Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585610 | AES64297.1 | 79.859 | 566 | 112 | 1 | 1 | 566 | 14 | 577 | 0.0 | 942 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585610 | sp|Q9SWH5|FUT1_ARATH | 45.946 | 481 | 241 | 5 | 92 | 563 | 88 | 558 | 2.41e-144 | 431 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0585610 | 0.805074 | 1.590779e-49 | -8.615850e-47 |
| Msa0153910 | Msa0585610 | 0.821250 | 4.460704e-53 | -8.615850e-47 |
| Msa0157290 | Msa0585610 | 0.804829 | 1.790308e-49 | -8.615850e-47 |
| Msa0402290 | Msa0585610 | 0.806417 | 8.310745e-50 | -8.615850e-47 |
| Msa0562440 | Msa0585610 | 0.808281 | 3.344643e-50 | -8.615850e-47 |
| Msa0585610 | Msa0657970 | 0.807393 | 5.167306e-50 | -8.615850e-47 |
| Msa0585610 | Msa0806090 | 0.808852 | 2.526941e-50 | -8.615850e-47 |
| Msa0585610 | Msa0880140 | 0.803455 | 3.458151e-49 | -8.615850e-47 |
| Msa0585610 | Msa0885280 | 0.815490 | 9.000483e-52 | -8.615850e-47 |
| Msa0585610 | Msa0897880 | 0.817126 | 3.876142e-52 | -8.615850e-47 |
| Msa0585610 | Msa0965750 | 0.806076 | 9.804117e-50 | -8.615850e-47 |
| Msa0585610 | Msa0983090 | 0.819228 | 1.296457e-52 | -8.615850e-47 |
| Msa0585610 | Msa1000900 | 0.810622 | 1.051712e-50 | -8.615850e-47 |
| Msa0585610 | Msa1075220 | -0.800418 | 1.454885e-48 | -8.615850e-47 |
| Msa0585610 | Msa1082500 | 0.818670 | 1.736907e-52 | -8.615850e-47 |
| Msa0585610 | Msa1136090 | 0.805567 | 1.254351e-49 | -8.615850e-47 |
| Msa0585610 | Msa1162550 | -0.803853 | 2.859667e-49 | -8.615850e-47 |
| Msa0585610 | Msa1205130 | 0.801303 | 9.597793e-49 | -8.615850e-47 |
| Msa0585610 | Msa1233890 | 0.813970 | 1.954545e-51 | -8.615850e-47 |
| Msa0585610 | Msa1249490 | 0.818118 | 2.315935e-52 | -8.615850e-47 |
| Msa0585610 | Msa1284680 | 0.812293 | 4.559221e-51 | -8.615850e-47 |
| Msa0585610 | Msa1359040 | 0.809612 | 1.736391e-50 | -8.615850e-47 |
| Msa0585610 | Msa1451620 | -0.809679 | 1.679574e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585610 | MtrunA17_Chr2g0286741 | 79.859 | 566 | 112 | 1 | 1 | 566 | 14 | 577 | 0.0 | 942 |
| Msa0585610 | MtrunA17_Chr4g0001511 | 57.288 | 590 | 211 | 9 | 1 | 565 | 136 | 709 | 0.0 | 679 |
| Msa0585610 | MtrunA17_Chr1g0196981 | 53.239 | 494 | 215 | 7 | 78 | 565 | 3 | 486 | 0.0 | 527 |
| Msa0585610 | MtrunA17_Chr8g0388711 | 51.064 | 470 | 219 | 4 | 99 | 564 | 120 | 582 | 2.34e-172 | 501 |
| Msa0585610 | MtrunA17_Chr4g0060941 | 42.166 | 517 | 261 | 8 | 70 | 565 | 77 | 576 | 8.85e-141 | 419 |
| Msa0585610 | MtrunA17_Chr3g0091781 | 43.789 | 475 | 249 | 6 | 99 | 566 | 73 | 536 | 6.90e-135 | 403 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585610 | AT2G03220.1 | 45.946 | 481 | 241 | 5 | 92 | 563 | 88 | 558 | 2.45e-145 | 431 |
| Msa0585610 | AT2G03210.3 | 44.737 | 494 | 256 | 6 | 85 | 565 | 80 | 569 | 1.78e-138 | 414 |
| Msa0585610 | AT2G03210.1 | 44.467 | 497 | 256 | 6 | 85 | 565 | 46 | 538 | 2.31e-138 | 412 |
| Msa0585610 | AT2G03210.2 | 44.467 | 497 | 256 | 6 | 85 | 565 | 80 | 572 | 4.68e-138 | 413 |
| Msa0585610 | AT1G14100.1 | 42.430 | 502 | 260 | 8 | 79 | 564 | 26 | 514 | 3.52e-135 | 403 |
| Msa0585610 | AT2G15350.1 | 41.141 | 491 | 266 | 8 | 90 | 565 | 31 | 513 | 1.71e-131 | 394 |
| Msa0585610 | AT2G15390.1 | 42.171 | 479 | 260 | 8 | 98 | 565 | 30 | 502 | 3.13e-131 | 393 |
| Msa0585610 | AT2G15390.2 | 42.171 | 479 | 260 | 8 | 98 | 565 | 62 | 534 | 3.37e-131 | 394 |
| Msa0585610 | AT1G14080.1 | 42.276 | 492 | 267 | 10 | 85 | 565 | 51 | 536 | 9.26e-130 | 390 |
| Msa0585610 | AT2G15370.1 | 41.093 | 494 | 268 | 10 | 87 | 565 | 47 | 532 | 1.30e-129 | 390 |
| Msa0585610 | AT1G14110.1 | 39.130 | 506 | 236 | 9 | 77 | 566 | 22 | 471 | 8.30e-117 | 355 |
| Msa0585610 | AT1G74420.1 | 38.596 | 456 | 257 | 9 | 87 | 535 | 80 | 519 | 5.41e-97 | 305 |
| Msa0585610 | AT1G74420.2 | 39.220 | 436 | 243 | 8 | 106 | 535 | 104 | 523 | 6.25e-97 | 305 |
| Msa0585610 | AT1G74420.4 | 38.596 | 456 | 257 | 9 | 87 | 535 | 118 | 557 | 2.22e-96 | 305 |
| Msa0585610 | AT1G74420.3 | 39.220 | 436 | 243 | 8 | 106 | 535 | 142 | 561 | 4.03e-96 | 304 |
Find 91 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAATTATTGCAAACTTTA+AGG | 0.066456 | 4_2:-6623267 | Msa0585610:CDS |
| CAACATGCAAATACATTATT+TGG | 0.138302 | 4_2:-6623217 | Msa0585610:CDS |
| ATGAAGCCATGCTAATTATT+TGG | 0.174712 | 4_2:+6623171 | None:intergenic |
| CGCGTTATGCTCGTACAATT+TGG | 0.189962 | 4_2:-6623122 | Msa0585610:CDS |
| ATTGCAAACTTTAAGGAAAA+TGG | 0.194120 | 4_2:-6623260 | Msa0585610:CDS |
| ATAAACCAAAACTAGAATTT+TGG | 0.219730 | 4_2:+6625337 | None:intergenic |
| CTAAGTTTAGATAACAAATA+TGG | 0.251209 | 4_2:+6623350 | None:intergenic |
| CTTCATTTGAAGGGTGAAAA+AGG | 0.261704 | 4_2:+6622733 | None:intergenic |
| GGTTATGTTGCTAAGGGTTT+AGG | 0.269030 | 4_2:-6622273 | Msa0585610:CDS |
| ACTACTTATCAATCTACTTT+TGG | 0.276523 | 4_2:-6622294 | Msa0585610:CDS |
| ATGTACCAAAATTCTAGTTT+TGG | 0.323214 | 4_2:-6625342 | Msa0585610:CDS |
| ACGAATAAATCCACGGTTAC+TGG | 0.324365 | 4_2:-6622435 | Msa0585610:CDS |
| ACATCGTTTGCATCCCAAAA+AGG | 0.325033 | 4_2:+6623032 | None:intergenic |
| TCCCTTCATTGTCATACCTT+TGG | 0.326253 | 4_2:+6625302 | None:intergenic |
| AAGTCATTTGTTGTAACATT+TGG | 0.339662 | 4_2:+6625249 | None:intergenic |
| TTACAATCCGATTCAAAGTA+AGG | 0.348324 | 4_2:-6622229 | Msa0585610:CDS |
| GCGTTATGCTCGTACAATTT+GGG | 0.367692 | 4_2:-6623121 | Msa0585610:CDS |
| ATTATTTGGTTACCAGCAAA+TGG | 0.368350 | 4_2:-6623203 | Msa0585610:CDS |
| TGGTTACCTAACCCATTTGC+TGG | 0.377468 | 4_2:+6623191 | None:intergenic |
| CGAATAAATCCACGGTTACT+GGG | 0.380790 | 4_2:-6622434 | Msa0585610:CDS |
| ACTAAGTTTATCCGATGTAT+TGG | 0.382364 | 4_2:-6622319 | Msa0585610:CDS |
| ACGTCTTTATATCCACAATA+TGG | 0.395280 | 4_2:-6622480 | Msa0585610:CDS |
| TGCTCCCATGCTTCATTTGA+AGG | 0.397906 | 4_2:+6622723 | None:intergenic |
| GCATTGTAAGGATTATCCTT+GGG | 0.400787 | 4_2:-6622097 | Msa0585610:CDS |
| CAAATCTCCTTACTTTGAAT+CGG | 0.407874 | 4_2:+6622222 | None:intergenic |
| GACAAAGAGAAATTGCTTGA+TGG | 0.411137 | 4_2:-6623461 | Msa0585610:CDS |
| TCATAATATTAGGCATTGTA+AGG | 0.412544 | 4_2:-6622109 | Msa0585610:CDS |
| CAACCAAGTTGAATTTAGAA+AGG | 0.415217 | 4_2:+6623070 | None:intergenic |
| TGGTTACCAGCAAATGGGTT+AGG | 0.418133 | 4_2:-6623197 | Msa0585610:CDS |
| AATGTTACAACAAATGACTT+TGG | 0.418486 | 4_2:-6625246 | Msa0585610:CDS |
| GGCATTGTAAGGATTATCCT+TGG | 0.427969 | 4_2:-6622098 | Msa0585610:CDS |
| TCGTTGAAAGCTCTAGTGTT+TGG | 0.440235 | 4_2:+6623296 | None:intergenic |
| ATCTCTTCCAGTAGTTATCA+TGG | 0.443991 | 4_2:-6625373 | Msa0585610:CDS |
| AACCAAGTTGAATTTAGAAA+GGG | 0.448897 | 4_2:+6623071 | None:intergenic |
| CAACAAATGACTTTGGATCA+AGG | 0.477664 | 4_2:-6625239 | Msa0585610:CDS |
| GTTTGTGTGGAGATGGTTTG+TGG | 0.478759 | 4_2:+6623378 | None:intergenic |
| GGAGAAGGTTTGTGTGGAGA+TGG | 0.482212 | 4_2:+6623371 | None:intergenic |
| GAAGAAGCAACATCTTCAAA+AGG | 0.485264 | 4_2:+6622135 | None:intergenic |
| AAAGTAACCATGATAACTAC+TGG | 0.487007 | 4_2:+6625366 | None:intergenic |
| TAAGCATAATATGAAGGCTT+GGG | 0.491354 | 4_2:-6622355 | Msa0585610:CDS |
| GGTTACTGGGGAAGTAATTG+AGG | 0.491662 | 4_2:-6622421 | Msa0585610:CDS |
| GCTCCTTCACATTATTGTGA+TGG | 0.493301 | 4_2:-6622162 | Msa0585610:CDS |
| CTCCAAAGGTATGACAATGA+AGG | 0.500556 | 4_2:-6625304 | Msa0585610:CDS |
| AACCCTTTCTAAATTCAACT+TGG | 0.506704 | 4_2:-6623073 | Msa0585610:CDS |
| ATGAATCATCGTGCATAAGC+AGG | 0.513277 | 4_2:-6623418 | Msa0585610:CDS |
| TTCACCCTTCAAATGAAGCA+TGG | 0.516704 | 4_2:-6622728 | Msa0585610:CDS |
| TTTAAATTATCACCATATTG+TGG | 0.517552 | 4_2:+6622468 | None:intergenic |
| TTAGATAACAAATATGGAGA+AGG | 0.518574 | 4_2:+6623356 | None:intergenic |
| AAATTTGATTCATAACAACT+TGG | 0.522877 | 4_2:+6622610 | None:intergenic |
| ATTTCTTTACGCGCTGCTAA+CGG | 0.527258 | 4_2:-6623147 | Msa0585610:CDS |
| TCACCCTTCAAATGAAGCAT+GGG | 0.529417 | 4_2:-6622727 | Msa0585610:CDS |
| TTATTTGGTTACCAGCAAAT+GGG | 0.533021 | 4_2:-6623202 | Msa0585610:CDS |
| ATAAGCATAATATGAAGGCT+TGG | 0.534416 | 4_2:-6622356 | Msa0585610:CDS |
| GAAGAAAATCATAGAAAATG+TGG | 0.536204 | 4_2:-6623320 | Msa0585610:CDS |
| GCTAAAGCAAATGAGAGGAT+AGG | 0.543582 | 4_2:-6622672 | Msa0585610:CDS |
| AAGTTACTTCCAAAAGTACT+TGG | 0.548225 | 4_2:-6622567 | Msa0585610:CDS |
| TGATAATAAGCATAATATGA+AGG | 0.549269 | 4_2:-6622361 | Msa0585610:CDS |
| GTTTAGGAAATTCAAGACCA+TGG | 0.558712 | 4_2:-6622257 | Msa0585610:CDS |
| TCCAAAGGTATGACAATGAA+GGG | 0.559085 | 4_2:-6625303 | Msa0585610:CDS |
| CATTGTAAGGATTATCCTTG+GGG | 0.560546 | 4_2:-6622096 | Msa0585610:CDS |
| TTTGCCATCAGCAATGTATG+TGG | 0.569123 | 4_2:-6622955 | Msa0585610:CDS |
| AGGTAACCAAATAATTAGCA+TGG | 0.574006 | 4_2:-6623177 | Msa0585610:CDS |
| ATATCAAAGCACAATTGAGA+TGG | 0.574872 | 4_2:-6623003 | Msa0585610:CDS |
| ATCGGATTGTAAAGAATCCA+TGG | 0.576091 | 4_2:+6622240 | None:intergenic |
| TGATTCATAACAACTTGGTG+TGG | 0.577386 | 4_2:+6622615 | None:intergenic |
| TTGTGAACGTGAATTTACAT+TGG | 0.579467 | 4_2:-6622202 | Msa0585610:CDS |
| AGGTATGACAATGAAGGGAA+TGG | 0.583652 | 4_2:-6625298 | Msa0585610:CDS |
| CAATTTGGGAAAGACAAAGA+AGG | 0.583871 | 4_2:-6623107 | Msa0585610:CDS |
| TTATTTGAGGAGTTCTCCAA+AGG | 0.584814 | 4_2:-6625318 | Msa0585610:CDS |
| TATGTGGATCTAAGATATAG+TGG | 0.584934 | 4_2:-6622939 | Msa0585610:CDS |
| AATATGGTGATAATTTAAAG+AGG | 0.586731 | 4_2:-6622464 | Msa0585610:CDS |
| CAAATGAACGTTATAGCGGG+AGG | 0.591583 | 4_2:-6625273 | Msa0585610:CDS |
| AAATATGGAGAAGGTTTGTG+TGG | 0.593964 | 4_2:+6623365 | None:intergenic |
| AGATCCACATACATTGCTGA+TGG | 0.594260 | 4_2:+6622951 | None:intergenic |
| GCTCAAATGAACGTTATAGC+GGG | 0.596745 | 4_2:-6625276 | Msa0585610:CDS |
| TAGTTTCTATCAACAACACT+TGG | 0.599504 | 4_2:-6622694 | Msa0585610:CDS |
| GGCTCAAATGAACGTTATAG+CGG | 0.614171 | 4_2:-6625277 | Msa0585610:CDS |
| AATTACTTCCCCAGTAACCG+TGG | 0.628418 | 4_2:+6622425 | None:intergenic |
| GCTCCCATGCTTCATTTGAA+GGG | 0.629834 | 4_2:+6622724 | None:intergenic |
| TTTCCATCACAATAATGTGA+AGG | 0.632191 | 4_2:+6622159 | None:intergenic |
| GAATAAATCCACGGTTACTG+GGG | 0.645457 | 4_2:-6622433 | Msa0585610:CDS |
| ACTTGGCTAAAGCAAATGAG+AGG | 0.649462 | 4_2:-6622677 | Msa0585610:CDS |
| AAATGAACGTTATAGCGGGA+GGG | 0.650116 | 4_2:-6625272 | Msa0585610:CDS |
| TACTGAGAAGAAATTGACTG+TGG | 0.652645 | 4_2:+6622886 | None:intergenic |
| ATAAGTAGTTACCAATACAT+CGG | 0.653623 | 4_2:+6622308 | None:intergenic |
| GAAGGAGCATAATGATAACA+AGG | 0.653782 | 4_2:+6622177 | None:intergenic |
| GATGTATACGAATAAATCCA+CGG | 0.654523 | 4_2:-6622442 | Msa0585610:CDS |
| ATTGAGGTTTATCAACCAAG+TGG | 0.671210 | 4_2:-6622405 | Msa0585610:CDS |
| CAAATTGTACGAGCATAACG+CGG | 0.674268 | 4_2:+6623123 | None:intergenic |
| TCAAGGCAGAATGTAACACA+TGG | 0.691709 | 4_2:-6625222 | Msa0585610:CDS |
| ATTGTAAGGATTATCCTTGG+GGG | 0.698760 | 4_2:-6622095 | Msa0585610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGATTGATAAAATTTAAAA+GGG | + | chr4_2:6622780-6622799 | None:intergenic | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | - | chr4_2:6623168-6623187 | Msa0585610:CDS | 10.0% |
| !! | AAGAAAAATGTATAAATAAA+GGG | - | chr4_2:6623169-6623188 | Msa0585610:CDS | 10.0% |
| !! | CAAATAAAAGATTATAAAAT+AGG | - | chr4_2:6623414-6623433 | Msa0585610:CDS | 10.0% |
| !!! | AATCATTTTATAAATGAAAT+AGG | + | chr4_2:6623461-6623480 | None:intergenic | 10.0% |
| !!! | TAATTTTCTTTGTAAAATCA+TGG | + | chr4_2:6622479-6622498 | None:intergenic | 15.0% |
| !! | CATGATTGATAAAATTTAAA+AGG | + | chr4_2:6622781-6622800 | None:intergenic | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | - | chr4_2:6623170-6623189 | Msa0585610:CDS | 15.0% |
| !!! | ATAAACCAAAACTAGAATTT+TGG | + | chr4_2:6622118-6622137 | None:intergenic | 20.0% |
| !!! | GTTTTACTTACTCTTAAATT+TGG | + | chr4_2:6622285-6622304 | None:intergenic | 20.0% |
| !!! | ATAAACGAATTTTCTATCAA+TGG | - | chr4_2:6622614-6622633 | Msa0585610:CDS | 20.0% |
| !!! | TGTCTAAATACTTTTGATTT+GGG | + | chr4_2:6622695-6622714 | None:intergenic | 20.0% |
| !!! | TTGTCTAAATACTTTTGATT+TGG | + | chr4_2:6622696-6622715 | None:intergenic | 20.0% |
| !! | TATTTAACTAAATAGTCTAG+TGG | - | chr4_2:6622963-6622982 | Msa0585610:CDS | 20.0% |
| !! | ATTTAACTAAATAGTCTAGT+GGG | - | chr4_2:6622964-6622983 | Msa0585610:CDS | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | - | chr4_2:6623193-6623212 | Msa0585610:CDS | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | - | chr4_2:6623266-6623285 | Msa0585610:CDS | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+GGG | - | chr4_2:6623267-6623286 | Msa0585610:CDS | 20.0% |
| !! | AATGATTATTCAACACAAAT+AGG | - | chr4_2:6623474-6623493 | Msa0585610:CDS | 20.0% |
| !!! | AATCTATTAGATTTTCGATT+TGG | - | chr4_2:6623632-6623651 | Msa0585610:intron | 20.0% |
| !! | CATTAAGTGTGAAAAAAAAA+TGG | + | chr4_2:6623763-6623782 | None:intergenic | 20.0% |
| !! | CTAAGTTTAGATAACAAATA+TGG | + | chr4_2:6624105-6624124 | None:intergenic | 20.0% |
| !! | GAAAATTATTGCAAACTTTA+AGG | - | chr4_2:6624185-6624204 | Msa0585610:intron | 20.0% |
| !!! | TAAAATTCCTATGTTGTTTT+TGG | - | chr4_2:6624587-6624606 | Msa0585610:intron | 20.0% |
| !!! | TTTAACTCTTTTTCGAAAAT+TGG | + | chr4_2:6624651-6624670 | None:intergenic | 20.0% |
| !! | AAATTTGATTCATAACAACT+TGG | + | chr4_2:6624845-6624864 | None:intergenic | 20.0% |
| !! | TTTAAATTATCACCATATTG+TGG | + | chr4_2:6624987-6625006 | None:intergenic | 20.0% |
| !! | AATATGGTGATAATTTAAAG+AGG | - | chr4_2:6624988-6625007 | Msa0585610:intron | 20.0% |
| !! | TGATAATAAGCATAATATGA+AGG | - | chr4_2:6625091-6625110 | Msa0585610:intron | 20.0% |
| !!! | CTTCTTCTTTTCATAATATT+AGG | - | chr4_2:6625333-6625352 | Msa0585610:CDS | 20.0% |
| !!! | ATGTACCAAAATTCTAGTTT+TGG | - | chr4_2:6622110-6622129 | Msa0585610:CDS | 25.0% |
| !!! | TTCTAGTTTTGGTTTATTTG+AGG | - | chr4_2:6622121-6622140 | Msa0585610:CDS | 25.0% |
| !!! | AAGTCATTTGTTGTAACATT+TGG | + | chr4_2:6622206-6622225 | None:intergenic | 25.0% |
| ! | AATGTTACAACAAATGACTT+TGG | - | chr4_2:6622206-6622225 | Msa0585610:CDS | 25.0% |
| !!! | TTCGTTTTCTTTGTTTGTTA+AGG | - | chr4_2:6622324-6622343 | Msa0585610:CDS | 25.0% |
| ! | TCACAAAAGTTGTTAGAAAA+TGG | - | chr4_2:6622571-6622590 | Msa0585610:CDS | 25.0% |
| !!! | GTCTAAATACTTTTGATTTG+GGG | + | chr4_2:6622694-6622713 | None:intergenic | 25.0% |
| ! | TGCCCAAATAAATTTCATTT+GGG | - | chr4_2:6622805-6622824 | Msa0585610:CDS | 25.0% |
| ! | ACCCCAAATGAAATTTATTT+GGG | + | chr4_2:6622810-6622829 | None:intergenic | 25.0% |
| ! | AACCCCAAATGAAATTTATT+TGG | + | chr4_2:6622811-6622830 | None:intergenic | 25.0% |
| ! | AAACTGTAATTTACATGCTA+AGG | + | chr4_2:6622886-6622905 | None:intergenic | 25.0% |
| ! | TTTAACTAAATAGTCTAGTG+GGG | - | chr4_2:6622965-6622984 | Msa0585610:CDS | 25.0% |
| ! | TTGTGTCAATTAAATTGAGA+CGG | + | chr4_2:6623129-6623148 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | - | chr4_2:6623192-6623211 | Msa0585610:CDS | 25.0% |
| !!! | GGACACTTTTTTTAGAAAAT+GGG | - | chr4_2:6623302-6623321 | Msa0585610:CDS | 25.0% |
| ! | AAAAAAAAATGGATAGTTGC+AGG | + | chr4_2:6623752-6623771 | None:intergenic | 25.0% |
| !!! | TGTAGCAACTTTCATTTTTT+TGG | + | chr4_2:6623816-6623835 | None:intergenic | 25.0% |
| ! | AGAATTGCGATAAACAAAAT+CGG | + | chr4_2:6623860-6623879 | None:intergenic | 25.0% |
| ! | GTAAATTGTTAGTAAGTAGT+GGG | + | chr4_2:6623883-6623902 | None:intergenic | 25.0% |
| ! | AGTAAATTGTTAGTAAGTAG+TGG | + | chr4_2:6623884-6623903 | None:intergenic | 25.0% |
| ! | ACAATTTACTGTGATATTCT+TGG | - | chr4_2:6623894-6623913 | Msa0585610:intron | 25.0% |
| ! | ATATTCTTGGCATAATCTAT+AGG | - | chr4_2:6623907-6623926 | Msa0585610:intron | 25.0% |
| ! | TATTCTTGGCATAATCTATA+GGG | - | chr4_2:6623908-6623927 | Msa0585610:intron | 25.0% |
| !! | ATTTGCGAATGCAATATTTT+TGG | + | chr4_2:6623935-6623954 | None:intergenic | 25.0% |
| ! | TTAGATAACAAATATGGAGA+AGG | + | chr4_2:6624099-6624118 | None:intergenic | 25.0% |
| ! | GAAGAAAATCATAGAAAATG+TGG | - | chr4_2:6624132-6624151 | Msa0585610:intron | 25.0% |
| !! | ATTGCAAACTTTAAGGAAAA+TGG | - | chr4_2:6624192-6624211 | Msa0585610:intron | 25.0% |
| ! | CAACATGCAAATACATTATT+TGG | - | chr4_2:6624235-6624254 | Msa0585610:intron | 25.0% |
| !! | AACCAAGTTGAATTTAGAAA+GGG | + | chr4_2:6624384-6624403 | None:intergenic | 25.0% |
| !!! | TTTTTTGTACCAAGTACTTT+TGG | + | chr4_2:6624897-6624916 | None:intergenic | 25.0% |
| ! | ATAAGTAGTTACCAATACAT+CGG | + | chr4_2:6625147-6625166 | None:intergenic | 25.0% |
| !! | ACTACTTATCAATCTACTTT+TGG | - | chr4_2:6625158-6625177 | Msa0585610:intron | 25.0% |
| !! | TCATAATATTAGGCATTGTA+AGG | - | chr4_2:6625343-6625362 | Msa0585610:CDS | 25.0% |
| AAAGTAACCATGATAACTAC+TGG | + | chr4_2:6622089-6622108 | None:intergenic | 30.0% | |
| TAAAATCATGGTTGTCAATG+TGG | + | chr4_2:6622467-6622486 | None:intergenic | 30.0% | |
| ! | ACTTTCTCTCTCTATTGTTT+TGG | + | chr4_2:6622518-6622537 | None:intergenic | 30.0% |
| GTCTAGTTAGGAGAAATAAT+TGG | - | chr4_2:6622658-6622677 | Msa0585610:CDS | 30.0% | |
| GTGCCCAAATAAATTTCATT+TGG | - | chr4_2:6622804-6622823 | Msa0585610:CDS | 30.0% | |
| GCCCAAATAAATTTCATTTG+GGG | - | chr4_2:6622806-6622825 | Msa0585610:CDS | 30.0% | |
| CTATATAAGACTTACTCATC+CGG | - | chr4_2:6622835-6622854 | Msa0585610:CDS | 30.0% | |
| ATATAAATGTCACTCCAAGT+GGG | + | chr4_2:6622913-6622932 | None:intergenic | 30.0% | |
| TATATAAATGTCACTCCAAG+TGG | + | chr4_2:6622914-6622933 | None:intergenic | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | - | chr4_2:6623177-6623196 | Msa0585610:CDS | 30.0% | |
| ! | TTGAAATGGGTCAGTTATTT+TGG | - | chr4_2:6623280-6623299 | Msa0585610:CDS | 30.0% |
| !! | TGAAATGGGTCAGTTATTTT+GGG | - | chr4_2:6623281-6623300 | Msa0585610:CDS | 30.0% |
| !!! | GGGACACTTTTTTTAGAAAA+TGG | - | chr4_2:6623301-6623320 | Msa0585610:CDS | 30.0% |
| CAATTTAGATAGTAGATGCA+AGG | - | chr4_2:6623696-6623715 | Msa0585610:intron | 30.0% | |
| ATTATTTGGTTACCAGCAAA+TGG | - | chr4_2:6624249-6624268 | Msa0585610:intron | 30.0% | |
| TTATTTGGTTACCAGCAAAT+GGG | - | chr4_2:6624250-6624269 | Msa0585610:intron | 30.0% | |
| AGGTAACCAAATAATTAGCA+TGG | - | chr4_2:6624275-6624294 | Msa0585610:intron | 30.0% | |
| ATGAAGCCATGCTAATTATT+TGG | + | chr4_2:6624284-6624303 | None:intergenic | 30.0% | |
| AACCCTTTCTAAATTCAACT+TGG | - | chr4_2:6624379-6624398 | Msa0585610:intron | 30.0% | |
| ! | CAACCAAGTTGAATTTAGAA+AGG | + | chr4_2:6624385-6624404 | None:intergenic | 30.0% |
| ATATCAAAGCACAATTGAGA+TGG | - | chr4_2:6624449-6624468 | Msa0585610:intron | 30.0% | |
| ! | TATGTGGATCTAAGATATAG+TGG | - | chr4_2:6624513-6624532 | Msa0585610:intron | 30.0% |
| !! | ATTGGTGTCATGAAAAATGA+AGG | + | chr4_2:6624633-6624652 | None:intergenic | 30.0% |
| TGAAAAACTGAGGTAATTTC+AGG | + | chr4_2:6624684-6624703 | None:intergenic | 30.0% | |
| TAGTTTCTATCAACAACACT+TGG | - | chr4_2:6624758-6624777 | Msa0585610:intron | 30.0% | |
| !! | AAGTTACTTCCAAAAGTACT+TGG | - | chr4_2:6624885-6624904 | Msa0585610:intron | 30.0% |
| TTCTAGCGACAAAAACAAAA+CGG | - | chr4_2:6624929-6624948 | Msa0585610:intron | 30.0% | |
| ACGTCTTTATATCCACAATA+TGG | - | chr4_2:6624972-6624991 | Msa0585610:intron | 30.0% | |
| GATGTATACGAATAAATCCA+CGG | - | chr4_2:6625010-6625029 | Msa0585610:intron | 30.0% | |
| ATAAGCATAATATGAAGGCT+TGG | - | chr4_2:6625096-6625115 | Msa0585610:intron | 30.0% | |
| TAAGCATAATATGAAGGCTT+GGG | - | chr4_2:6625097-6625116 | Msa0585610:intron | 30.0% | |
| ACTAAGTTTATCCGATGTAT+TGG | - | chr4_2:6625133-6625152 | Msa0585610:intron | 30.0% | |
| !! | TACTTTTGGTTATGTTGCTA+AGG | - | chr4_2:6625172-6625191 | Msa0585610:intron | 30.0% |
| !! | ACTTTTGGTTATGTTGCTAA+GGG | - | chr4_2:6625173-6625192 | Msa0585610:intron | 30.0% |
| TTACAATCCGATTCAAAGTA+AGG | - | chr4_2:6625223-6625242 | Msa0585610:CDS | 30.0% | |
| CAAATCTCCTTACTTTGAAT+CGG | + | chr4_2:6625233-6625252 | None:intergenic | 30.0% | |
| TTGTGAACGTGAATTTACAT+TGG | - | chr4_2:6625250-6625269 | Msa0585610:CDS | 30.0% | |
| TTTCCATCACAATAATGTGA+AGG | + | chr4_2:6625296-6625315 | None:intergenic | 30.0% | |
| ATCTCTTCCAGTAGTTATCA+TGG | - | chr4_2:6622079-6622098 | Msa0585610:CDS | 35.0% | |
| TTATTTGAGGAGTTCTCCAA+AGG | - | chr4_2:6622134-6622153 | Msa0585610:CDS | 35.0% | |
| ! | TCCAAAGGTATGACAATGAA+GGG | - | chr4_2:6622149-6622168 | Msa0585610:CDS | 35.0% |
| CAACAAATGACTTTGGATCA+AGG | - | chr4_2:6622213-6622232 | Msa0585610:CDS | 35.0% | |
| ! | CAATGGTGATGTCTAGTTAA+TGG | - | chr4_2:6622631-6622650 | Msa0585610:CDS | 35.0% |
| ! | GTTAATGGTGATGTCTAGTT+AGG | - | chr4_2:6622646-6622665 | Msa0585610:CDS | 35.0% |
| ! | CGGATGAGTAAGTCTTATAT+AGG | + | chr4_2:6622837-6622856 | None:intergenic | 35.0% |
| ACACCTTAAGTTTGGAGAAA+TGG | - | chr4_2:6622996-6623015 | Msa0585610:CDS | 35.0% | |
| TCTCCATTTCTCCAAACTTA+AGG | + | chr4_2:6623002-6623021 | None:intergenic | 35.0% | |
| TTTGGAGAAATGGAGAATTG+CGG | - | chr4_2:6623006-6623025 | Msa0585610:CDS | 35.0% | |
| GAAGGGATATTAGAGATCTT+GGG | + | chr4_2:6623046-6623065 | None:intergenic | 35.0% | |
| TGAAGGGATATTAGAGATCT+TGG | + | chr4_2:6623047-6623066 | None:intergenic | 35.0% | |
| CTTGCAGAAAAGAATGTGAA+GGG | + | chr4_2:6623063-6623082 | None:intergenic | 35.0% | |
| TCTTGCAGAAAAGAATGTGA+AGG | + | chr4_2:6623064-6623083 | None:intergenic | 35.0% | |
| TGTCAATTAAATTGAGACGG+AGG | + | chr4_2:6623126-6623145 | None:intergenic | 35.0% | |
| AGAAAATGGGTCAGTTATTC+CGG | - | chr4_2:6623315-6623334 | Msa0585610:CDS | 35.0% | |
| TGTGTAGTATTATCGCTACT+AGG | - | chr4_2:6623781-6623800 | Msa0585610:intron | 35.0% | |
| GACAAAGAGAAATTGCTTGA+TGG | - | chr4_2:6623991-6624010 | Msa0585610:intron | 35.0% | |
| !!! | CTTGATGGACTTTTAGTTTC+AGG | - | chr4_2:6624006-6624025 | Msa0585610:intron | 35.0% |
| AAATATGGAGAAGGTTTGTG+TGG | + | chr4_2:6624090-6624109 | None:intergenic | 35.0% | |
| CAATTTGGGAAAGACAAAGA+AGG | - | chr4_2:6624345-6624364 | Msa0585610:intron | 35.0% | |
| ! | TACCAAACGATTCTCCTTTT+TGG | - | chr4_2:6624406-6624425 | Msa0585610:intron | 35.0% |
| ! | ACCAAACGATTCTCCTTTTT+GGG | - | chr4_2:6624407-6624426 | Msa0585610:intron | 35.0% |
| TACTGAGAAGAAATTGACTG+TGG | + | chr4_2:6624569-6624588 | None:intergenic | 35.0% | |
| ! | TACCTCAGTTTTTCACCATT+TGG | - | chr4_2:6624689-6624708 | Msa0585610:intron | 35.0% |
| TACCAAATGGTGAAAAACTG+AGG | + | chr4_2:6624694-6624713 | None:intergenic | 35.0% | |
| CTTCATTTGAAGGGTGAAAA+AGG | + | chr4_2:6624722-6624741 | None:intergenic | 35.0% | |
| ! | TGATTCATAACAACTTGGTG+TGG | + | chr4_2:6624840-6624859 | None:intergenic | 35.0% |
| ATTGAGGTTTATCAACCAAG+TGG | - | chr4_2:6625047-6625066 | Msa0585610:intron | 35.0% | |
| GTTTAGGAAATTCAAGACCA+TGG | - | chr4_2:6625195-6625214 | Msa0585610:CDS | 35.0% | |
| ATCGGATTGTAAAGAATCCA+TGG | + | chr4_2:6625215-6625234 | None:intergenic | 35.0% | |
| ! | GAAGGAGCATAATGATAACA+AGG | + | chr4_2:6625278-6625297 | None:intergenic | 35.0% |
| GAAGAAGCAACATCTTCAAA+AGG | + | chr4_2:6625320-6625339 | None:intergenic | 35.0% | |
| GCATTGTAAGGATTATCCTT+GGG | - | chr4_2:6625355-6625374 | Msa0585610:CDS | 35.0% | |
| CATTGTAAGGATTATCCTTG+GGG | - | chr4_2:6625356-6625375 | Msa0585610:CDS | 35.0% | |
| ATTGTAAGGATTATCCTTGG+GGG | - | chr4_2:6625357-6625376 | Msa0585610:CDS | 35.0% | |
| ! | CTCCAAAGGTATGACAATGA+AGG | - | chr4_2:6622148-6622167 | Msa0585610:CDS | 40.0% |
| TCCCTTCATTGTCATACCTT+TGG | + | chr4_2:6622153-6622172 | None:intergenic | 40.0% | |
| AGGTATGACAATGAAGGGAA+TGG | - | chr4_2:6622154-6622173 | Msa0585610:CDS | 40.0% | |
| GGCTCAAATGAACGTTATAG+CGG | - | chr4_2:6622175-6622194 | Msa0585610:CDS | 40.0% | |
| GCTCAAATGAACGTTATAGC+GGG | - | chr4_2:6622176-6622195 | Msa0585610:CDS | 40.0% | |
| ! | AAATGAACGTTATAGCGGGA+GGG | - | chr4_2:6622180-6622199 | Msa0585610:CDS | 40.0% |
| TCAAGGCAGAATGTAACACA+TGG | - | chr4_2:6622230-6622249 | Msa0585610:CDS | 40.0% | |
| ATTACAGTTTCTGTCCCACT+TGG | - | chr4_2:6622896-6622915 | Msa0585610:CDS | 40.0% | |
| AGAGTCTCACACCTTAAGTT+TGG | - | chr4_2:6622988-6623007 | Msa0585610:CDS | 40.0% | |
| TTGGAGAAATGGAGAATTGC+GGG | - | chr4_2:6623007-6623026 | Msa0585610:CDS | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | - | chr4_2:6623316-6623335 | Msa0585610:CDS | 40.0% | |
| ATGAATCATCGTGCATAAGC+AGG | - | chr4_2:6624034-6624053 | Msa0585610:intron | 40.0% | |
| ! | TCGTTGAAAGCTCTAGTGTT+TGG | + | chr4_2:6624159-6624178 | None:intergenic | 40.0% |
| ATTTCTTTACGCGCTGCTAA+CGG | - | chr4_2:6624305-6624324 | Msa0585610:intron | 40.0% | |
| CAAATTGTACGAGCATAACG+CGG | + | chr4_2:6624332-6624351 | None:intergenic | 40.0% | |
| GCGTTATGCTCGTACAATTT+GGG | - | chr4_2:6624331-6624350 | Msa0585610:intron | 40.0% | |
| TCCCAAAAAGGAGAATCGTT+TGG | + | chr4_2:6624411-6624430 | None:intergenic | 40.0% | |
| ACATCGTTTGCATCCCAAAA+AGG | + | chr4_2:6624423-6624442 | None:intergenic | 40.0% | |
| TTTGCCATCAGCAATGTATG+TGG | - | chr4_2:6624497-6624516 | Msa0585610:intron | 40.0% | |
| AGATCCACATACATTGCTGA+TGG | + | chr4_2:6624504-6624523 | None:intergenic | 40.0% | |
| CCTGCTTCCAAAAACAACAT+AGG | + | chr4_2:6624597-6624616 | None:intergenic | 40.0% | |
| !!! | CCTATGTTGTTTTTGGAAGC+AGG | - | chr4_2:6624594-6624613 | Msa0585610:intron | 40.0% |
| GAAAAAGGTAGCGTACCAAA+TGG | + | chr4_2:6624707-6624726 | None:intergenic | 40.0% | |
| TTCACCCTTCAAATGAAGCA+TGG | - | chr4_2:6624724-6624743 | Msa0585610:intron | 40.0% | |
| TCACCCTTCAAATGAAGCAT+GGG | - | chr4_2:6624725-6624744 | Msa0585610:intron | 40.0% | |
| ACTTGGCTAAAGCAAATGAG+AGG | - | chr4_2:6624775-6624794 | Msa0585610:intron | 40.0% | |
| GCTAAAGCAAATGAGAGGAT+AGG | - | chr4_2:6624780-6624799 | Msa0585610:intron | 40.0% | |
| CAAAAACAAAACGGTTGCGA+AGG | - | chr4_2:6624938-6624957 | Msa0585610:intron | 40.0% | |
| ACGAATAAATCCACGGTTAC+TGG | - | chr4_2:6625017-6625036 | Msa0585610:intron | 40.0% | |
| CGAATAAATCCACGGTTACT+GGG | - | chr4_2:6625018-6625037 | Msa0585610:intron | 40.0% | |
| GAATAAATCCACGGTTACTG+GGG | - | chr4_2:6625019-6625038 | Msa0585610:intron | 40.0% | |
| ! | TTTTGTTGCTCTTCACCACT+TGG | + | chr4_2:6625065-6625084 | None:intergenic | 40.0% |
| GGTTATGTTGCTAAGGGTTT+AGG | - | chr4_2:6625179-6625198 | Msa0585610:intron | 40.0% | |
| GCTCCTTCACATTATTGTGA+TGG | - | chr4_2:6625290-6625309 | Msa0585610:CDS | 40.0% | |
| GGCATTGTAAGGATTATCCT+TGG | - | chr4_2:6625354-6625373 | Msa0585610:CDS | 40.0% | |
| ! | CAAATGAACGTTATAGCGGG+AGG | - | chr4_2:6622179-6622198 | Msa0585610:CDS | 45.0% |
| TCCGGTTAAACCTGACAAAG+TGG | - | chr4_2:6622853-6622872 | Msa0585610:CDS | 45.0% | |
| ! | GCCACTTTGTCAGGTTTAAC+CGG | + | chr4_2:6622857-6622876 | None:intergenic | 45.0% |
| TGCAAGGACATTTGATGCGT+TGG | - | chr4_2:6623712-6623731 | Msa0585610:intron | 45.0% | |
| GTTTGTGTGGAGATGGTTTG+TGG | + | chr4_2:6624077-6624096 | None:intergenic | 45.0% | |
| ! | TGGTTACCAGCAAATGGGTT+AGG | - | chr4_2:6624255-6624274 | Msa0585610:intron | 45.0% |
| TGGTTACCTAACCCATTTGC+TGG | + | chr4_2:6624264-6624283 | None:intergenic | 45.0% | |
| CGCGTTATGCTCGTACAATT+TGG | - | chr4_2:6624330-6624349 | Msa0585610:intron | 45.0% | |
| GCTCCCATGCTTCATTTGAA+GGG | + | chr4_2:6624731-6624750 | None:intergenic | 45.0% | |
| TGCTCCCATGCTTCATTTGA+AGG | + | chr4_2:6624732-6624751 | None:intergenic | 45.0% | |
| AATTACTTCCCCAGTAACCG+TGG | + | chr4_2:6625030-6625049 | None:intergenic | 45.0% | |
| GGTTACTGGGGAAGTAATTG+AGG | - | chr4_2:6625031-6625050 | Msa0585610:intron | 45.0% | |
| ! | TTAACTAGCTTCAACCCCCA+AGG | + | chr4_2:6625374-6625393 | None:intergenic | 45.0% |
| !!! | TTTTATTTTATAAATGAAAT+AGG | + | chr4_2:6623522-6623541 | None:intergenic | 5.0% |
| ! | AGGAGACTAGCCACTTTGTC+AGG | + | chr4_2:6622866-6622885 | None:intergenic | 50.0% |
| ATGGGTCAGTTATTCCGGGA+CGG | - | chr4_2:6623320-6623339 | Msa0585610:CDS | 50.0% | |
| !!! | GACGGAGGGAGTACTACTTT+TGG | - | chr4_2:6623338-6623357 | Msa0585610:CDS | 50.0% |
| GGAGAAGGTTTGTGTGGAGA+TGG | + | chr4_2:6624084-6624103 | None:intergenic | 50.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | - | chr4_2:6623324-6623343 | Msa0585610:CDS | 55.0% | |
| AAGTAGTACTCCCTCCGTCC+CGG | + | chr4_2:6623337-6623356 | None:intergenic | 55.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | - | chr4_2:6623323-6623342 | Msa0585610:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 6622068 | 6625406 | 6622068 | ID=Msa0585610;Name=Msa0585610 |
| chr4_2 | mRNA | 6622068 | 6625406 | 6622068 | ID=Msa0585610-mRNA-1;Parent=Msa0585610;Name=Msa0585610-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|567 |
| chr4_2 | exon | 6625181 | 6625406 | 6625181 | ID=Msa0585610-mRNA-1:exon:1618;Parent=Msa0585610-mRNA-1 |
| chr4_2 | exon | 6622068 | 6623545 | 6622068 | ID=Msa0585610-mRNA-1:exon:1617;Parent=Msa0585610-mRNA-1 |
| chr4_2 | CDS | 6625181 | 6625406 | 6625181 | ID=Msa0585610-mRNA-1:cds;Parent=Msa0585610-mRNA-1 |
| chr4_2 | CDS | 6622068 | 6623545 | 6622068 | ID=Msa0585610-mRNA-1:cds;Parent=Msa0585610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
