AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1045860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1045860 MtrunA17_Chr7g0214751 97.095 241 6 1 1 241 1 240 1.02e-171 472
Msa1045860 MtrunA17_Chr8g0335211 30.201 149 71 5 91 238 87 203 3.12e-12 63.9
Msa1045860 MtrunA17_Chr1g0179231 28.571 203 121 6 43 236 26 213 1.19e-11 62.4
Msa1045860 MtrunA17_Chr4g0033841 35.780 109 58 4 98 205 108 205 9.44e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1045860 AT5G13410.1 73.585 212 51 2 34 241 46 256 5.80e-111 319
Msa1045860 AT5G13410.2 67.296 159 47 2 34 188 46 203 3.48e-70 214
Msa1045860 AT5G13410.3 65.035 143 43 3 34 170 46 187 1.71e-56 179
Msa1045860 AT4G19830.1 32.000 150 81 4 98 236 83 222 6.07e-13 66.6
Msa1045860 AT3G60370.1 28.671 143 70 4 96 238 114 224 1.13e-11 63.2
Msa1045860 AT3G60370.2 28.671 143 70 4 96 238 143 253 1.41e-11 63.2

Find 75 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTCTCCTTTCTTTGGTTT+TGG 0.098567 7_2:+6110187 None:intergenic
AATTAGAACACGTATTTATT+TGG 0.192325 7_2:+6112205 None:intergenic
AGTACCAGAGATTGAGATTT+AGG 0.204966 7_2:+6112040 None:intergenic
ACTACTGTCTCTCCTTTCTT+TGG 0.230123 7_2:+6110181 None:intergenic
TCTTCCATTGCTGTCATTGC+TGG 0.261109 7_2:-6111663 Msa1045860:CDS
GATTCGGTTTCTACGTAGTC+TGG 0.296521 7_2:+6110328 None:intergenic
ACCGAGAATGTTGTAGGTCT+TGG 0.306682 7_2:+6108444 None:intergenic
CTGTTGCAGGCATGTCTCTC+GGG 0.313157 7_2:-6108990 Msa1045860:CDS
GGCTACACCATAGGTTATTA+TGG 0.314573 7_2:-6109850 Msa1045860:CDS
CTTGAGGAAGGGAAGGATTA+TGG 0.324294 7_2:-6110370 Msa1045860:CDS
AGAAACTAACCTGAATGTTT+TGG 0.331460 7_2:+6108212 None:intergenic
CAAGTTCCATTCAGGTAGAT+TGG 0.341541 7_2:-6109876 Msa1045860:intron
CGAATCTGGACTCCAGTATA+AGG 0.349702 7_2:-6110311 Msa1045860:intron
GAAGAATCGGAGAGATTATC+AGG 0.361485 7_2:+6111939 None:intergenic
CCTGAGAGTGATTATAATAA+AGG 0.373753 7_2:-6108471 Msa1045860:CDS
CTCTCAGGATATCCAAGTTC+TGG 0.374321 7_2:+6108486 None:intergenic
GCTGTTGCAGGCATGTCTCT+CGG 0.418797 7_2:-6108991 Msa1045860:CDS
CAGGACTTGCGACCCGGAAA+TGG 0.420506 7_2:-6110211 Msa1045860:CDS
CGTGCTGCATCACCTTATAC+TGG 0.421611 7_2:+6110299 None:intergenic
AAGTTCCATTCAGGTAGATT+GGG 0.421771 7_2:-6109875 Msa1045860:intron
CCGAGAATGTTGTAGGTCTT+GGG 0.424007 7_2:+6108445 None:intergenic
GACTACGTAGAAACCGAATC+TGG 0.424093 7_2:-6110325 Msa1045860:CDS
CTCTCCGATTCTTCTTTCTC+CGG 0.431412 7_2:-6111930 Msa1045860:intron
ATCAAAATTGTCGCATAGGC+AGG 0.436623 7_2:+6107760 None:intergenic
ATATCACCACCAAAACATTC+AGG 0.437986 7_2:-6108221 Msa1045860:intron
ACTCTTACCGAGAATGTTGT+AGG 0.441297 7_2:+6108438 None:intergenic
GAAGGATCAATCAATGATAC+TGG 0.446572 7_2:+6108048 None:intergenic
CTTATACTGGAGTCCAGATT+CGG 0.447520 7_2:+6110312 None:intergenic
CCCAAGACCTACAACATTCT+CGG 0.450933 7_2:-6108445 Msa1045860:intron
AGAAAGAGAAGCAATGGAAA+AGG 0.453395 7_2:+6112066 None:intergenic
AAATATGCAGGGTGATGATA+AGG 0.476575 7_2:-6109697 Msa1045860:intron
TTTACAGGGCCAACGAGCCT+TGG 0.477434 7_2:-6108351 Msa1045860:intron
AGGTAGAGAAAGAGAAGCAA+TGG 0.477899 7_2:+6112060 None:intergenic
TTTCTGGTTATGTTCTCCAT+AGG 0.483197 7_2:-6108010 Msa1045860:three_prime_UTR
CCTTTATTATAATCACTCTC+AGG 0.484019 7_2:+6108471 None:intergenic
AAAATACTCACAAGGTATGA+AGG 0.485375 7_2:+6108030 None:intergenic
GTACTGTACTTTGTGTTGTG+TGG 0.489766 7_2:+6112118 None:intergenic
GTCGTTTGAACGGAGAAAGA+TGG 0.491223 7_2:-6111691 Msa1045860:CDS
TCTACCTAAATCTCAATCTC+TGG 0.493829 7_2:-6112044 Msa1045860:intron
ACAGTGCCTGCGCTTGAGGA+AGG 0.503923 7_2:-6110382 Msa1045860:intron
CAGTACAGAAGTTACAGTTA+TGG 0.509987 7_2:-6112101 Msa1045860:exon
AACAAAAGGCGGTTCCTTCG+AGG 0.510702 7_2:-6109803 Msa1045860:intron
ATAATTGTACCACCAGAACT+TGG 0.512580 7_2:-6108498 Msa1045860:CDS
GTACTTTGTGTTGTGTGGAA+TGG 0.513767 7_2:+6112123 None:intergenic
ACATACAGTGCCTGCGCTTG+AGG 0.516475 7_2:-6110386 Msa1045860:intron
CTGACCGGAGAAAGAAGAAT+CGG 0.525266 7_2:+6111926 None:intergenic
TGTTGCAGGCATGTCTCTCG+GGG 0.531908 7_2:-6108989 Msa1045860:CDS
TCCTTCCCTTCCTCAAGCGC+AGG 0.540469 7_2:+6110376 None:intergenic
GCAACAGCCTCTTCAAAAGC+AGG 0.542551 7_2:+6109006 None:intergenic
GAAGCCCGGAATAAAACAAA+AGG 0.543558 7_2:-6109817 Msa1045860:CDS
TATGCGACCATAATAACCTA+TGG 0.545221 7_2:+6109843 None:intergenic
TTACATCAAAATTGTCGCAT+AGG 0.547571 7_2:+6107756 None:intergenic
AAATTGCAGGACTTGCGACC+CGG 0.549601 7_2:-6110217 Msa1045860:intron
GAGTCTTGTCTATCAACCCT+TGG 0.550697 7_2:+6108312 None:intergenic
ATGGTCGCATATTTGAAGCC+CGG 0.550903 7_2:-6109831 Msa1045860:CDS
AATGGCCCAAAACCAAAGAA+AGG 0.553989 7_2:-6110193 Msa1045860:CDS
GATTGGGATGGCTACACCAT+AGG 0.554754 7_2:-6109859 Msa1045860:CDS
ATTCGGTTTCTACGTAGTCT+GGG 0.563402 7_2:+6110329 None:intergenic
GTTCCTTAGCACAAAATCCA+AGG 0.568528 7_2:+6108334 None:intergenic
CAGTGCCTGCGCTTGAGGAA+GGG 0.573450 7_2:-6110381 Msa1045860:CDS
TTTCTCCGTTCAAACGACGT+TGG 0.585440 7_2:+6111696 None:intergenic
GCCTGCGCTTGAGGAAGGGA+AGG 0.588946 7_2:-6110377 Msa1045860:CDS
TCCATTCAGGTAGATTGGGA+TGG 0.591083 7_2:-6109871 Msa1045860:intron
AGTTCCAGCAATGACAGCAA+TGG 0.596327 7_2:+6111659 None:intergenic
GGTAAAAGCAACGGTAAGAG+TGG 0.605043 7_2:-6111732 Msa1045860:CDS
GCACAAAATCCAAGGCTCGT+TGG 0.605057 7_2:+6108342 None:intergenic
GAGAGTGATTATAATAAAGG+TGG 0.627466 7_2:-6108468 Msa1045860:CDS
TCAGGATATCCAAGTTCTGG+TGG 0.630805 7_2:+6108489 None:intergenic
CAAAACATTCAATACCTCGA+AGG 0.640541 7_2:+6109789 None:intergenic
GCCCGGAATAAAACAAAAGG+CGG 0.648713 7_2:-6109814 Msa1045860:CDS
TCAATAACTACATACAGATG+AGG 0.653463 7_2:-6107860 Msa1045860:three_prime_UTR
AAAGAAAGGAGAGACAGTAG+TGG 0.691301 7_2:-6110179 Msa1045860:intron
GTTGCAGGCATGTCTCTCGG+GGG 0.694566 7_2:-6108988 Msa1045860:CDS
ATAACCAGAAAATACTCACA+AGG 0.721530 7_2:+6108022 None:intergenic
ATTCAAAGTAGGATCGCACG+AGG 0.729797 7_2:-6109664 Msa1045860:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCCTTAAAAAATTTAATA+TGG - chr7_2:6111275-6111294 Msa1045860:intron 10.0%
!! AAGCTATTATTAATTGAAAT+TGG + chr7_2:6109200-6109219 None:intergenic 15.0%
!! ATTTGAAAAACAACAAAATA+AGG + chr7_2:6110180-6110199 None:intergenic 15.0%
!!! TGTTAATTTATTTTATCTAG+AGG - chr7_2:6110457-6110476 Msa1045860:intron 15.0%
!!! GTTAATTTATTTTATCTAGA+GGG - chr7_2:6110458-6110477 Msa1045860:intron 15.0%
!! AAATTATAAGTGATATAACA+TGG - chr7_2:6110578-6110597 Msa1045860:intron 15.0%
!! CAGTATAATAAAATAAATTC+AGG + chr7_2:6111074-6111093 None:intergenic 15.0%
!!! CAACCATATTAAATTTTTTA+AGG + chr7_2:6111281-6111300 None:intergenic 15.0%
!! AAAAATTTGACAAATCAATT+TGG + chr7_2:6111639-6111658 None:intergenic 15.0%
!! AATTAGAACACGTATTTATT+TGG + chr7_2:6107691-6107710 None:intergenic 20.0%
!! GAAATGATAATAGTTAAGTA+TGG + chr7_2:6107925-6107944 None:intergenic 20.0%
!! TAACTATTATCATTTCTTTC+AGG - chr7_2:6107929-6107948 Msa1045860:three_prime_UTR 20.0%
!! AATCAACTTAACTTATGTAT+AGG - chr7_2:6108380-6108399 Msa1045860:intron 20.0%
!!! TGTTTTCATAAACTATCTTT+GGG - chr7_2:6108458-6108477 Msa1045860:CDS 20.0%
!!! TTATTTCTATAAACTCTCTT+GGG - chr7_2:6108716-6108735 Msa1045860:intron 20.0%
!!! TCATTAAGCTAAGTTTTTTT+AGG + chr7_2:6108745-6108764 None:intergenic 20.0%
!! TATACAATACAACAATATCA+TGG + chr7_2:6108880-6108899 None:intergenic 20.0%
!! ACGACAAATAATATAATGAA+GGG + chr7_2:6108903-6108922 None:intergenic 20.0%
!! AACGACAAATAATATAATGA+AGG + chr7_2:6108904-6108923 None:intergenic 20.0%
!! TACTCGTTCTAATTTAAATA+GGG + chr7_2:6109230-6109249 None:intergenic 20.0%
!! ATACTCGTTCTAATTTAAAT+AGG + chr7_2:6109231-6109250 None:intergenic 20.0%
!!! GTATTTGTTTTATCATAAAC+TGG - chr7_2:6109400-6109419 Msa1045860:intron 20.0%
!! CATTATATTGAAATCTTTGT+AGG + chr7_2:6109471-6109490 None:intergenic 20.0%
!! TAGTAGTATTAATAAATTGC+AGG - chr7_2:6109663-6109682 Msa1045860:intron 20.0%
!!! CTATTGATTTTATAGTCAAT+TGG - chr7_2:6109758-6109777 Msa1045860:intron 20.0%
!!! ATACTGATTCTAAATCAAAT+TGG - chr7_2:6109825-6109844 Msa1045860:CDS 20.0%
!! TTATAATTTCGTTATAGAAC+AGG + chr7_2:6110567-6110586 None:intergenic 20.0%
!! ATAAATTCTTACTCTTGATT+TGG - chr7_2:6111102-6111121 Msa1045860:intron 20.0%
!! TAAATTCTTACTCTTGATTT+GGG - chr7_2:6111103-6111122 Msa1045860:intron 20.0%
!!! ATTTTAATTACGGAAATTCA+GGG + chr7_2:6111144-6111163 None:intergenic 20.0%
!!! AATTTTAATTACGGAAATTC+AGG + chr7_2:6111145-6111164 None:intergenic 20.0%
!! TTTAATATGGTTGAAAAGTA+AGG - chr7_2:6111288-6111307 Msa1045860:intron 20.0%
!!! ACAATTTTGATGTAATATTC+CGG - chr7_2:6112145-6112164 Msa1045860:five_prime_UTR 20.0%
! ATTTCATTAATGTCGAGTTT+GGG + chr7_2:6108040-6108059 None:intergenic 25.0%
! AAATATGCTATTAACTTTGC+TGG + chr7_2:6108091-6108110 None:intergenic 25.0%
!!! TAATATCTAACCGTTTTTTC+AGG - chr7_2:6108140-6108159 Msa1045860:intron 25.0%
!! CTGTTTTCATAAACTATCTT+TGG - chr7_2:6108457-6108476 Msa1045860:CDS 25.0%
! ACTTATTTGAGCTTATGTAT+TGG - chr7_2:6108620-6108639 Msa1045860:intron 25.0%
!!! CTTATTTCTATAAACTCTCT+TGG - chr7_2:6108715-6108734 Msa1045860:intron 25.0%
!! ATTAAGTTGTTTATCCAAAC+AGG - chr7_2:6108853-6108872 Msa1045860:intron 25.0%
! TCCATTATACTAAACAATGT+AGG - chr7_2:6108971-6108990 Msa1045860:intron 25.0%
! TCCTACATTGTTTAGTATAA+TGG + chr7_2:6108975-6108994 None:intergenic 25.0%
! ACTCGTTCTAATTTAAATAG+GGG + chr7_2:6109229-6109248 None:intergenic 25.0%
!!! CTTTTTCTTATTTTACTACG+TGG + chr7_2:6109445-6109464 None:intergenic 25.0%
!!! TTCTTTGAAATGAGTTTTGA+TGG - chr7_2:6109905-6109924 Msa1045860:intron 25.0%
!!! TCTTTGAAATGAGTTTTGAT+GGG - chr7_2:6109906-6109925 Msa1045860:intron 25.0%
!!! TTGTTGTTTTTCAAATATGC+AGG - chr7_2:6110184-6110203 Msa1045860:CDS 25.0%
!!! TGTTGTTTTTCAAATATGCA+GGG - chr7_2:6110185-6110204 Msa1045860:CDS 25.0%
!!! GACTTTTTCAAATTCAAAGT+AGG - chr7_2:6110218-6110237 Msa1045860:intron 25.0%
! ATATTAATCATTACATGACG+AGG + chr7_2:6110262-6110281 None:intergenic 25.0%
! ATAGTTCCTTCAATTTCAAT+AGG - chr7_2:6110280-6110299 Msa1045860:intron 25.0%
! AAAGATCCTATTGAAATTGA+AGG + chr7_2:6110289-6110308 None:intergenic 25.0%
!! TTCAATAGGATCTTTTCTAT+AGG - chr7_2:6110294-6110313 Msa1045860:intron 25.0%
! ATATAAAACTGAACCACAAA+GGG + chr7_2:6110488-6110507 None:intergenic 25.0%
! TATATAAAACTGAACCACAA+AGG + chr7_2:6110489-6110508 None:intergenic 25.0%
! AATTTGAGTGCTTAATATGT+TGG + chr7_2:6110791-6110810 None:intergenic 25.0%
! AGAAACTGTAATTCAGTAAA+TGG + chr7_2:6111013-6111032 None:intergenic 25.0%
! GTTTCTATCAATTCAAACTT+TGG - chr7_2:6111027-6111046 Msa1045860:intron 25.0%
! ATCAATTCAAACTTTGGATT+TGG - chr7_2:6111033-6111052 Msa1045860:intron 25.0%
! TCAATTCAAACTTTGGATTT+GGG - chr7_2:6111034-6111053 Msa1045860:intron 25.0%
! AGAGTAAGAATTTATAGAAG+TGG + chr7_2:6111097-6111116 None:intergenic 25.0%
!! AAATTCTTACTCTTGATTTG+GGG - chr7_2:6111104-6111123 Msa1045860:intron 25.0%
!!! GCGATTGACAATTTTAATTA+CGG + chr7_2:6111154-6111173 None:intergenic 25.0%
! TAATTAAAATTGTCAATCGC+TGG - chr7_2:6111154-6111173 Msa1045860:intron 25.0%
! AATTAAAATTGTCAATCGCT+GGG - chr7_2:6111155-6111174 Msa1045860:intron 25.0%
! ATGTACTATAAAGAGATTGA+TGG - chr7_2:6111330-6111349 Msa1045860:intron 25.0%
!! CAATGTGAATATGTTTTACA+GGG - chr7_2:6111528-6111547 Msa1045860:intron 25.0%
! GAATTAATTGTAGACTTATC+TGG + chr7_2:6111815-6111834 None:intergenic 25.0%
!! ATTTCTTTTGATCACTTTGT+TGG - chr7_2:6112095-6112114 Msa1045860:exon 25.0%
! ATAAACGAACAATGAAAAAC+CGG + chr7_2:6112167-6112186 None:intergenic 25.0%
!! TTTTTCATTGTTCGTTTATC+TGG - chr7_2:6112168-6112187 Msa1045860:five_prime_UTR 25.0%
AATGAAAGAAGAATACTGAC+CGG + chr7_2:6107985-6108004 None:intergenic 30.0%
CATTTCATTAATGTCGAGTT+TGG + chr7_2:6108041-6108060 None:intergenic 30.0%
!!! GTTGCTTTTACCTGAAAAAA+CGG + chr7_2:6108153-6108172 None:intergenic 30.0%
!!! GTTTTTTCAGGTAAAAGCAA+CGG - chr7_2:6108152-6108171 Msa1045860:intron 30.0%
! ATTGCTGGAACTTTTTGTAA+AGG - chr7_2:6108245-6108264 Msa1045860:three_prime_UTR 30.0%
! ACTTTTTGTAAAGGAGGAAT+TGG - chr7_2:6108254-6108273 Msa1045860:exon 30.0%
TCAAATAAGCCAAATCAAAG+AGG - chr7_2:6108582-6108601 Msa1045860:intron 30.0%
AACATCAACAACCGAAAATT+TGG - chr7_2:6109067-6109086 Msa1045860:intron 30.0%
ACATAGTTCAAATAACCCAA+AGG - chr7_2:6109160-6109179 Msa1045860:intron 30.0%
ATATTAAGAAGTTCCGAAGA+AGG - chr7_2:6109249-6109268 Msa1045860:intron 30.0%
AGAGCGCAAAAGAAAAATTT+AGG + chr7_2:6109859-6109878 None:intergenic 30.0%
ATTTGACAACTTTACTCCTA+GGG - chr7_2:6109933-6109952 Msa1045860:intron 30.0%
ATGTTCAGAAATAATTCCCT+AGG + chr7_2:6109952-6109971 None:intergenic 30.0%
! TTTTCTATAGGTCTTGATGT+CGG - chr7_2:6110306-6110325 Msa1045860:intron 30.0%
AAGTAATGTTGAATGCAGTA+GGG - chr7_2:6110386-6110405 Msa1045860:intron 30.0%
!!! TAACATGGTTTTTTTGAGTG+AGG - chr7_2:6110593-6110612 Msa1045860:intron 30.0%
!!! CAAATTATGCCCTTATTTTC+TGG - chr7_2:6110805-6110824 Msa1045860:intron 30.0%
AATTCAGTAAATGGCATGAA+AGG + chr7_2:6111004-6111023 None:intergenic 30.0%
AAGTAAGGCAAATGTATGTT+TGG - chr7_2:6111303-6111322 Msa1045860:intron 30.0%
AGTAAGGCAAATGTATGTTT+GGG - chr7_2:6111304-6111323 Msa1045860:intron 30.0%
CCTTTATTATAATCACTCTC+AGG + chr7_2:6111425-6111444 None:intergenic 30.0%
CCTGAGAGTGATTATAATAA+AGG - chr7_2:6111422-6111441 Msa1045860:intron 30.0%
GAGAGTGATTATAATAAAGG+TGG - chr7_2:6111425-6111444 Msa1045860:intron 30.0%
! GCAATGTGAATATGTTTTAC+AGG - chr7_2:6111527-6111546 Msa1045860:intron 30.0%
! AGAAACTAACCTGAATGTTT+TGG + chr7_2:6111684-6111703 None:intergenic 30.0%
AAAATACTCACAAGGTATGA+AGG + chr7_2:6111866-6111885 None:intergenic 30.0%
ATAACCAGAAAATACTCACA+AGG + chr7_2:6111874-6111893 None:intergenic 30.0%
! TCATGATTTTTCATCACCTA+TGG + chr7_2:6111902-6111921 None:intergenic 30.0%
TCAATAACTACATACAGATG+AGG - chr7_2:6112033-6112052 Msa1045860:intron 30.0%
TTACATCAAAATTGTCGCAT+AGG + chr7_2:6112140-6112159 None:intergenic 30.0%
! AACATTTTGTGTGACATTTG+AGG - chr7_2:6112198-6112217 Msa1045860:five_prime_UTR 30.0%
!!! AAGGGAGTGTGTTTTAAAGA+TGG + chr7_2:6107734-6107753 None:intergenic 35.0%
! GGAAGTTGCTAGATTTTGAA+GGG + chr7_2:6107752-6107771 None:intergenic 35.0%
! TGGAAGTTGCTAGATTTTGA+AGG + chr7_2:6107753-6107772 None:intergenic 35.0%
CAGTACAGAAGTTACAGTTA+TGG - chr7_2:6107792-6107811 Msa1045860:three_prime_UTR 35.0%
AGAAAGAGAAGCAATGGAAA+AGG + chr7_2:6107830-6107849 None:intergenic 35.0%
TCTACCTAAATCTCAATCTC+TGG - chr7_2:6107849-6107868 Msa1045860:three_prime_UTR 35.0%
AGTACCAGAGATTGAGATTT+AGG + chr7_2:6107856-6107875 None:intergenic 35.0%
TGAATGAGTGTGTGAATTGA+AGG + chr7_2:6107899-6107918 None:intergenic 35.0%
GTTCTTTCAATCAGTCTTAG+AGG - chr7_2:6108538-6108557 Msa1045860:intron 35.0%
AAACAAGCTCCTCTTTGATT+TGG + chr7_2:6108594-6108613 None:intergenic 35.0%
! AAATCAAAGAGGAGCTTGTT+TGG - chr7_2:6108593-6108612 Msa1045860:intron 35.0%
ATAAGCACTTTGCAATGGTT+TGG - chr7_2:6108644-6108663 Msa1045860:intron 35.0%
AACAATATCATGGTCCTGTT+TGG + chr7_2:6108870-6108889 None:intergenic 35.0%
! ACACCTCTGTTCCAAATTTT+CGG + chr7_2:6109081-6109100 None:intergenic 35.0%
AACGTATGTCTATGAGGTAT+CGG - chr7_2:6109101-6109120 Msa1045860:intron 35.0%
! AGTTTGAGTTTGTAACCTCA+TGG - chr7_2:6109136-6109155 Msa1045860:intron 35.0%
! GTTTGAGTTTGTAACCTCAT+GGG - chr7_2:6109137-6109156 Msa1045860:intron 35.0%
TATTTGAACTATGTCCCATG+AGG + chr7_2:6109154-6109173 None:intergenic 35.0%
AGTTCAAATAACCCAAAGGA+AGG - chr7_2:6109164-6109183 Msa1045860:intron 35.0%
!! GTCATTTTACACCTTCCTTT+GGG + chr7_2:6109178-6109197 None:intergenic 35.0%
!!! TCTCTCCTTTCTTTGGTTTT+GGG + chr7_2:6109708-6109727 None:intergenic 35.0%
ATCTACATAGCAGACATTCT+AGG - chr7_2:6109882-6109901 Msa1045860:intron 35.0%
GATTTGACAACTTTACTCCT+AGG - chr7_2:6109932-6109951 Msa1045860:intron 35.0%
AAGTTCCATTCAGGTAGATT+GGG - chr7_2:6110018-6110037 Msa1045860:intron 35.0%
TATGCGACCATAATAACCTA+TGG + chr7_2:6110053-6110072 None:intergenic 35.0%
!!! AACCGCCTTTTGTTTTATTC+CGG + chr7_2:6110084-6110103 None:intergenic 35.0%
CAAAACATTCAATACCTCGA+AGG + chr7_2:6110107-6110126 None:intergenic 35.0%
AAATATGCAGGGTGATGATA+AGG - chr7_2:6110196-6110215 Msa1045860:CDS 35.0%
CTACTGCATTCAACATTACT+TGG + chr7_2:6110387-6110406 None:intergenic 35.0%
CAAGTAATGTTGAATGCAGT+AGG - chr7_2:6110385-6110404 Msa1045860:intron 35.0%
GAATAAGGATAAGTCCTACT+TGG - chr7_2:6110411-6110430 Msa1045860:intron 35.0%
AAGTCCTACTTGGTTATACT+AGG - chr7_2:6110421-6110440 Msa1045860:intron 35.0%
GAATCCTAGTATAACCAAGT+AGG + chr7_2:6110428-6110447 None:intergenic 35.0%
! TATTAAGCATGTGCTACTGT+TGG - chr7_2:6110512-6110531 Msa1045860:intron 35.0%
AGTTTAGTCCTAATCCCAAA+GGG + chr7_2:6110637-6110656 None:intergenic 35.0%
ATGCAGACTCCAGAAAATAA+GGG + chr7_2:6110817-6110836 None:intergenic 35.0%
! TTCATGTGCTTTGAATGTTC+AGG - chr7_2:6110859-6110878 Msa1045860:intron 35.0%
ATATAGCTAACTTCACCTAG+CGG + chr7_2:6111235-6111254 None:intergenic 35.0%
ACTATGTTTATCAGTGATGC+AGG - chr7_2:6111372-6111391 Msa1045860:intron 35.0%
ATAATTGTACCACCAGAACT+TGG - chr7_2:6111395-6111414 Msa1045860:intron 35.0%
! ATTTTGTGCTAAGGAACCAA+GGG - chr7_2:6111565-6111584 Msa1045860:intron 35.0%
!!! GTTTTGGTGGTGATATTTCA+GGG + chr7_2:6111668-6111687 None:intergenic 35.0%
!!! TGTTTTGGTGGTGATATTTC+AGG + chr7_2:6111669-6111688 None:intergenic 35.0%
ATATCACCACCAAAACATTC+AGG - chr7_2:6111672-6111691 Msa1045860:CDS 35.0%
!! AACTAACCTGAATGTTTTGG+TGG + chr7_2:6111681-6111700 None:intergenic 35.0%
!!! GTTTTTTTCCATCAGTTCAC+TGG + chr7_2:6111782-6111801 None:intergenic 35.0%
AGACTTATCTGGCAATACAA+AGG + chr7_2:6111804-6111823 None:intergenic 35.0%
GAAGGATCAATCAATGATAC+TGG + chr7_2:6111848-6111867 None:intergenic 35.0%
! CATACCTTGTGAGTATTTTC+TGG - chr7_2:6111867-6111886 Msa1045860:intron 35.0%
!! TTTCTGGTTATGTTCTCCAT+AGG - chr7_2:6111883-6111902 Msa1045860:intron 35.0%
GTACTTTGTGTTGTGTGGAA+TGG + chr7_2:6107773-6107792 None:intergenic 40.0%
GTACTGTACTTTGTGTTGTG+TGG + chr7_2:6107778-6107797 None:intergenic 40.0%
AGGTAGAGAAAGAGAAGCAA+TGG + chr7_2:6107836-6107855 None:intergenic 40.0%
GAAGAATCGGAGAGATTATC+AGG + chr7_2:6107957-6107976 None:intergenic 40.0%
! GTTTTCCAACGTCGTTTGAA+CGG - chr7_2:6108192-6108211 Msa1045860:intron 40.0%
! GCTGGAACTTTTTGTAAAGG+AGG - chr7_2:6108248-6108267 Msa1045860:three_prime_UTR 40.0%
TTGGCATAAGCACTTTGCAA+TGG - chr7_2:6108639-6108658 Msa1045860:intron 40.0%
!! CAATGGTTTGGTAGAGCTTA+TGG - chr7_2:6108656-6108675 Msa1045860:intron 40.0%
! CTTATCTCTAAGAGTGAAGC+TGG - chr7_2:6109011-6109030 Msa1045860:CDS 40.0%
AGAGTGAAGCTGGACAATAA+TGG - chr7_2:6109021-6109040 Msa1045860:intron 40.0%
! CAACCGAAAATTTGGAACAG+AGG - chr7_2:6109075-6109094 Msa1045860:intron 40.0%
AGGTGTAACGTATGTCTATG+AGG - chr7_2:6109095-6109114 Msa1045860:intron 40.0%
!! GGTCATTTTACACCTTCCTT+TGG + chr7_2:6109179-6109198 None:intergenic 40.0%
! CCTTGTTTGTGTGTCTGAAA+CGG - chr7_2:6109291-6109310 Msa1045860:intron 40.0%
! TTTGTGTGTCTGAAACGGAA+AGG - chr7_2:6109296-6109315 Msa1045860:intron 40.0%
! CGTTACTGATGGTGAAAAGT+AGG - chr7_2:6109368-6109387 Msa1045860:intron 40.0%
ATTCGGTTTCTACGTAGTCT+GGG + chr7_2:6109567-6109586 None:intergenic 40.0%
CTTATACTGGAGTCCAGATT+CGG + chr7_2:6109584-6109603 None:intergenic 40.0%
AATGGCCCAAAACCAAAGAA+AGG - chr7_2:6109700-6109719 Msa1045860:intron 40.0%
!! GTCTCTCCTTTCTTTGGTTT+TGG + chr7_2:6109709-6109728 None:intergenic 40.0%
ACTACTGTCTCTCCTTTCTT+TGG + chr7_2:6109715-6109734 None:intergenic 40.0%
AAAGAAAGGAGAGACAGTAG+TGG - chr7_2:6109714-6109733 Msa1045860:intron 40.0%
! AAGAGCTTCAAGTTCCATTC+AGG - chr7_2:6110009-6110028 Msa1045860:intron 40.0%
CAAGTTCCATTCAGGTAGAT+TGG - chr7_2:6110017-6110036 Msa1045860:intron 40.0%
GGCTACACCATAGGTTATTA+TGG - chr7_2:6110043-6110062 Msa1045860:intron 40.0%
GAAGCCCGGAATAAAACAAA+AGG - chr7_2:6110076-6110095 Msa1045860:intron 40.0%
!!! ACCGCCTTTTGTTTTATTCC+GGG + chr7_2:6110083-6110102 None:intergenic 40.0%
CTATCTAGACATTGTCGAAG+TGG - chr7_2:6110140-6110159 Msa1045860:intron 40.0%
GAATGCAGTAGGGTTGAATA+AGG - chr7_2:6110396-6110415 Msa1045860:intron 40.0%
TCGACATCCTTCGTTAGTAT+TGG - chr7_2:6110535-6110554 Msa1045860:intron 40.0%
!! CATCCTTCGTTAGTATTGGT+TGG - chr7_2:6110539-6110558 Msa1045860:intron 40.0%
GAGTTTAGTCCTAATCCCAA+AGG + chr7_2:6110638-6110657 None:intergenic 40.0%
GATGCAGACTCCAGAAAATA+AGG + chr7_2:6110818-6110837 None:intergenic 40.0%
!! GGTAATACCTGCTTTTGAAG+AGG - chr7_2:6110880-6110899 Msa1045860:intron 40.0%
GTAAATGGCATGAAAGGACT+TGG + chr7_2:6110998-6111017 None:intergenic 40.0%
! TATGAAACCCTTTTTCCGCT+AGG - chr7_2:6111217-6111236 Msa1045860:intron 40.0%
AACTTCACCTAGCGGAAAAA+GGG + chr7_2:6111227-6111246 None:intergenic 40.0%
TAACTTCACCTAGCGGAAAA+AGG + chr7_2:6111228-6111247 None:intergenic 40.0%
GCTAGGTGAAGTTAGCTATA+TGG - chr7_2:6111234-6111253 Msa1045860:intron 40.0%
ACTCTTACCGAGAATGTTGT+AGG + chr7_2:6111458-6111477 None:intergenic 40.0%
!! AAGTTGATGACACTAGTGAC+AGG + chr7_2:6111486-6111505 None:intergenic 40.0%
GTTCCTTAGCACAAAATCCA+AGG + chr7_2:6111562-6111581 None:intergenic 40.0%
! GATTTTGTGCTAAGGAACCA+AGG - chr7_2:6111564-6111583 Msa1045860:intron 40.0%
ATCAAAATTGTCGCATAGGC+AGG + chr7_2:6112136-6112155 None:intergenic 40.0%
CTCTCCGATTCTTCTTTCTC+CGG - chr7_2:6107963-6107982 Msa1045860:three_prime_UTR 45.0%
CTGACCGGAGAAAGAAGAAT+CGG + chr7_2:6107970-6107989 None:intergenic 45.0%
GGTAAAAGCAACGGTAAGAG+TGG - chr7_2:6108161-6108180 Msa1045860:intron 45.0%
TTTCTCCGTTCAAACGACGT+TGG + chr7_2:6108200-6108219 None:intergenic 45.0%
GTCGTTTGAACGGAGAAAGA+TGG - chr7_2:6108202-6108221 Msa1045860:intron 45.0%
TCTTCCATTGCTGTCATTGC+TGG - chr7_2:6108230-6108249 Msa1045860:three_prime_UTR 45.0%
AGTTCCAGCAATGACAGCAA+TGG + chr7_2:6108237-6108256 None:intergenic 45.0%
AGAAGTTCCGAAGAAGGTCA+TGG - chr7_2:6109255-6109274 Msa1045860:intron 45.0%
AAACCGACCATGACCTTCTT+CGG + chr7_2:6109265-6109284 None:intergenic 45.0%
CCGTTTCAGACACACAAACA+AGG + chr7_2:6109294-6109313 None:intergenic 45.0%
TGAAACGGAAAGGAGGAGAA+TGG - chr7_2:6109306-6109325 Msa1045860:intron 45.0%
! TGCAGTTGTGTCGTTACTGA+TGG - chr7_2:6109357-6109376 Msa1045860:intron 45.0%
CTTGAGGAAGGGAAGGATTA+TGG - chr7_2:6109523-6109542 Msa1045860:intron 45.0%
! GATTCGGTTTCTACGTAGTC+TGG + chr7_2:6109568-6109587 None:intergenic 45.0%
GACTACGTAGAAACCGAATC+TGG - chr7_2:6109568-6109587 Msa1045860:intron 45.0%
CGAATCTGGACTCCAGTATA+AGG - chr7_2:6109582-6109601 Msa1045860:intron 45.0%
!!! TTTGGTTTTGGGCCATTTCC+GGG + chr7_2:6109697-6109716 None:intergenic 45.0%
!!! CTTTGGTTTTGGGCCATTTC+CGG + chr7_2:6109698-6109717 None:intergenic 45.0%
TCCATTCAGGTAGATTGGGA+TGG - chr7_2:6110022-6110041 Msa1045860:intron 45.0%
! ATGGTCGCATATTTGAAGCC+CGG - chr7_2:6110062-6110081 Msa1045860:intron 45.0%
GCCCGGAATAAAACAAAAGG+CGG - chr7_2:6110079-6110098 Msa1045860:intron 45.0%
ATTCAAAGTAGGATCGCACG+AGG - chr7_2:6110229-6110248 Msa1045860:intron 45.0%
TCTAGAGGGAAAACCCTTTG+TGG - chr7_2:6110472-6110491 Msa1045860:intron 45.0%
GAGCCAACCAATACTAACGA+AGG + chr7_2:6110545-6110564 None:intergenic 45.0%
ACGATAACACCTTGTGGCAA+GGG + chr7_2:6110687-6110706 None:intergenic 45.0%
! TTGCCACAAGGTGTTATCGT+GGG - chr7_2:6110687-6110706 Msa1045860:intron 45.0%
AAACCCACGATAACACCTTG+TGG + chr7_2:6110693-6110712 None:intergenic 45.0%
! TCAGGATATCCAAGTTCTGG+TGG + chr7_2:6111407-6111426 None:intergenic 45.0%
CTCTCAGGATATCCAAGTTC+TGG + chr7_2:6111410-6111429 None:intergenic 45.0%
CCGAGAATGTTGTAGGTCTT+GGG + chr7_2:6111451-6111470 None:intergenic 45.0%
CCCAAGACCTACAACATTCT+CGG - chr7_2:6111448-6111467 Msa1045860:intron 45.0%
ACCGAGAATGTTGTAGGTCT+TGG + chr7_2:6111452-6111471 None:intergenic 45.0%
! GAGCCTTGGATTTTGTGCTA+AGG - chr7_2:6111556-6111575 Msa1045860:intron 45.0%
! GAGTCTTGTCTATCAACCCT+TGG + chr7_2:6111584-6111603 None:intergenic 45.0%
GTCTTGCTCTGACATGGATT+CGG + chr7_2:6111757-6111776 None:intergenic 45.0%
CAAGACTACCAGTGAACTGA+TGG - chr7_2:6111771-6111790 Msa1045860:intron 45.0%
GTTCCGAAGAAGGTCATGGT+CGG - chr7_2:6109259-6109278 Msa1045860:intron 50.0%
! GTGTGTCTGAAACGGAAAGG+AGG - chr7_2:6109299-6109318 Msa1045860:intron 50.0%
CGTGCTGCATCACCTTATAC+TGG + chr7_2:6109597-6109616 None:intergenic 50.0%
AAATTGCAGGACTTGCGACC+CGG - chr7_2:6109676-6109695 Msa1045860:CDS 50.0%
GCCATCCCAATCTACCTGAA+TGG + chr7_2:6110026-6110045 None:intergenic 50.0%
GATTGGGATGGCTACACCAT+AGG - chr7_2:6110034-6110053 Msa1045860:intron 50.0%
AACAAAAGGCGGTTCCTTCG+AGG - chr7_2:6110090-6110109 Msa1045860:intron 50.0%
TGAAGAGTCTGAACGCCCTT+TGG - chr7_2:6110619-6110638 Msa1045860:intron 50.0%
GAAGAGTCTGAACGCCCTTT+GGG - chr7_2:6110620-6110639 Msa1045860:intron 50.0%
!! TCTGAACGCCCTTTGGGATT+AGG - chr7_2:6110626-6110645 Msa1045860:intron 50.0%
TCGACTTTACCCTTGCCACA+AGG - chr7_2:6110675-6110694 Msa1045860:intron 50.0%
CACGATAACACCTTGTGGCA+AGG + chr7_2:6110688-6110707 None:intergenic 50.0%
! CTTGCCACAAGGTGTTATCG+TGG - chr7_2:6110686-6110705 Msa1045860:intron 50.0%
GCAACAGCCTCTTCAAAAGC+AGG + chr7_2:6110890-6110909 None:intergenic 50.0%
!! GCTTTTGAAGAGGCTGTTGC+AGG - chr7_2:6110890-6110909 Msa1045860:intron 50.0%
ACTTGGACGTAACACAGCTC+AGG + chr7_2:6110981-6111000 None:intergenic 50.0%
GCACAAAATCCAAGGCTCGT+TGG + chr7_2:6111554-6111573 None:intergenic 50.0%
! CTGGTAGTCTTGCTCTGACA+TGG + chr7_2:6111763-6111782 None:intergenic 50.0%
ACATACAGTGCCTGCGCTTG+AGG - chr7_2:6109507-6109526 Msa1045860:intron 55.0%
GCTGTTGCAGGCATGTCTCT+CGG - chr7_2:6110902-6110921 Msa1045860:intron 55.0%
CTGTTGCAGGCATGTCTCTC+GGG - chr7_2:6110903-6110922 Msa1045860:intron 55.0%
TGTTGCAGGCATGTCTCTCG+GGG - chr7_2:6110904-6110923 Msa1045860:intron 55.0%
TTTACAGGGCCAACGAGCCT+TGG - chr7_2:6111542-6111561 Msa1045860:intron 55.0%
ACAGTGCCTGCGCTTGAGGA+AGG - chr7_2:6109511-6109530 Msa1045860:intron 60.0%
CAGTGCCTGCGCTTGAGGAA+GGG - chr7_2:6109512-6109531 Msa1045860:intron 60.0%
TCCTTCCCTTCCTCAAGCGC+AGG + chr7_2:6109520-6109539 None:intergenic 60.0%
CAGGACTTGCGACCCGGAAA+TGG - chr7_2:6109682-6109701 Msa1045860:CDS 60.0%
GTTGCAGGCATGTCTCTCGG+GGG - chr7_2:6110905-6110924 Msa1045860:intron 60.0%
!! TGTCTCTCGGGGGCATTCGA+AGG - chr7_2:6110915-6110934 Msa1045860:intron 60.0%
GCCTGCGCTTGAGGAAGGGA+AGG - chr7_2:6109516-6109535 Msa1045860:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 6107687 6112228 6107687 ID=Msa1045860;Name=Msa1045860
chr7_2 mRNA 6107687 6112228 6107687 ID=Msa1045860-mRNA-1;Parent=Msa1045860;Name=Msa1045860-mRNA-1;_AED=0.32;_eAED=0.32;_QI=124|1|1|1|0.9|0.81|11|462|241
chr7_2 exon 6107687 6108099 6107687 ID=Msa1045860-mRNA-1:exon:1381;Parent=Msa1045860-mRNA-1
chr7_2 exon 6108222 6108366 6108222 ID=Msa1045860-mRNA-1:exon:1380;Parent=Msa1045860-mRNA-1
chr7_2 exon 6108446 6108521 6108446 ID=Msa1045860-mRNA-1:exon:1379;Parent=Msa1045860-mRNA-1
chr7_2 exon 6108979 6109034 6108979 ID=Msa1045860-mRNA-1:exon:1378;Parent=Msa1045860-mRNA-1
chr7_2 exon 6109665 6109709 6109665 ID=Msa1045860-mRNA-1:exon:1377;Parent=Msa1045860-mRNA-1
chr7_2 exon 6109804 6109884 6109804 ID=Msa1045860-mRNA-1:exon:1376;Parent=Msa1045860-mRNA-1
chr7_2 exon 6110180 6110230 6110180 ID=Msa1045860-mRNA-1:exon:1375;Parent=Msa1045860-mRNA-1
chr7_2 exon 6110312 6110400 6110312 ID=Msa1045860-mRNA-1:exon:1374;Parent=Msa1045860-mRNA-1
chr7_2 exon 6111616 6111753 6111616 ID=Msa1045860-mRNA-1:exon:1373;Parent=Msa1045860-mRNA-1
chr7_2 exon 6111931 6111964 6111931 ID=Msa1045860-mRNA-1:exon:1372;Parent=Msa1045860-mRNA-1
chr7_2 exon 6112045 6112228 6112045 ID=Msa1045860-mRNA-1:exon:1371;Parent=Msa1045860-mRNA-1
chr7_2 five_prime_UTR 6112105 6112228 6112105 ID=Msa1045860-mRNA-1:five_prime_utr;Parent=Msa1045860-mRNA-1
chr7_2 CDS 6112045 6112104 6112045 ID=Msa1045860-mRNA-1:cds;Parent=Msa1045860-mRNA-1
chr7_2 CDS 6111931 6111964 6111931 ID=Msa1045860-mRNA-1:cds;Parent=Msa1045860-mRNA-1
chr7_2 CDS 6111616 6111753 6111616 ID=Msa1045860-mRNA-1:cds;Parent=Msa1045860-mRNA-1
chr7_2 CDS 6110312 6110400 6110312 ID=Msa1045860-mRNA-1:cds;Parent=Msa1045860-mRNA-1
chr7_2 CDS 6110180 6110230 6110180 ID=Msa1045860-mRNA-1:cds;Parent=Msa1045860-mRNA-1
chr7_2 CDS 6109804 6109884 6109804 ID=Msa1045860-mRNA-1:cds;Parent=Msa1045860-mRNA-1
chr7_2 CDS 6109665 6109709 6109665 ID=Msa1045860-mRNA-1:cds;Parent=Msa1045860-mRNA-1
chr7_2 CDS 6108979 6109034 6108979 ID=Msa1045860-mRNA-1:cds;Parent=Msa1045860-mRNA-1
chr7_2 CDS 6108446 6108521 6108446 ID=Msa1045860-mRNA-1:cds;Parent=Msa1045860-mRNA-1
chr7_2 CDS 6108271 6108366 6108271 ID=Msa1045860-mRNA-1:cds;Parent=Msa1045860-mRNA-1
chr7_2 three_prime_UTR 6108222 6108270 6108222 ID=Msa1045860-mRNA-1:three_prime_utr;Parent=Msa1045860-mRNA-1
chr7_2 three_prime_UTR 6107687 6108099 6107687 ID=Msa1045860-mRNA-1:three_prime_utr;Parent=Msa1045860-mRNA-1
Gene Sequence

>Msa1045860

ATGGCTTCACTTTTGTCCTTTTCCATTGCTTCTCTTTCTCTACCTAAATCTCAATCTCTGGATCCTGATAATCTCTCCGATTCTTCTTTCTCCGGTAAAAGCAACGGTAAGAGTGGTAGTTGTTGTTTTCCAACGTCGTTTGAACGGAGAAAGATGGTTCTGTCTTCCATTGCTGTCATTGCTGGAACTTTTTGTAAAGGAGGAATTGGTCTTGCATCTGAATTTGCTGACATGCCTGCGCTTGAGGAAGGGAAGGATTATGGCAAATCAAAAATGAAGTACCCAGACTACGTAGAAACCGAATCTGGACTCCAGTATAAGGACTTGCGACCCGGAAATGGCCCAAAACCAAAGAAAGGAGAGACAGTAGTGGTAGATTGGGATGGCTACACCATAGGTTATTATGGTCGCATATTTGAAGCCCGGAATAAAACAAAAGGCGGTTCCTTCGAGGGTGATGATAAGGACTTTTTCAAATTCAAAGTAGGATCGCACGAGGTAATACCTGCTTTTGAAGAGGCTGTTGCAGGCATGTCTCTCGGGGGCATTCGAAGGATAATTGTACCACCAGAACTTGGATATCCTGAGAGTGATTATAATAAAGGTGGCCCAAGACCTACAACATTCTCGGGCCAACGAGCCTTGGATTTTGTGCTAAGGAACCAAGGGTTGATAGACAAGACTCTCTTGTTTGATATTGAGCTAATGAAGATTATTCCAAATTGA

Protein sequence

>Msa1045860

MASLLSFSIASLSLPKSQSLDPDNLSDSSFSGKSNGKSGSCCFPTSFERRKMVLSSIAVIAGTFCKGGIGLASEFADMPALEEGKDYGKSKMKYPDYVETESGLQYKDLRPGNGPKPKKGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDFFKFKVGSHEVIPAFEEAVAGMSLGGIRRIIVPPELGYPESDYNKGGPRPTTFSGQRALDFVLRNQGLIDKTLLFDIELMKIIPN*