AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1072640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1072640 MtrunA17_Chr7g0255071 96.078 255 3 2 1 251 1 252 0.0 504
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1072640 AT2G41120.1 64.641 181 56 2 76 250 79 257 4.74e-82 246

Find 69 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCTCATCCCTTCTTCTTT+AGG 0.216226 7_2:+69781325 Msa1072640:CDS
GAAAGATATTTCAGCAGTTT+TGG 0.240858 7_2:+69781843 Msa1072640:CDS
TTCACACCATTCATCATCTA+TGG 0.281172 7_2:+69781231 Msa1072640:exon
CCATGAATTAGTGTTCTTGA+TGG 0.287810 7_2:-69781565 None:intergenic
AGAAAGATCCTACCAACTTA+TGG 0.295152 7_2:+69782157 Msa1072640:CDS
CAAAATCAATGGAAAATGTT+TGG 0.326567 7_2:-69782549 None:intergenic
TTGAAATTCAGGTGCTGCTT+TGG 0.329593 7_2:-69781367 None:intergenic
AAAGGAGCTATGATGGAGTT+AGG 0.335188 7_2:+69781760 Msa1072640:CDS
AACTTAAGAAACGGTCCATT+AGG 0.336744 7_2:-69781817 None:intergenic
TATATCGTGGCTACTACTTC+AGG 0.362312 7_2:-69782457 None:intergenic
ATTTCATCACCTATTCAATC+AGG 0.383372 7_2:+69781609 Msa1072640:CDS
ATGACTATCTTGAGTCCCTT+TGG 0.389670 7_2:+69781527 Msa1072640:CDS
CTTGAGCAAGCATCTTTGAA+TGG 0.392906 7_2:+69782431 Msa1072640:three_prime_UTR
AAGGAGCTATGATGGAGTTA+GGG 0.411699 7_2:+69781761 Msa1072640:CDS
AGCTCTTTGTTGTTTCATAC+AGG 0.411815 7_2:+69781404 Msa1072640:CDS
TGAGGTATGGGTGATAAAGT+TGG 0.413176 7_2:-69781309 None:intergenic
TATTGAAAACCTGATTGAAT+AGG 0.413740 7_2:-69781618 None:intergenic
GAAAGATCCTACCAACTTAT+GGG 0.416370 7_2:+69782158 Msa1072640:CDS
CCATCAAGAACACTAATTCA+TGG 0.433044 7_2:+69781565 Msa1072640:CDS
CTCCAAGGGCAAAGCTTCCC+AGG 0.433451 7_2:+69782282 Msa1072640:CDS
TACATTGTGTTCTGCCCTCA+AGG 0.434776 7_2:+69782239 Msa1072640:CDS
CTTTGCCCTTGGAGCTTCAG+TGG 0.439060 7_2:-69782273 None:intergenic
GAAGCAGTGACTCTATTTAA+TGG 0.441092 7_2:+69781484 Msa1072640:CDS
CGCGTATATGATCTAGAACT+TGG 0.442298 7_2:+69782200 Msa1072640:CDS
ATCTAAATCTACAAAATCAA+TGG 0.445583 7_2:-69782560 None:intergenic
ACTTAAGAAACGGTCCATTA+GGG 0.450454 7_2:-69781816 None:intergenic
TGCTGAATATAGAATCATAA+AGG 0.459099 7_2:+69781742 Msa1072640:intron
AAAGAAGAAGGGATGAGGTA+TGG 0.459773 7_2:-69781322 None:intergenic
CAGCTAACTCTATCTGTGTC+TGG 0.459791 7_2:-69781876 None:intergenic
AGAAAGATGGAGTTCCCTAA+TGG 0.471693 7_2:+69781802 Msa1072640:CDS
TGCTGCTTTGGATAAGTCAC+TGG 0.477277 7_2:-69781355 None:intergenic
GAATCATAAAGGAGCTATGA+TGG 0.481422 7_2:+69781753 Msa1072640:intron
AGCCTGGGAAGCTTTGCCCT+TGG 0.483988 7_2:-69782284 None:intergenic
GATAAAGTTGGGATGAGGTA+TGG 0.498354 7_2:-69781297 None:intergenic
CTCTTCAGCATTGTGCCAAA+GGG 0.501801 7_2:-69781542 None:intergenic
TCTTTCTCAAACTTAAGAAA+CGG 0.509201 7_2:-69781826 None:intergenic
TGGCATCATTAGACCCTTGA+GGG 0.509241 7_2:-69782253 None:intergenic
AGGAAAGAAGAAGATGAAGA+TGG 0.510141 7_2:-69781262 None:intergenic
AATCGTCAAGGATCACATGC+TGG 0.512901 7_2:+69782398 Msa1072640:three_prime_UTR
GAGGTATGGGTGATAAAGTT+GGG 0.514731 7_2:-69781308 None:intergenic
AAGAAGAAGGGATGAGGTAT+GGG 0.517035 7_2:-69781321 None:intergenic
TTCTGAGGTAGCATTAAGCC+TGG 0.518926 7_2:-69782300 None:intergenic
GCTCTTCAGCATTGTGCCAA+AGG 0.529216 7_2:-69781543 None:intergenic
CAGCATATTCTCCCATAAGT+TGG 0.529568 7_2:-69782169 None:intergenic
GGATTGAAACCTAAAGAAGA+AGG 0.535314 7_2:-69781334 None:intergenic
GTATGAAACAACAAAGAGCT+TGG 0.535551 7_2:-69781401 None:intergenic
ACTATGTAAATTGAGAAAGA+TGG 0.536572 7_2:+69781789 Msa1072640:CDS
GGAATACTGCAATGTGCAGT+TGG 0.536785 7_2:+69781586 Msa1072640:CDS
GAAGAGCCATAGATGATGAA+TGG 0.538579 7_2:-69781237 None:intergenic
CTTATGGGAGAATATGCTGC+AGG 0.540524 7_2:+69782173 Msa1072640:CDS
TGATGATGTTTGTGTTGCAA+TGG 0.550109 7_2:+69782127 Msa1072640:CDS
ATCGTCAAGGATCACATGCT+GGG 0.566237 7_2:+69782399 Msa1072640:three_prime_UTR
TGGGTGATAAAGTTGGGATG+AGG 0.573129 7_2:-69781302 None:intergenic
TGATGCCACTGAAGCTCCAA+GGG 0.576853 7_2:+69782268 Msa1072640:CDS
ACATTGTGTTCTGCCCTCAA+GGG 0.584678 7_2:+69782240 Msa1072640:CDS
ATGATGCCACTGAAGCTCCA+AGG 0.592193 7_2:+69782267 Msa1072640:CDS
AACCTAAAGAAGAAGGGATG+AGG 0.592437 7_2:-69781327 None:intergenic
ATATTCTCCCATAAGTTGGT+AGG 0.594558 7_2:-69782165 None:intergenic
GATTGAAACCTAAAGAAGAA+GGG 0.606556 7_2:-69781333 None:intergenic
AGGAGCTATGATGGAGTTAG+GGG 0.608325 7_2:+69781762 Msa1072640:CDS
AGCTATGATGGAGTTAGGGG+AGG 0.617037 7_2:+69781765 Msa1072640:CDS
GTGGCATCATTAGACCCTTG+AGG 0.624422 7_2:-69782254 None:intergenic
ACACAAAGTTTAGTATATCG+TGG 0.625305 7_2:-69782470 None:intergenic
GCTATGATGGAGTTAGGGGA+GGG 0.630986 7_2:+69781766 Msa1072640:CDS
ATATGCTACAAGATGTTCTG+AGG 0.636965 7_2:-69782315 None:intergenic
TCTGAGGTAGCATTAAGCCT+GGG 0.648996 7_2:-69782299 None:intergenic
TTATGGGAGAATATGCTGCA+GGG 0.653319 7_2:+69782174 Msa1072640:CDS
CCTACTGTATAAAATCGTCA+AGG 0.659910 7_2:+69782386 Msa1072640:three_prime_UTR
GCAGTGACTCTATTTAATGG+TGG 0.669652 7_2:+69781487 Msa1072640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAAAAATTATATTTATC+AGG + chr7_2:69782507-69782526 Msa1072640:three_prime_UTR 10.0%
!! CAAAAAAAATTATATTTATC+AGG + chr7_2:69782507-69782526 Msa1072640:three_prime_UTR 10.0%
!!! AGTTTTCATTTTATTTTTAG+TGG + chr7_2:69781660-69781679 Msa1072640:intron 15.0%
!! AAAAAATTATATTTATCAGG+AGG + chr7_2:69782510-69782529 Msa1072640:three_prime_UTR 15.0%
!!! AGTTTTCATTTTATTTTTAG+TGG + chr7_2:69781660-69781679 Msa1072640:intron 15.0%
!! AAAAAATTATATTTATCAGG+AGG + chr7_2:69782510-69782529 Msa1072640:three_prime_UTR 15.0%
!! ATAAAAAATGAACGGAAATA+TGG + chr7_2:69781190-69781209 Msa1072640:five_prime_UTR 20.0%
!!! TCATTTTATTTTTAGTGGTA+TGG + chr7_2:69781665-69781684 Msa1072640:intron 20.0%
!! ATATGATACATAACATTTCA+AGG - chr7_2:69781919-69781938 None:intergenic 20.0%
!! GAATTAAATCTAATCTTGAA+TGG - chr7_2:69782045-69782064 None:intergenic 20.0%
!! ATTCACAAATGTTATATGAT+CGG + chr7_2:69782061-69782080 Msa1072640:intron 20.0%
!! ATCTAAATCTACAAAATCAA+TGG - chr7_2:69782563-69782582 None:intergenic 20.0%
!! ATAAAAAATGAACGGAAATA+TGG + chr7_2:69781190-69781209 Msa1072640:five_prime_UTR 20.0%
!!! TCATTTTATTTTTAGTGGTA+TGG + chr7_2:69781665-69781684 Msa1072640:intron 20.0%
!! ATATGATACATAACATTTCA+AGG - chr7_2:69781919-69781938 None:intergenic 20.0%
!! GAATTAAATCTAATCTTGAA+TGG - chr7_2:69782045-69782064 None:intergenic 20.0%
!! ATTCACAAATGTTATATGAT+CGG + chr7_2:69782061-69782080 Msa1072640:intron 20.0%
!! ATCTAAATCTACAAAATCAA+TGG - chr7_2:69782563-69782582 None:intergenic 20.0%
!!! ATTTCCGTTCATTTTTTATG+TGG - chr7_2:69781189-69781208 None:intergenic 25.0%
! TATTGAAAACCTGATTGAAT+AGG - chr7_2:69781621-69781640 None:intergenic 25.0%
! TGCTGAATATAGAATCATAA+AGG + chr7_2:69781742-69781761 Msa1072640:intron 25.0%
! ACTATGTAAATTGAGAAAGA+TGG + chr7_2:69781789-69781808 Msa1072640:CDS 25.0%
! TCTTTCTCAAACTTAAGAAA+CGG - chr7_2:69781829-69781848 None:intergenic 25.0%
!!! TACTGAGTTCAATTTTGATT+CGG - chr7_2:69781966-69781985 None:intergenic 25.0%
!!! AAATGTTATATGATCGGTTT+TGG + chr7_2:69782067-69782086 Msa1072640:intron 25.0%
!!! TTTTTAACTTGAATTTGAGC+AGG + chr7_2:69782101-69782120 Msa1072640:intron 25.0%
! CAAAATCAATGGAAAATGTT+TGG - chr7_2:69782552-69782571 None:intergenic 25.0%
!!! ATTTCCGTTCATTTTTTATG+TGG - chr7_2:69781189-69781208 None:intergenic 25.0%
! TATTGAAAACCTGATTGAAT+AGG - chr7_2:69781621-69781640 None:intergenic 25.0%
! TGCTGAATATAGAATCATAA+AGG + chr7_2:69781742-69781761 Msa1072640:intron 25.0%
! ACTATGTAAATTGAGAAAGA+TGG + chr7_2:69781789-69781808 Msa1072640:CDS 25.0%
! TCTTTCTCAAACTTAAGAAA+CGG - chr7_2:69781829-69781848 None:intergenic 25.0%
!!! TACTGAGTTCAATTTTGATT+CGG - chr7_2:69781966-69781985 None:intergenic 25.0%
!!! AAATGTTATATGATCGGTTT+TGG + chr7_2:69782067-69782086 Msa1072640:intron 25.0%
!!! TTTTTAACTTGAATTTGAGC+AGG + chr7_2:69782101-69782120 Msa1072640:intron 25.0%
! CAAAATCAATGGAAAATGTT+TGG - chr7_2:69782552-69782571 None:intergenic 25.0%
!!! GTTCATTTTTTATGTGGTTG+GGG - chr7_2:69781183-69781202 None:intergenic 30.0%
!!! CGTTCATTTTTTATGTGGTT+GGG - chr7_2:69781184-69781203 None:intergenic 30.0%
CCAACCACATAAAAAATGAA+CGG + chr7_2:69781182-69781201 Msa1072640:five_prime_UTR 30.0%
GATTGAAACCTAAAGAAGAA+GGG - chr7_2:69781336-69781355 None:intergenic 30.0%
!!! AGTTGTTGCTTTTGAAATTC+AGG - chr7_2:69781381-69781400 None:intergenic 30.0%
ATTTCATCACCTATTCAATC+AGG + chr7_2:69781609-69781628 Msa1072640:CDS 30.0%
!!! TTTAGTGGTATGGTTTTGTT+TGG + chr7_2:69781675-69781694 Msa1072640:intron 30.0%
! GAAAGATATTTCAGCAGTTT+TGG + chr7_2:69781843-69781862 Msa1072640:CDS 30.0%
GATACATAACATTTCAAGGT+TGG - chr7_2:69781915-69781934 None:intergenic 30.0%
ATCTAATCTTGAATGGTAAC+AGG - chr7_2:69782038-69782057 None:intergenic 30.0%
ACACAAAGTTTAGTATATCG+TGG - chr7_2:69782473-69782492 None:intergenic 30.0%
GTGACAAACAAGAAAAAGAA+AGG - chr7_2:69781151-69781170 None:intergenic 30.0%
!!! GTTCATTTTTTATGTGGTTG+GGG - chr7_2:69781183-69781202 None:intergenic 30.0%
!!! CGTTCATTTTTTATGTGGTT+GGG - chr7_2:69781184-69781203 None:intergenic 30.0%
CCAACCACATAAAAAATGAA+CGG + chr7_2:69781182-69781201 Msa1072640:five_prime_UTR 30.0%
GATTGAAACCTAAAGAAGAA+GGG - chr7_2:69781336-69781355 None:intergenic 30.0%
!!! AGTTGTTGCTTTTGAAATTC+AGG - chr7_2:69781381-69781400 None:intergenic 30.0%
ATTTCATCACCTATTCAATC+AGG + chr7_2:69781609-69781628 Msa1072640:CDS 30.0%
!!! TTTAGTGGTATGGTTTTGTT+TGG + chr7_2:69781675-69781694 Msa1072640:intron 30.0%
! GAAAGATATTTCAGCAGTTT+TGG + chr7_2:69781843-69781862 Msa1072640:CDS 30.0%
GATACATAACATTTCAAGGT+TGG - chr7_2:69781915-69781934 None:intergenic 30.0%
ATCTAATCTTGAATGGTAAC+AGG - chr7_2:69782038-69782057 None:intergenic 30.0%
ACACAAAGTTTAGTATATCG+TGG - chr7_2:69782473-69782492 None:intergenic 30.0%
!!! CCGTTCATTTTTTATGTGGT+TGG - chr7_2:69781185-69781204 None:intergenic 35.0%
! ATGGTGTGAAAAGTTTTCTC+TGG - chr7_2:69781221-69781240 None:intergenic 35.0%
TTCACACCATTCATCATCTA+TGG + chr7_2:69781231-69781250 Msa1072640:exon 35.0%
AGGAAAGAAGAAGATGAAGA+TGG - chr7_2:69781265-69781284 None:intergenic 35.0%
!! AGGTATGGTAGATAGTTTTG+AGG - chr7_2:69781285-69781304 None:intergenic 35.0%
GGATTGAAACCTAAAGAAGA+AGG - chr7_2:69781337-69781356 None:intergenic 35.0%
GTATGAAACAACAAAGAGCT+TGG - chr7_2:69781404-69781423 None:intergenic 35.0%
!! AGCTCTTTGTTGTTTCATAC+AGG + chr7_2:69781404-69781423 Msa1072640:CDS 35.0%
GAAGCAGTGACTCTATTTAA+TGG + chr7_2:69781484-69781503 Msa1072640:CDS 35.0%
CCATGAATTAGTGTTCTTGA+TGG - chr7_2:69781568-69781587 None:intergenic 35.0%
CCATCAAGAACACTAATTCA+TGG + chr7_2:69781565-69781584 Msa1072640:CDS 35.0%
GAATCATAAAGGAGCTATGA+TGG + chr7_2:69781753-69781772 Msa1072640:intron 35.0%
ACTTAAGAAACGGTCCATTA+GGG - chr7_2:69781819-69781838 None:intergenic 35.0%
AACTTAAGAAACGGTCCATT+AGG - chr7_2:69781820-69781839 None:intergenic 35.0%
! TGATGATGTTTGTGTTGCAA+TGG + chr7_2:69782127-69782146 Msa1072640:CDS 35.0%
AGAAAGATCCTACCAACTTA+TGG + chr7_2:69782157-69782176 Msa1072640:CDS 35.0%
GAAAGATCCTACCAACTTAT+GGG + chr7_2:69782158-69782177 Msa1072640:CDS 35.0%
!! ATATTCTCCCATAAGTTGGT+AGG - chr7_2:69782168-69782187 None:intergenic 35.0%
ATATGCTACAAGATGTTCTG+AGG - chr7_2:69782318-69782337 None:intergenic 35.0%
! CCTTGACGATTTTATACAGT+AGG - chr7_2:69782389-69782408 None:intergenic 35.0%
CCTACTGTATAAAATCGTCA+AGG + chr7_2:69782386-69782405 Msa1072640:three_prime_UTR 35.0%
!!! CCGTTCATTTTTTATGTGGT+TGG - chr7_2:69781185-69781204 None:intergenic 35.0%
! ATGGTGTGAAAAGTTTTCTC+TGG - chr7_2:69781221-69781240 None:intergenic 35.0%
TTCACACCATTCATCATCTA+TGG + chr7_2:69781231-69781250 Msa1072640:exon 35.0%
AGGAAAGAAGAAGATGAAGA+TGG - chr7_2:69781265-69781284 None:intergenic 35.0%
!! AGGTATGGTAGATAGTTTTG+AGG - chr7_2:69781285-69781304 None:intergenic 35.0%
GGATTGAAACCTAAAGAAGA+AGG - chr7_2:69781337-69781356 None:intergenic 35.0%
GTATGAAACAACAAAGAGCT+TGG - chr7_2:69781404-69781423 None:intergenic 35.0%
!! AGCTCTTTGTTGTTTCATAC+AGG + chr7_2:69781404-69781423 Msa1072640:CDS 35.0%
GAAGCAGTGACTCTATTTAA+TGG + chr7_2:69781484-69781503 Msa1072640:CDS 35.0%
CCATGAATTAGTGTTCTTGA+TGG - chr7_2:69781568-69781587 None:intergenic 35.0%
CCATCAAGAACACTAATTCA+TGG + chr7_2:69781565-69781584 Msa1072640:CDS 35.0%
GAATCATAAAGGAGCTATGA+TGG + chr7_2:69781753-69781772 Msa1072640:intron 35.0%
ACTTAAGAAACGGTCCATTA+GGG - chr7_2:69781819-69781838 None:intergenic 35.0%
AACTTAAGAAACGGTCCATT+AGG - chr7_2:69781820-69781839 None:intergenic 35.0%
! TGATGATGTTTGTGTTGCAA+TGG + chr7_2:69782127-69782146 Msa1072640:CDS 35.0%
AGAAAGATCCTACCAACTTA+TGG + chr7_2:69782157-69782176 Msa1072640:CDS 35.0%
GAAAGATCCTACCAACTTAT+GGG + chr7_2:69782158-69782177 Msa1072640:CDS 35.0%
!! ATATTCTCCCATAAGTTGGT+AGG - chr7_2:69782168-69782187 None:intergenic 35.0%
ATATGCTACAAGATGTTCTG+AGG - chr7_2:69782318-69782337 None:intergenic 35.0%
! CCTTGACGATTTTATACAGT+AGG - chr7_2:69782389-69782408 None:intergenic 35.0%
CCTACTGTATAAAATCGTCA+AGG + chr7_2:69782386-69782405 Msa1072640:three_prime_UTR 35.0%
!!! CATTTTTTATGTGGTTGGGG+TGG - chr7_2:69781180-69781199 None:intergenic 40.0%
GAAGAGCCATAGATGATGAA+TGG - chr7_2:69781240-69781259 None:intergenic 40.0%
GATAAAGTTGGGATGAGGTA+TGG - chr7_2:69781300-69781319 None:intergenic 40.0%
GAGGTATGGGTGATAAAGTT+GGG - chr7_2:69781311-69781330 None:intergenic 40.0%
TGAGGTATGGGTGATAAAGT+TGG - chr7_2:69781312-69781331 None:intergenic 40.0%
AAGAAGAAGGGATGAGGTAT+GGG - chr7_2:69781324-69781343 None:intergenic 40.0%
AAAGAAGAAGGGATGAGGTA+TGG - chr7_2:69781325-69781344 None:intergenic 40.0%
TACCTCATCCCTTCTTCTTT+AGG + chr7_2:69781325-69781344 Msa1072640:CDS 40.0%
AACCTAAAGAAGAAGGGATG+AGG - chr7_2:69781330-69781349 None:intergenic 40.0%
!! TTGAAATTCAGGTGCTGCTT+TGG - chr7_2:69781370-69781389 None:intergenic 40.0%
GCAGTGACTCTATTTAATGG+TGG + chr7_2:69781487-69781506 Msa1072640:CDS 40.0%
ATGACTATCTTGAGTCCCTT+TGG + chr7_2:69781527-69781546 Msa1072640:CDS 40.0%
! AAAGGAGCTATGATGGAGTT+AGG + chr7_2:69781760-69781779 Msa1072640:CDS 40.0%
! AAGGAGCTATGATGGAGTTA+GGG + chr7_2:69781761-69781780 Msa1072640:CDS 40.0%
AGAAAGATGGAGTTCCCTAA+TGG + chr7_2:69781802-69781821 Msa1072640:CDS 40.0%
CAGCATATTCTCCCATAAGT+TGG - chr7_2:69782172-69782191 None:intergenic 40.0%
TTATGGGAGAATATGCTGCA+GGG + chr7_2:69782174-69782193 Msa1072640:CDS 40.0%
! CGCGTATATGATCTAGAACT+TGG + chr7_2:69782200-69782219 Msa1072640:CDS 40.0%
CTTGAGCAAGCATCTTTGAA+TGG + chr7_2:69782431-69782450 Msa1072640:three_prime_UTR 40.0%
TATATCGTGGCTACTACTTC+AGG - chr7_2:69782460-69782479 None:intergenic 40.0%
!!! CATTTTTTATGTGGTTGGGG+TGG - chr7_2:69781180-69781199 None:intergenic 40.0%
GAAGAGCCATAGATGATGAA+TGG - chr7_2:69781240-69781259 None:intergenic 40.0%
GATAAAGTTGGGATGAGGTA+TGG - chr7_2:69781300-69781319 None:intergenic 40.0%
GAGGTATGGGTGATAAAGTT+GGG - chr7_2:69781311-69781330 None:intergenic 40.0%
TGAGGTATGGGTGATAAAGT+TGG - chr7_2:69781312-69781331 None:intergenic 40.0%
AAGAAGAAGGGATGAGGTAT+GGG - chr7_2:69781324-69781343 None:intergenic 40.0%
AAAGAAGAAGGGATGAGGTA+TGG - chr7_2:69781325-69781344 None:intergenic 40.0%
TACCTCATCCCTTCTTCTTT+AGG + chr7_2:69781325-69781344 Msa1072640:CDS 40.0%
AACCTAAAGAAGAAGGGATG+AGG - chr7_2:69781330-69781349 None:intergenic 40.0%
!! TTGAAATTCAGGTGCTGCTT+TGG - chr7_2:69781370-69781389 None:intergenic 40.0%
GCAGTGACTCTATTTAATGG+TGG + chr7_2:69781487-69781506 Msa1072640:CDS 40.0%
ATGACTATCTTGAGTCCCTT+TGG + chr7_2:69781527-69781546 Msa1072640:CDS 40.0%
! AAAGGAGCTATGATGGAGTT+AGG + chr7_2:69781760-69781779 Msa1072640:CDS 40.0%
! AAGGAGCTATGATGGAGTTA+GGG + chr7_2:69781761-69781780 Msa1072640:CDS 40.0%
AGAAAGATGGAGTTCCCTAA+TGG + chr7_2:69781802-69781821 Msa1072640:CDS 40.0%
CAGCATATTCTCCCATAAGT+TGG - chr7_2:69782172-69782191 None:intergenic 40.0%
TTATGGGAGAATATGCTGCA+GGG + chr7_2:69782174-69782193 Msa1072640:CDS 40.0%
! CGCGTATATGATCTAGAACT+TGG + chr7_2:69782200-69782219 Msa1072640:CDS 40.0%
CTTGAGCAAGCATCTTTGAA+TGG + chr7_2:69782431-69782450 Msa1072640:three_prime_UTR 40.0%
TATATCGTGGCTACTACTTC+AGG - chr7_2:69782460-69782479 None:intergenic 40.0%
TGGGTGATAAAGTTGGGATG+AGG - chr7_2:69781305-69781324 None:intergenic 45.0%
!! TGCTGCTTTGGATAAGTCAC+TGG - chr7_2:69781358-69781377 None:intergenic 45.0%
CTCTTCAGCATTGTGCCAAA+GGG - chr7_2:69781545-69781564 None:intergenic 45.0%
GGAATACTGCAATGTGCAGT+TGG + chr7_2:69781586-69781605 Msa1072640:CDS 45.0%
! AGGAGCTATGATGGAGTTAG+GGG + chr7_2:69781762-69781781 Msa1072640:CDS 45.0%
CAGCTAACTCTATCTGTGTC+TGG - chr7_2:69781879-69781898 None:intergenic 45.0%
CTTATGGGAGAATATGCTGC+AGG + chr7_2:69782173-69782192 Msa1072640:CDS 45.0%
TACATTGTGTTCTGCCCTCA+AGG + chr7_2:69782239-69782258 Msa1072640:CDS 45.0%
ACATTGTGTTCTGCCCTCAA+GGG + chr7_2:69782240-69782259 Msa1072640:CDS 45.0%
TGGCATCATTAGACCCTTGA+GGG - chr7_2:69782256-69782275 None:intergenic 45.0%
! TCTGAGGTAGCATTAAGCCT+GGG - chr7_2:69782302-69782321 None:intergenic 45.0%
!! TTCTGAGGTAGCATTAAGCC+TGG - chr7_2:69782303-69782322 None:intergenic 45.0%
AATCGTCAAGGATCACATGC+TGG + chr7_2:69782398-69782417 Msa1072640:three_prime_UTR 45.0%
ATCGTCAAGGATCACATGCT+GGG + chr7_2:69782399-69782418 Msa1072640:three_prime_UTR 45.0%
TGGGTGATAAAGTTGGGATG+AGG - chr7_2:69781305-69781324 None:intergenic 45.0%
!! TGCTGCTTTGGATAAGTCAC+TGG - chr7_2:69781358-69781377 None:intergenic 45.0%
CTCTTCAGCATTGTGCCAAA+GGG - chr7_2:69781545-69781564 None:intergenic 45.0%
GGAATACTGCAATGTGCAGT+TGG + chr7_2:69781586-69781605 Msa1072640:CDS 45.0%
! AGGAGCTATGATGGAGTTAG+GGG + chr7_2:69781762-69781781 Msa1072640:CDS 45.0%
CAGCTAACTCTATCTGTGTC+TGG - chr7_2:69781879-69781898 None:intergenic 45.0%
CTTATGGGAGAATATGCTGC+AGG + chr7_2:69782173-69782192 Msa1072640:CDS 45.0%
TACATTGTGTTCTGCCCTCA+AGG + chr7_2:69782239-69782258 Msa1072640:CDS 45.0%
ACATTGTGTTCTGCCCTCAA+GGG + chr7_2:69782240-69782259 Msa1072640:CDS 45.0%
TGGCATCATTAGACCCTTGA+GGG - chr7_2:69782256-69782275 None:intergenic 45.0%
! TCTGAGGTAGCATTAAGCCT+GGG - chr7_2:69782302-69782321 None:intergenic 45.0%
!! TTCTGAGGTAGCATTAAGCC+TGG - chr7_2:69782303-69782322 None:intergenic 45.0%
AATCGTCAAGGATCACATGC+TGG + chr7_2:69782398-69782417 Msa1072640:three_prime_UTR 45.0%
ATCGTCAAGGATCACATGCT+GGG + chr7_2:69782399-69782418 Msa1072640:three_prime_UTR 45.0%
GCTCTTCAGCATTGTGCCAA+AGG - chr7_2:69781546-69781565 None:intergenic 50.0%
! AGCTATGATGGAGTTAGGGG+AGG + chr7_2:69781765-69781784 Msa1072640:CDS 50.0%
! GCTATGATGGAGTTAGGGGA+GGG + chr7_2:69781766-69781785 Msa1072640:CDS 50.0%
GTGGCATCATTAGACCCTTG+AGG - chr7_2:69782257-69782276 None:intergenic 50.0%
ATGATGCCACTGAAGCTCCA+AGG + chr7_2:69782267-69782286 Msa1072640:CDS 50.0%
TGATGCCACTGAAGCTCCAA+GGG + chr7_2:69782268-69782287 Msa1072640:CDS 50.0%
GCTCTTCAGCATTGTGCCAA+AGG - chr7_2:69781546-69781565 None:intergenic 50.0%
! AGCTATGATGGAGTTAGGGG+AGG + chr7_2:69781765-69781784 Msa1072640:CDS 50.0%
! GCTATGATGGAGTTAGGGGA+GGG + chr7_2:69781766-69781785 Msa1072640:CDS 50.0%
GTGGCATCATTAGACCCTTG+AGG - chr7_2:69782257-69782276 None:intergenic 50.0%
ATGATGCCACTGAAGCTCCA+AGG + chr7_2:69782267-69782286 Msa1072640:CDS 50.0%
TGATGCCACTGAAGCTCCAA+GGG + chr7_2:69782268-69782287 Msa1072640:CDS 50.0%
CTTTGCCCTTGGAGCTTCAG+TGG - chr7_2:69782276-69782295 None:intergenic 55.0%
CTTTGCCCTTGGAGCTTCAG+TGG - chr7_2:69782276-69782295 None:intergenic 55.0%
CTCCAAGGGCAAAGCTTCCC+AGG + chr7_2:69782282-69782301 Msa1072640:CDS 60.0%
AGCCTGGGAAGCTTTGCCCT+TGG - chr7_2:69782287-69782306 None:intergenic 60.0%
CTCCAAGGGCAAAGCTTCCC+AGG + chr7_2:69782282-69782301 Msa1072640:CDS 60.0%
AGCCTGGGAAGCTTTGCCCT+TGG - chr7_2:69782287-69782306 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 69781149 69782626 69781149 ID=Msa1072640;Name=Msa1072640
chr7_2 mRNA 69781149 69782626 69781149 ID=Msa1072640-mRNA-1;Parent=Msa1072640;Name=Msa1072640-mRNA-1;_AED=0.08;_eAED=0.08;_QI=101|1|1|1|1|1|3|277|251
chr7_2 exon 69781149 69781630 69781149 ID=Msa1072640-mRNA-1:exon:15522;Parent=Msa1072640-mRNA-1
chr7_2 exon 69781754 69781901 69781754 ID=Msa1072640-mRNA-1:exon:15523;Parent=Msa1072640-mRNA-1
chr7_2 exon 69782123 69782626 69782123 ID=Msa1072640-mRNA-1:exon:15524;Parent=Msa1072640-mRNA-1
chr7_2 five_prime_UTR 69781149 69781249 69781149 ID=Msa1072640-mRNA-1:five_prime_utr;Parent=Msa1072640-mRNA-1
chr7_2 CDS 69781250 69781630 69781250 ID=Msa1072640-mRNA-1:cds;Parent=Msa1072640-mRNA-1
chr7_2 CDS 69781754 69781901 69781754 ID=Msa1072640-mRNA-1:cds;Parent=Msa1072640-mRNA-1
chr7_2 CDS 69782123 69782349 69782123 ID=Msa1072640-mRNA-1:cds;Parent=Msa1072640-mRNA-1
chr7_2 three_prime_UTR 69782350 69782626 69782350 ID=Msa1072640-mRNA-1:three_prime_utr;Parent=Msa1072640-mRNA-1
Gene Sequence

>Msa1072640

ATGGCTCTTCTTCCATCTTCATCTTCTTCTTTCCTCAAAACTATCTACCATACCTCATCCCAACTTTATCACCCATACCTCATCCCTTCTTCTTTAGGTTTCAATCCAGTGACTTATCCAAAGCAGCACCTGAATTTCAAAAGCAACAACTCCAAGCTCTTTGTTGTTTCATACAGGTATTTCACTAAAGAAGAAGACGAAGAAGACGACGAAGAAGAAGAGCACAACTTTGATGAAGCAGTGACTCTATTTAATGGTGGAGAGTACTACAAATGTCATGACTATCTTGAGTCCCTTTGGCACAATGCTGAAGAGCCATCAAGAACACTAATTCATGGAATACTGCAATGTGCAGTTGGATTTCATCACCTATTCAATCAGAATCATAAAGGAGCTATGATGGAGTTAGGGGAGGGACTATGTAAATTGAGAAAGATGGAGTTCCCTAATGGACCGTTTCTTAAGTTTGAGAAAGATATTTCAGCAGTTTTGGAATTTATCTACCAGACACAGATAGAGTTAGCTGCATGTAGTGATGATGTTTGTGTTGCAATGGATCAATCAGAAAGATCCTACCAACTTATGGGAGAATATGCTGCAGGGAAGCGCGTATATGATCTAGAACTTGGTCGTGATGCATCAGTGTACATTGTGTTCTGCCCTCAAGGGTCTAATGATGCCACTGAAGCTCCAAGGGCAAAGCTTCCCAGGCTTAATGCTACCTCAGAACATCTTGTAGCATATGAATACAAGTAA

Protein sequence

>Msa1072640

MALLPSSSSSFLKTIYHTSSQLYHPYLIPSSLGFNPVTYPKQHLNFKSNNSKLFVVSYRYFTKEEDEEDDEEEEHNFDEAVTLFNGGEYYKCHDYLESLWHNAEEPSRTLIHGILQCAVGFHHLFNQNHKGAMMELGEGLCKLRKMEFPNGPFLKFEKDISAVLEFIYQTQIELAACSDDVCVAMDQSERSYQLMGEYAAGKRVYDLELGRDASVYIVFCPQGSNDATEAPRAKLPRLNATSEHLVAYEYK*