AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1045950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1045950 MtrunA17_Chr7g0214751 97.917 240 5 0 1 240 1 240 2.17e-174 479
Msa1045950 MtrunA17_Chr8g0335211 30.201 149 71 5 90 237 87 203 2.98e-12 63.9
Msa1045950 MtrunA17_Chr1g0179231 31.915 141 83 3 102 235 79 213 2.17e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1045950 AT5G13410.1 73.934 211 51 1 34 240 46 256 7.01e-113 324
Msa1045950 AT5G13410.2 67.722 158 47 1 34 187 46 203 5.00e-72 219
Msa1045950 AT5G13410.3 65.493 142 43 2 34 169 46 187 1.43e-58 184
Msa1045950 AT4G19830.1 32.000 150 81 4 97 235 83 222 4.75e-13 66.6
Msa1045950 AT3G60370.1 28.671 143 70 4 95 237 114 224 1.22e-11 63.2
Msa1045950 AT3G60370.2 28.671 143 70 4 95 237 143 253 1.47e-11 63.2

Find 74 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTCTCCTTTCTTTGGTTT+TGG 0.098567 7_2:+6216311 None:intergenic
AATTAGAACACGTATTTATT+TGG 0.192325 7_2:+6218326 None:intergenic
AGTACCAGAGATTGAGATTT+AGG 0.204966 7_2:+6218161 None:intergenic
ACTACTGTCTCTCCTTTCTT+TGG 0.230123 7_2:+6216305 None:intergenic
TCTTCCATTGCTGTCATTGC+TGG 0.261109 7_2:-6217784 Msa1045950:CDS
GATTCGGTTTCTACGTAGTC+TGG 0.296521 7_2:+6216452 None:intergenic
ACCGAGAATGTTGTAGGTCT+TGG 0.306682 7_2:+6214567 None:intergenic
CTGTTGCAGGCATGTCTCTC+GGG 0.313157 7_2:-6215113 Msa1045950:CDS
GGCTACACCATAGGTTATTA+TGG 0.314573 7_2:-6215974 Msa1045950:CDS
AGAAACTAACCTGAATGTTT+TGG 0.331460 7_2:+6214334 None:intergenic
CAAGTTCCATTCAGGTAGAT+TGG 0.341541 7_2:-6216000 Msa1045950:intron
CGAATCTGGACTCCAGTATA+AGG 0.349702 7_2:-6216435 Msa1045950:intron
GCGCTTAGAGGGAAGGATTA+TGG 0.359617 7_2:-6216494 Msa1045950:CDS
GAAGAATCGGAGAGATTATC+AGG 0.361485 7_2:+6218060 None:intergenic
CATACAGTGCCTGCGCTTAG+AGG 0.369660 7_2:-6216506 Msa1045950:intron
CCTGAGAGTGATTATAATAA+AGG 0.373753 7_2:-6214594 Msa1045950:CDS
CTCTCAGGATATCCAAGTTC+TGG 0.374321 7_2:+6214609 None:intergenic
GCTGTTGCAGGCATGTCTCT+CGG 0.418797 7_2:-6215114 Msa1045950:CDS
CAGGACTTGCGACCCGGAAA+TGG 0.420506 7_2:-6216335 Msa1045950:CDS
CGTGCTGCATCACCTTATAC+TGG 0.421611 7_2:+6216423 None:intergenic
AAGTTCCATTCAGGTAGATT+GGG 0.421771 7_2:-6215999 Msa1045950:intron
CCGAGAATGTTGTAGGTCTT+GGG 0.424007 7_2:+6214568 None:intergenic
GACTACGTAGAAACCGAATC+TGG 0.424093 7_2:-6216449 Msa1045950:CDS
CTCTCCGATTCTTCTTTCTC+CGG 0.431412 7_2:-6218051 Msa1045950:intron
ATCAAAATTGTCGCATAGGC+AGG 0.436623 7_2:+6213887 None:intergenic
ATATCACCACCAAAACATTC+AGG 0.437986 7_2:-6214343 Msa1045950:intron
ACTCTTACCGAGAATGTTGT+AGG 0.441297 7_2:+6214561 None:intergenic
GAAGGATCAATCAATGATAC+TGG 0.446572 7_2:+6214170 None:intergenic
CTTATACTGGAGTCCAGATT+CGG 0.447520 7_2:+6216436 None:intergenic
CCCAAGACCTACAACATTCT+CGG 0.450933 7_2:-6214568 Msa1045950:intron
AGAAAGAGAAGCAATGGAAA+AGG 0.453395 7_2:+6218187 None:intergenic
AAATATGCAGGGTGATGATA+AGG 0.476575 7_2:-6215821 Msa1045950:intron
TTTACAGGGCCAACGAGCCT+TGG 0.477434 7_2:-6214473 Msa1045950:intron
AGGTAGAGAAAGAGAAGCAA+TGG 0.477899 7_2:+6218181 None:intergenic
TTTCTGGTTATGTTCTCCAT+AGG 0.483197 7_2:-6214132 Msa1045950:three_prime_UTR
CCTTTATTATAATCACTCTC+AGG 0.484019 7_2:+6214594 None:intergenic
AAAATACTCACAAGGTATGA+AGG 0.485375 7_2:+6214152 None:intergenic
GTACTGTACTTTGTGTTGTG+TGG 0.489766 7_2:+6218239 None:intergenic
GTCGTTTGAACGGAGAAAGA+TGG 0.491223 7_2:-6217812 Msa1045950:CDS
TCTACCTAAATCTCAATCTC+TGG 0.493829 7_2:-6218165 Msa1045950:intron
CAGTACAGAAGTTACAGTTA+TGG 0.509987 7_2:-6218222 Msa1045950:exon
AACAAAAGGCGGTTCCTTCG+AGG 0.510702 7_2:-6215927 Msa1045950:intron
ATAATTGTACCACCAGAACT+TGG 0.512580 7_2:-6214621 Msa1045950:CDS
GTACTTTGTGTTGTGTGGAA+TGG 0.513767 7_2:+6218244 None:intergenic
CTGACCGGAGAAAGAAGAAT+CGG 0.525266 7_2:+6218047 None:intergenic
TGTTGCAGGCATGTCTCTCG+GGG 0.531908 7_2:-6215112 Msa1045950:CDS
GCAACAGCCTCTTCAAAAGC+AGG 0.542551 7_2:+6215129 None:intergenic
GAAGCCCGGAATAAAACAAA+AGG 0.543558 7_2:-6215941 Msa1045950:CDS
TATGCGACCATAATAACCTA+TGG 0.545221 7_2:+6215967 None:intergenic
TTACATCAAAATTGTCGCAT+AGG 0.547571 7_2:+6213883 None:intergenic
AAATTGCAGGACTTGCGACC+CGG 0.549601 7_2:-6216341 Msa1045950:intron
GAGTCTTGTCTATCAACCCT+TGG 0.550697 7_2:+6214434 None:intergenic
ATGGTCGCATATTTGAAGCC+CGG 0.550903 7_2:-6215955 Msa1045950:CDS
AATGGCCCAAAACCAAAGAA+AGG 0.553989 7_2:-6216317 Msa1045950:CDS
GATTGGGATGGCTACACCAT+AGG 0.554754 7_2:-6215983 Msa1045950:CDS
ATACAGTGCCTGCGCTTAGA+GGG 0.556567 7_2:-6216505 Msa1045950:intron
ATTCGGTTTCTACGTAGTCT+GGG 0.563402 7_2:+6216453 None:intergenic
GTTCCTTAGCACAAAATCCA+AGG 0.568528 7_2:+6214456 None:intergenic
TAATCCTTCCCTCTAAGCGC+AGG 0.569928 7_2:+6216497 None:intergenic
AGTGCCTGCGCTTAGAGGGA+AGG 0.581188 7_2:-6216501 Msa1045950:CDS
TTTCTCCGTTCAAACGACGT+TGG 0.585440 7_2:+6217817 None:intergenic
TCCATTCAGGTAGATTGGGA+TGG 0.591083 7_2:-6215995 Msa1045950:intron
AGTTCCAGCAATGACAGCAA+TGG 0.596327 7_2:+6217780 None:intergenic
GGTAAAAGCAACGGTAAGAG+TGG 0.605043 7_2:-6217853 Msa1045950:CDS
GCACAAAATCCAAGGCTCGT+TGG 0.605057 7_2:+6214464 None:intergenic
GAGAGTGATTATAATAAAGG+TGG 0.627466 7_2:-6214591 Msa1045950:CDS
TCAGGATATCCAAGTTCTGG+TGG 0.630805 7_2:+6214612 None:intergenic
CAAAACATTCAATACCTCGA+AGG 0.640541 7_2:+6215913 None:intergenic
GCCCGGAATAAAACAAAAGG+CGG 0.648713 7_2:-6215938 Msa1045950:CDS
TCAATAACTACATACAGATG+AGG 0.653463 7_2:-6213986 Msa1045950:three_prime_UTR
AAAGAAAGGAGAGACAGTAG+TGG 0.691301 7_2:-6216303 Msa1045950:intron
GTTGCAGGCATGTCTCTCGG+GGG 0.694566 7_2:-6215111 Msa1045950:CDS
ATAACCAGAAAATACTCACA+AGG 0.721530 7_2:+6214144 None:intergenic
ATTCAAAGTAGGATCGCACG+AGG 0.729797 7_2:-6215788 Msa1045950:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCCTTAAAAAATTTAATA+TGG - chr7_2:6217400-6217419 Msa1045950:intron 10.0%
!! AAGCTATTATTAATTGAAAT+TGG + chr7_2:6215327-6215346 None:intergenic 15.0%
!! ATTTGAAAAACAACAAAATA+AGG + chr7_2:6216304-6216323 None:intergenic 15.0%
!!! TGTTAATTTATTTTATCTAG+AGG - chr7_2:6216581-6216600 Msa1045950:intron 15.0%
!!! GTTAATTTATTTTATCTAGA+GGG - chr7_2:6216582-6216601 Msa1045950:intron 15.0%
!! AAATTATAAGTGATATAACA+TGG - chr7_2:6216702-6216721 Msa1045950:intron 15.0%
!! CAGTATAATAAAATAAATTC+AGG + chr7_2:6217199-6217218 None:intergenic 15.0%
!!! CAACCATATTAAATTTTTTA+AGG + chr7_2:6217406-6217425 None:intergenic 15.0%
!! AAAAATTTGACAAATCAATT+TGG + chr7_2:6217765-6217784 None:intergenic 15.0%
!! AATTAGAACACGTATTTATT+TGG + chr7_2:6213818-6213837 None:intergenic 20.0%
!! GAAATGATAATAGTTAAGTA+TGG + chr7_2:6214052-6214071 None:intergenic 20.0%
!! TAACTATTATCATTTCTTTC+AGG - chr7_2:6214056-6214075 Msa1045950:three_prime_UTR 20.0%
!! AATCAACTTAACTTATGTAT+AGG - chr7_2:6214507-6214526 Msa1045950:intron 20.0%
!!! TGTTTTCATAAACTATCTTT+GGG - chr7_2:6214585-6214604 Msa1045950:CDS 20.0%
!!! TTATTTCTATAAACTCTCTT+GGG - chr7_2:6214843-6214862 Msa1045950:intron 20.0%
!!! TCATTAAGCTAAGTTTTTTT+AGG + chr7_2:6214872-6214891 None:intergenic 20.0%
!! TATACAATACAACAATATCA+TGG + chr7_2:6215007-6215026 None:intergenic 20.0%
!! ACGACAAATAATATAATGAA+GGG + chr7_2:6215030-6215049 None:intergenic 20.0%
!! AACGACAAATAATATAATGA+AGG + chr7_2:6215031-6215050 None:intergenic 20.0%
!! TACTCGTTCTAATTTAAATA+GGG + chr7_2:6215357-6215376 None:intergenic 20.0%
!! ATACTCGTTCTAATTTAAAT+AGG + chr7_2:6215358-6215377 None:intergenic 20.0%
!!! GTATTTGTTTTATCATAAAC+TGG - chr7_2:6215527-6215546 Msa1045950:intron 20.0%
!! CATTATATTGAAATCTTTGT+AGG + chr7_2:6215598-6215617 None:intergenic 20.0%
!! TAGTAGTATTAATAAATTGC+AGG - chr7_2:6215787-6215806 Msa1045950:intron 20.0%
!!! CTATTGATTTTATAGTCAAT+TGG - chr7_2:6215882-6215901 Msa1045950:intron 20.0%
!!! ATACTGATTCTAAATCAAAT+TGG - chr7_2:6215949-6215968 Msa1045950:CDS 20.0%
!! TTATAATTTCGTTATAGAAC+AGG + chr7_2:6216691-6216710 None:intergenic 20.0%
!! ATAAATTCTTACTCTTGATT+TGG - chr7_2:6217227-6217246 Msa1045950:intron 20.0%
!! TAAATTCTTACTCTTGATTT+GGG - chr7_2:6217228-6217247 Msa1045950:intron 20.0%
!!! ATTTTAATTACGGAAATTCA+GGG + chr7_2:6217269-6217288 None:intergenic 20.0%
!!! AATTTTAATTACGGAAATTC+AGG + chr7_2:6217270-6217289 None:intergenic 20.0%
!! TTTAATATGGTTGAAAAGTA+AGG - chr7_2:6217413-6217432 Msa1045950:intron 20.0%
!!! ACAATTTTGATGTAATATTC+CGG - chr7_2:6218266-6218285 Msa1045950:five_prime_UTR 20.0%
! ATTTCATTAATGTCGAGTTT+GGG + chr7_2:6214167-6214186 None:intergenic 25.0%
! AAATATGCTATTAACTTTGC+TGG + chr7_2:6214218-6214237 None:intergenic 25.0%
!!! TAATATCTAACCGTTTTTTC+AGG - chr7_2:6214267-6214286 Msa1045950:intron 25.0%
!! CTGTTTTCATAAACTATCTT+TGG - chr7_2:6214584-6214603 Msa1045950:CDS 25.0%
! ACTTATTTGAGCTTATGTAT+TGG - chr7_2:6214747-6214766 Msa1045950:intron 25.0%
!!! CTTATTTCTATAAACTCTCT+TGG - chr7_2:6214842-6214861 Msa1045950:intron 25.0%
!! ATTAAGTTGTTTATCCAAAC+AGG - chr7_2:6214980-6214999 Msa1045950:intron 25.0%
! TCCATTATACTAAACAATGT+AGG - chr7_2:6215098-6215117 Msa1045950:intron 25.0%
! TCCTACATTGTTTAGTATAA+TGG + chr7_2:6215102-6215121 None:intergenic 25.0%
! ACTCGTTCTAATTTAAATAG+GGG + chr7_2:6215356-6215375 None:intergenic 25.0%
!!! CTTTTTCTTATTTTACTACG+TGG + chr7_2:6215572-6215591 None:intergenic 25.0%
!!! TTCTTTGAAATGAGTTTTGA+TGG - chr7_2:6216029-6216048 Msa1045950:intron 25.0%
!!! TCTTTGAAATGAGTTTTGAT+GGG - chr7_2:6216030-6216049 Msa1045950:intron 25.0%
!!! TTGTTGTTTTTCAAATATGC+AGG - chr7_2:6216308-6216327 Msa1045950:CDS 25.0%
!!! TGTTGTTTTTCAAATATGCA+GGG - chr7_2:6216309-6216328 Msa1045950:CDS 25.0%
!!! GACTTTTTCAAATTCAAAGT+AGG - chr7_2:6216342-6216361 Msa1045950:intron 25.0%
! ATATTAATCATTACATGACG+AGG + chr7_2:6216386-6216405 None:intergenic 25.0%
! ATAGTTCCTTCAATTTCAAT+AGG - chr7_2:6216404-6216423 Msa1045950:intron 25.0%
! AAAGATCCTATTGAAATTGA+AGG + chr7_2:6216413-6216432 None:intergenic 25.0%
!! TTCAATAGGATCTTTTCTAT+AGG - chr7_2:6216418-6216437 Msa1045950:intron 25.0%
! ATATAAAACTGAACCACAAA+GGG + chr7_2:6216612-6216631 None:intergenic 25.0%
! TATATAAAACTGAACCACAA+AGG + chr7_2:6216613-6216632 None:intergenic 25.0%
! AATTTGAGTGCTTAATATGT+TGG + chr7_2:6216916-6216935 None:intergenic 25.0%
! AGAAACTGTAATTCAGTAAA+TGG + chr7_2:6217138-6217157 None:intergenic 25.0%
! GTTTCTATCAATTCAAACTT+TGG - chr7_2:6217152-6217171 Msa1045950:intron 25.0%
! ATCAATTCAAACTTTGGATT+TGG - chr7_2:6217158-6217177 Msa1045950:intron 25.0%
! TCAATTCAAACTTTGGATTT+GGG - chr7_2:6217159-6217178 Msa1045950:intron 25.0%
! AGAGTAAGAATTTATAGAAG+TGG + chr7_2:6217222-6217241 None:intergenic 25.0%
!! AAATTCTTACTCTTGATTTG+GGG - chr7_2:6217229-6217248 Msa1045950:intron 25.0%
!!! GCGATTGACAATTTTAATTA+CGG + chr7_2:6217279-6217298 None:intergenic 25.0%
! TAATTAAAATTGTCAATCGC+TGG - chr7_2:6217279-6217298 Msa1045950:intron 25.0%
! AATTAAAATTGTCAATCGCT+GGG - chr7_2:6217280-6217299 Msa1045950:intron 25.0%
! ATGTACTATAAAGAGATTGA+TGG - chr7_2:6217455-6217474 Msa1045950:intron 25.0%
!! CAATGTGAATATGTTTTACA+GGG - chr7_2:6217654-6217673 Msa1045950:intron 25.0%
! GAATTAATTGTAGACTTATC+TGG + chr7_2:6217941-6217960 None:intergenic 25.0%
!! ATTTCTTTTGATCACTTTGT+TGG - chr7_2:6218216-6218235 Msa1045950:exon 25.0%
! ATAAACGAACAATGAAAAAC+CGG + chr7_2:6218288-6218307 None:intergenic 25.0%
!! TTTTTCATTGTTCGTTTATC+TGG - chr7_2:6218289-6218308 Msa1045950:five_prime_UTR 25.0%
AATGAAAGAAGAATACTGAC+CGG + chr7_2:6214112-6214131 None:intergenic 30.0%
CATTTCATTAATGTCGAGTT+TGG + chr7_2:6214168-6214187 None:intergenic 30.0%
!!! GTTGCTTTTACCTGAAAAAA+CGG + chr7_2:6214280-6214299 None:intergenic 30.0%
!!! GTTTTTTCAGGTAAAAGCAA+CGG - chr7_2:6214279-6214298 Msa1045950:intron 30.0%
! ATTGCTGGAACTTTTTGTAA+AGG - chr7_2:6214372-6214391 Msa1045950:three_prime_UTR 30.0%
! ACTTTTTGTAAAGGAGGAAT+TGG - chr7_2:6214381-6214400 Msa1045950:exon 30.0%
TCAAATAAGCCAAATCAAAG+AGG - chr7_2:6214709-6214728 Msa1045950:intron 30.0%
AACATCAACAACCGAAAATT+TGG - chr7_2:6215194-6215213 Msa1045950:intron 30.0%
ACATAGTTCAAATAACCCAA+AGG - chr7_2:6215287-6215306 Msa1045950:intron 30.0%
ATATTAAGAAGTTCCGAAGA+AGG - chr7_2:6215376-6215395 Msa1045950:intron 30.0%
AGAGCGCAAAAGAAAAATTT+AGG + chr7_2:6215983-6216002 None:intergenic 30.0%
ATTTGACAACTTTACTCCTA+GGG - chr7_2:6216057-6216076 Msa1045950:intron 30.0%
ATGTTCAGAAATAATTCCCT+AGG + chr7_2:6216076-6216095 None:intergenic 30.0%
! TTTTCTATAGGTCTTGATGT+CGG - chr7_2:6216430-6216449 Msa1045950:intron 30.0%
AAGTAATGTTGAATGCAGTA+GGG - chr7_2:6216510-6216529 Msa1045950:intron 30.0%
!!! TAACATGGTTTTTTTGAGTG+AGG - chr7_2:6216717-6216736 Msa1045950:intron 30.0%
!!! CAAATTATGCCCTTATTTTC+TGG - chr7_2:6216930-6216949 Msa1045950:intron 30.0%
AATTCAGTAAATGGCATGAA+AGG + chr7_2:6217129-6217148 None:intergenic 30.0%
AAGTAAGGCAAATGTATGTT+TGG - chr7_2:6217428-6217447 Msa1045950:intron 30.0%
AGTAAGGCAAATGTATGTTT+GGG - chr7_2:6217429-6217448 Msa1045950:intron 30.0%
CCTTTATTATAATCACTCTC+AGG + chr7_2:6217550-6217569 None:intergenic 30.0%
CCTGAGAGTGATTATAATAA+AGG - chr7_2:6217547-6217566 Msa1045950:intron 30.0%
GAGAGTGATTATAATAAAGG+TGG - chr7_2:6217550-6217569 Msa1045950:intron 30.0%
! GCAATGTGAATATGTTTTAC+AGG - chr7_2:6217653-6217672 Msa1045950:intron 30.0%
! AGAAACTAACCTGAATGTTT+TGG + chr7_2:6217810-6217829 None:intergenic 30.0%
AAAATACTCACAAGGTATGA+AGG + chr7_2:6217992-6218011 None:intergenic 30.0%
ATAACCAGAAAATACTCACA+AGG + chr7_2:6218000-6218019 None:intergenic 30.0%
! TCATGATTTTTCATCACCTA+TGG + chr7_2:6218028-6218047 None:intergenic 30.0%
TCAATAACTACATACAGATG+AGG - chr7_2:6218155-6218174 Msa1045950:intron 30.0%
TTACATCAAAATTGTCGCAT+AGG + chr7_2:6218261-6218280 None:intergenic 30.0%
! AACATTTTGTGTGACATTTG+AGG - chr7_2:6218319-6218338 Msa1045950:five_prime_UTR 30.0%
!!! AAGGGAGTGTGTTTTAAAGA+TGG + chr7_2:6213861-6213880 None:intergenic 35.0%
! GGAAGTTGCTAGATTTTGAA+GGG + chr7_2:6213879-6213898 None:intergenic 35.0%
! TGGAAGTTGCTAGATTTTGA+AGG + chr7_2:6213880-6213899 None:intergenic 35.0%
CAGTACAGAAGTTACAGTTA+TGG - chr7_2:6213919-6213938 Msa1045950:three_prime_UTR 35.0%
AGAAAGAGAAGCAATGGAAA+AGG + chr7_2:6213957-6213976 None:intergenic 35.0%
TCTACCTAAATCTCAATCTC+TGG - chr7_2:6213976-6213995 Msa1045950:three_prime_UTR 35.0%
AGTACCAGAGATTGAGATTT+AGG + chr7_2:6213983-6214002 None:intergenic 35.0%
TGAATGAGTGTGTGAATTGA+AGG + chr7_2:6214026-6214045 None:intergenic 35.0%
GTTCTTTCAATCAGTCTTAG+AGG - chr7_2:6214665-6214684 Msa1045950:intron 35.0%
AAACAAGCTCCTCTTTGATT+TGG + chr7_2:6214721-6214740 None:intergenic 35.0%
! AAATCAAAGAGGAGCTTGTT+TGG - chr7_2:6214720-6214739 Msa1045950:intron 35.0%
ATAAGCACTTTGCAATGGTT+TGG - chr7_2:6214771-6214790 Msa1045950:intron 35.0%
AACAATATCATGGTCCTGTT+TGG + chr7_2:6214997-6215016 None:intergenic 35.0%
! ACACCTCTGTTCCAAATTTT+CGG + chr7_2:6215208-6215227 None:intergenic 35.0%
AACGTATGTCTATGAGGTAT+CGG - chr7_2:6215228-6215247 Msa1045950:intron 35.0%
! AGTTTGAGTTTGTAACCTCA+TGG - chr7_2:6215263-6215282 Msa1045950:intron 35.0%
! GTTTGAGTTTGTAACCTCAT+GGG - chr7_2:6215264-6215283 Msa1045950:intron 35.0%
TATTTGAACTATGTCCCATG+AGG + chr7_2:6215281-6215300 None:intergenic 35.0%
AGTTCAAATAACCCAAAGGA+AGG - chr7_2:6215291-6215310 Msa1045950:intron 35.0%
!! GTCATTTTACACCTTCCTTT+GGG + chr7_2:6215305-6215324 None:intergenic 35.0%
!!! TCTCTCCTTTCTTTGGTTTT+GGG + chr7_2:6215832-6215851 None:intergenic 35.0%
ATCTACATAGCAGACATTCT+AGG - chr7_2:6216006-6216025 Msa1045950:intron 35.0%
GATTTGACAACTTTACTCCT+AGG - chr7_2:6216056-6216075 Msa1045950:intron 35.0%
AAGTTCCATTCAGGTAGATT+GGG - chr7_2:6216142-6216161 Msa1045950:intron 35.0%
TATGCGACCATAATAACCTA+TGG + chr7_2:6216177-6216196 None:intergenic 35.0%
!!! AACCGCCTTTTGTTTTATTC+CGG + chr7_2:6216208-6216227 None:intergenic 35.0%
CAAAACATTCAATACCTCGA+AGG + chr7_2:6216231-6216250 None:intergenic 35.0%
AAATATGCAGGGTGATGATA+AGG - chr7_2:6216320-6216339 Msa1045950:CDS 35.0%
CTACTGCATTCAACATTACT+TGG + chr7_2:6216511-6216530 None:intergenic 35.0%
CAAGTAATGTTGAATGCAGT+AGG - chr7_2:6216509-6216528 Msa1045950:intron 35.0%
GAATAAGGATAAGTCCTACT+TGG - chr7_2:6216535-6216554 Msa1045950:intron 35.0%
AAGTCCTACTTGGTTATACT+AGG - chr7_2:6216545-6216564 Msa1045950:intron 35.0%
GAATCCTAGTATAACCAAGT+AGG + chr7_2:6216552-6216571 None:intergenic 35.0%
! TATTAAGCATGTGCTACTGT+TGG - chr7_2:6216636-6216655 Msa1045950:intron 35.0%
AGTTTAGTCCTAATCCCAAA+GGG + chr7_2:6216761-6216780 None:intergenic 35.0%
ATGCAGACTCCAGAAAATAA+GGG + chr7_2:6216942-6216961 None:intergenic 35.0%
! TTCATGTGCTTTGAATGTTC+AGG - chr7_2:6216984-6217003 Msa1045950:intron 35.0%
ATATAGCTAACTTCACCTAG+CGG + chr7_2:6217360-6217379 None:intergenic 35.0%
ACTATGTTTATCAGTGATGC+AGG - chr7_2:6217497-6217516 Msa1045950:intron 35.0%
ATAATTGTACCACCAGAACT+TGG - chr7_2:6217520-6217539 Msa1045950:intron 35.0%
! ATTTTGTGCTAAGGAACCAA+GGG - chr7_2:6217691-6217710 Msa1045950:intron 35.0%
!!! GTTTTGGTGGTGATATTTCA+GGG + chr7_2:6217794-6217813 None:intergenic 35.0%
!!! TGTTTTGGTGGTGATATTTC+AGG + chr7_2:6217795-6217814 None:intergenic 35.0%
ATATCACCACCAAAACATTC+AGG - chr7_2:6217798-6217817 Msa1045950:CDS 35.0%
!! AACTAACCTGAATGTTTTGG+TGG + chr7_2:6217807-6217826 None:intergenic 35.0%
!!! GTTTTTTTCCATCAGTTCAC+TGG + chr7_2:6217908-6217927 None:intergenic 35.0%
AGACTTATCTGGCAATACAA+AGG + chr7_2:6217930-6217949 None:intergenic 35.0%
GAAGGATCAATCAATGATAC+TGG + chr7_2:6217974-6217993 None:intergenic 35.0%
! CATACCTTGTGAGTATTTTC+TGG - chr7_2:6217993-6218012 Msa1045950:intron 35.0%
!! TTTCTGGTTATGTTCTCCAT+AGG - chr7_2:6218009-6218028 Msa1045950:intron 35.0%
GTACTTTGTGTTGTGTGGAA+TGG + chr7_2:6213900-6213919 None:intergenic 40.0%
GTACTGTACTTTGTGTTGTG+TGG + chr7_2:6213905-6213924 None:intergenic 40.0%
AGGTAGAGAAAGAGAAGCAA+TGG + chr7_2:6213963-6213982 None:intergenic 40.0%
GAAGAATCGGAGAGATTATC+AGG + chr7_2:6214084-6214103 None:intergenic 40.0%
! GTTTTCCAACGTCGTTTGAA+CGG - chr7_2:6214319-6214338 Msa1045950:intron 40.0%
! GCTGGAACTTTTTGTAAAGG+AGG - chr7_2:6214375-6214394 Msa1045950:exon 40.0%
TTGGCATAAGCACTTTGCAA+TGG - chr7_2:6214766-6214785 Msa1045950:intron 40.0%
!! CAATGGTTTGGTAGAGCTTA+TGG - chr7_2:6214783-6214802 Msa1045950:intron 40.0%
! CTTATCTCTAAGAGTGAAGC+TGG - chr7_2:6215138-6215157 Msa1045950:CDS 40.0%
AGAGTGAAGCTGGACAATAA+TGG - chr7_2:6215148-6215167 Msa1045950:intron 40.0%
! CAACCGAAAATTTGGAACAG+AGG - chr7_2:6215202-6215221 Msa1045950:intron 40.0%
AGGTGTAACGTATGTCTATG+AGG - chr7_2:6215222-6215241 Msa1045950:intron 40.0%
!! GGTCATTTTACACCTTCCTT+TGG + chr7_2:6215306-6215325 None:intergenic 40.0%
! CCTTGTTTGTGTGTCTGAAA+CGG - chr7_2:6215418-6215437 Msa1045950:intron 40.0%
! TTTGTGTGTCTGAAACGGAA+AGG - chr7_2:6215423-6215442 Msa1045950:intron 40.0%
! CGTTACTGATGGTGAAAAGT+AGG - chr7_2:6215495-6215514 Msa1045950:intron 40.0%
ATTCGGTTTCTACGTAGTCT+GGG + chr7_2:6215691-6215710 None:intergenic 40.0%
CTTATACTGGAGTCCAGATT+CGG + chr7_2:6215708-6215727 None:intergenic 40.0%
AATGGCCCAAAACCAAAGAA+AGG - chr7_2:6215824-6215843 Msa1045950:intron 40.0%
!! GTCTCTCCTTTCTTTGGTTT+TGG + chr7_2:6215833-6215852 None:intergenic 40.0%
ACTACTGTCTCTCCTTTCTT+TGG + chr7_2:6215839-6215858 None:intergenic 40.0%
AAAGAAAGGAGAGACAGTAG+TGG - chr7_2:6215838-6215857 Msa1045950:intron 40.0%
! AAGAGCTTCAAGTTCCATTC+AGG - chr7_2:6216133-6216152 Msa1045950:intron 40.0%
CAAGTTCCATTCAGGTAGAT+TGG - chr7_2:6216141-6216160 Msa1045950:intron 40.0%
GGCTACACCATAGGTTATTA+TGG - chr7_2:6216167-6216186 Msa1045950:intron 40.0%
GAAGCCCGGAATAAAACAAA+AGG - chr7_2:6216200-6216219 Msa1045950:intron 40.0%
!!! ACCGCCTTTTGTTTTATTCC+GGG + chr7_2:6216207-6216226 None:intergenic 40.0%
CTATCTAGACATTGTCGAAG+TGG - chr7_2:6216264-6216283 Msa1045950:intron 40.0%
GAATGCAGTAGGGTTGAATA+AGG - chr7_2:6216520-6216539 Msa1045950:intron 40.0%
TCGACATCCTTCGTTAGTAT+TGG - chr7_2:6216659-6216678 Msa1045950:intron 40.0%
!! CATCCTTCGTTAGTATTGGT+TGG - chr7_2:6216663-6216682 Msa1045950:intron 40.0%
GAGTTTAGTCCTAATCCCAA+AGG + chr7_2:6216762-6216781 None:intergenic 40.0%
GATGCAGACTCCAGAAAATA+AGG + chr7_2:6216943-6216962 None:intergenic 40.0%
!! GGTAATACCTGCTTTTGAAG+AGG - chr7_2:6217005-6217024 Msa1045950:intron 40.0%
GTAAATGGCATGAAAGGACT+TGG + chr7_2:6217123-6217142 None:intergenic 40.0%
! TATGAAACCCTTTTTCCGCT+AGG - chr7_2:6217342-6217361 Msa1045950:intron 40.0%
AACTTCACCTAGCGGAAAAA+GGG + chr7_2:6217352-6217371 None:intergenic 40.0%
TAACTTCACCTAGCGGAAAA+AGG + chr7_2:6217353-6217372 None:intergenic 40.0%
GCTAGGTGAAGTTAGCTATA+TGG - chr7_2:6217359-6217378 Msa1045950:intron 40.0%
ACTCTTACCGAGAATGTTGT+AGG + chr7_2:6217583-6217602 None:intergenic 40.0%
!! AGTTGATGAACACTAGTGAC+AGG + chr7_2:6217611-6217630 None:intergenic 40.0%
GTTCCTTAGCACAAAATCCA+AGG + chr7_2:6217688-6217707 None:intergenic 40.0%
! GATTTTGTGCTAAGGAACCA+AGG - chr7_2:6217690-6217709 Msa1045950:intron 40.0%
ATCAAAATTGTCGCATAGGC+AGG + chr7_2:6218257-6218276 None:intergenic 40.0%
CTCTCCGATTCTTCTTTCTC+CGG - chr7_2:6214090-6214109 Msa1045950:three_prime_UTR 45.0%
CTGACCGGAGAAAGAAGAAT+CGG + chr7_2:6214097-6214116 None:intergenic 45.0%
GGTAAAAGCAACGGTAAGAG+TGG - chr7_2:6214288-6214307 Msa1045950:intron 45.0%
TTTCTCCGTTCAAACGACGT+TGG + chr7_2:6214327-6214346 None:intergenic 45.0%
GTCGTTTGAACGGAGAAAGA+TGG - chr7_2:6214329-6214348 Msa1045950:intron 45.0%
TCTTCCATTGCTGTCATTGC+TGG - chr7_2:6214357-6214376 Msa1045950:three_prime_UTR 45.0%
AGTTCCAGCAATGACAGCAA+TGG + chr7_2:6214364-6214383 None:intergenic 45.0%
AGAAGTTCCGAAGAAGGTCA+TGG - chr7_2:6215382-6215401 Msa1045950:intron 45.0%
AAACCGACCATGACCTTCTT+CGG + chr7_2:6215392-6215411 None:intergenic 45.0%
CCGTTTCAGACACACAAACA+AGG + chr7_2:6215421-6215440 None:intergenic 45.0%
TGAAACGGAAAGGAGGAGAA+TGG - chr7_2:6215433-6215452 Msa1045950:intron 45.0%
! TGCAGTTGTGTCGTTACTGA+TGG - chr7_2:6215484-6215503 Msa1045950:intron 45.0%
! GATTCGGTTTCTACGTAGTC+TGG + chr7_2:6215692-6215711 None:intergenic 45.0%
GACTACGTAGAAACCGAATC+TGG - chr7_2:6215692-6215711 Msa1045950:intron 45.0%
CGAATCTGGACTCCAGTATA+AGG - chr7_2:6215706-6215725 Msa1045950:intron 45.0%
!!! TTTGGTTTTGGGCCATTTCC+GGG + chr7_2:6215821-6215840 None:intergenic 45.0%
!!! CTTTGGTTTTGGGCCATTTC+CGG + chr7_2:6215822-6215841 None:intergenic 45.0%
TCCATTCAGGTAGATTGGGA+TGG - chr7_2:6216146-6216165 Msa1045950:intron 45.0%
! ATGGTCGCATATTTGAAGCC+CGG - chr7_2:6216186-6216205 Msa1045950:intron 45.0%
GCCCGGAATAAAACAAAAGG+CGG - chr7_2:6216203-6216222 Msa1045950:intron 45.0%
ATTCAAAGTAGGATCGCACG+AGG - chr7_2:6216353-6216372 Msa1045950:intron 45.0%
TCTAGAGGGAAAACCCTTTG+TGG - chr7_2:6216596-6216615 Msa1045950:intron 45.0%
GAGCCAACCAATACTAACGA+AGG + chr7_2:6216669-6216688 None:intergenic 45.0%
ACGATAACACCTTGTGGCAA+GGG + chr7_2:6216811-6216830 None:intergenic 45.0%
! TTGCCACAAGGTGTTATCGT+GGG - chr7_2:6216811-6216830 Msa1045950:intron 45.0%
AAACCCACGATAACACCTTG+TGG + chr7_2:6216817-6216836 None:intergenic 45.0%
! TCAGGATATCCAAGTTCTGG+TGG + chr7_2:6217532-6217551 None:intergenic 45.0%
CTCTCAGGATATCCAAGTTC+TGG + chr7_2:6217535-6217554 None:intergenic 45.0%
CCGAGAATGTTGTAGGTCTT+GGG + chr7_2:6217576-6217595 None:intergenic 45.0%
CCCAAGACCTACAACATTCT+CGG - chr7_2:6217573-6217592 Msa1045950:intron 45.0%
ACCGAGAATGTTGTAGGTCT+TGG + chr7_2:6217577-6217596 None:intergenic 45.0%
! GAGCCTTGGATTTTGTGCTA+AGG - chr7_2:6217682-6217701 Msa1045950:intron 45.0%
! GAGTCTTGTCTATCAACCCT+TGG + chr7_2:6217710-6217729 None:intergenic 45.0%
GTCTTGCTCTGACATGGATT+CGG + chr7_2:6217883-6217902 None:intergenic 45.0%
CAAGACTACCAGTGAACTGA+TGG - chr7_2:6217897-6217916 Msa1045950:intron 45.0%
GTTCCGAAGAAGGTCATGGT+CGG - chr7_2:6215386-6215405 Msa1045950:intron 50.0%
! GTGTGTCTGAAACGGAAAGG+AGG - chr7_2:6215426-6215445 Msa1045950:intron 50.0%
ATACAGTGCCTGCGCTTAGA+GGG - chr7_2:6215636-6215655 Msa1045950:intron 50.0%
TAATCCTTCCCTCTAAGCGC+AGG + chr7_2:6215647-6215666 None:intergenic 50.0%
GCGCTTAGAGGGAAGGATTA+TGG - chr7_2:6215647-6215666 Msa1045950:intron 50.0%
CGTGCTGCATCACCTTATAC+TGG + chr7_2:6215721-6215740 None:intergenic 50.0%
AAATTGCAGGACTTGCGACC+CGG - chr7_2:6215800-6215819 Msa1045950:CDS 50.0%
GCCATCCCAATCTACCTGAA+TGG + chr7_2:6216150-6216169 None:intergenic 50.0%
GATTGGGATGGCTACACCAT+AGG - chr7_2:6216158-6216177 Msa1045950:intron 50.0%
AACAAAAGGCGGTTCCTTCG+AGG - chr7_2:6216214-6216233 Msa1045950:intron 50.0%
TGAAGAGTCTGAACGCCCTT+TGG - chr7_2:6216743-6216762 Msa1045950:intron 50.0%
GAAGAGTCTGAACGCCCTTT+GGG - chr7_2:6216744-6216763 Msa1045950:intron 50.0%
!! TCTGAACGCCCTTTGGGATT+AGG - chr7_2:6216750-6216769 Msa1045950:intron 50.0%
TCGACTTTACCCTTGCCACA+AGG - chr7_2:6216799-6216818 Msa1045950:intron 50.0%
CACGATAACACCTTGTGGCA+AGG + chr7_2:6216812-6216831 None:intergenic 50.0%
! CTTGCCACAAGGTGTTATCG+TGG - chr7_2:6216810-6216829 Msa1045950:intron 50.0%
GCAACAGCCTCTTCAAAAGC+AGG + chr7_2:6217015-6217034 None:intergenic 50.0%
!! GCTTTTGAAGAGGCTGTTGC+AGG - chr7_2:6217015-6217034 Msa1045950:intron 50.0%
ACTTGGACGTAACACAGCTC+AGG + chr7_2:6217106-6217125 None:intergenic 50.0%
GCACAAAATCCAAGGCTCGT+TGG + chr7_2:6217680-6217699 None:intergenic 50.0%
! CTGGTAGTCTTGCTCTGACA+TGG + chr7_2:6217889-6217908 None:intergenic 50.0%
CATACAGTGCCTGCGCTTAG+AGG - chr7_2:6215635-6215654 Msa1045950:intron 55.0%
GCTGTTGCAGGCATGTCTCT+CGG - chr7_2:6217027-6217046 Msa1045950:intron 55.0%
CTGTTGCAGGCATGTCTCTC+GGG - chr7_2:6217028-6217047 Msa1045950:intron 55.0%
TGTTGCAGGCATGTCTCTCG+GGG - chr7_2:6217029-6217048 Msa1045950:intron 55.0%
TTTACAGGGCCAACGAGCCT+TGG - chr7_2:6217668-6217687 Msa1045950:intron 55.0%
AGTGCCTGCGCTTAGAGGGA+AGG - chr7_2:6215640-6215659 Msa1045950:intron 60.0%
CAGGACTTGCGACCCGGAAA+TGG - chr7_2:6215806-6215825 Msa1045950:CDS 60.0%
GTTGCAGGCATGTCTCTCGG+GGG - chr7_2:6217030-6217049 Msa1045950:intron 60.0%
!! TGTCTCTCGGGGGCATTCGA+AGG - chr7_2:6217040-6217059 Msa1045950:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 6213814 6218349 6213814 ID=Msa1045950;Name=Msa1045950
chr7_2 mRNA 6213814 6218349 6213814 ID=Msa1045950-mRNA-1;Parent=Msa1045950;Name=Msa1045950-mRNA-1;_AED=0.32;_eAED=0.32;_QI=124|1|1|1|0.9|0.81|11|457|240
chr7_2 exon 6213814 6214221 6213814 ID=Msa1045950-mRNA-1:exon:1440;Parent=Msa1045950-mRNA-1
chr7_2 exon 6214344 6214488 6214344 ID=Msa1045950-mRNA-1:exon:1439;Parent=Msa1045950-mRNA-1
chr7_2 exon 6214569 6214644 6214569 ID=Msa1045950-mRNA-1:exon:1438;Parent=Msa1045950-mRNA-1
chr7_2 exon 6215102 6215157 6215102 ID=Msa1045950-mRNA-1:exon:1437;Parent=Msa1045950-mRNA-1
chr7_2 exon 6215789 6215833 6215789 ID=Msa1045950-mRNA-1:exon:1436;Parent=Msa1045950-mRNA-1
chr7_2 exon 6215928 6216008 6215928 ID=Msa1045950-mRNA-1:exon:1435;Parent=Msa1045950-mRNA-1
chr7_2 exon 6216304 6216354 6216304 ID=Msa1045950-mRNA-1:exon:1434;Parent=Msa1045950-mRNA-1
chr7_2 exon 6216436 6216521 6216436 ID=Msa1045950-mRNA-1:exon:1433;Parent=Msa1045950-mRNA-1
chr7_2 exon 6217737 6217874 6217737 ID=Msa1045950-mRNA-1:exon:1432;Parent=Msa1045950-mRNA-1
chr7_2 exon 6218052 6218085 6218052 ID=Msa1045950-mRNA-1:exon:1431;Parent=Msa1045950-mRNA-1
chr7_2 exon 6218166 6218349 6218166 ID=Msa1045950-mRNA-1:exon:1430;Parent=Msa1045950-mRNA-1
chr7_2 five_prime_UTR 6218226 6218349 6218226 ID=Msa1045950-mRNA-1:five_prime_utr;Parent=Msa1045950-mRNA-1
chr7_2 CDS 6218166 6218225 6218166 ID=Msa1045950-mRNA-1:cds;Parent=Msa1045950-mRNA-1
chr7_2 CDS 6218052 6218085 6218052 ID=Msa1045950-mRNA-1:cds;Parent=Msa1045950-mRNA-1
chr7_2 CDS 6217737 6217874 6217737 ID=Msa1045950-mRNA-1:cds;Parent=Msa1045950-mRNA-1
chr7_2 CDS 6216436 6216521 6216436 ID=Msa1045950-mRNA-1:cds;Parent=Msa1045950-mRNA-1
chr7_2 CDS 6216304 6216354 6216304 ID=Msa1045950-mRNA-1:cds;Parent=Msa1045950-mRNA-1
chr7_2 CDS 6215928 6216008 6215928 ID=Msa1045950-mRNA-1:cds;Parent=Msa1045950-mRNA-1
chr7_2 CDS 6215789 6215833 6215789 ID=Msa1045950-mRNA-1:cds;Parent=Msa1045950-mRNA-1
chr7_2 CDS 6215102 6215157 6215102 ID=Msa1045950-mRNA-1:cds;Parent=Msa1045950-mRNA-1
chr7_2 CDS 6214569 6214644 6214569 ID=Msa1045950-mRNA-1:cds;Parent=Msa1045950-mRNA-1
chr7_2 CDS 6214393 6214488 6214393 ID=Msa1045950-mRNA-1:cds;Parent=Msa1045950-mRNA-1
chr7_2 three_prime_UTR 6214344 6214392 6214344 ID=Msa1045950-mRNA-1:three_prime_utr;Parent=Msa1045950-mRNA-1
chr7_2 three_prime_UTR 6213814 6214221 6213814 ID=Msa1045950-mRNA-1:three_prime_utr;Parent=Msa1045950-mRNA-1
Gene Sequence

>Msa1045950

ATGGCTTCACTTTTGTCCTTTTCCATTGCTTCTCTTTCTCTACCTAAATCTCAATCTCTGGATCCTGATAATCTCTCCGATTCTTCTTTCTCCGGTAAAAGCAACGGTAAGAGTGGTAGTTGTTGTTTTCCAACGTCGTTTGAACGGAGAAAGATGGTTCTGTCTTCCATTGCTGTCATTGCTGGAACTTTTTGTAAAGGAGGAATTGGTCTTGCATCTGAATTTGCTGACATGCCTGCGCTTAGAGGGAAGGATTATGGCAAATCAAAAATGAAGTACCCAGACTACGTAGAAACCGAATCTGGACTCCAGTATAAGGACTTGCGACCCGGAAATGGCCCAAAACCAAAGAAAGGAGAGACAGTAGTGGTAGATTGGGATGGCTACACCATAGGTTATTATGGTCGCATATTTGAAGCCCGGAATAAAACAAAAGGCGGTTCCTTCGAGGGTGATGATAAGGACTTTTTCAAATTCAAAGTAGGATCGCACGAGGTAATACCTGCTTTTGAAGAGGCTGTTGCAGGCATGTCTCTCGGGGGCATTCGAAGGATAATTGTACCACCAGAACTTGGATATCCTGAGAGTGATTATAATAAAGGTGGCCCAAGACCTACAACATTCTCGGGCCAACGAGCCTTGGATTTTGTGCTAAGGAACCAAGGGTTGATAGACAAGACTCTCTTGTTTGATATTGAGCTAATGAAGATTATTCCAAATTGA

Protein sequence

>Msa1045950

MASLLSFSIASLSLPKSQSLDPDNLSDSSFSGKSNGKSGSCCFPTSFERRKMVLSSIAVIAGTFCKGGIGLASEFADMPALRGKDYGKSKMKYPDYVETESGLQYKDLRPGNGPKPKKGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDFFKFKVGSHEVIPAFEEAVAGMSLGGIRRIIVPPELGYPESDYNKGGPRPTTFSGQRALDFVLRNQGLIDKTLLFDIELMKIIPN*