AlfalfaGEDB | Msa0036730

M. sativa cultivar zhongmu-4 / Msa0036730

KEGG: -
GO: -
PFAM: PF12819.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0036730	XP_013469415.1	97.484	636	16	0	1	636	1	636	0.0	1284

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0036730	sp\|F4HWL3\|RLP4_ARATH	32.897	611	358	20	37	626	28	607	7.29e-93	302

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000370	Msa0036730	0.805953	1.040762e-49	-8.615850e-47
Msa0013270	Msa0036730	0.814930	1.198868e-51	-8.615850e-47
Msa0025570	Msa0036730	0.804837	1.783009e-49	-8.615850e-47
Msa0036730	Msa0044780	-0.835356	1.760353e-56	-8.615850e-47
Msa0036730	Msa0045810	0.828643	8.019713e-55	-8.615850e-47
Msa0036730	Msa0046200	0.830149	3.455714e-55	-8.615850e-47
Msa0036730	Msa0073110	0.806852	6.725367e-50	-8.615850e-47
Msa0036730	Msa0091090	-0.821369	4.188320e-53	-8.615850e-47
Msa0036730	Msa0106540	0.817920	2.567755e-52	-8.615850e-47
Msa0036730	Msa0139500	0.806938	6.451429e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0036730	MtrunA17_Chr1g0198681	97.484	636	16	0	1	636	1	636	0.0	1284
Msa0036730	MtrunA17_Chr5g0422481	69.291	635	173	7	9	632	17	640	0.0	881
Msa0036730	MtrunA17_Chr2g0282601	34.929	564	342	18	37	590	28	576	1.57e-90	293
Msa0036730	MtrunA17_Chr8g0341151	28.235	510	307	25	6	499	7	473	6.69e-37	147
Msa0036730	MtrunA17_Chr7g0236881	28.664	614	330	28	32	589	22	583	3.97e-36	145
Msa0036730	MtrunA17_Chr1g0205741	28.016	514	322	20	27	527	15	493	1.07e-35	141
Msa0036730	MtrunA17_Chr8g0340871	26.628	522	309	21	4	499	10	483	1.15e-33	137
Msa0036730	MtrunA17_Chr8g0341231	26.426	526	326	23	1	499	12	503	2.15e-32	132
Msa0036730	MtrunA17_Chr8g0340941	26.550	516	316	21	4	499	1	473	4.30e-32	130
Msa0036730	MtrunA17_Chr8g0340881	27.650	434	260	18	84	499	85	482	4.91e-32	132

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0036730	AT1G25570.1	62.437	599	218	7	36	631	28	622	0.0	756
Msa0036730	AT1G28340.1	32.897	611	358	20	37	626	28	607	7.41e-94	302
Msa0036730	AT3G46400.1	26.855	566	336	23	40	588	31	535	2.17e-35	143
Msa0036730	AT2G14440.1	26.936	594	350	27	42	616	34	562	4.40e-35	142
Msa0036730	AT1G51910.1	29.598	473	288	20	53	508	49	493	2.48e-34	140
Msa0036730	AT1G51880.1	28.244	524	319	25	6	508	5	492	6.94e-34	139
Msa0036730	AT1G51880.2	28.244	524	319	25	6	508	23	510	7.39e-34	138
Msa0036730	AT2G14510.2	26.904	617	324	31	40	616	40	569	8.66e-34	138
Msa0036730	AT5G59670.2	27.856	499	303	23	31	508	25	487	9.87e-34	138
Msa0036730	AT5G59670.1	27.856	499	303	23	31	508	25	487	9.87e-34	138

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Find 206 sgRNAs with CRISPR-Local

Find 406 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTTGAAGAGGGTGAG+TGG	0.590546	1_1:+65465488	None:intergenic
AAAACTCTGACAATTTCTTC+CGG	0.411927	1_1:+65465900	None:intergenic
AAAAGATGGGGTTGGAGTGG+AGG	0.382859	1_1:+65466772	None:intergenic
AAAAGGAACGATTATGACTT+TGG	0.411238	1_1:-65462529	Msa0036730:CDS
AAAAGGTGAAGGGAATCCTT+TGG	0.514538	1_1:+65461642	None:intergenic
AAACTTGAGTTCGAATTCCT+TGG	0.395989	1_1:-65464220	Msa0036730:CDS
AAATTTGAGTAGTAATGTTT+TGG	0.265295	1_1:-65465589	Msa0036730:CDS
AACGGCGGTGACGACGGAGG+AGG	0.541688	1_1:-65465811	Msa0036730:CDS
AACTACGGTAGAGTTTCGTG+CGG	0.685030	1_1:-65466011	Msa0036730:CDS
AACTTCATTCTTGTTAACTA+CGG	0.533727	1_1:-65466026	Msa0036730:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAAAAATGACGGTAACTCA+TGG	-	chr1_1:65461327-65461346	Msa0036730:three_prime_UTR	30.0%
AACTTAATCAATCAAGCACT+TGG	-	chr1_1:65461361-65461380	Msa0036730:three_prime_UTR	30.0%
ACCAACGATACTGATAAATT+CGG	-	chr1_1:65462000-65462019	Msa0036730:intron	30.0%
AAAACTCTGACAATTTCTTC+CGG	+	chr1_1:65462063-65462082	None:intergenic	30.0%
AGCTTCATCGGAAAATAATT+CGG	+	chr1_1:65462123-65462142	None:intergenic	30.0%
GATTCAAGTGTGAAAAAAGA+AGG	-	chr1_1:65462243-65462262	Msa0036730:intron	30.0%
TTCTCAATACCACAAATCAA+AGG	+	chr1_1:65462426-65462445	None:intergenic	30.0%
TGTGTGTGATTTATAGCTTA+TGG	-	chr1_1:65462601-65462620	Msa0036730:CDS	30.0%
GTGTGTGATTTATAGCTTAT+GGG	-	chr1_1:65462602-65462621	Msa0036730:CDS	30.0%
AGAGCAAAATAGCAGAAAAT+TGG	+	chr1_1:65462807-65462826	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	65461020	65466962	65461020	ID=Msa0036730;Name=Msa0036730
chr1_1	mRNA	65461020	65466962	65461020	ID=Msa0036730-mRNA-1;Parent=Msa0036730;Name=Msa0036730-mRNA-1;_AED=0.01;_eAED=0.01;_QI=101\|1\|1\|1\|0.88\|0.7\|10\|577\|636
chr1_1	exon	65461020	65461087	65461020	ID=Msa0036730-mRNA-1:exon:21070;Parent=Msa0036730-mRNA-1
chr1_1	exon	65461121	65461736	65461121	ID=Msa0036730-mRNA-1:exon:21069;Parent=Msa0036730-mRNA-1
chr1_1	exon	65462509	65462714	65462509	ID=Msa0036730-mRNA-1:exon:21068;Parent=Msa0036730-mRNA-1
chr1_1	exon	65463197	65463274	65463197	ID=Msa0036730-mRNA-1:exon:21067;Parent=Msa0036730-mRNA-1
chr1_1	exon	65463635	65463703	65463635	ID=Msa0036730-mRNA-1:exon:21066;Parent=Msa0036730-mRNA-1
chr1_1	exon	65464174	65464242	65464174	ID=Msa0036730-mRNA-1:exon:21065;Parent=Msa0036730-mRNA-1
chr1_1	exon	65464715	65464786	65464715	ID=Msa0036730-mRNA-1:exon:21064;Parent=Msa0036730-mRNA-1
chr1_1	exon	65465193	65465343	65465193	ID=Msa0036730-mRNA-1:exon:21063;Parent=Msa0036730-mRNA-1
chr1_1	exon	65465493	65466554	65465493	ID=Msa0036730-mRNA-1:exon:21062;Parent=Msa0036730-mRNA-1
chr1_1	exon	65466765	65466962	65466765	ID=Msa0036730-mRNA-1:exon:21061;Parent=Msa0036730-mRNA-1
chr1_1	five_prime_UTR	65466862	65466962	65466862	ID=Msa0036730-mRNA-1:five_prime_utr;Parent=Msa0036730-mRNA-1
chr1_1	CDS	65466765	65466861	65466765	ID=Msa0036730-mRNA-1:cds;Parent=Msa0036730-mRNA-1
chr1_1	CDS	65465493	65466554	65465493	ID=Msa0036730-mRNA-1:cds;Parent=Msa0036730-mRNA-1
chr1_1	CDS	65465193	65465343	65465193	ID=Msa0036730-mRNA-1:cds;Parent=Msa0036730-mRNA-1
chr1_1	CDS	65464715	65464786	65464715	ID=Msa0036730-mRNA-1:cds;Parent=Msa0036730-mRNA-1
chr1_1	CDS	65464174	65464242	65464174	ID=Msa0036730-mRNA-1:cds;Parent=Msa0036730-mRNA-1
chr1_1	CDS	65463635	65463703	65463635	ID=Msa0036730-mRNA-1:cds;Parent=Msa0036730-mRNA-1
chr1_1	CDS	65463197	65463274	65463197	ID=Msa0036730-mRNA-1:cds;Parent=Msa0036730-mRNA-1
chr1_1	CDS	65462509	65462714	65462509	ID=Msa0036730-mRNA-1:cds;Parent=Msa0036730-mRNA-1
chr1_1	CDS	65461630	65461736	65461630	ID=Msa0036730-mRNA-1:cds;Parent=Msa0036730-mRNA-1
chr1_1	three_prime_UTR	65461121	65461629	65461121	ID=Msa0036730-mRNA-1:three_prime_utr;Parent=Msa0036730-mRNA-1
chr1_1	three_prime_UTR	65461020	65461087	65461020	ID=Msa0036730-mRNA-1:three_prime_utr;Parent=Msa0036730-mRNA-1

Gene Sequence

>Msa0036730

ATGATTCAACTACCCCATTTCTTCCTCTCCTTCTTATTCATCATCACCACCACCATCTCCACCTCCACCTCCACTCCAACCCCATCTTTTCCCTCTGGTAACTTGTCCTCATACCACATTAACTGCGGCACTTCAACAAACATAACAGACCCCTTCAACACAACATGGCTCTCCGACCGTTACTACACCGGCGGCGCCACCACCACCGTCTCGGAGCCACTCCGTTTCAACCTCCCCTCAGAAAAAACTCTCCGCTTCTTCCCTTCCTCCTCCTCCGGCAAAAAAAACTGCTACTCATTCCCCTCACTTCCTTCTTCTCGCTACCTCCTCCGCACCTTCACCGTCTACGACAACTACGACGCAAAGTCTCGTCCTCCTTCCTTCGACGTTGCACTCTCCTCCACCATCATTTTCAACTGGCGTTCTCCATGGCCTGAATCCACCGCACGCGACGGCGCTTATGCTGATCTTTTCGCTTTTCTTCACACTCCCTCCGCCGCTGATCTTTGCTTCTACGGCTTCGCTACCGATGCTCCGATCATCTCATCAATCGAACTCATTCCTGTAAATTCCGCTTCGTATGATTCTAACTCCACCGGTGAAAACTTCATTCTTGTTAACTACGGTAGAGTTTCGTGCGGCTCCGGTGATCATTGGGGCGCCGGCTTCACCAACGATACTGATAAATTCGGCCGGTCATGGCAGCCGGATGAAGCATTCCGAACCGAACCGGAAGAAATTGTCAGAGTTTTATCAACAGAGAACACCGTGAATGGTACTGAAAAGGAGCCGAATTATTTTCCGATGAAGCTTTACCAAACGGCGGTGACGACGGAGGAGGAGACGTTGGAGTACGAATTGAGTGTGGATGCGAAGATGGACTATATGGTGTGGCTGCATTTCGCGGAGATTGATTCAAGTGTGAAAAAAGAAGGAGAGAGAGTTTTTGATGTGTTTATCAATGGAAATAATGTAACAAGAGTTGATATTTACAAAGAAGTGGGAAGTTTTGCTGCTTTTACTTGGCATTATACTGTGAAAAATTTGAGTAGTAATGTTTTGGGGATTAAGCTTGTTGCTGTTTCTGGTGCTCCTTTGATTTGTGGTATTGAGAATTATGCATTGGTGCTCAATGAACCTTCCACTCACCCTCTTCAAGTAAGTGCTATGAAGGCATTGAAGGAATCGCTTCGAGTTCCAGGTAGAATGGGATGGAATGGTGATCCCTGTGCTCCTACAACTTGGGATGCTTGGGAAGGTGTTACCTGCCGTATGAGTGATGATAAAACTGCTCTCCTCATTACTGAAATAAATCTTGGCAGTCAAGGCTTAAAAGGGAACGTAAGTGATCAGATTAGTCTTTTGTCAGATTTGGTAACCCTAAACTTGAGTTCGAATTCCTTGGGGGGTGAAATACCATCAGGACTGGGTCAAAAATCCCTGATACAAGTGGATTTATCCAATAATCACTTAACCGGCTCTATACCTGACAGTTTGGCATCTTCAACATTGCAGCTTGTGCTATTGAATGGTAACCTACTGGAAGGACGAGTGCCAGAGCAACTTTATTCTGTTGGCGTGCACGGTGGAGCTATTGATCTCTCAAGCAACAAGGGTTTGTGTGGTGTACCATCTCTATCATCATGTCCTATGTTTTGGGAGCATGGCGGATTATCGACTCGGGGTAAAATTGCAATAGTCTTTTCATGTCTTTTTGTTTTCTGCGTGGTACTGCTGCTGGTATATATCTACATCAGAAAGAAAAGGAACGATTATGACTTTGGTCTACCCCATGAAGTAATGGCTCTAGCTGCCAAGAGAAACAAATATCAGAGGCAGAAATCATTGATGATTCTTGAGCTGGAGAGTCAACACGCCAAAGGATTCCCTTCACCTTTTACTCCTCTATAG

Protein sequence

>Msa0036730

MIQLPHFFLSFLFIITTTISTSTSTPTPSFPSGNLSSYHINCGTSTNITDPFNTTWLSDRYYTGGATTTVSEPLRFNLPSEKTLRFFPSSSSGKKNCYSFPSLPSSRYLLRTFTVYDNYDAKSRPPSFDVALSSTIIFNWRSPWPESTARDGAYADLFAFLHTPSAADLCFYGFATDAPIISSIELIPVNSASYDSNSTGENFILVNYGRVSCGSGDHWGAGFTNDTDKFGRSWQPDEAFRTEPEEIVRVLSTENTVNGTEKEPNYFPMKLYQTAVTTEEETLEYELSVDAKMDYMVWLHFAEIDSSVKKEGERVFDVFINGNNVTRVDIYKEVGSFAAFTWHYTVKNLSSNVLGIKLVAVSGAPLICGIENYALVLNEPSTHPLQVSAMKALKESLRVPGRMGWNGDPCAPTTWDAWEGVTCRMSDDKTALLITEINLGSQGLKGNVSDQISLLSDLVTLNLSSNSLGGEIPSGLGQKSLIQVDLSNNHLTGSIPDSLASSTLQLVLLNGNLLEGRVPEQLYSVGVHGGAIDLSSNKGLCGVPSLSSCPMFWEHGGLSTRGKIAIVFSCLFVFCVVLLLVYIYIRKKRNDYDFGLPHEVMALAAKRNKYQRQKSLMILELESQHAKGFPSPFTPL*