS
AGTTGAATGTCTCCTGTTCC+CGG 0.419810 6_3:-91345814 None:intergenic
CAACCAGTAGAAGCATATAT+TGG 0.419968 6_3:+91348293 Msa0964570:three_prime_UTR
AAATGAATTACTAATAGCTT+GGG 0.421615 6_3:-91348500 None:intergenic
ACATTGAACCTGAAGAAATT+CGG 0.423333 6_3:+91347534 Msa0964570:CDS
AGGTGGTGGCAGTGCTCCCT+TGG 0.423999 6_3:+91344460 Msa0964570:CDS
GATATAAATGCTTTACTCAA+TGG 0.425466 6_3:-91348376 None:intergenic
GAGGAGATTCACCTTGCAAC+TGG 0.430371 6_3:-91344586 None:intergenic
TTCAATGTAATCAGGAATAT+CGG 0.430600 6_3:-91347519 None:intergenic
CATCATTCCAACCGAGTACA+TGG 0.433913 6_3:+91345225 Msa0964570:CDS
TAAATGAATTACTAATAGCT+TGG 0.437320 6_3:-91348501 None:intergenic
GGAAATTCCTCGGTATCAAC+TGG 0.438796 6_3:+91343921 Msa0964570:CDS
TCTGTGAATGTAAAGTGCTC+AGG 0.440812 6_3:+91342584 Msa0964570:CDS
TCCAAGATATTCCAAAATCT+AGG 0.444913 6_3:+91346772 Msa0964570:CDS
CCTTGTTATCGACATGCCTC+CGG 0.447834 6_3:+91345795 Msa0964570:CDS
CTATCTGCTTCTGGAGATAG+TGG 0.448528 6_3:+91346712 Msa0964570:CDS
GACATACAGTCGGTCTAATA+GGG 0.449813 6_3:-91346566 None:intergenic
TGGTAGAGGTTCAGGATCTC+AGG 0.450907 6_3:+91346386 Msa0964570:CDS
CACATGACAGTTTGAGCAGC+AGG 0.456164 6_3:+91344431 Msa0964570:intron
GGAAAATCGAATATTAGAAA+TGG 0.456568 6_3:+91345105 Msa0964570:CDS
CAAAATTTGCAGGGTGGTGT+AGG 0.460725 6_3:+91344971 Msa0964570:intron
CATGTACTCGGTTGGAATGA+TGG 0.466328 6_3:-91345224 None:intergenic
AAATCCACAAGTAACAATAT+CGG 0.468286 6_3:-91344003 None:intergenic
CATTCAACTCACTTTATGCC+AGG 0.470185 6_3:+91345828 Msa0964570:CDS
TCGATGTTGCAAAAGGAGTT+CGG 0.470587 6_3:+91346146 Msa0964570:CDS
CCTGAAGAAATTCGGCCAAT+GGG 0.471972 6_3:+91347542 Msa0964570:CDS
GAGACCATAGTTGGTAAGCT+TGG 0.482760 6_3:-91345079 None:intergenic
CTTGTTATCGACATGCCTCC+GGG 0.484187 6_3:+91345796 Msa0964570:CDS
GGAAGTTGTTCTGCAAATAA+CGG 0.484639 6_3:-91344525 None:intergenic
GAAATTGTCTGTAGACCTGC+TGG 0.493417 6_3:-91344546 None:intergenic
GTTTGAGCAGCAGGCAAATG+AGG 0.503635 6_3:+91344440 Msa0964570:intron
TCATTTACCACGTCCTTGAT+CGG 0.507285 6_3:-91344181 None:intergenic
CAGACAATGGAACGGTTAGT+TGG 0.507492 6_3:+91348171 Msa0964570:CDS
CGAGTACATGGGAGTCAAGT+TGG 0.507557 6_3:+91345237 Msa0964570:CDS
GATCCTGAACCTCTACCAAA+TGG 0.508732 6_3:-91346381 None:intergenic
ATGGCCTGATGGGTTTAGTC+AGG 0.515668 6_3:+91347586 Msa0964570:CDS
TTGCAGATTGATAAAGCTCT+AGG 0.516696 6_3:+91344035 Msa0964570:CDS
ATCAGGCCATGTTATTGAAA+CGG 0.517279 6_3:-91347573 None:intergenic
TCGTTCATCGATGTTGCAAA+AGG 0.518766 6_3:+91346139 Msa0964570:CDS
TTTCAATAACATGGCCTGAT+GGG 0.520664 6_3:+91347576 Msa0964570:CDS
CTACCAATATATGCTTCTAC+TGG 0.522786 6_3:-91348296 None:intergenic
GTTTCAATAACATGGCCTGA+TGG 0.525709 6_3:+91347575 Msa0964570:CDS
GGTGGTGGCAGTGCTCCCTT+GGG 0.525748 6_3:+91344461 Msa0964570:CDS
TTTAAACAGGATGAATGGAC+GGG 0.526478 6_3:+91347476 Msa0964570:intron
ATGGACTTCTTATAATAAGA+GGG 0.529864 6_3:+91342634 Msa0964570:CDS
AGATACTATCCATTTGGTAG+AGG 0.534523 6_3:+91346372 Msa0964570:CDS
TACACCAGCATGTCCGATCA+AGG 0.535639 6_3:+91344168 Msa0964570:CDS
GGAACCGATATTGTTACTTG+TGG 0.535860 6_3:+91343999 Msa0964570:CDS
ACTCAGTAGTAGTGAGAAGT+TGG 0.538165 6_3:-91345327 None:intergenic
CTTACCAACTATGGTCTCTC+CGG 0.539146 6_3:+91345084 Msa0964570:CDS
GCAGGAGTAGAATACCTTGT+TGG 0.539818 6_3:-91346828 None:intergenic
GACCTACGATAAATCAGTAA+AGG 0.541724 6_3:+91347289 Msa0964570:CDS
CAACTTGACTCCCATGTACT+CGG 0.543603 6_3:-91345236 None:intergenic
ACCTGAAGAAATTCGGCCAA+TGG 0.544677 6_3:+91347541 Msa0964570:CDS
ATAGCTTGGGCAAAACCAAA+AGG 0.544807 6_3:-91348487 None:intergenic
GAAACGGCATAATTTCCCAT+TGG 0.545905 6_3:-91347557 None:intergenic
TTGACTCCCATGTACTCGGT+TGG 0.550559 6_3:-91345232 None:intergenic
TTTGCAGAACAACTTCCAGC+AGG 0.551212 6_3:+91344531 Msa0964570:CDS
CGCTTTCAACACGTCATCCT+CGG 0.552280 6_3:-91343949 None:intergenic
GCTGATATGGGTGCTAGAGT+TGG 0.558279 6_3:+91345031 Msa0964570:CDS
ATTACCTGACTAAACCCATC+AGG 0.562451 6_3:-91347590 None:intergenic
ATATGCAGTTGGAAATTCCT+CGG 0.567670 6_3:+91343911 Msa0964570:intron
CAACAGTGAGACGGAATGAT+CGG 0.575612 6_3:+91347363 Msa0964570:CDS
ACATTGACATTCTTGACCCA+AGG 0.579491 6_3:-91344477 None:intergenic
ATACAAAGCTAGTGTGTGGA+TGG 0.581619 6_3:-91348451 None:intergenic
GCAGCAGGCAAATGAGGTGG+TGG 0.582151 6_3:+91344446 Msa0964570:CDS
AGCATGTCCGATCAAGGACG+TGG 0.585341 6_3:+91344174 Msa0964570:CDS
ACGTCCTTGATCGGACATGC+TGG 0.585612 6_3:-91344172 None:intergenic
CCGGAGGCATGTCGATAACA+AGG 0.586363 6_3:-91345795 None:intergenic
TAGTGACTCCAGAAACCATA+GGG 0.591488 6_3:-91345303 None:intergenic
TGCATCCTGCAACAGTGAGA+CGG 0.597022 6_3:+91347354 Msa0964570:CDS
ATTATGCCGTTTCAATAACA+TGG 0.597601 6_3:+91347567 Msa0964570:CDS
TGCCTTTACTGATTTATCGT+AGG 0.597898 6_3:-91347291 None:intergenic
TTATGATCAACTTCAGACAA+TGG 0.600201 6_3:+91348158 Msa0964570:CDS
TATCGCTGTATCCAGTTGCA+AGG 0.603418 6_3:+91344575 Msa0964570:CDS
ACACTTTGCATTGTGAGTTG+TGG 0.604809 6_3:-91342167 None:intergenic
TATCAGCCAAAGTATAAGCA+AGG 0.626958 6_3:-91345015 None:intergenic
TAGTGGAATGCCTGAAGTGG+TGG 0.628766 6_3:+91346729 Msa0964570:CDS
CTGCATGTTGATGAGTGTGG+TGG 0.630762 6_3:-91342233 None:intergenic
CTAGGACGTGCAATTATGCG+TGG 0.637429 6_3:+91345280 Msa0964570:CDS
GGCTGTTCCAGTTGATACCG+AGG 0.645759 6_3:-91343928 None:intergenic
TTAGTGACTCCAGAAACCAT+AGG 0.646928 6_3:-91345304 None:intergenic
TGTGCTAAAATACGCCAACA+AGG 0.648845 6_3:+91346814 Msa0964570:CDS
TTAAACAGGATGAATGGACG+GGG 0.651763 6_3:+91347477 Msa0964570:intron
GGTATCAACTGGAACAGCCG+AGG 0.653632 6_3:+91343932 Msa0964570:CDS
CATTGACATTCTTGACCCAA+GGG 0.654050 6_3:-91344476 None:intergenic
TGATCGGTCTGCTCAGAGTG+TGG 0.657675 6_3:+91347379 Msa0964570:CDS
GAAGTGGTGGCTGATCCTCA+AGG 0.662874 6_3:+91346742 Msa0964570:CDS
ATCATTCCAACCGAGTACAT+GGG 0.663741 6_3:+91345226 Msa0964570:CDS
TGAGCAGCAGGCAAATGAGG+TGG 0.665630 6_3:+91344443 Msa0964570:CDS
ATCAACTTCAGACAATGGAA+CGG 0.672374 6_3:+91348163 Msa0964570:CDS
TATGATACAAAGCTAGTGTG+TGG 0.672585 6_3:-91348455 None:intergenic
GATTGATAAAGCTCTAGGAG+AGG 0.677023 6_3:+91344040 Msa0964570:CDS
ATCTTGGAAACATCACCTTG+AGG 0.684720 6_3:-91346757 None:intergenic
GAGGAATGGATAGAAAAGTG+TGG 0.688466 6_3:-91342206 None:intergenic
TTCTCGACAACAGCTACACA+AGG 0.689907 6_3:-91346321 None:intergenic
AGATAGTGGAATGCCTGAAG+TGG 0.694339 6_3:+91346726 Msa0964570:CDS
ATAGGGAGATCAAATAGATG+CGG 0.696235 6_3:-91346549 None:intergenic
TAAACAGGATGAATGGACGG+GGG 0.700512 6_3:+91347478 Msa0964570:intron
ATACTGCATGTTGATGAGTG+TGG 0.714831 6_3:-91342236 None:intergenic
AACTTCTCACTACTACTGAG+TGG 0.728636 6_3:+91345329 Msa0964570:CDS
TGAATGTCTCCTGTTCCCGG+AGG 0.729128 6_3:-91345811 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATTCATTTATTTATCA+TGG - chr6_3:91344321-91344340 None:intergenic 10.0%
!!! TGTTTTTAAATGTATAATAT+AGG + chr6_3:91345147-91345166 Msa0964570:intron 10.0%
!!! GTTTTTAAATGTATAATATA+GGG + chr6_3:91345148-91345167 Msa0964570:intron 10.0%
!!! AATGAAATTAACTATTTTTT+TGG + chr6_3:91345529-91345548 Msa0964570:intron 10.0%
!! TAAAGATTATTATATAAACA+TGG - chr6_3:91345678-91345697 None:intergenic 10.0%
!! AATAAGCATATATTAAAAAG+TGG - chr6_3:91342271-91342290 None:intergenic 15.0%
!!! CAATTTTTTTTTTTTTTAGC+AGG + chr6_3:91342548-91342567 Msa0964570:intron 15.0%
!!! AATATAATTGATTTTACTCA+AGG + chr6_3:91342744-91342763 Msa0964570:intron 15.0%
!!! ATATAATTGATTTTACTCAA+GGG + chr6_3:91342745-91342764 Msa0964570:intron 15.0%
!!! TAGTTAAAACATCATTTTTA+TGG + chr6_3:91342837-91342856 Msa0964570:intron 15.0%
!!! AGTTAAAACATCATTTTTAT+GGG + chr6_3:91342838-91342857 Msa0964570:intron 15.0%
!! CAATTTGTGTTTAAATATTT+CGG + chr6_3:91343586-91343605 Msa0964570:intron 15.0%
!! AAACTAAATGTAAAATAATC+AGG - chr6_3:91344757-91344776 None:intergenic 15.0%
!! TTAAATGTAATGTATTTACA+AGG - chr6_3:91344805-91344824 None:intergenic 15.0%
!! TTGTAAATACATTACATTTA+AGG + chr6_3:91344804-91344823 Msa0964570:intron 15.0%
!! ATTATACATTTAAAAACACA+TGG - chr6_3:91345145-91345164 None:intergenic 15.0%
!!! TTAAATAACATGATTTGTTA+AGG - chr6_3:91345427-91345446 None:intergenic 15.0%
!! TTAATTTAAAAAGATCAAGT+AGG - chr6_3:91345655-91345674 None:intergenic 15.0%
!!! AATTAATTTGAAAACCTAAT+AGG + chr6_3:91345715-91345734 Msa0964570:intron 15.0%
!! TAACATAATAATTCCTTTAA+TGG + chr6_3:91346005-91346024 Msa0964570:intron 15.0%
!! AATTAGAAAGTTAAAAACAA+TGG - chr6_3:91346035-91346054 None:intergenic 15.0%
!!! CAATTAATTTGTTTAATAGT+AGG + chr6_3:91347895-91347914 Msa0964570:intron 15.0%
!! ATTATGATTATAAGTTAGTA+AGG - chr6_3:91348032-91348051 None:intergenic 15.0%
!!! TTCTGTTAAATTTTTATATG+AGG - chr6_3:91348414-91348433 None:intergenic 15.0%
!! TAATTCATTTAATTGTGTTT+AGG + chr6_3:91348513-91348532 Msa0964570:three_prime_UTR 15.0%
!! AATTCATTTAATTGTGTTTA+GGG + chr6_3:91348514-91348533 Msa0964570:three_prime_UTR 15.0%
!!! TTTTTTCTTTGTCTTGATTT+TGG + chr6_3:91342328-91342347 Msa0964570:intron 20.0%
!! ATATGATGAACATTAATATC+AGG - chr6_3:91342407-91342426 None:intergenic 20.0%
!!! TGTATTTTTGTTGTGATTTT+TGG + chr6_3:91342439-91342458 Msa0964570:intron 20.0%
!!! TTTTTTTTTTTTAGCAGGTT+TGG + chr6_3:91342553-91342572 Msa0964570:intron 20.0%
!!! GTTTACAAGTTTTGTAAATA+AGG + chr6_3:91342805-91342824 Msa0964570:intron 20.0%
!!! GTTTTGTAAATAAGGATATT+TGG + chr6_3:91342813-91342832 Msa0964570:intron 20.0%
!! AAATACTTATGTCAATAGAT+AGG - chr6_3:91343010-91343029 None:intergenic 20.0%
!!! AAGTATTTGTGAGATTTTTT+TGG + chr6_3:91343022-91343041 Msa0964570:intron 20.0%
!! ATAAACTCATTACATATAGA+AGG + chr6_3:91344263-91344282 Msa0964570:intron 20.0%
!! TAAACTCATTACATATAGAA+GGG + chr6_3:91344264-91344283 Msa0964570:intron 20.0%
!! AATATGACTAATATATGATG+AGG - chr6_3:91344608-91344627 None:intergenic 20.0%
!! ATATTTGATGCTGATATTTA+TGG + chr6_3:91345055-91345074 Msa0964570:CDS 20.0%
!!! ATTTCTAATATTCGATTTTC+CGG - chr6_3:91345106-91345125 None:intergenic 20.0%
!!! TTTACGTTATTCAAGTTTAT+TGG + chr6_3:91345478-91345497 Msa0964570:intron 20.0%
!!! TAGGTTTTCAAATTAATTTC+TGG - chr6_3:91345713-91345732 None:intergenic 20.0%
!!! ATTTTTTCTGTCTATGTAAA+AGG + chr6_3:91346296-91346315 Msa0964570:intron 20.0%
!! AATTTGTATTAGAATGCATT+AGG - chr6_3:91347194-91347213 None:intergenic 20.0%
!!! TTTAAAGCTTTCTTTTTCAA+TGG - chr6_3:91347638-91347657 None:intergenic 20.0%
!! AAATCAACAGTCAAATAAAT+GGG - chr6_3:91347976-91347995 None:intergenic 20.0%
!! TAAATCAACAGTCAAATAAA+TGG - chr6_3:91347977-91347996 None:intergenic 20.0%
!! AAATGAATTACTAATAGCTT+GGG - chr6_3:91348503-91348522 None:intergenic 20.0%
!! TAAATGAATTACTAATAGCT+TGG - chr6_3:91348504-91348523 None:intergenic 20.0%
! ATAATCATATACTATGCAGT+AGG - chr6_3:91342376-91342395 None:intergenic 25.0%
!!! TTGGCTTTAATATATGATGA+TGG + chr6_3:91342458-91342477 Msa0964570:intron 25.0%
! TATGGACTTCTTATAATAAG+AGG + chr6_3:91342633-91342652 Msa0964570:CDS 25.0%
! ATGGACTTCTTATAATAAGA+GGG + chr6_3:91342634-91342653 Msa0964570:CDS 25.0%
!!! ACTTTTTTCTGTTGAAAGTA+TGG + chr6_3:91342716-91342735 Msa0964570:intron 25.0%
!!! TATGGGCTTTATTTAAAGTT+AGG + chr6_3:91342855-91342874 Msa0964570:intron 25.0%
!!! ATGGGCTTTATTTAAAGTTA+GGG + chr6_3:91342856-91342875 Msa0964570:intron 25.0%
! AATAAGCTGAAAACAGTTTA+TGG - chr6_3:91343077-91343096 None:intergenic 25.0%
!! TCCAAAAAGCATACATATTT+AGG - chr6_3:91343308-91343327 None:intergenic 25.0%
!!! AGCTATTTACTTTTGAACTA+GGG - chr6_3:91343454-91343473 None:intergenic 25.0%
!!! TAGCTATTTACTTTTGAACT+AGG - chr6_3:91343455-91343474 None:intergenic 25.0%
! TAGGAGTAATGTTGTAAATT+GGG - chr6_3:91343612-91343631 None:intergenic 25.0%
! TTAGGAGTAATGTTGTAAAT+TGG - chr6_3:91343613-91343632 None:intergenic 25.0%
!! TGTTTTCTTATATATGCAGT+TGG + chr6_3:91343900-91343919 Msa0964570:intron 25.0%
! AAATCCACAAGTAACAATAT+CGG - chr6_3:91344006-91344025 None:intergenic 25.0%
! AATATCATATATGTAGAGAC+TGG - chr6_3:91344367-91344386 None:intergenic 25.0%
! TCAAAATAGCAAATATGGTT+GGG - chr6_3:91344883-91344902 None:intergenic 25.0%
! TTCAAAATAGCAAATATGGT+TGG - chr6_3:91344884-91344903 None:intergenic 25.0%
! ACAGTTCAAAATAGCAAATA+TGG - chr6_3:91344888-91344907 None:intergenic 25.0%
! GGAAAATCGAATATTAGAAA+TGG + chr6_3:91345105-91345124 Msa0964570:CDS 25.0%
!! CATTTTCAATACATACTCTA+GGG - chr6_3:91345513-91345532 None:intergenic 25.0%
!! TCATTTTCAATACATACTCT+AGG - chr6_3:91345514-91345533 None:intergenic 25.0%
!! GATATTTGTTAGTAAGTTAG+TGG + chr6_3:91345551-91345570 Msa0964570:intron 25.0%
!! TTTCAAATTAATTTCTGGAG+AGG - chr6_3:91345708-91345727 None:intergenic 25.0%
!! CAATTTTCTCAAATTACTAC+TGG - chr6_3:91345946-91345965 None:intergenic 25.0%
!! CTAAAGGTTTGAAGTATAAT+AGG - chr6_3:91346605-91346624 None:intergenic 25.0%
! ATAATCAAATAGAATAGAGC+GGG - chr6_3:91347023-91347042 None:intergenic 25.0%
! CATAATCAAATAGAATAGAG+CGG - chr6_3:91347024-91347043 None:intergenic 25.0%
! ATGTATACTTAATGGAAAAG+AGG - chr6_3:91347070-91347089 None:intergenic 25.0%
! CTATTTGCATGTATACTTAA+TGG - chr6_3:91347078-91347097 None:intergenic 25.0%
!! TTATCCTTCTCATTTTAAAC+AGG + chr6_3:91347463-91347482 Msa0964570:intron 25.0%
! TTCAATGTAATCAGGAATAT+CGG - chr6_3:91347522-91347541 None:intergenic 25.0%
! ATTAGCATATCAATTGTTCT+CGG + chr6_3:91347667-91347686 Msa0964570:intron 25.0%
! AATCAACAGTCAAATAAATG+GGG - chr6_3:91347975-91347994 None:intergenic 25.0%
! GATATAAATGCTTTACTCAA+TGG - chr6_3:91348379-91348398 None:intergenic 25.0%
!! ATCATAAAACATTCTCCTTT+TGG + chr6_3:91348472-91348491 Msa0964570:three_prime_UTR 25.0%
! TTTCTGTTGAAAGTATGGAA+TGG + chr6_3:91342721-91342740 Msa0964570:intron 30.0%
! TTAACTGCATGGAAAAGTTT+TGG + chr6_3:91342770-91342789 Msa0964570:intron 30.0%
! ATTTAAAGTTAGGGTGTGTT+TGG + chr6_3:91342865-91342884 Msa0964570:intron 30.0%
TTATAAGTTATAGCCTCCAT+AGG + chr6_3:91342959-91342978 Msa0964570:intron 30.0%
TATAAGTTATAGCCTCCATA+GGG + chr6_3:91342960-91342979 Msa0964570:intron 30.0%
!!! AGATTTTTTTGGAGAGCTTA+AGG + chr6_3:91343033-91343052 Msa0964570:intron 30.0%
AATAAGCTGAAAATAGCTTG+TGG + chr6_3:91343191-91343210 Msa0964570:intron 30.0%
! GCCTAAATATGTATGCTTTT+TGG + chr6_3:91343304-91343323 Msa0964570:intron 30.0%
!!! ATATGTATGCTTTTTGGAAC+TGG + chr6_3:91343310-91343329 Msa0964570:intron 30.0%
! TTGGAACTGGTTTATAAAGA+TGG + chr6_3:91343323-91343342 Msa0964570:intron 30.0%
! TGGAACTGGTTTATAAAGAT+GGG + chr6_3:91343324-91343343 Msa0964570:intron 30.0%
ACAAAGTTCTCATAAGCTTA+AGG - chr6_3:91343387-91343406 None:intergenic 30.0%
CGATATTTGATCACAGATTT+CGG + chr6_3:91343498-91343517 Msa0964570:intron 30.0%
CTATTATCACTGAAAGCTTA+GGG + chr6_3:91343552-91343571 Msa0964570:intron 30.0%
TATAAAGCTGTGCATGTATA+TGG - chr6_3:91343672-91343691 None:intergenic 30.0%
! TAGAGACTCTTATGTTCTTT+TGG + chr6_3:91343715-91343734 Msa0964570:intron 30.0%
! AGAGACTCTTATGTTCTTTT+GGG + chr6_3:91343716-91343735 Msa0964570:intron 30.0%
! TTAATTCACTTGCGTTTTAG+AGG + chr6_3:91343766-91343785 Msa0964570:intron 30.0%
! TTTTCGCACTTGATTATGTA+CGG + chr6_3:91344338-91344357 Msa0964570:intron 30.0%
AGGAGTAAAGCACAAATTTA+TGG - chr6_3:91344677-91344696 None:intergenic 30.0%
! ACAAAGTCTTTAACTTCAAC+AGG - chr6_3:91344697-91344716 None:intergenic 30.0%
!!! TTTTCAGAAGCATTCTTCAA+AGG - chr6_3:91344841-91344860 None:intergenic 30.0%
TTGTCAAAACCAAAATTTGC+AGG + chr6_3:91344961-91344980 Msa0964570:intron 30.0%
TGTCAAAACCAAAATTTGCA+GGG + chr6_3:91344962-91344981 Msa0964570:intron 30.0%
AGTAAACCTTGCTTATACTT+TGG + chr6_3:91345009-91345028 Msa0964570:CDS 30.0%
GATATACTATGCATAGAGTA+GGG + chr6_3:91345380-91345399 Msa0964570:intron 30.0%
ACATCCTGTTTAAACTCTTT+CGG + chr6_3:91345604-91345623 Msa0964570:intron 30.0%
AAAAGATCAAGTAGGTAGTT+CGG - chr6_3:91345647-91345666 None:intergenic 30.0%
CATATCAAGCATAACCTATT+AGG - chr6_3:91345732-91345751 None:intergenic 30.0%
! CTTGATATGTAGTCTTGATT+TGG + chr6_3:91345743-91345762 Msa0964570:intron 30.0%
!! TGATTTGGTTTACACAATGT+AGG + chr6_3:91345758-91345777 Msa0964570:intron 30.0%
! GATTTGGTTTACACAATGTA+GGG + chr6_3:91345759-91345778 Msa0964570:intron 30.0%
! ATTTGGTTTACACAATGTAG+GGG + chr6_3:91345760-91345779 Msa0964570:intron 30.0%
! TGTTTTGTGAAACAAGCTAA+AGG - chr6_3:91345868-91345887 None:intergenic 30.0%
AAACAATGGCAAACCATTAA+AGG - chr6_3:91346021-91346040 None:intergenic 30.0%
GAATAGTATCAAGTATGTGT+TGG - chr6_3:91346254-91346273 None:intergenic 30.0%
! TTTTTCCATCAGCATCAAAA+TGG - chr6_3:91346353-91346372 None:intergenic 30.0%
GGAAAAAGATACTATCCATT+TGG + chr6_3:91346366-91346385 Msa0964570:CDS 30.0%
GAGAGAAGAGAATAAACTAA+AGG - chr6_3:91346621-91346640 None:intergenic 30.0%
TCCAAGATATTCCAAAATCT+AGG + chr6_3:91346772-91346791 Msa0964570:CDS 30.0%
!!! TCCTAGATTTTGGAATATCT+TGG - chr6_3:91346776-91346795 None:intergenic 30.0%
! CAAAATCACTGCTCAATTTT+CGG + chr6_3:91346937-91346956 Msa0964570:intron 30.0%
CGCTCTATTCTATTTGATTA+TGG + chr6_3:91347022-91347041 Msa0964570:intron 30.0%
ACATGCAAATAGAAAAAGTG+AGG + chr6_3:91347086-91347105 Msa0964570:intron 30.0%
AAGAATTCTTCATCTGAATC+TGG - chr6_3:91347332-91347351 None:intergenic 30.0%
! TCATCCTGTTTAAAATGAGA+AGG - chr6_3:91347470-91347489 None:intergenic 30.0%
! CTCATTTTAAACAGGATGAA+TGG + chr6_3:91347471-91347490 Msa0964570:intron 30.0%
! TTTTAAACAGGATGAATGGA+CGG + chr6_3:91347475-91347494 Msa0964570:intron 30.0%
ACATTGAACCTGAAGAAATT+CGG + chr6_3:91347534-91347553 Msa0964570:CDS 30.0%
! ATTATGCCGTTTCAATAACA+TGG + chr6_3:91347567-91347586 Msa0964570:CDS 30.0%
ATTGTTCTCGGCTAAAAATA+TGG + chr6_3:91347679-91347698 Msa0964570:intron 30.0%
!!! TTAAAGTGCCATTTTGCTTT+AGG + chr6_3:91347821-91347840 Msa0964570:intron 30.0%
AAGTTGAACCTAAAGCAAAA+TGG - chr6_3:91347832-91347851 None:intergenic 30.0%
!!! TTTAGGTTCAACTTTTTTGC+CGG + chr6_3:91347838-91347857 Msa0964570:intron 30.0%
! ATTGTCTGAAGTTGATCATA+AGG - chr6_3:91348159-91348178 None:intergenic 30.0%
TTATGATCAACTTCAGACAA+TGG + chr6_3:91348158-91348177 Msa0964570:CDS 30.0%
CGAATATCAATTACTCTCTT+CGG + chr6_3:91348547-91348566 Msa0964570:three_prime_UTR 30.0%
TAAGGGAGCAAAGTTCATTA+TGG + chr6_3:91342615-91342634 Msa0964570:CDS 35.0%
!!! CATGGAAAAGTTTTGGACTT+TGG + chr6_3:91342777-91342796 Msa0964570:intron 35.0%
!! CTTATTTCTGTAAGCTCTCA+AGG - chr6_3:91343177-91343196 None:intergenic 35.0%
TCGAATAAGACAATCCAAAC+AGG + chr6_3:91343282-91343301 Msa0964570:intron 35.0%
CATACATATTTAGGCCTGTT+TGG - chr6_3:91343299-91343318 None:intergenic 35.0%
! GGAACTGGTTTATAAAGATG+GGG + chr6_3:91343325-91343344 Msa0964570:intron 35.0%
GCTTAAGGTTTATCAAGCAT+TGG - chr6_3:91343372-91343391 None:intergenic 35.0%
CCTAAGCTTTCAGTGATAAT+AGG - chr6_3:91343554-91343573 None:intergenic 35.0%
CCTATTATCACTGAAAGCTT+AGG + chr6_3:91343551-91343570 Msa0964570:intron 35.0%
ATATGCAGTTGGAAATTCCT+CGG + chr6_3:91343911-91343930 Msa0964570:intron 35.0%
TTGCAGATTGATAAAGCTCT+AGG + chr6_3:91344035-91344054 Msa0964570:CDS 35.0%
!! AAGTTTTTGCTTTGAATCGC+AGG + chr6_3:91344123-91344142 Msa0964570:intron 35.0%
GGAAGTTGTTCTGCAAATAA+CGG - chr6_3:91344528-91344547 None:intergenic 35.0%
TATCAGCCAAAGTATAAGCA+AGG - chr6_3:91345018-91345037 None:intergenic 35.0%
TGCTTATACTTTGGCTGATA+TGG + chr6_3:91345018-91345037 Msa0964570:CDS 35.0%
GCTTATACTTTGGCTGATAT+GGG + chr6_3:91345019-91345038 Msa0964570:CDS 35.0%
! TTGGTTTCTTTTGGATTTGC+TGG + chr6_3:91345256-91345275 Msa0964570:CDS 35.0%
CGATATACTATGCATAGAGT+AGG + chr6_3:91345379-91345398 Msa0964570:intron 35.0%
CTGCATGAGATTTATGTGAT+AGG + chr6_3:91345454-91345473 Msa0964570:intron 35.0%
TGCTTTCAGATATTGAACCT+TGG + chr6_3:91345581-91345600 Msa0964570:intron 35.0%
ACCACATGTGACTATGAAAA+TGG + chr6_3:91345980-91345999 Msa0964570:intron 35.0%
! TCCATTTTCATAGTCACATG+TGG - chr6_3:91345984-91346003 None:intergenic 35.0%
CAATTACAGCAGCAGTTAAT+GGG - chr6_3:91346099-91346118 None:intergenic 35.0%
ACAATTACAGCAGCAGTTAA+TGG - chr6_3:91346100-91346119 None:intergenic 35.0%
! TCGGATGTTTTCAAAGCTTA+AGG + chr6_3:91346165-91346184 Msa0964570:CDS 35.0%
AGATACTATCCATTTGGTAG+AGG + chr6_3:91346372-91346391 Msa0964570:CDS 35.0%
GATTGTTCCATCATATTTGC+AGG + chr6_3:91346506-91346525 Msa0964570:intron 35.0%
TGAACAACCTGCAAATATGA+TGG - chr6_3:91346516-91346535 None:intergenic 35.0%
ATAGGGAGATCAAATAGATG+CGG - chr6_3:91346552-91346571 None:intergenic 35.0%
AGTAACATGAGACATACAGT+CGG - chr6_3:91346579-91346598 None:intergenic 35.0%
! CAACACATACTCCTAGATTT+TGG - chr6_3:91346786-91346805 None:intergenic 35.0%
! GCTTGTATTTTCCGATAAGT+AGG + chr6_3:91347044-91347063 Msa0964570:intron 35.0%
CAATGACTAATCACAAAGCT+CGG - chr6_3:91347142-91347161 None:intergenic 35.0%
GACCTACGATAAATCAGTAA+AGG + chr6_3:91347289-91347308 Msa0964570:CDS 35.0%
!! TGCCTTTACTGATTTATCGT+AGG - chr6_3:91347294-91347313 None:intergenic 35.0%
TTTAAACAGGATGAATGGAC+GGG + chr6_3:91347476-91347495 Msa0964570:intron 35.0%
! TCTTCAGGTTCAATGTAATC+AGG - chr6_3:91347530-91347549 None:intergenic 35.0%
ATCAGGCCATGTTATTGAAA+CGG - chr6_3:91347576-91347595 None:intergenic 35.0%
TTTCAATAACATGGCCTGAT+GGG + chr6_3:91347576-91347595 Msa0964570:CDS 35.0%
AGGTAATGTACTCATCAGAT+TGG + chr6_3:91347606-91347625 Msa0964570:intron 35.0%
TCTCGGCTAAAAATATGGTT+TGG + chr6_3:91347684-91347703 Msa0964570:intron 35.0%
ACAGAAGGAACACATGTATT+AGG - chr6_3:91347743-91347762 None:intergenic 35.0%
!!! GGTGTACTGTTTTTAACAGA+AGG - chr6_3:91347758-91347777 None:intergenic 35.0%
!! GGCACTTTAAAGTTTGCTTT+AGG - chr6_3:91347811-91347830 None:intergenic 35.0%
TAATAGTAGGCCTAAAGCTA+AGG + chr6_3:91347908-91347927 Msa0964570:intron 35.0%
! ACGACTAAAACCTTAGCTTT+AGG - chr6_3:91347921-91347940 None:intergenic 35.0%
!! GTTTTAGTCGTCTTATCCTT+GGG + chr6_3:91347930-91347949 Msa0964570:intron 35.0%
ATCAACTTCAGACAATGGAA+CGG + chr6_3:91348163-91348182 Msa0964570:CDS 35.0%
! CAACCAGTAGAAGCATATAT+TGG + chr6_3:91348293-91348312 Msa0964570:three_prime_UTR 35.0%
CTACCAATATATGCTTCTAC+TGG - chr6_3:91348299-91348318 None:intergenic 35.0%
TATGATACAAAGCTAGTGTG+TGG - chr6_3:91348458-91348477 None:intergenic 35.0%
ACACTTTGCATTGTGAGTTG+TGG - chr6_3:91342170-91342189 None:intergenic 40.0%
GAGGAATGGATAGAAAAGTG+TGG - chr6_3:91342209-91342228 None:intergenic 40.0%
! ATACTGCATGTTGATGAGTG+TGG - chr6_3:91342239-91342258 None:intergenic 40.0%
! TCTGTGAATGTAAAGTGCTC+AGG + chr6_3:91342584-91342603 Msa0964570:CDS 40.0%
! AGTGCTCAGGTTTTTCTCTA+AGG + chr6_3:91342597-91342616 Msa0964570:CDS 40.0%
! GTGCTCAGGTTTTTCTCTAA+GGG + chr6_3:91342598-91342617 Msa0964570:CDS 40.0%
AAGTTAGGGTGTGTTTGGAT+TGG + chr6_3:91342870-91342889 Msa0964570:intron 40.0%
CTTATTTCCATAAGCTCTCC+AGG + chr6_3:91343091-91343110 Msa0964570:intron 40.0%
! CCTGTTTTCATAAGCTATCC+TGG - chr6_3:91343112-91343131 None:intergenic 40.0%
CCAGGATAGCTTATGAAAAC+AGG + chr6_3:91343109-91343128 Msa0964570:intron 40.0%
TGAAAGCTTAGGGTTTACAG+AGG + chr6_3:91343562-91343581 Msa0964570:intron 40.0%
TAGTTTCCTGATAAGTGGAC+AGG - chr6_3:91343645-91343664 None:intergenic 40.0%
GCTCATAGTTTCCTGATAAG+TGG - chr6_3:91343650-91343669 None:intergenic 40.0%
CAGATCATTGATCCAGACTT+TGG + chr6_3:91343978-91343997 Msa0964570:CDS 40.0%
!! ACAATATCGGTTCCAAAGTC+TGG - chr6_3:91343993-91344012 None:intergenic 40.0%
! GGAACCGATATTGTTACTTG+TGG + chr6_3:91343999-91344018 Msa0964570:CDS 40.0%
!! GATTGATAAAGCTCTAGGAG+AGG + chr6_3:91344040-91344059 Msa0964570:CDS 40.0%
AGGAGAGGTCTTAAAATCAC+TGG + chr6_3:91344055-91344074 Msa0964570:intron 40.0%
TCATTTACCACGTCCTTGAT+CGG - chr6_3:91344184-91344203 None:intergenic 40.0%
GTCAGATATGGCTCAAACAA+TGG - chr6_3:91344215-91344234 None:intergenic 40.0%
ACTCTAACCTACGTCAGATA+TGG - chr6_3:91344227-91344246 None:intergenic 40.0%
ATATCTGACGTAGGTTAGAG+TGG + chr6_3:91344226-91344245 Msa0964570:intron 40.0%
CATTGACATTCTTGACCCAA+GGG - chr6_3:91344479-91344498 None:intergenic 40.0%
ACATTGACATTCTTGACCCA+AGG - chr6_3:91344480-91344499 None:intergenic 40.0%
! TCTGCAAATAACGGTTTTGC+TGG - chr6_3:91344519-91344538 None:intergenic 40.0%
CAAATATGGTTGGGACACTA+TGG - chr6_3:91344874-91344893 None:intergenic 40.0%
CAAAACCAAAATTTGCAGGG+TGG + chr6_3:91344965-91344984 Msa0964570:intron 40.0%
! GGAATGATGGTCTTCTTTTC+TGG - chr6_3:91345214-91345233 None:intergenic 40.0%
ATCATTCCAACCGAGTACAT+GGG + chr6_3:91345226-91345245 Msa0964570:CDS 40.0%
!!! GGAGTCAAGTTGGTTTCTTT+TGG + chr6_3:91345247-91345266 Msa0964570:CDS 40.0%
!!! TCTTTTGGATTTGCTGGTCT+AGG + chr6_3:91345262-91345281 Msa0964570:CDS 40.0%
TAGTGACTCCAGAAACCATA+GGG - chr6_3:91345306-91345325 None:intergenic 40.0%
TTAGTGACTCCAGAAACCAT+AGG - chr6_3:91345307-91345326 None:intergenic 40.0%
ACTCAGTAGTAGTGAGAAGT+TGG - chr6_3:91345330-91345349 None:intergenic 40.0%
AACTTCTCACTACTACTGAG+TGG + chr6_3:91345329-91345348 Msa0964570:CDS 40.0%
!! ATACATACTCTAGGGTAGAG+TGG - chr6_3:91345505-91345524 None:intergenic 40.0%
GAGTTTAAACAGGATGTCCA+AGG - chr6_3:91345601-91345620 None:intergenic 40.0%
GACACCGAAAGAGTTTAAAC+AGG - chr6_3:91345611-91345630 None:intergenic 40.0%
CATTCAACTCACTTTATGCC+AGG + chr6_3:91345828-91345847 Msa0964570:CDS 40.0%
! AAGGAGTTCAAGTTAGAACC+TGG - chr6_3:91345849-91345868 None:intergenic 40.0%
TCGATGTTGCAAAAGGAGTT+CGG + chr6_3:91346146-91346165 Msa0964570:CDS 40.0%
! GTTGGTTAGAAGCATGAGAT+TGG - chr6_3:91346236-91346255 None:intergenic 40.0%
!!! ATGTGCCATTTTGATGCTGA+TGG + chr6_3:91346345-91346364 Msa0964570:CDS 40.0%
TATCCATTTGGTAGAGGTTC+AGG + chr6_3:91346378-91346397 Msa0964570:CDS 40.0%
GACATACAGTCGGTCTAATA+GGG - chr6_3:91346569-91346588 None:intergenic 40.0%
AGACATACAGTCGGTCTAAT+AGG - chr6_3:91346570-91346589 None:intergenic 40.0%
ATCTTGGAAACATCACCTTG+AGG - chr6_3:91346760-91346779 None:intergenic 40.0%
TGTGCTAAAATACGCCAACA+AGG + chr6_3:91346814-91346833 Msa0964570:CDS 40.0%
CTTGTCAAATGTCATCAAGC+AGG - chr6_3:91346849-91346868 None:intergenic 40.0%
TGGAAAAGAGGCCTACTTAT+CGG - chr6_3:91347058-91347077 None:intergenic 40.0%
TTAAACAGGATGAATGGACG+GGG + chr6_3:91347477-91347496 Msa0964570:intron 40.0%
GAAACGGCATAATTTCCCAT+TGG - chr6_3:91347560-91347579 None:intergenic 40.0%
GTTTCAATAACATGGCCTGA+TGG + chr6_3:91347575-91347594 Msa0964570:CDS 40.0%
ATTACCTGACTAAACCCATC+AGG - chr6_3:91347593-91347612 None:intergenic 40.0%
!! GGTTTTAGTCGTCTTATCCT+TGG + chr6_3:91347929-91347948 Msa0964570:intron 40.0%
AAATGGGGATCTGCATTACA+GGG - chr6_3:91347960-91347979 None:intergenic 40.0%
TAAATGGGGATCTGCATTAC+AGG - chr6_3:91347961-91347980 None:intergenic 40.0%
AAGGAGCAATCTGCATCATA+TGG - chr6_3:91348140-91348159 None:intergenic 40.0%
ATACAAAGCTAGTGTGTGGA+TGG - chr6_3:91348454-91348473 None:intergenic 40.0%
ATAGCTTGGGCAAAACCAAA+AGG - chr6_3:91348490-91348509 None:intergenic 40.0%
!!! AGTGTGGTGGTTTTGAGGAA+TGG - chr6_3:91342223-91342242 None:intergenic 45.0%
!! TGATGAGTGTGGTGGTTTTG+AGG - chr6_3:91342228-91342247 None:intergenic 45.0%
! ACTCAAGGGCTTTAACTGCA+TGG + chr6_3:91342759-91342778 Msa0964570:intron 45.0%
CTCTCAAACAGTCTCAGAAG+TGG - chr6_3:91342923-91342942 None:intergenic 45.0%
GAGACTGTTTGAGAGAGCTT+AGG + chr6_3:91342928-91342947 Msa0964570:intron 45.0%
AAGCTATCCTGGAGAGCTTA+TGG - chr6_3:91343101-91343120 None:intergenic 45.0%
TGATAAGTGGACAGGTTGCT+TGG - chr6_3:91343637-91343656 None:intergenic 45.0%
AAGCAACCTGTCCACTTATC+AGG + chr6_3:91343636-91343655 Msa0964570:intron 45.0%
CGCAAGTGAATTAAGCAGAC+AGG - chr6_3:91343760-91343779 None:intergenic 45.0%
!!! GCGTTTTAGAGGAATCACCA+AGG + chr6_3:91343777-91343796 Msa0964570:intron 45.0%
GGAAATTCCTCGGTATCAAC+TGG + chr6_3:91343921-91343940 Msa0964570:CDS 45.0%
CATGTGTTGCAGAAATCTCG+AGG - chr6_3:91344081-91344100 None:intergenic 45.0%
!! TTGAATCGCAGGTGTCGTTT+CGG + chr6_3:91344134-91344153 Msa0964570:intron 45.0%
GTTTGAGCCATATCTGACGT+AGG + chr6_3:91344217-91344236 Msa0964570:intron 45.0%
TTTGCAGAACAACTTCCAGC+AGG + chr6_3:91344531-91344550 Msa0964570:CDS 45.0%
GAAATTGTCTGTAGACCTGC+TGG - chr6_3:91344549-91344568 None:intergenic 45.0%
TATCGCTGTATCCAGTTGCA+AGG + chr6_3:91344575-91344594 Msa0964570:CDS 45.0%
! CTACACCACCCTGCAAATTT+TGG - chr6_3:91344973-91344992 None:intergenic 45.0%
CAAAATTTGCAGGGTGGTGT+AGG + chr6_3:91344971-91344990 Msa0964570:intron 45.0%
TGGTCCAAGCTTACCAACTA+TGG + chr6_3:91345075-91345094 Msa0964570:CDS 45.0%
!! GAGACCATAGTTGGTAAGCT+TGG - chr6_3:91345082-91345101 None:intergenic 45.0%
CTTACCAACTATGGTCTCTC+CGG + chr6_3:91345084-91345103 Msa0964570:CDS 45.0%
! TTTTCCGGAGAGACCATAGT+TGG - chr6_3:91345091-91345110 None:intergenic 45.0%
CATGTACTCGGTTGGAATGA+TGG - chr6_3:91345227-91345246 None:intergenic 45.0%
CATCATTCCAACCGAGTACA+TGG + chr6_3:91345225-91345244 Msa0964570:CDS 45.0%
CAACTTGACTCCCATGTACT+CGG - chr6_3:91345239-91345258 None:intergenic 45.0%
AGTTGAATGTCTCCTGTTCC+CGG - chr6_3:91345817-91345836 None:intergenic 45.0%
TTCTCGACAACAGCTACACA+AGG - chr6_3:91346324-91346343 None:intergenic 45.0%
GATCCTGAACCTCTACCAAA+TGG - chr6_3:91346384-91346403 None:intergenic 45.0%
TTGCAGGTTGTTCAGCAGTT+TGG + chr6_3:91346522-91346541 Msa0964570:intron 45.0%
TTGTCACAGCTATCTGCTTC+TGG + chr6_3:91346703-91346722 Msa0964570:intron 45.0%
! CTATCTGCTTCTGGAGATAG+TGG + chr6_3:91346712-91346731 Msa0964570:CDS 45.0%
!! AGATAGTGGAATGCCTGAAG+TGG + chr6_3:91346726-91346745 Msa0964570:CDS 45.0%
GCAGGAGTAGAATACCTTGT+TGG - chr6_3:91346831-91346850 None:intergenic 45.0%
! TGAGGCAGTCACTTTGTTGT+CGG + chr6_3:91347104-91347123 Msa0964570:intron 45.0%
CAACAGTGAGACGGAATGAT+CGG + chr6_3:91347363-91347382 Msa0964570:CDS 45.0%
TAAACAGGATGAATGGACGG+GGG + chr6_3:91347478-91347497 Msa0964570:intron 45.0%
ACCTGAAGAAATTCGGCCAA+TGG + chr6_3:91347541-91347560 Msa0964570:CDS 45.0%
CCTGAAGAAATTCGGCCAAT+GGG + chr6_3:91347542-91347561 Msa0964570:CDS 45.0%
CTTTAGGCCTCATTCATCCT+TGG - chr6_3:91347795-91347814 None:intergenic 45.0%
!!! AACTTTTTTGCCGGCATGTG+TGG + chr6_3:91347847-91347866 Msa0964570:intron 45.0%
AGCAAAAAGACCACACATGC+CGG - chr6_3:91347860-91347879 None:intergenic 45.0%
CAGACAATGGAACGGTTAGT+TGG + chr6_3:91348171-91348190 Msa0964570:CDS 45.0%
! CTGCATGTTGATGAGTGTGG+TGG - chr6_3:91342236-91342255 None:intergenic 50.0%
GCTAGAGCTGCTTCTGTTGA+AGG + chr6_3:91342680-91342699 Msa0964570:CDS 50.0%
AATCCAAGCTGACCCTATGG+AGG - chr6_3:91342975-91342994 None:intergenic 50.0%
TCCATAGGGTCAGCTTGGAT+TGG + chr6_3:91342974-91342993 Msa0964570:intron 50.0%
ACCAATCCAAGCTGACCCTA+TGG - chr6_3:91342978-91342997 None:intergenic 50.0%
GTGGACAGGTTGCTTGGTTT+AGG - chr6_3:91343631-91343650 None:intergenic 50.0%
ACAGACTACGCACACATCCT+TGG - chr6_3:91343797-91343816 None:intergenic 50.0%
CGCTTTCAACACGTCATCCT+CGG - chr6_3:91343952-91343971 None:intergenic 50.0%
TACACCAGCATGTCCGATCA+AGG + chr6_3:91344168-91344187 Msa0964570:CDS 50.0%
CACATGACAGTTTGAGCAGC+AGG + chr6_3:91344431-91344450 Msa0964570:intron 50.0%
GTTTGAGCAGCAGGCAAATG+AGG + chr6_3:91344440-91344459 Msa0964570:intron 50.0%
GAGGAGATTCACCTTGCAAC+TGG - chr6_3:91344589-91344608 None:intergenic 50.0%
GCTGATATGGGTGCTAGAGT+TGG + chr6_3:91345031-91345050 Msa0964570:CDS 50.0%
TTGACTCCCATGTACTCGGT+TGG - chr6_3:91345235-91345254 None:intergenic 50.0%
CGAGTACATGGGAGTCAAGT+TGG + chr6_3:91345237-91345256 Msa0964570:CDS 50.0%
CTAGGACGTGCAATTATGCG+TGG + chr6_3:91345280-91345299 Msa0964570:CDS 50.0%
TGCAATTATGCGTGGCCCTA+TGG + chr6_3:91345288-91345307 Msa0964570:CDS 50.0%
! CCTTGTTATCGACATGCCTC+CGG + chr6_3:91345795-91345814 Msa0964570:CDS 50.0%
! CTTGTTATCGACATGCCTCC+GGG + chr6_3:91345796-91345815 Msa0964570:CDS 50.0%
TGGTAGAGGTTCAGGATCTC+AGG + chr6_3:91346386-91346405 Msa0964570:CDS 50.0%
TAGTGGAATGCCTGAAGTGG+TGG + chr6_3:91346729-91346748 Msa0964570:CDS 50.0%
! TTTGTTGTCGGAGGCACAAC+TGG + chr6_3:91347116-91347135 Msa0964570:intron 50.0%
TGCATCCTGCAACAGTGAGA+CGG + chr6_3:91347354-91347373 Msa0964570:CDS 50.0%
TCATTCCGTCTCACTGTTGC+AGG - chr6_3:91347362-91347381 None:intergenic 50.0%
CCCATTGGCCGAATTTCTTC+AGG - chr6_3:91347545-91347564 None:intergenic 50.0%
!! ATGGCCTGATGGGTTTAGTC+AGG + chr6_3:91347586-91347605 Msa0964570:CDS 50.0%
! CATTCATCCTTGGCTCGACT+CGG - chr6_3:91347785-91347804 None:intergenic 50.0%
AGTCGAGCCAAGGATGAATG+AGG + chr6_3:91347785-91347804 Msa0964570:intron 50.0%
TAGTCGTCTTATCCTTGGGC+CGG + chr6_3:91347934-91347953 Msa0964570:intron 50.0%
TAGCCTCCATAGGGTCAGCT+TGG + chr6_3:91342969-91342988 Msa0964570:intron 55.0%
! GGCTGTTCCAGTTGATACCG+AGG - chr6_3:91343931-91343950 None:intergenic 55.0%
GGTATCAACTGGAACAGCCG+AGG + chr6_3:91343932-91343951 Msa0964570:CDS 55.0%
ACGTCCTTGATCGGACATGC+TGG - chr6_3:91344175-91344194 None:intergenic 55.0%
AGCATGTCCGATCAAGGACG+TGG + chr6_3:91344174-91344193 Msa0964570:CDS 55.0%
TGAGCAGCAGGCAAATGAGG+TGG + chr6_3:91344443-91344462 Msa0964570:CDS 55.0%
ATGCGTGGCCCTATGGTTTC+TGG + chr6_3:91345295-91345314 Msa0964570:CDS 55.0%
! CCGGAGGCATGTCGATAACA+AGG - chr6_3:91345798-91345817 None:intergenic 55.0%
TGAATGTCTCCTGTTCCCGG+AGG - chr6_3:91345814-91345833 None:intergenic 55.0%
GAGGTTCAGGATCTCAGGCA+TGG + chr6_3:91346391-91346410 Msa0964570:intron 55.0%
TGAGGATCAGCCACCACTTC+AGG - chr6_3:91346742-91346761 None:intergenic 55.0%
GAAGTGGTGGCTGATCCTCA+AGG + chr6_3:91346742-91346761 Msa0964570:CDS 55.0%
! GGCAGTCACTTTGTTGTCGG+AGG + chr6_3:91347107-91347126 Msa0964570:intron 55.0%
TGATCGGTCTGCTCAGAGTG+TGG + chr6_3:91347379-91347398 Msa0964570:CDS 55.0%
GCAGCAGGCAAATGAGGTGG+TGG + chr6_3:91344446-91344465 Msa0964570:CDS 60.0%
ATCGACATGCCTCCGGGAAC+AGG + chr6_3:91345802-91345821 Msa0964570:CDS 60.0%
GGGGATCTGCATTACAGGGC+CGG - chr6_3:91347956-91347975 None:intergenic 60.0%
! AGGTGGTGGCAGTGCTCCCT+TGG + chr6_3:91344460-91344479 Msa0964570:CDS 65.0%
! GGTGGTGGCAGTGCTCCCTT+GGG + chr6_3:91344461-91344480 Msa0964570:CDS 65.0%
ACCACAGCCGAGTCGAGCCA+AGG + chr6_3:91347775-91347794 Msa0964570:intron 65.0%
!! TCCTTGGCTCGACTCGGCTG+TGG - chr6_3:91347779-91347798 None:intergenic 65.0%
TGCATTACAGGGCCGGCCCA+AGG - chr6_3:91347949-91347968 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 91342144 91348585 91342144 ID=Msa0964570;Name=Msa0964570
chr6_3 mRNA 91342144 91348585 91342144 ID=Msa0964570-mRNA-1;Parent=Msa0964570;Name=Msa0964570-mRNA-1;_AED=0.14;_eAED=0.14;_QI=35|1|1|1|1|1|15|382|526
chr6_3 exon 91342144 91342254 91342144 ID=Msa0964570-mRNA-1:exon:16460;Parent=Msa0964570-mRNA-1
chr6_3 exon 91342570 91342701 91342570 ID=Msa0964570-mRNA-1:exon:16461;Parent=Msa0964570-mRNA-1
chr6_3 exon 91343919 91344061 91343919 ID=Msa0964570-mRNA-1:exon:16462;Parent=Msa0964570-mRNA-1
chr6_3 exon 91344145 91344195 91344145 ID=Msa0964570-mRNA-1:exon:16463;Parent=Msa0964570-mRNA-1
chr6_3 exon 91344441 91344596 91344441 ID=Msa0964570-mRNA-1:exon:16464;Parent=Msa0964570-mRNA-1
chr6_3 exon 91344983 91345126 91344983 ID=Msa0964570-mRNA-1:exon:16465;Parent=Msa0964570-mRNA-1
chr6_3 exon 91345208 91345350 91345208 ID=Msa0964570-mRNA-1:exon:16466;Parent=Msa0964570-mRNA-1
chr6_3 exon 91345780 91345849 91345780 ID=Msa0964570-mRNA-1:exon:16467;Parent=Msa0964570-mRNA-1
chr6_3 exon 91346091 91346186 91346091 ID=Msa0964570-mRNA-1:exon:16468;Parent=Msa0964570-mRNA-1
chr6_3 exon 91346318 91346407 91346318 ID=Msa0964570-mRNA-1:exon:16469;Parent=Msa0964570-mRNA-1
chr6_3 exon 91346528 91346581 91346528 ID=Msa0964570-mRNA-1:exon:16470;Parent=Msa0964570-mRNA-1
chr6_3 exon 91346712 91346835 91346712 ID=Msa0964570-mRNA-1:exon:16471;Parent=Msa0964570-mRNA-1
chr6_3 exon 91347276 91347400 91347276 ID=Msa0964570-mRNA-1:exon:16472;Parent=Msa0964570-mRNA-1
chr6_3 exon 91347485 91347607 91347485 ID=Msa0964570-mRNA-1:exon:16473;Parent=Msa0964570-mRNA-1
chr6_3 exon 91348150 91348585 91348150 ID=Msa0964570-mRNA-1:exon:16474;Parent=Msa0964570-mRNA-1
chr6_3 five_prime_UTR 91342144 91342178 91342144 ID=Msa0964570-mRNA-1:five_prime_utr;Parent=Msa0964570-mRNA-1
chr6_3 CDS 91342179 91342254 91342179 ID=Msa0964570-mRNA-1:cds;Parent=Msa0964570-mRNA-1
chr6_3 CDS 91342570 91342701 91342570 ID=Msa0964570-mRNA-1:cds;Parent=Msa0964570-mRNA-1
chr6_3 CDS 91343919 91344061 91343919 ID=Msa0964570-mRNA-1:cds;Parent=Msa0964570-mRNA-1
chr6_3 CDS 91344145 91344195 91344145 ID=Msa0964570-mRNA-1:cds;Parent=Msa0964570-mRNA-1
chr6_3 CDS 91344441 91344596 91344441 ID=Msa0964570-mRNA-1:cds;Parent=Msa0964570-mRNA-1
chr6_3 CDS 91344983 91345126 91344983 ID=Msa0964570-mRNA-1:cds;Parent=Msa0964570-mRNA-1
chr6_3 CDS 91345208 91345350 91345208 ID=Msa0964570-mRNA-1:cds;Parent=Msa0964570-mRNA-1
chr6_3 CDS 91345780 91345849 91345780 ID=Msa0964570-mRNA-1:cds;Parent=Msa0964570-mRNA-1
chr6_3 CDS 91346091 91346186 91346091 ID=Msa0964570-mRNA-1:cds;Parent=Msa0964570-mRNA-1
chr6_3 CDS 91346318 91346407 91346318 ID=Msa0964570-mRNA-1:cds;Parent=Msa0964570-mRNA-1
chr6_3 CDS 91346528 91346581 91346528 ID=Msa0964570-mRNA-1:cds;Parent=Msa0964570-mRNA-1
chr6_3 CDS 91346712 91346835 91346712 ID=Msa0964570-mRNA-1:cds;Parent=Msa0964570-mRNA-1
chr6_3 CDS 91347276 91347400 91347276 ID=Msa0964570-mRNA-1:cds;Parent=Msa0964570-mRNA-1
chr6_3 CDS 91347485 91347607 91347485 ID=Msa0964570-mRNA-1:cds;Parent=Msa0964570-mRNA-1
chr6_3 CDS 91348150 91348203 91348150 ID=Msa0964570-mRNA-1:cds;Parent=Msa0964570-mRNA-1
chr6_3 three_prime_UTR 91348204 91348585 91348204 ID=Msa0964570-mRNA-1:three_prime_utr;Parent=Msa0964570-mRNA-1
Gene Sequence

>Msa0964570

ATGCAAAGTGTTCAAGCTTCATCTTCACCACACTTTTCTATCCATTCCTCAAAACCACCACACTCATCAACATGCAGTTTGGTTACTTCTTCTGTGAATGTAAAGTGCTCAGGTTTTTCTCTAAGGGAGCAAAGTTCATTATGGACTTCTTATAATAAGAGGGTTATCTTGAAAAGCTCTTTTTCTGCTAGAGCTGCTTCTGTTGAAGTTGGAAATTCCTCGGTATCAACTGGAACAGCCGAGGATGACGTGTTGAAAGCGTTGTCTCAGATCATTGATCCAGACTTTGGAACCGATATTGTTACTTGTGGATTTGTGAAAGATTTGCAGATTGATAAAGCTCTAGGAGAGGTGTCGTTTCGGTTAGAGCTCACTACACCAGCATGTCCGATCAAGGACGTGTTTGAGCAGCAGGCAAATGAGGTGGTGGCAGTGCTCCCTTGGGTCAAGAATGTCAATGTTACGATGTCTGCACAGCCAGCAAAACCGTTATTTGCAGAACAACTTCCAGCAGGTCTACAGACAATTTCAAATATTATCGCTGTATCCAGTTGCAAGGGTGGTGTAGGAAAATCAACTGTAGCAGTAAACCTTGCTTATACTTTGGCTGATATGGGTGCTAGAGTTGGTATATTTGATGCTGATATTTATGGTCCAAGCTTACCAACTATGGTCTCTCCGGAAAATCGAATATTAGAAATGAATCCAGAAAAGAAGACCATCATTCCAACCGAGTACATGGGAGTCAAGTTGGTTTCTTTTGGATTTGCTGGTCTAGGACGTGCAATTATGCGTGGCCCTATGGTTTCTGGAGTCACTAACCAACTTCTCACTACTACTGAGTGGGGCGAGCTTGATTACCTTGTTATCGACATGCCTCCGGGAACAGGAGACATTCAACTCACTTTATGCCAGATAGTCCCATTAACTGCTGCTGTAATTGTTACCACTCCTCAAAAACTATCGTTCATCGATGTTGCAAAAGGAGTTCGGATGTTTTCAAAGCTTAAGGTACCTTGTGTAGCTGTTGTCGAGAACATGTGCCATTTTGATGCTGATGGAAAAAGATACTATCCATTTGGTAGAGGTTCAGGATCTCAGGTTGTTCAGCAGTTTGGAATACCGCATCTATTTGATCTCCCTATTAGACCGACTCTATCTGCTTCTGGAGATAGTGGAATGCCTGAAGTGGTGGCTGATCCTCAAGGTGATGTTTCCAAGATATTCCAAAATCTAGGAGTATGTGTTGTGCAGCAGTGTGCTAAAATACGCCAACAAGTTTCAACAGCTGTGACCTACGATAAATCAGTAAAGGCAATTAGAGTAAAAGTACCAGATTCAGATGAAGAATTCTTTCTGCATCCTGCAACAGTGAGACGGAATGATCGGTCTGCTCAGAGTGTGGATGAATGGACGGGGGAGCAAAAATTGCAGTATACCGATATTCCTGATTACATTGAACCTGAAGAAATTCGGCCAATGGGAAATTATGCCGTTTCAATAACATGGCCTGATGGGTTTAGTCAGATTGCTCCTTATGATCAACTTCAGACAATGGAACGGTTAGTTGGTGTTTCTTGA

Protein sequence

>Msa0964570

MQSVQASSSPHFSIHSSKPPHSSTCSLVTSSVNVKCSGFSLREQSSLWTSYNKRVILKSSFSARAASVEVGNSSVSTGTAEDDVLKALSQIIDPDFGTDIVTCGFVKDLQIDKALGEVSFRLELTTPACPIKDVFEQQANEVVAVLPWVKNVNVTMSAQPAKPLFAEQLPAGLQTISNIIAVSSCKGGVGKSTVAVNLAYTLADMGARVGIFDADIYGPSLPTMVSPENRILEMNPEKKTIIPTEYMGVKLVSFGFAGLGRAIMRGPMVSGVTNQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQIVPLTAAVIVTTPQKLSFIDVAKGVRMFSKLKVPCVAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVVADPQGDVSKIFQNLGVCVVQQCAKIRQQVSTAVTYDKSVKAIRVKVPDSDEEFFLHPATVRRNDRSAQSVDEWTGEQKLQYTDIPDYIEPEEIRPMGNYAVSITWPDGFSQIAPYDQLQTMERLVGVS*