AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0315010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0315010 MtrunA17_Chr2g0286411 96.605 324 8 2 1 323 1 322 0.0 644
Msa0315010 MtrunA17_Chr4g0052751 79.464 112 23 0 212 323 12 123 3.11e-63 196
Msa0315010 MtrunA17_Chr4g0052771 66.364 110 37 0 74 183 79 188 1.62e-51 169
Msa0315010 MtrunA17_Chr8g0346791 84.483 58 8 1 154 210 19 76 7.93e-28 104
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0315010 AT2G39080.1 63.605 294 92 2 39 320 57 347 9.27e-133 382

Find 93 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGATGGCTTTAGAGAAAT+TGG 0.165423 2_4:+11178973 Msa0315020:CDS
TATTTCATGTCATTTATTTA+TGG 0.177612 2_4:-11175044 Msa0315010:three_prime_UTR
TATGGTTATCATTTCTCTTT+TGG 0.190253 2_4:-11175026 Msa0315010:three_prime_UTR
ATCGTTGGTCCTGGTGTTCT+TGG 0.252463 2_4:-11178850 Msa0315010:CDS
CCTTATGATTGTAACGATAA+TGG 0.258705 2_4:-11177210 Msa0315010:CDS
ATTCATTTGTTTGTTATTGA+TGG 0.266333 2_4:-11179100 Msa0315010:exon
TGGATTACCTTGGTGATCTT+AGG 0.305690 2_4:-11178362 Msa0315010:intron
TCTTCTCCTTCTCTTTCAAT+TGG 0.307326 2_4:-11178889 Msa0315010:CDS
GAAAATATTGTGCTCGAGTT+TGG 0.312631 2_4:-11176931 Msa0315010:CDS
CTTTAGAGAAATTGGGGAAT+TGG 0.315540 2_4:+11178981 Msa0315020:CDS
TCATGAAGAGTTGGTTCAAT+TGG 0.321265 2_4:-11178466 Msa0315010:CDS
GTATTAGTCCTGCTTTGAAT+TGG 0.338500 2_4:-11178443 Msa0315010:CDS
TTTAGAGAAATTGGGGAATT+GGG 0.340909 2_4:+11178982 Msa0315020:CDS
TCGGCTCCCACCCAACTTCT+TGG 0.350973 2_4:+11175350 None:intergenic
TGCTCCTCCTTATCAATCAT+TGG 0.356100 2_4:-11178382 Msa0315010:CDS
AAAGTTGAAATTTACTTTGA+AGG 0.365545 2_4:-11175158 Msa0315010:three_prime_UTR
GTGAGATATTCAAATTCAAA+TGG 0.370447 2_4:+11178920 None:intergenic
ATCTTCATCTTTCTCTTCCA+TGG 0.372647 2_4:-11178947 Msa0315010:CDS
GAATGATTCATCTTTGTTCC+CGG 0.374922 2_4:-11175001 Msa0315010:three_prime_UTR
GGGAAACTTATGGTCAGATT+TGG 0.376255 2_4:+11178419 None:intergenic
GAAGAGAAAGATGAAGATAA+AGG 0.391771 2_4:+11178952 Msa0315020:CDS
GTCGTTTGGTCGCTCATCAA+TGG 0.392509 2_4:-11178828 Msa0315010:CDS
TCTATTGAATCAGGAATATG+AGG 0.393588 2_4:-11178526 Msa0315010:intron
TGTTTGTTATTGATGGCATT+AGG 0.402344 2_4:-11179093 Msa0315010:exon
GTGATGGCTTTAGAGAAATT+GGG 0.407211 2_4:+11178974 Msa0315020:CDS
TCCTGGTGTTCTTGGTCGTT+TGG 0.407798 2_4:-11178842 Msa0315010:CDS
CACCAGGACCAACGATTAGA+AGG 0.408443 2_4:+11178857 None:intergenic
CTCCTCCCAATTGGCACGAC+TGG 0.408761 2_4:+11176982 None:intergenic
GATACTCCAGTCGTGCCAAT+TGG 0.419650 2_4:-11176988 Msa0315010:CDS
CAATGACATAGGGAAACTTA+TGG 0.425090 2_4:+11178409 None:intergenic
GTGGTGGAGTTGAGAAGAAA+TGG 0.432736 2_4:+11179004 Msa0315020:CDS
CATGAAGAGTTGGTTCAATT+GGG 0.441809 2_4:-11178465 Msa0315010:CDS
GTTCTCGGGCTCCTCCCAAT+TGG 0.450558 2_4:+11176973 None:intergenic
ACTGAATCTCATACATTATG+AGG 0.452895 2_4:-11176702 Msa0315010:intron
TCAGGCAGGCTGCAGAATGC+TGG 0.455175 2_4:-11177272 Msa0315010:intron
TGGTGGAGTTGAGAAGAAAT+GGG 0.463518 2_4:+11179005 Msa0315020:CDS
TTTAGAAGGACATCAGTTCT+CGG 0.472428 2_4:+11176958 None:intergenic
TTAGAAGGACATCAGTTCTC+GGG 0.474461 2_4:+11176959 None:intergenic
GTGATAATCATCCTTTGTCC+AGG 0.478529 2_4:-11176477 Msa0315010:intron
AAACGGTGTAAATGTGTTAG+TGG 0.480620 2_4:+11179033 Msa0315020:intron
GCATGAAGAGAGTGTTGAAA+TGG 0.485200 2_4:+11179061 Msa0315020:intron
ATGAGATTCAGTACGTGATC+AGG 0.489741 2_4:+11176713 None:intergenic
CACACTTACTATTTAGAGAA+GGG 0.494029 2_4:-11176752 Msa0315010:CDS
TGAGATATTCAAATTCAAAT+GGG 0.498060 2_4:+11178921 None:intergenic
TATCAATCATTGGATTACCT+TGG 0.501321 2_4:-11178372 Msa0315010:CDS
ATTGAAAGAGAAGGAGAAGA+AGG 0.501906 2_4:+11178892 None:intergenic
CAAAGATCTCACTCAAAAGT+TGG 0.502049 2_4:+11175289 None:intergenic
ATACTCCAGTCGTGCCAATT+GGG 0.502069 2_4:-11176987 Msa0315010:CDS
CCATTATCGTTACAATCATA+AGG 0.503939 2_4:+11177210 None:intergenic
TACTGATCATCATGAAGAGT+TGG 0.507041 2_4:-11178475 Msa0315010:CDS
GAAATTGGGGAATTGGGTGG+TGG 0.511531 2_4:+11178988 Msa0315020:CDS
AAAGATGAAGATAAAGGTGA+TGG 0.514258 2_4:+11178958 Msa0315020:CDS
AGAGAAATTGGGGAATTGGG+TGG 0.519135 2_4:+11178985 Msa0315020:CDS
AGGTAATCCAATGATTGATA+AGG 0.521831 2_4:+11178375 None:intergenic
TGATGGCTTTAGAGAAATTG+GGG 0.526292 2_4:+11178975 Msa0315020:CDS
AATATTGTGCTCGAGTTTGG+TGG 0.533294 2_4:-11176928 Msa0315010:intron
CTTCAAAATTGCAACGGAGA+GGG 0.536306 2_4:+11176531 None:intergenic
CAGGCTGCAGAATGCTGGAA+TGG 0.537544 2_4:-11177267 Msa0315010:CDS
GACCTTCTAATCGTTGGTCC+TGG 0.539275 2_4:-11178859 Msa0315010:CDS
AGGAGCACATACAATGACAT+AGG 0.541031 2_4:+11178398 None:intergenic
ATGGATCTAGTCGACAAAAG+TGG 0.544166 2_4:-11175621 Msa0315010:CDS
CAAATTCAAATGGGTAGCCA+TGG 0.546729 2_4:+11178930 None:intergenic
AACTCGCCAAGAAGTTGGGT+GGG 0.553451 2_4:-11175356 Msa0315010:CDS
GCAGGAACTGATGATCCTCT+TGG 0.554847 2_4:-11175400 Msa0315010:intron
TTGTTTCTTCAAAATTGCAA+CGG 0.560832 2_4:+11176525 None:intergenic
ACCAAACGACCAAGAACACC+AGG 0.561950 2_4:+11178841 None:intergenic
GATTTGGTCCAATTCAAAGC+AGG 0.563850 2_4:+11178435 None:intergenic
GGTCGCTCATCAATGGCGGC+AGG 0.565178 2_4:-11178821 Msa0315010:intron
ACACACTTACTATTTAGAGA+AGG 0.569345 2_4:-11176753 Msa0315010:CDS
CAACATGACCTTCTAATCGT+TGG 0.577258 2_4:-11178865 Msa0315010:CDS
TAATCCAATGATTGATAAGG+AGG 0.577326 2_4:+11178378 None:intergenic
TGGATCTAGTCGACAAAAGT+GGG 0.582143 2_4:-11175620 Msa0315010:CDS
ACACTTACTATTTAGAGAAG+GGG 0.585739 2_4:-11176751 Msa0315010:CDS
TTGTTATTGATGGCATTAGG+AGG 0.586805 2_4:-11179090 Msa0315010:exon
GCAGAATGCTGGAATGGAGA+AGG 0.593499 2_4:-11177261 Msa0315010:CDS
TGTTGTCCAATTGAAAGAGA+AGG 0.599252 2_4:+11178883 None:intergenic
AAACTCGCCAAGAAGTTGGG+TGG 0.604194 2_4:-11175357 Msa0315010:CDS
GGAGCACATACAATGACATA+GGG 0.607743 2_4:+11178399 None:intergenic
GTGAACAATGAACATTGTCA+AGG 0.609453 2_4:-11175136 Msa0315010:three_prime_UTR
GGTGGAGTTGAGAAGAAATG+GGG 0.613805 2_4:+11179006 Msa0315020:CDS
TGAGCAAAGCTAGAGTACTT+CGG 0.623491 2_4:+11175331 None:intergenic
CTCCAGTCGTGCCAATTGGG+AGG 0.623505 2_4:-11176984 Msa0315010:CDS
TCTTCAAAATTGCAACGGAG+AGG 0.627129 2_4:+11176530 None:intergenic
TTGTTCAATCTCTTACCAAG+AGG 0.630106 2_4:+11175385 None:intergenic
CGATAATGGTTTATGCGATG+AGG 0.634674 2_4:-11177196 Msa0315010:intron
AAATCACCTAACCTGGACAA+AGG 0.653574 2_4:+11176466 None:intergenic
GGTGTAAATGTGTTAGTGGT+TGG 0.653759 2_4:+11179037 Msa0315020:intron
GTTTGGTCGCTCATCAATGG+CGG 0.654822 2_4:-11178825 Msa0315010:CDS
GTGGAGTTGAGAAGAAATGG+GGG 0.662811 2_4:+11179007 Msa0315020:CDS
CTATTGAATCAGGAATATGA+GGG 0.666346 2_4:-11178525 Msa0315010:intron
TCAAGGTATAATACTACACA+AGG 0.674883 2_4:-11175119 Msa0315010:three_prime_UTR
AAGTTGGTCATAGAGTCTCA+AGG 0.697220 2_4:+11175305 None:intergenic
TTGCTCACCTAAGATCACCA+AGG 0.722733 2_4:+11178355 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTCTAATATATTCAT+AGG - chr2_4:11175419-11175438 Msa0315010:intron 10.0%
!!! TGATAAATATTTGATATTTT+AGG + chr2_4:11176139-11176158 None:intergenic 10.0%
!! ATTAAAACTTAAAAACTTAT+GGG + chr2_4:11177662-11177681 None:intergenic 10.0%
!! AATTAAAACTTAAAAACTTA+TGG + chr2_4:11177663-11177682 None:intergenic 10.0%
!!! TTTTAAGTTTTAATTTATGA+TGG - chr2_4:11177668-11177687 Msa0315010:intron 10.0%
!! TATATATTAAAATACAGACT+TGG + chr2_4:11176041-11176060 None:intergenic 15.0%
!!! TCTTTTTTCATATGTATTAT+TGG - chr2_4:11176422-11176441 Msa0315010:intron 15.0%
!!! TTGTTTAAATTTGTTTCAAT+TGG - chr2_4:11176970-11176989 Msa0315010:CDS 15.0%
!!! AATATTTTCTTATCTACTTA+TGG - chr2_4:11177475-11177494 Msa0315010:intron 15.0%
!! ATTTAAAAAAGCAAATAGAA+AGG + chr2_4:11178415-11178434 None:intergenic 15.0%
!!! TATTTCATGTCATTTATTTA+TGG - chr2_4:11179058-11179077 Msa0315010:CDS 15.0%
!!! ATTCATTTGTTTGTTATTGA+TGG - chr2_4:11175002-11175021 Msa0315010:three_prime_UTR 20.0%
!! TGAGATATTCAAATTCAAAT+GGG + chr2_4:11175184-11175203 None:intergenic 20.0%
!! TTCTAATATATTCATAGGAT+AGG - chr2_4:11175424-11175443 Msa0315010:intron 20.0%
!!! TTTTAATTTTCCTGAAATCA+TGG - chr2_4:11175476-11175495 Msa0315010:intron 20.0%
!!! TTAATCCTTTAATTTGTAGT+TGG - chr2_4:11175790-11175809 Msa0315010:intron 20.0%
!! GATGATCAATTAAGTATAAA+GGG + chr2_4:11175919-11175938 None:intergenic 20.0%
!! TGATGATCAATTAAGTATAA+AGG + chr2_4:11175920-11175939 None:intergenic 20.0%
!! AACATGATATTATATTCTCA+TGG + chr2_4:11176100-11176119 None:intergenic 20.0%
!!! CATTCTTTGATGATAATATT+TGG - chr2_4:11176519-11176538 Msa0315010:CDS 20.0%
!!! TATTTCTGTTATGTTTATAG+TGG - chr2_4:11177286-11177305 Msa0315010:intron 20.0%
!!! TTTTAATACAAAGAAGGTAA+AGG - chr2_4:11177323-11177342 Msa0315010:intron 20.0%
!! GTAAGGAATAAATTTCAAAA+GGG + chr2_4:11177712-11177731 None:intergenic 20.0%
!! AGTAAGGAATAAATTTCAAA+AGG + chr2_4:11177713-11177732 None:intergenic 20.0%
!! TTAAAATATCGTATTTGACA+TGG + chr2_4:11177829-11177848 None:intergenic 20.0%
!! TTAACAAAAATACAGATGTT+TGG - chr2_4:11177845-11177864 Msa0315010:intron 20.0%
!!! TTAATTTTGACTCTAAACAT+CGG - chr2_4:11177887-11177906 Msa0315010:intron 20.0%
!!! ATCATTTTCAATTTAACTGT+TGG - chr2_4:11178283-11178302 Msa0315010:intron 20.0%
!! ATGTTTCATTAAATGTTGTT+TGG + chr2_4:11178584-11178603 None:intergenic 20.0%
!!! TTTTTTCTTTTCTTTTCTTG+AGG - chr2_4:11178628-11178647 Msa0315010:intron 20.0%
!!! ATTTTATTTACAATGTCTCA+TGG + chr2_4:11178870-11178889 None:intergenic 20.0%
!! AAAGTTGAAATTTACTTTGA+AGG - chr2_4:11178944-11178963 Msa0315010:CDS 20.0%
! GTGAGATATTCAAATTCAAA+TGG + chr2_4:11175185-11175204 None:intergenic 25.0%
!!! TTCCTAGATTTAGTTTTTAC+AGG - chr2_4:11176221-11176240 Msa0315010:intron 25.0%
!!! TCCTAGATTTAGTTTTTACA+GGG - chr2_4:11176222-11176241 Msa0315010:intron 25.0%
! CTTATGATTGACTAATACAA+TGG + chr2_4:11176300-11176319 None:intergenic 25.0%
! ATCATGTAAAACCTTAAGAT+TGG + chr2_4:11176584-11176603 None:intergenic 25.0%
! TTATTCTAAACTTCTGTGTT+TGG - chr2_4:11176795-11176814 Msa0315010:intron 25.0%
! CAAATATTTGAAGAAAGAGA+GGG + chr2_4:11176953-11176972 None:intergenic 25.0%
! ACAAATATTTGAAGAAAGAG+AGG + chr2_4:11176954-11176973 None:intergenic 25.0%
!! TGTTTCAATTGGTTAATTTG+TGG - chr2_4:11176981-11177000 Msa0315010:CDS 25.0%
! TGATAAAACTGAATATGATG+AGG + chr2_4:11177027-11177046 None:intergenic 25.0%
!!! ATTCAGTTTTATCACAATGT+AGG - chr2_4:11177033-11177052 Msa0315010:intron 25.0%
! AGATTTACTTACTTCTATTC+AGG - chr2_4:11177092-11177111 Msa0315010:intron 25.0%
!!! CAATATTTTCTGCTTTTAGA+AGG + chr2_4:11177161-11177180 None:intergenic 25.0%
! CTTCTTTGTATTAAAAGTCA+AGG + chr2_4:11177319-11177338 None:intergenic 25.0%
!! CTTGACTTTTAATACAAAGA+AGG - chr2_4:11177317-11177336 Msa0315010:intron 25.0%
!! TTGTTTCTTCAAAATTGCAA+CGG + chr2_4:11177580-11177599 None:intergenic 25.0%
!!! ATTTTGAAGAAACAATTTCG+TGG - chr2_4:11177585-11177604 Msa0315010:intron 25.0%
!! GCAAATTTGTTTGGTTAAAT+TGG - chr2_4:11178172-11178191 Msa0315010:intron 25.0%
!! TATTTTGCCTTTGAACATTT+TGG - chr2_4:11178445-11178464 Msa0315010:CDS 25.0%
!! TATGGTTATCATTTCTCTTT+TGG - chr2_4:11179076-11179095 Msa0315010:CDS 25.0%
!! TGTTTGTTATTGATGGCATT+AGG - chr2_4:11175009-11175028 Msa0315010:three_prime_UTR 30.0%
TTTAGAGAAATTGGGGAATT+GGG + chr2_4:11175123-11175142 None:intergenic 30.0%
AAAGATGAAGATAAAGGTGA+TGG + chr2_4:11175147-11175166 None:intergenic 30.0%
GAAGAGAAAGATGAAGATAA+AGG + chr2_4:11175153-11175172 None:intergenic 30.0%
!!! AGTTGTTGACACTTATTTTG+AGG - chr2_4:11175387-11175406 Msa0315010:CDS 30.0%
! TTTTCCTGAAATCATGGAAT+TGG - chr2_4:11175482-11175501 Msa0315010:intron 30.0%
AAATCATGGAATTGGAATGT+TGG - chr2_4:11175490-11175509 Msa0315010:intron 30.0%
AATCATGGAATTGGAATGTT+GGG - chr2_4:11175491-11175510 Msa0315010:intron 30.0%
! ACATGTGTTTCTATTGAATC+AGG - chr2_4:11175567-11175586 Msa0315010:intron 30.0%
TCTATTGAATCAGGAATATG+AGG - chr2_4:11175576-11175595 Msa0315010:intron 30.0%
CTATTGAATCAGGAATATGA+GGG - chr2_4:11175577-11175596 Msa0315010:intron 30.0%
TAATCCAATGATTGATAAGG+AGG + chr2_4:11175727-11175746 None:intergenic 30.0%
AGGTAATCCAATGATTGATA+AGG + chr2_4:11175730-11175749 None:intergenic 30.0%
TATCAATCATTGGATTACCT+TGG - chr2_4:11175730-11175749 Msa0315010:intron 30.0%
!! TCCTTTAATTTGTAGTTGGT+AGG - chr2_4:11175794-11175813 Msa0315010:intron 30.0%
TCCTACCAACTACAAATTAA+AGG + chr2_4:11175798-11175817 None:intergenic 30.0%
TATAAAGGGTTGTCAAATAG+CGG + chr2_4:11175905-11175924 None:intergenic 30.0%
!!! TACATGAGTTGGTTTTTTGA+GGG + chr2_4:11176186-11176205 None:intergenic 30.0%
TAAATCTAGGAAGACATTAC+GGG + chr2_4:11176213-11176232 None:intergenic 30.0%
CTAAATCTAGGAAGACATTA+CGG + chr2_4:11176214-11176233 None:intergenic 30.0%
!!! CCTAGATTTAGTTTTTACAG+GGG - chr2_4:11176223-11176242 Msa0315010:intron 30.0%
ACATATATGTATCTTAGACG+CGG - chr2_4:11176352-11176371 Msa0315010:intron 30.0%
TCACATAAGTCACAAAAGAA+AGG + chr2_4:11176379-11176398 None:intergenic 30.0%
!! TTCATTTTAGCGTATCTGTA+TGG - chr2_4:11176545-11176564 Msa0315010:intron 30.0%
!! TCATTTTAGCGTATCTGTAT+GGG - chr2_4:11176546-11176565 Msa0315010:intron 30.0%
TAATGATTCCTCCAATCTTA+AGG - chr2_4:11176570-11176589 Msa0315010:intron 30.0%
ATGTAAAACCTTAAGATTGG+AGG + chr2_4:11176581-11176600 None:intergenic 30.0%
CCATTATCGTTACAATCATA+AGG + chr2_4:11176895-11176914 None:intergenic 30.0%
CCTTATGATTGTAACGATAA+TGG - chr2_4:11176892-11176911 Msa0315010:intron 30.0%
!! ATTGGTTAATTTGTGGCATT+AGG - chr2_4:11176988-11177007 Msa0315010:CDS 30.0%
!! TTAATGGAACTTTGAAATCC+TGG + chr2_4:11177253-11177272 None:intergenic 30.0%
TCAAAGTTCCATTAATCTTG+TGG - chr2_4:11177258-11177277 Msa0315010:CDS 30.0%
ATAACCAACCACAAGATTAA+TGG + chr2_4:11177269-11177288 None:intergenic 30.0%
ACACACTTACTATTTAGAGA+AGG - chr2_4:11177349-11177368 Msa0315010:intron 30.0%
CACACTTACTATTTAGAGAA+GGG - chr2_4:11177350-11177369 Msa0315010:intron 30.0%
ACACTTACTATTTAGAGAAG+GGG - chr2_4:11177351-11177370 Msa0315010:intron 30.0%
ACTGAATCTCATACATTATG+AGG - chr2_4:11177400-11177419 Msa0315010:intron 30.0%
! TTTATGATGGAGACCATAAT+TGG - chr2_4:11177681-11177700 Msa0315010:intron 30.0%
TGACATGGACAAAATTCATA+TGG + chr2_4:11177814-11177833 None:intergenic 30.0%
! TAAAGAGTAGCTTTTGTGAT+AGG - chr2_4:11177925-11177944 Msa0315010:intron 30.0%
!! GACATGATTTTGAAAGGAAT+TGG + chr2_4:11178047-11178066 None:intergenic 30.0%
AGATATTTGAGTGTGTGTTT+GGG + chr2_4:11178077-11178096 None:intergenic 30.0%
AAAAAGTTCGAGAAATTCAC+AGG - chr2_4:11178514-11178533 Msa0315010:CDS 30.0%
!! AACTTTTGAGTGAGATCTTT+GGG - chr2_4:11178815-11178834 Msa0315010:intron 30.0%
TCAAGGTATAATACTACACA+AGG - chr2_4:11178983-11179002 Msa0315010:CDS 30.0%
! TTGTTATTGATGGCATTAGG+AGG - chr2_4:11175012-11175031 Msa0315010:three_prime_UTR 35.0%
AAACGGTGTAAATGTGTTAG+TGG + chr2_4:11175072-11175091 None:intergenic 35.0%
! CTTTAGAGAAATTGGGGAAT+TGG + chr2_4:11175124-11175143 None:intergenic 35.0%
!! TGATGGCTTTAGAGAAATTG+GGG + chr2_4:11175130-11175149 None:intergenic 35.0%
!! GTGATGGCTTTAGAGAAATT+GGG + chr2_4:11175131-11175150 None:intergenic 35.0%
ATCTTCATCTTTCTCTTCCA+TGG - chr2_4:11175155-11175174 Msa0315010:three_prime_UTR 35.0%
ATTGAAAGAGAAGGAGAAGA+AGG + chr2_4:11175213-11175232 None:intergenic 35.0%
TCTTCTCCTTCTCTTTCAAT+TGG - chr2_4:11175213-11175232 Msa0315010:three_prime_UTR 35.0%
TGTTGTCCAATTGAAAGAGA+AGG + chr2_4:11175222-11175241 None:intergenic 35.0%
CATTCCAATTCCATGATTTC+AGG + chr2_4:11175489-11175508 None:intergenic 35.0%
! TATGAGGGTAGTCAAGTTTT+TGG - chr2_4:11175592-11175611 Msa0315010:CDS 35.0%
TACTGATCATCATGAAGAGT+TGG - chr2_4:11175627-11175646 Msa0315010:CDS 35.0%
! TCATGAAGAGTTGGTTCAAT+TGG - chr2_4:11175636-11175655 Msa0315010:intron 35.0%
! CATGAAGAGTTGGTTCAATT+GGG - chr2_4:11175637-11175656 Msa0315010:intron 35.0%
! GTATTAGTCCTGCTTTGAAT+TGG - chr2_4:11175659-11175678 Msa0315010:intron 35.0%
CAATGACATAGGGAAACTTA+TGG + chr2_4:11175696-11175715 None:intergenic 35.0%
! CATTGTCAATTGCTGATTGT+AGG - chr2_4:11175829-11175848 Msa0315010:intron 35.0%
ATTTGACAACAATGCCACAA+TGG - chr2_4:11175965-11175984 Msa0315010:intron 35.0%
!!! GTACATGAGTTGGTTTTTTG+AGG + chr2_4:11176187-11176206 None:intergenic 35.0%
CCCCTGTAAAAACTAAATCT+AGG + chr2_4:11176226-11176245 None:intergenic 35.0%
!!! TTTAGTTTTTACAGGGGTGT+TGG - chr2_4:11176229-11176248 Msa0315010:intron 35.0%
ATGCTTGCTCAAAATTCTCT+TGG - chr2_4:11176481-11176500 Msa0315010:CDS 35.0%
TGCTTGCTCAAAATTCTCTT+GGG - chr2_4:11176482-11176501 Msa0315010:CDS 35.0%
!! CATTTTAGCGTATCTGTATG+GGG - chr2_4:11176547-11176566 Msa0315010:intron 35.0%
TAACCGTGATATGAGAATTC+AGG + chr2_4:11176702-11176721 None:intergenic 35.0%
CTAAATGCTGTATTACTGCA+AGG + chr2_4:11176737-11176756 None:intergenic 35.0%
CTTGCAGTAATACAGCATTT+AGG - chr2_4:11176735-11176754 Msa0315010:CDS 35.0%
!! CAGCATTTAGGATTTTGCTT+AGG - chr2_4:11176747-11176766 Msa0315010:CDS 35.0%
TTTAGAAGGACATCAGTTCT+CGG + chr2_4:11177147-11177166 None:intergenic 35.0%
GAAAATATTGTGCTCGAGTT+TGG - chr2_4:11177171-11177190 Msa0315010:intron 35.0%
!!! GGCAAATTGTGGTTTTGAAA+AGG + chr2_4:11177232-11177251 None:intergenic 35.0%
TTTCAAAACCACAATTTGCC+AGG - chr2_4:11177232-11177251 Msa0315010:CDS 35.0%
! TTTGAAATCCTGGCAAATTG+TGG + chr2_4:11177243-11177262 None:intergenic 35.0%
AGTTCCATTAATCTTGTGGT+TGG - chr2_4:11177262-11177281 Msa0315010:CDS 35.0%
GTTGAACATTTCGTCTAATG+TGG - chr2_4:11177524-11177543 Msa0315010:intron 35.0%
! TAATGTGGCTTTTCTAAACC+AGG - chr2_4:11177539-11177558 Msa0315010:intron 35.0%
! ATTTCGTGGACGAATTTTCT+TGG - chr2_4:11177599-11177618 Msa0315010:intron 35.0%
! TTTCGTGGACGAATTTTCTT+GGG - chr2_4:11177600-11177619 Msa0315010:intron 35.0%
CAAAAGGGAAGAACCAATTA+TGG + chr2_4:11177697-11177716 None:intergenic 35.0%
!! CAAGTAAGTTGATCTTCACT+CGG + chr2_4:11177761-11177780 None:intergenic 35.0%
GATCAACTTACTTGAAGAGT+TGG - chr2_4:11177767-11177786 Msa0315010:intron 35.0%
GATGTTTGGTTATAAGTGTC+AGG - chr2_4:11177859-11177878 Msa0315010:intron 35.0%
! GAGCAAGACATGATTTTGAA+AGG + chr2_4:11178053-11178072 None:intergenic 35.0%
GAGATATTTGAGTGTGTGTT+TGG + chr2_4:11178078-11178097 None:intergenic 35.0%
TCATCACATGATTCAACAGT+TGG + chr2_4:11178144-11178163 None:intergenic 35.0%
! ATCATGCAGGCAAATTTGTT+TGG - chr2_4:11178163-11178182 Msa0315010:intron 35.0%
AAAGAAAGACACAACTCAAG+AGG + chr2_4:11178391-11178410 None:intergenic 35.0%
GGAATGATGCTTTCACAATT+AGG + chr2_4:11178666-11178685 None:intergenic 35.0%
CCTGCGAACAAAAATTACAA+AGG + chr2_4:11178687-11178706 None:intergenic 35.0%
! CCTTTGTAATTTTTGTTCGC+AGG - chr2_4:11178684-11178703 Msa0315010:intron 35.0%
TTGTTCAATCTCTTACCAAG+AGG + chr2_4:11178720-11178739 None:intergenic 35.0%
CAAAGATCTCACTCAAAAGT+TGG + chr2_4:11178816-11178835 None:intergenic 35.0%
!! CAACTTTTGAGTGAGATCTT+TGG - chr2_4:11178814-11178833 Msa0315010:intron 35.0%
!! ACTTTTGAGTGAGATCTTTG+GGG - chr2_4:11178816-11178835 Msa0315010:intron 35.0%
! AACTTTTGCTTCATGTAGAG+TGG + chr2_4:11178930-11178949 None:intergenic 35.0%
GTGAACAATGAACATTGTCA+AGG - chr2_4:11178966-11178985 Msa0315010:CDS 35.0%
!! GCATGAAGAGAGTGTTGAAA+TGG + chr2_4:11175044-11175063 None:intergenic 40.0%
GGTGTAAATGTGTTAGTGGT+TGG + chr2_4:11175068-11175087 None:intergenic 40.0%
AGAAGAAATGGGGGTTGAAA+CGG + chr2_4:11175089-11175108 None:intergenic 40.0%
TGGTGGAGTTGAGAAGAAAT+GGG + chr2_4:11175100-11175119 None:intergenic 40.0%
!! GGTGATGGCTTTAGAGAAAT+TGG + chr2_4:11175132-11175151 None:intergenic 40.0%
CAAATTCAAATGGGTAGCCA+TGG + chr2_4:11175175-11175194 None:intergenic 40.0%
CAACATGACCTTCTAATCGT+TGG - chr2_4:11175237-11175256 Msa0315010:three_prime_UTR 40.0%
! GATTTGGTCCAATTCAAAGC+AGG + chr2_4:11175670-11175689 None:intergenic 40.0%
GGGAAACTTATGGTCAGATT+TGG + chr2_4:11175686-11175705 None:intergenic 40.0%
GGAGCACATACAATGACATA+GGG + chr2_4:11175706-11175725 None:intergenic 40.0%
! AGGAGCACATACAATGACAT+AGG + chr2_4:11175707-11175726 None:intergenic 40.0%
TGCTCCTCCTTATCAATCAT+TGG - chr2_4:11175720-11175739 Msa0315010:intron 40.0%
! TGGATTACCTTGGTGATCTT+AGG - chr2_4:11175740-11175759 Msa0315010:intron 40.0%
TGATCTTAGGTGAGCAATCT+TGG - chr2_4:11175753-11175772 Msa0315010:intron 40.0%
GTGGCATTGTTGTCAAATAG+TGG + chr2_4:11175963-11175982 None:intergenic 40.0%
AACGCAGCATTATACCATTG+TGG + chr2_4:11175982-11176001 None:intergenic 40.0%
ATAATGCTGCGTTTGTGAGT+TGG - chr2_4:11175989-11176008 Msa0315010:intron 40.0%
TAATGCTGCGTTTGTGAGTT+GGG - chr2_4:11175990-11176009 Msa0315010:intron 40.0%
!!! TTTGTGAGTTGGGTTTTGGA+TGG - chr2_4:11176000-11176019 Msa0315010:intron 40.0%
!!! TTGTGAGTTGGGTTTTGGAT+GGG - chr2_4:11176001-11176020 Msa0315010:intron 40.0%
! TTTGGATGGGAAGATTTTCG+AGG - chr2_4:11176014-11176033 Msa0315010:intron 40.0%
! TTGGATGGGAAGATTTTCGA+GGG - chr2_4:11176015-11176034 Msa0315010:intron 40.0%
AGGAGGGTAATCTAACAGAA+CGG + chr2_4:11176682-11176701 None:intergenic 40.0%
CGTGATATGAGAATTCAGGA+GGG + chr2_4:11176698-11176717 None:intergenic 40.0%
CCTCCTGAATTCTCATATCA+CGG - chr2_4:11176696-11176715 Msa0315010:intron 40.0%
! CGATAATGGTTTATGCGATG+AGG - chr2_4:11176906-11176925 Msa0315010:intron 40.0%
TTAGAAGGACATCAGTTCTC+GGG + chr2_4:11177146-11177165 None:intergenic 40.0%
AATATTGTGCTCGAGTTTGG+TGG - chr2_4:11177174-11177193 Msa0315010:intron 40.0%
ATGAGATTCAGTACGTGATC+AGG + chr2_4:11177392-11177411 None:intergenic 40.0%
TATCACACCATCAGACATCA+GGG + chr2_4:11177440-11177459 None:intergenic 40.0%
TTATCACACCATCAGACATC+AGG + chr2_4:11177441-11177460 None:intergenic 40.0%
CTTCAAAATTGCAACGGAGA+GGG + chr2_4:11177574-11177593 None:intergenic 40.0%
TCTTCAAAATTGCAACGGAG+AGG + chr2_4:11177575-11177594 None:intergenic 40.0%
GTGATAATCATCCTTTGTCC+AGG - chr2_4:11177625-11177644 Msa0315010:intron 40.0%
AATCATCCTTTGTCCAGGTT+AGG - chr2_4:11177630-11177649 Msa0315010:intron 40.0%
AAATCACCTAACCTGGACAA+AGG + chr2_4:11177639-11177658 None:intergenic 40.0%
TTATGGGAAATCACCTAACC+TGG + chr2_4:11177646-11177665 None:intergenic 40.0%
GTATGGTGATAGCTAGAGTA+AGG + chr2_4:11177729-11177748 None:intergenic 40.0%
GAATCATGTGATGATCATGC+AGG - chr2_4:11178150-11178169 Msa0315010:intron 40.0%
!! TTGCCTTTGAACATTTTGGC+AGG - chr2_4:11178449-11178468 Msa0315010:CDS 40.0%
TTGCCTGCCAAAATGTTCAA+AGG + chr2_4:11178455-11178474 None:intergenic 40.0%
! TTTTGGCAGGCAAGAATTGA+TGG - chr2_4:11178462-11178481 Msa0315010:CDS 40.0%
ATGGATCTAGTCGACAAAAG+TGG - chr2_4:11178481-11178500 Msa0315010:CDS 40.0%
TGGATCTAGTCGACAAAAGT+GGG - chr2_4:11178482-11178501 Msa0315010:CDS 40.0%
TCAAAAACTCGCCAAGAAGT+TGG - chr2_4:11178741-11178760 Msa0315010:intron 40.0%
CAAAAACTCGCCAAGAAGTT+GGG - chr2_4:11178742-11178761 Msa0315010:intron 40.0%
! TGAGCAAAGCTAGAGTACTT+CGG + chr2_4:11178774-11178793 None:intergenic 40.0%
! AAGTTGGTCATAGAGTCTCA+AGG + chr2_4:11178800-11178819 None:intergenic 40.0%
GTGGAGTTGAGAAGAAATGG+GGG + chr2_4:11175098-11175117 None:intergenic 45.0%
GGTGGAGTTGAGAAGAAATG+GGG + chr2_4:11175099-11175118 None:intergenic 45.0%
! GTGGTGGAGTTGAGAAGAAA+TGG + chr2_4:11175101-11175120 None:intergenic 45.0%
AGAGAAATTGGGGAATTGGG+TGG + chr2_4:11175120-11175139 None:intergenic 45.0%
TTGCTCACCTAAGATCACCA+AGG + chr2_4:11175750-11175769 None:intergenic 45.0%
!! TGCGTTTGTGAGTTGGGTTT+TGG - chr2_4:11175996-11176015 Msa0315010:intron 45.0%
TTACGGGTGTGTACATGAGT+TGG + chr2_4:11176197-11176216 None:intergenic 45.0%
TGTTGGTGCAGCTGTTGTAA+GGG - chr2_4:11176246-11176265 Msa0315010:intron 45.0%
CCGTGATATGAGAATTCAGG+AGG + chr2_4:11176699-11176718 None:intergenic 45.0%
! GTTTGGAGTGTCAACCATTC+AGG - chr2_4:11176812-11176831 Msa0315010:intron 45.0%
ATACTCCAGTCGTGCCAATT+GGG - chr2_4:11177115-11177134 Msa0315010:intron 45.0%
TTGATTGCCCTGATGTCTGA+TGG - chr2_4:11177430-11177449 Msa0315010:intron 45.0%
!! ACTTGAAGAGTTGGCCTTCA+CGG - chr2_4:11177776-11177795 Msa0315010:intron 45.0%
! TGGTCGTGTAAAGCTGACTT+TGG + chr2_4:11178027-11178046 None:intergenic 45.0%
AAGACACAACTCAAGAGGTG+AGG + chr2_4:11178386-11178405 None:intergenic 45.0%
GAAATTGGGGAATTGGGTGG+TGG + chr2_4:11175117-11175136 None:intergenic 50.0%
GACCTTCTAATCGTTGGTCC+TGG - chr2_4:11175243-11175262 Msa0315010:three_prime_UTR 50.0%
CACCAGGACCAACGATTAGA+AGG + chr2_4:11175248-11175267 None:intergenic 50.0%
ATCGTTGGTCCTGGTGTTCT+TGG - chr2_4:11175252-11175271 Msa0315010:three_prime_UTR 50.0%
TCCTGGTGTTCTTGGTCGTT+TGG - chr2_4:11175260-11175279 Msa0315010:three_prime_UTR 50.0%
ACCAAACGACCAAGAACACC+AGG + chr2_4:11175264-11175283 None:intergenic 50.0%
GTCGTTTGGTCGCTCATCAA+TGG - chr2_4:11175274-11175293 Msa0315010:three_prime_UTR 50.0%
GTTTGGTCGCTCATCAATGG+CGG - chr2_4:11175277-11175296 Msa0315010:three_prime_UTR 50.0%
! GTGTTGGTGCAGCTGTTGTA+AGG - chr2_4:11176245-11176264 Msa0315010:intron 50.0%
GCAGAATGCTGGAATGGAGA+AGG - chr2_4:11176841-11176860 Msa0315010:intron 50.0%
GATACTCCAGTCGTGCCAAT+TGG - chr2_4:11177114-11177133 Msa0315010:intron 50.0%
! TGTGCTCGAGTTTGGTGGTT+CGG - chr2_4:11177179-11177198 Msa0315010:intron 50.0%
! GGTTCGGTTGTTAGACTGTC+TGG - chr2_4:11177195-11177214 Msa0315010:intron 50.0%
TCACTCGGCGTATGTACGTA+TGG + chr2_4:11177746-11177765 None:intergenic 50.0%
GCAGGAACTGATGATCCTCT+TGG - chr2_4:11178702-11178721 Msa0315010:intron 50.0%
AAACTCGCCAAGAAGTTGGG+TGG - chr2_4:11178745-11178764 Msa0315010:intron 50.0%
AACTCGCCAAGAAGTTGGGT+GGG - chr2_4:11178746-11178765 Msa0315010:intron 50.0%
! GGAGTGTCAACCATTCAGGC+AGG - chr2_4:11176816-11176835 Msa0315010:intron 55.0%
CATTCTGCAGCCTGCCTGAA+TGG + chr2_4:11176829-11176848 None:intergenic 55.0%
CAGGCTGCAGAATGCTGGAA+TGG - chr2_4:11176835-11176854 Msa0315010:intron 55.0%
TCAGGCAGGCTGCAGAATGC+TGG - chr2_4:11176830-11176849 Msa0315010:intron 60.0%
CTCCAGTCGTGCCAATTGGG+AGG - chr2_4:11177118-11177137 Msa0315010:intron 60.0%
CTCCTCCCAATTGGCACGAC+TGG + chr2_4:11177123-11177142 None:intergenic 60.0%
GTTCTCGGGCTCCTCCCAAT+TGG + chr2_4:11177132-11177151 None:intergenic 60.0%
!! AGTTGGCCTTCACGGCGTGA+CGG - chr2_4:11177784-11177803 Msa0315010:intron 60.0%
TCGGCTCCCACCCAACTTCT+TGG + chr2_4:11178755-11178774 None:intergenic 60.0%
GGTCGCTCATCAATGGCGGC+AGG - chr2_4:11175281-11175300 Msa0315010:three_prime_UTR 65.0%
CGGAGAGGGAAGCTGCATCC+TGG + chr2_4:11177560-11177579 None:intergenic 65.0%
!! GTTGGCCTTCACGGCGTGAC+GGG - chr2_4:11177785-11177804 Msa0315010:intron 65.0%
GGTCTCCCGTCACGCCGTGA+AGG + chr2_4:11177793-11177812 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 11175001 11179123 11175001 ID=Msa0315010;Name=Msa0315010
chr2_4 mRNA 11175001 11179123 11175001 ID=Msa0315010-mRNA-1;Parent=Msa0315010;Name=Msa0315010-mRNA-1;_AED=0.07;_eAED=0.07;_QI=20|0.85|0.75|1|0.71|0.75|8|311|323
chr2_4 exon 11175001 11175418 11175001 ID=Msa0315010-mRNA-1:exon:4302;Parent=Msa0315010-mRNA-1
chr2_4 exon 11175589 11175653 11175589 ID=Msa0315010-mRNA-1:exon:4301;Parent=Msa0315010-mRNA-1
chr2_4 exon 11176478 11176563 11176478 ID=Msa0315010-mRNA-1:exon:4300;Parent=Msa0315010-mRNA-1
chr2_4 exon 11176703 11176785 11176703 ID=Msa0315010-mRNA-1:exon:4299;Parent=Msa0315010-mRNA-1
chr2_4 exon 11176929 11177010 11176929 ID=Msa0315010-mRNA-1:exon:4298;Parent=Msa0315010-mRNA-1
chr2_4 exon 11177197 11177290 11177197 ID=Msa0315010-mRNA-1:exon:4297;Parent=Msa0315010-mRNA-1
chr2_4 exon 11178363 11178535 11178363 ID=Msa0315010-mRNA-1:exon:4296;Parent=Msa0315010-mRNA-1
chr2_4 exon 11178822 11179123 11178822 ID=Msa0315010-mRNA-1:exon:4295;Parent=Msa0315010-mRNA-1
chr2_4 five_prime_UTR 11179104 11179123 11179104 ID=Msa0315010-mRNA-1:five_prime_utr;Parent=Msa0315010-mRNA-1
chr2_4 CDS 11178822 11179103 11178822 ID=Msa0315010-mRNA-1:cds;Parent=Msa0315010-mRNA-1
chr2_4 CDS 11178363 11178535 11178363 ID=Msa0315010-mRNA-1:cds;Parent=Msa0315010-mRNA-1
chr2_4 CDS 11177197 11177290 11177197 ID=Msa0315010-mRNA-1:cds;Parent=Msa0315010-mRNA-1
chr2_4 CDS 11176929 11177010 11176929 ID=Msa0315010-mRNA-1:cds;Parent=Msa0315010-mRNA-1
chr2_4 CDS 11176703 11176785 11176703 ID=Msa0315010-mRNA-1:cds;Parent=Msa0315010-mRNA-1
chr2_4 CDS 11176478 11176563 11176478 ID=Msa0315010-mRNA-1:cds;Parent=Msa0315010-mRNA-1
chr2_4 CDS 11175589 11175653 11175589 ID=Msa0315010-mRNA-1:cds;Parent=Msa0315010-mRNA-1
chr2_4 CDS 11175312 11175418 11175312 ID=Msa0315010-mRNA-1:cds;Parent=Msa0315010-mRNA-1
chr2_4 three_prime_UTR 11175001 11175311 11175001 ID=Msa0315010-mRNA-1:three_prime_utr;Parent=Msa0315010-mRNA-1
Gene Sequence

>Msa0315010

ATGGCATTAGGAGGAATTATCCATTTCAACACTCTCTTCATGCACCAACCACTAACACATTTACACCGTTTCAACCCCCATTTCTTCTCAACTCCACCACCCAATTCCCCAATTTCTCTAAAGCCATCACCTTTATCTTCATCTTTCTCTTCCATGGCTACCCATTTGAATTTGAATATCTCACAATTGCCTTCTTCTCCTTCTCTTTCAATTGGACAACATGACCTTCTAATCGTTGGTCCTGGTGTTCTTGGTCGTTTGGTCGCTCATCAATGGCGGCAGGAATATGAGGGTAGTCAAGTTTTTGGACAGACAATTACTACTGATCATCATGAAGAGTTGGTTCAATTGGGTATTAGTCCTGCTTTGAATTGGACCAAATCTGACCATAAGTTTCCCTATGTCATTGTATGTGCTCCTCCTTATCAATCATTGGATTACCTTGGTGATCTTAGGCAGGCTGCAGAATGCTGGAATGGAGAAGGTTCTTTTCTGTATACATCAAGTTCTGCTCCTTATGATTGTAACGATAATGGTTTATGCGATGAGGATACTCCAGTCGTGCCAATTGGGAGGAGCCCGAGAACTGATGTCCTTCTAAAAGCAGAAAATATTGTGCTCGAGTTTGGTGGTAAAGGTGCACACACTTACTATTTAGAGAAGGGGATCGTTGAATCTAGACCTGATCACGTACTGAATCTCATACATTATGAGGATGCAGCTTCCCTCTCCGTTGCAATTTTGAAGAAACAATTTCGTGGACGAATTTTCTTGGGTTGTGATAATCATCCTTTGTCCAGGCAAGAATTGATGGATCTAGTCGACAAAAGTGGGAAGTTCAGTAAAAAGTTCGAGAAATTCACAGGAACTGATGATCCTCTTGGTAAGAGATTGAACAACTCAAAAACTCGCCAAGAAGTTGGGTGGGAGCCGAAGTACTCTAGCTTTGCTCATTTCCTTGAGACTCTATGA

Protein sequence

>Msa0315010

MALGGIIHFNTLFMHQPLTHLHRFNPHFFSTPPPNSPISLKPSPLSSSFSSMATHLNLNISQLPSSPSLSIGQHDLLIVGPGVLGRLVAHQWRQEYEGSQVFGQTITTDHHEELVQLGISPALNWTKSDHKFPYVIVCAPPYQSLDYLGDLRQAAECWNGEGSFLYTSSSAPYDCNDNGLCDEDTPVVPIGRSPRTDVLLKAENIVLEFGGKGAHTYYLEKGIVESRPDHVLNLIHYEDAASLSVAILKKQFRGRIFLGCDNHPLSRQELMDLVDKSGKFSKKFEKFTGTDDPLGKRLNNSKTRQEVGWEPKYSSFAHFLETL*