AlfalfaGEDB | Msa1359040

M. sativa cultivar zhongmu-4 / Msa1359040

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1359040	XP_003618211.2	89.231	260	20	2	1	260	1	252	3.04e-135	413

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1359040	G7KHL7	89.231	260	20	2	1	260	1	252	1.45e-135	413

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000550	Msa1359040	-0.807056	6.090783e-50	-8.615850e-47
Msa0001790	Msa1359040	0.847225	1.323100e-59	-8.615850e-47
Msa0002230	Msa1359040	0.833593	4.877497e-56	-8.615850e-47
Msa0002240	Msa1359040	0.822587	2.186823e-53	-8.615850e-47
Msa0003700	Msa1359040	0.810588	1.069932e-50	-8.615850e-47
Msa0003890	Msa1359040	0.872033	4.338534e-67	-8.615850e-47
Msa0004880	Msa1359040	0.822981	1.770738e-53	-8.615850e-47
Msa0004920	Msa1359040	0.813671	2.274567e-51	-8.615850e-47
Msa0006000	Msa1359040	0.801433	9.023678e-49	-8.615850e-47
Msa0006070	Msa1359040	0.848205	7.107436e-60	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1359040	MtrunA17_Chr6g0450151	89.231	260	20	2	1	260	1	252	2.80e-139	413
Msa1359040	MtrunA17_Chr6g0450071	62.692	260	29	6	1	260	1	192	1.01e-77	248

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 56 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGTGAAAATTGTGAT+GGG	0.593063	tig0016634:-4158	Msa1359040:CDS
AAACTTGTTTCAACCCCAAA+TGG	0.459582	tig0016634:+4747	Msa1359040:intergenic
AACGGGAAGGAGAATGAGGA+GGG	0.451447	tig0016634:-4300	Msa1359040:CDS
AATATTGATATTGAAGTGAA+CGG	0.550307	tig0016634:-4318	Msa1359040:CDS
AATGACTGAGAAGGAGGGTG+CGG	0.597087	tig0016634:-4079	Msa1359040:CDS
AATGAGAAGGATAGTGAGGA+GGG	0.420006	tig0016634:-4183	Msa1359040:CDS
AATGATTCAGGTGTGAATAA+TGG	0.346767	tig0016634:-4603	Msa1359040:CDS
ACGGGAAGGAGAATGAGGAG+GGG	0.710995	tig0016634:-4299	Msa1359040:CDS
ACTGAATCGATGGAACCATT+TGG	0.431119	tig0016634:-4762	Msa1359040:CDS
ACTGAGAAGGAGGGTGCGGA+AGG	0.591514	tig0016634:-4075	Msa1359040:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGATTCAGGTGTGAATAA+TGG	-	tig0016634:4191-4210	Msa1359040:CDS	30.0%
ATGATTCAGGTGTGAATAAT+GGG	-	tig0016634:4192-4211	Msa1359040:CDS	30.0%
TGATGAAAAAATTCAGACTG+TGG	-	tig0016634:4427-4446	Msa1359040:CDS	30.0%
AAAAGGGTGAAAATTGTGAT+GGG	-	tig0016634:4636-4655	Msa1359040:CDS	30.0%
AATGATTCAGGTGTGAATAA+TGG	-	tig0016634:4191-4210	Msa1359040:CDS	30.0%
ATGATTCAGGTGTGAATAAT+GGG	-	tig0016634:4192-4211	Msa1359040:CDS	30.0%
TGATGAAAAAATTCAGACTG+TGG	-	tig0016634:4427-4446	Msa1359040:CDS	30.0%
AAAAGGGTGAAAATTGTGAT+GGG	-	tig0016634:4636-4655	Msa1359040:CDS	30.0%
TTTGAAGGAGAATGATTCTC+AGG	-	tig0016634:4163-4182	Msa1359040:CDS	35.0%
TGATTCAGGTGTGAATAATG+GGG	-	tig0016634:4193-4212	Msa1359040:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0016634	gene	4017	4799	4017	ID=Msa1359040;Name=Msa1359040
tig0016634	mRNA	4017	4799	4017	ID=Msa1359040-mRNA-1;Parent=Msa1359040;Name=Msa1359040-mRNA-1;_AED=0.19;_eAED=0.37;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|260
tig0016634	exon	4017	4799	4017	ID=Msa1359040-mRNA-1:exon:11160;Parent=Msa1359040-mRNA-1
tig0016634	CDS	4017	4799	4017	ID=Msa1359040-mRNA-1:cds;Parent=Msa1359040-mRNA-1

Gene Sequence

>Msa1359040

ATGCGTGTGGTTGATACTGAATCGATGGAACCATTTGGGGTTGAAACAAGTTTAGCTGAAAATTTTATGGTTGAAGGTTCAGAGCAGGAGAAGAATGAGCTTAAGGAAGTTGTTAAGAGTAGTGTTTTCGAGACCGAGGTTTCAGTTTTGAAGGAGAATGATTCTCAGGTTGTGAATGATTCAGGTGTGAATAATGGGGTGTCTTCTGAGATGAATAACGACGGTGCTGTTGAAGTTGTTAAGAGTAGCGATTTCGAGACCGAGGTTTCGATTTTGAAGGAGAACGTTTCTCAGGTTGTGGCTGATTCTGAGGTGAATACTGGGGTGTCTTCTTTGTTGAAAACGAGAGAAAACGATGGAAGTGTCGTCGTTTGTGAGAAGATCAATTGTGAGGAGAAAGTCAAAGAAGGTGATGAAAAAATTCAGACTGTGGAGATTCCAATCGTGGAGATAAGTGCGAATATTGATATTGAAGTGAACGGGAAGGAGAATGAGGAGGGGAAAAAAGATGAAAAATTTGCGACTGTTGAGGTTCCATTTGCGACTGTTGAGGTTCCAATAGTGGAAACAAGTGAGAACATTGATGTTGAGATGAATGAGAAGGATAGTGAGGAGGGAGAAAAGGGTGAAAATTGTGATGGGAAGATCGAGTCTATTGAGGTACCGATAGTGGAGGCAAGTGAAAGTGTTGATGTTGAAATGACTGAGAAGGAGGGTGCGGAAGGAAAAAAAGATGAAAATTGTGATGGGAAGATTGAGATTTTTGAGGGTCCAATAGTGTAG

Protein sequence

>Msa1359040

MRVVDTESMEPFGVETSLAENFMVEGSEQEKNELKEVVKSSVFETEVSVLKENDSQVVNDSGVNNGVSSEMNNDGAVEVVKSSDFETEVSILKENVSQVVADSEVNTGVSSLLKTRENDGSVVVCEKINCEEKVKEGDEKIQTVEIPIVEISANIDIEVNGKENEEGKKDEKFATVEVPFATVEVPIVETSENIDVEMNEKDSEEGEKGENCDGKIESIEVPIVEASESVDVEMTEKEGAEGKKDENCDGKIEIFEGPIV*