AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0603380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0603380 MtrunA17_Chr1g0182341 92.157 408 8 1 1 408 1 384 0.0 779
Msa0603380 MtrunA17_Chr1g0172731 43.990 391 197 5 24 406 30 406 4.26e-111 332
Msa0603380 MtrunA17_Chr1g0190171 43.734 391 198 5 24 406 30 406 1.65e-110 330
Msa0603380 MtrunA17_Chr7g0267201 81.176 170 31 1 67 236 1 169 8.05e-101 297
Msa0603380 MtrunA17_Chr6g0477141 42.899 345 179 6 34 372 114 446 7.51e-91 282
Msa0603380 MtrunA17_Chr6g0478531 37.602 367 207 5 49 405 27 381 5.03e-82 256
Msa0603380 MtrunA17_Chr7g0226311 39.093 353 187 8 57 401 6 338 1.04e-76 241
Msa0603380 MtrunA17_Chr2g0321401 48.101 237 112 3 24 257 29 257 6.02e-75 234
Msa0603380 MtrunA17_Chr8g0334561 45.992 237 117 3 24 257 30 258 3.66e-73 229
Msa0603380 MtrunA17_Chr8g0391981 35.933 359 205 5 17 374 34 368 1.65e-63 209
Msa0603380 MtrunA17_Chr2g0285471 48.980 196 89 3 65 257 2 189 4.97e-61 196
Msa0603380 MtrunA17_Chr1g0207391 35.275 309 186 5 45 351 73 369 3.66e-60 201
Msa0603380 MtrunA17_Chr1g0154421 35.032 157 94 2 14 170 1 149 1.46e-21 90.5
Msa0603380 MtrunA17_Chr4g0018411 33.544 158 84 4 254 405 9 151 5.08e-20 86.3
Msa0603380 MtrunA17_Chr3g0140031 42.683 82 46 1 26 107 32 112 2.63e-16 74.7
Msa0603380 MtrunA17_Chr2g0327851 25.168 298 190 9 70 352 12 291 7.89e-15 75.1
Msa0603380 MtrunA17_Chr2g0327831 23.214 336 220 9 48 362 35 353 1.82e-14 74.3
Msa0603380 MtrunA17_Chr1g0212591 22.945 292 185 6 76 353 90 355 4.63e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0603380 AT5G41980.1 32.982 379 217 7 36 406 17 366 1.25e-64 211
Msa0603380 AT1G43722.1 37.261 314 173 8 16 315 16 319 1.07e-57 192
Msa0603380 AT5G28730.1 39.091 220 101 4 56 274 19 206 1.89e-42 151
Msa0603380 AT3G30525.1 41.071 168 92 3 181 342 1 167 2.61e-35 128
Msa0603380 AT5G35695.1 36.296 135 72 2 219 351 25 147 7.64e-24 99.0
Msa0603380 AT5G28950.1 41.758 91 53 0 160 250 8 98 2.08e-20 87.4
Msa0603380 AT4G10890.3 44.565 92 49 2 230 320 71 161 3.59e-17 84.0
Msa0603380 AT4G10890.1 44.565 92 49 2 230 320 71 161 3.59e-17 84.0
Msa0603380 AT4G10890.2 44.565 92 49 2 230 320 71 161 3.59e-17 84.0
Msa0603380 AT4G29780.1 23.510 302 190 7 65 350 217 493 2.10e-11 65.9
Msa0603380 AT3G63270.1 23.129 294 200 7 65 344 69 350 3.02e-11 65.1

Find 326 sgRNAs with CRISPR-Local

Find 516 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAAAGTATGCACTTTAT+TGG 0.147840 4_2:-47871421 Msa0603380:CDS
GAAAGCAATGTAGAGCATTT+TGG 0.171716 4_2:+47875490 None:intergenic
CAAGTAATGTATGGGGTTTC+CGG 0.180720 4_2:-47874745 Msa0603380:five_prime_UTR
ACAATATTGCTGCTTTATTA+TGG 0.184612 4_2:-47870096 Msa0603380:CDS
TTAAACAGGTAGATATTATT+TGG 0.193414 4_2:-47870536 Msa0603380:intron
CTGCTTTATTATGGAATAAT+AGG 0.193429 4_2:-47870087 Msa0603380:CDS
AGCTAGTTAAATCAACATTT+TGG 0.197799 4_2:-47869987 Msa0603380:three_prime_UTR
CAGCTATAATAACATCAATT+TGG 0.198792 4_2:+47870299 None:intergenic
TTGCTATGGGTGCTTCTAAT+AGG 0.216724 4_2:-47871136 Msa0603380:CDS
GTAAAGTTCATTAGAATAAA+TGG 0.218391 4_2:-47873196 Msa0603380:five_prime_UTR
AGAGAGCGCTTTCAACATTC+TGG 0.223219 4_2:-47871107 Msa0603380:CDS
TCATCATTAGGTATGTAATT+TGG 0.226168 4_2:+47870205 None:intergenic
AGTTGGTGCTCATGTTATTA+TGG 0.238124 4_2:-47871465 Msa0603380:exon
CTAGGCTTTGTTGCTTGTTT+TGG 0.239909 4_2:-47869401 Msa0603380:three_prime_UTR
AATATTTAGGTCTCTTAATA+AGG 0.248285 4_2:-47874501 Msa0603380:five_prime_UTR
TCACTTGGTTGAGCAAAATT+AGG 0.253485 4_2:+47874900 None:intergenic
CAGGAATACATGCAGCTATA+TGG 0.259794 4_2:+47870812 None:intergenic
GATACAAGTGGTAAATATTT+AGG 0.268723 4_2:-47874514 Msa0603380:five_prime_UTR
CCTATCTGGTGTGTTTAGTT+TGG 0.272419 4_2:-47869330 Msa0603380:three_prime_UTR
GACAAAGAGTGGTGTCATTC+TGG 0.278401 4_2:-47874963 Msa0603380:five_prime_UTR
TTTGCTTGATTCGTTGATTC+CGG 0.279644 4_2:-47869499 Msa0603380:three_prime_UTR
GCTGAATGCAGTAGCATCTA+TGG 0.281504 4_2:+47869047 None:intergenic
TGGAAGAGTGGGAGTACTTA+TGG 0.288277 4_2:+47875629 None:intergenic
CGAGTTGGTGGATGAGTTAC+AGG 0.296232 4_2:-47869598 Msa0603380:three_prime_UTR
TCCACAGGTTGAACCAATTC+AGG 0.302798 4_2:+47872739 None:intergenic
AATTGAAAAGTTGGATCCTT+TGG 0.304490 4_2:+47870993 None:intergenic
AGATATTATTTGGTTGATAA+AGG 0.305824 4_2:-47870526 Msa0603380:CDS
CTTTGGAAGTTTCTGAAGTA+TGG 0.306549 4_2:-47873055 Msa0603380:five_prime_UTR
CTATCTGGTGTGTTTAGTTT+GGG 0.311634 4_2:-47869329 Msa0603380:three_prime_UTR
GGCCTCAAGTAATGATAAAA+TGG 0.311908 4_2:-47873281 Msa0603380:five_prime_UTR
GATGCTCATGCTACTTTCTA+TGG 0.312345 4_2:-47875398 Msa0603380:five_prime_UTR
AGATGAATGTGCCCGGTTAA+AGG 0.318956 4_2:+47870408 None:intergenic
TTGTGTGGCACACGGCGTTT+TGG 0.319948 4_2:-47869675 Msa0603380:three_prime_UTR
GTTGGTCCTTGTCCTGCTAT+AGG 0.322439 4_2:-47869172 Msa0603380:three_prime_UTR
ACCATATATCCCTCTTTATC+AGG 0.331108 4_2:+47870499 None:intergenic
TTGGTTATCTGTTGTGGTAC+TGG 0.332869 4_2:-47869840 Msa0603380:three_prime_UTR
GCTGTTAGCGTGGGGCTGTT+TGG 0.336709 4_2:-47869353 Msa0603380:three_prime_UTR
TTTGCTCAACCAAGTGATAA+TGG 0.336925 4_2:-47874894 Msa0603380:five_prime_UTR
TTAAGGTTAAATTATATTCC+TGG 0.336958 4_2:+47874315 None:intergenic
TATGGTGGATCTGATGCTTC+TGG 0.339901 4_2:-47875380 Msa0603380:five_prime_UTR
TATACTACTAAAATAAATTA+AGG 0.340049 4_2:+47874298 None:intergenic
TAACTAATGTTTAATATTTG+AGG 0.341000 4_2:+47869110 None:intergenic
GTGTGTTTAGTTTGGGCTGC+TGG 0.341431 4_2:-47869322 Msa0603380:three_prime_UTR
GACGTGGATCATCATTTAAA+TGG 0.341822 4_2:-47873174 Msa0603380:five_prime_UTR
AGAGTTTGTTGCACCCTCTA+TGG 0.342483 4_2:-47872764 Msa0603380:five_prime_UTR
CAGCACCACCTCACACAAAC+AGG 0.343421 4_2:+47869375 None:intergenic
TCAACTGTCATTCTCTTACT+TGG 0.344249 4_2:+47871188 None:intergenic
GGTGATTTGCAATCAAAATA+TGG 0.344321 4_2:-47871218 Msa0603380:CDS
TTTCTGAAGTATGGTGAAAC+TGG 0.344481 4_2:-47873046 Msa0603380:five_prime_UTR
GTGGGGCTGTTTGGCCTATC+TGG 0.345937 4_2:-47869344 Msa0603380:three_prime_UTR
TGGTTTACAACTTGCATTGT+AGG 0.350657 4_2:+47875665 None:intergenic
TCCTGATAAAGAGGGATATA+TGG 0.351237 4_2:-47870500 Msa0603380:CDS
CATTATTATATGCAGGGCTT+GGG 0.355183 4_2:+47874713 None:intergenic
CAACTAAGCTTTCCTGTAAC+AGG 0.356024 4_2:+47873010 None:intergenic
AAGTAATGTATGGGGTTTCC+GGG 0.360242 4_2:-47874744 Msa0603380:five_prime_UTR
GAAAGACAAGAGGGAAGATC+AGG 0.361958 4_2:-47870148 Msa0603380:CDS
CTATAAGCTCAAACGCTACT+TGG 0.369170 4_2:+47874006 None:intergenic
ATTGTTGAAGCTAGAATTCC+TGG 0.372131 4_2:-47875446 Msa0603380:five_prime_UTR
ACCCTCTATGGATCCTGAAT+TGG 0.374643 4_2:-47872752 Msa0603380:five_prime_UTR
ATGCTCAAGAAGCCTTTAAC+CGG 0.377607 4_2:-47870420 Msa0603380:CDS
TTTGATGACAATTATGCAAC+TGG 0.378059 4_2:-47872790 Msa0603380:five_prime_UTR
CACAACTGTTTAAATAAAGT+TGG 0.379578 4_2:+47871242 None:intergenic
TGAAGAAAGATTGGCGACTT+TGG 0.383779 4_2:-47873072 Msa0603380:five_prime_UTR
TTAGGATGGGATCCTGTTAC+AGG 0.384207 4_2:-47873022 Msa0603380:five_prime_UTR
GTGGTAGAAGTAGGGGCTAC+AGG 0.390412 4_2:-47871040 Msa0603380:CDS
ACTAACCTGCGGTAAGCAAC+AGG 0.390868 4_2:+47874786 None:intergenic
CTTCGTATGGTCTGTTCTGC+AGG 0.391162 4_2:-47869903 Msa0603380:three_prime_UTR
TGCTATGGGTGCTTCTAATA+GGG 0.391538 4_2:-47871135 Msa0603380:CDS
TTGCTTGATTCGTTGATTCC+GGG 0.392358 4_2:-47869498 Msa0603380:three_prime_UTR
GGTTTACAACTTGCATTGTA+GGG 0.393654 4_2:+47875666 None:intergenic
TGATGGCCTCTTCAAAATCT+TGG 0.394926 4_2:+47873140 None:intergenic
CTCATTCTGCAGATTAAAGT+TGG 0.397123 4_2:-47871482 Msa0603380:five_prime_UTR
GGTACTGGTATCTCAGTCTT+AGG 0.397432 4_2:-47869455 Msa0603380:three_prime_UTR
GTGTGTTTGCGGTTTGGTCT+AGG 0.399026 4_2:-47869419 Msa0603380:three_prime_UTR
AGCTATAATAACATCAATTT+GGG 0.405985 4_2:+47870300 None:intergenic
AGGCTTCTTGAGCATTAGTT+GGG 0.406495 4_2:+47870428 None:intergenic
ATCCTTCGATTGAGGAATAC+TGG 0.409014 4_2:-47872822 Msa0603380:five_prime_UTR
GCATTATTATATGCAGGGCT+TGG 0.409490 4_2:+47874712 None:intergenic
ATTCGGAGGTGAGAGTTGAT+TGG 0.411865 4_2:+47875594 None:intergenic
CATACCTAATGATGAACTTC+CGG 0.414539 4_2:-47870197 Msa0603380:CDS
AGTTGTATAGAAAGATCATT+TGG 0.415602 4_2:-47870379 Msa0603380:CDS
AAGGCTTCTTGAGCATTAGT+TGG 0.417338 4_2:+47870427 None:intergenic
AGAGTTTAATAGTTTGAATC+CGG 0.417864 4_2:-47869628 Msa0603380:three_prime_UTR
TGTTTCACATTTATATCAGT+TGG 0.418325 4_2:-47870712 Msa0603380:CDS
GTTACGCATTTCCTTTGTCT+TGG 0.419924 4_2:+47870117 None:intergenic
GATTGTATTGGATGTATTGA+TGG 0.421287 4_2:-47870838 Msa0603380:CDS
AGCAATTAGTGGTAGAAGTA+GGG 0.424578 4_2:-47871048 Msa0603380:CDS
ACAGGTTATGTCGTGGCGTT+GGG 0.424774 4_2:-47869580 Msa0603380:three_prime_UTR
TTCCAAGAGCTTAATTCAGT+TGG 0.425983 4_2:+47874682 None:intergenic
TACAGGTTATGTCGTGGCGT+TGG 0.426738 4_2:-47869581 Msa0603380:three_prime_UTR
ATGTATGACTTCACTTCAAA+GGG 0.430678 4_2:-47871333 Msa0603380:CDS
AAGGCATTCATACATCGAAC+AGG 0.430858 4_2:+47871275 None:intergenic
ATAATACCATCTGGTGGCTT+CGG 0.431622 4_2:+47870622 None:intergenic
CATCACAGTTAGGCACTGTT+TGG 0.432343 4_2:-47874169 Msa0603380:five_prime_UTR
TTCCAACTGAATTAAGCTCT+TGG 0.433570 4_2:-47874684 Msa0603380:five_prime_UTR
ATGTATGAATGCCTTTAGAA+TGG 0.435269 4_2:-47871267 Msa0603380:CDS
CTTATGGAGTTGGGAAGTGC+TGG 0.436835 4_2:+47875645 None:intergenic
CTCTATTATTGAGCTTCGTA+TGG 0.437152 4_2:-47869916 Msa0603380:three_prime_UTR
CAAAACAACCAAAACAGCAC+AGG 0.441141 4_2:+47869871 None:intergenic
AGGAATACATGCAGCTATAT+GGG 0.442404 4_2:+47870813 None:intergenic
CGTAGCCTGCTGGTGTGGTT+TGG 0.445129 4_2:-47869250 Msa0603380:three_prime_UTR
ATATCCGGAAGTTCATCATT+AGG 0.445538 4_2:+47870193 None:intergenic
GCGGTTGTGTGTTTGCGGTT+TGG 0.446259 4_2:-47869425 Msa0603380:three_prime_UTR
TTGCTGCTGCCGTAGCCTGC+TGG 0.446426 4_2:-47869260 Msa0603380:three_prime_UTR
GTGGGAGTACTTATGGAGTT+GGG 0.448696 4_2:+47875636 None:intergenic
CACATTTATATCAGTTGGAT+GGG 0.449515 4_2:-47870707 Msa0603380:CDS
GAGAATGACAGTTGAAGAGA+AGG 0.450583 4_2:-47871180 Msa0603380:CDS
GAGGAATAAGAAAATTTGTA+AGG 0.453171 4_2:-47869707 Msa0603380:three_prime_UTR
CACCAACCACCATTATCACT+TGG 0.453463 4_2:+47874885 None:intergenic
CCCACCTCATTCATAAAATT+AGG 0.455879 4_2:+47872571 None:intergenic
GAGAGCGCTTTCAACATTCT+GGG 0.456542 4_2:-47871106 Msa0603380:CDS
TCCACCAACTCGGCCACCTC+CGG 0.456965 4_2:+47869609 None:intergenic
CCACTGGTAATTAATTACTA+AGG 0.457034 4_2:-47869136 Msa0603380:three_prime_UTR
TTTGCCCCTTGGGAGTGTGC+TGG 0.458762 4_2:-47869741 Msa0603380:three_prime_UTR
AATCATCATTATGAGATTGA+TGG 0.460371 4_2:-47872670 Msa0603380:five_prime_UTR
TTTAATGGTGTTGGATCCCA+AGG 0.461434 4_2:-47869522 Msa0603380:three_prime_UTR
AGTGGGAGTACTTATGGAGT+TGG 0.462111 4_2:+47875635 None:intergenic
TCACATTTATATCAGTTGGA+TGG 0.462172 4_2:-47870708 Msa0603380:CDS
AAGCAATTAGTGGTAGAAGT+AGG 0.463003 4_2:-47871049 Msa0603380:CDS
ATTTGTGTATACACTTGCTA+TGG 0.464770 4_2:-47871150 Msa0603380:CDS
GGTGGTGCTGCTGTTAGCGT+GGG 0.465370 4_2:-47869362 Msa0603380:three_prime_UTR
AGGGCTTGGGGTTCGAGCCC+CGG 0.467211 4_2:+47874726 None:intergenic
TTCGGAGGTGAGAGTTGATT+GGG 0.468875 4_2:+47875595 None:intergenic
ACAACTGTTTAAATAAAGTT+GGG 0.470278 4_2:+47871243 None:intergenic
GCGGTACATGCCTTATTTCA+AGG 0.470711 4_2:-47870943 Msa0603380:intron
GAACTTCCGGATATTGTTGA+TGG 0.471308 4_2:-47870184 Msa0603380:CDS
GATATTGTTGATGGTTATCA+AGG 0.472958 4_2:-47870175 Msa0603380:CDS
CATGTGCCTACCCAAGGTCT+TGG 0.473985 4_2:-47872541 Msa0603380:five_prime_UTR
TTTCTGCAGCAAGAAGGGTT+TGG 0.474065 4_2:-47869815 Msa0603380:three_prime_UTR
TAGATACTATGAAGAAAGAT+TGG 0.475774 4_2:-47873081 Msa0603380:five_prime_UTR
TATGTCGTGGCGTTGGGCGT+TGG 0.480162 4_2:-47869574 Msa0603380:three_prime_UTR
TGATAACCATCAACAATATC+CGG 0.481164 4_2:+47870178 None:intergenic
CTGAATGCAGTAGCATCTAT+GGG 0.483252 4_2:+47869048 None:intergenic
TTGATTGGGCAGTGAGAGTG+TGG 0.485587 4_2:+47875609 None:intergenic
AGAATTCCTGGTGTTTACTC+TGG 0.487043 4_2:-47875434 Msa0603380:five_prime_UTR
ATGCGTTATAGAGGTAGAAA+AGG 0.488536 4_2:-47870778 Msa0603380:CDS
AAGTATGGTGAAACTGGATT+AGG 0.490077 4_2:-47873040 Msa0603380:five_prime_UTR
TGGTGCCTTATCCTAGGATA+AGG 0.490247 4_2:-47870480 Msa0603380:CDS
GTGGAACATGTTAATGTTGA+GGG 0.493344 4_2:-47872721 Msa0603380:five_prime_UTR
TTGGAGTGCTGAAGAAAAGA+TGG 0.493759 4_2:-47870360 Msa0603380:CDS
CATGTATGACTTCACTTCAA+AGG 0.493877 4_2:-47871334 Msa0603380:CDS
GTAGCAGTAATGAAAATTGA+AGG 0.495390 4_2:+47874936 None:intergenic
CAAGACCTTGGGTAGGCACA+TGG 0.495437 4_2:+47872542 None:intergenic
GTTAAGACTTGTAAAGTTGG+TGG 0.501481 4_2:-47869091 Msa0603380:three_prime_UTR
TTAGTTAAGACTTGTAAAGT+TGG 0.501586 4_2:-47869094 Msa0603380:three_prime_UTR
GCGGATCAAATGCGTTATAG+AGG 0.501916 4_2:-47870787 Msa0603380:CDS
GCAGTGAGAGTGTGGAAGAG+TGG 0.503109 4_2:+47875617 None:intergenic
TCTGATGCTTCTGGCACCAT+GGG 0.503667 4_2:-47875371 Msa0603380:intron
TAAAGTTGGGTCCATTCTAA+AGG 0.503902 4_2:+47871256 None:intergenic
TCAAGTATGAAGTTCACCTT+CGG 0.503999 4_2:+47871510 None:intergenic
CTTTGAAGTGAAGTCATACA+TGG 0.505120 4_2:+47871335 None:intergenic
TCACCTCCGAATCAATCTCT+AGG 0.505713 4_2:-47875583 Msa0603380:five_prime_UTR
TGTATATGTTAAATAAAACT+AGG 0.506032 4_2:-47868969 Msa0603380:three_prime_UTR
GGCGGTATAAATTGAAAAGT+TGG 0.506589 4_2:+47870984 None:intergenic
AGGTTTAGTTGCATTTCCAC+TGG 0.507590 4_2:-47869152 Msa0603380:three_prime_UTR
TCCGGAGGTGGCCGAGTTGG+TGG 0.507633 4_2:-47869610 Msa0603380:three_prime_UTR
TAAAGGATATCCTGATAAAG+AGG 0.508049 4_2:-47870509 Msa0603380:CDS
GATATATGGTGCCTTATCCT+AGG 0.509383 4_2:-47870486 Msa0603380:CDS
GTGCCTACCCAAGGTCTTGG+AGG 0.510178 4_2:-47872538 Msa0603380:five_prime_UTR
TGGTAGAAGTAGGGGCTACA+GGG 0.514971 4_2:-47871039 Msa0603380:CDS
TAACGCATTTGATCCGCCTC+AGG 0.515164 4_2:+47870793 None:intergenic
CCAAACTAAACACACCAGAT+AGG 0.517008 4_2:+47869330 None:intergenic
TTAGGAGGAGCATGTGGGTA+CGG 0.517583 4_2:-47875092 Msa0603380:intron
TAATAGTTTGAATCCGGAGG+TGG 0.518975 4_2:-47869622 Msa0603380:three_prime_UTR
GTGTTTACTCTGGTGGTCAA+TGG 0.519210 4_2:-47875424 Msa0603380:five_prime_UTR
TCAACGAATCAAGCAAACCT+TGG 0.519510 4_2:+47869505 None:intergenic
AGTCCAGTCTCATCACAGTT+AGG 0.519855 4_2:-47874179 Msa0603380:five_prime_UTR
ATTCCTGGTGTTTACTCTGG+TGG 0.519949 4_2:-47875431 Msa0603380:five_prime_UTR
GTGATGTTGGTTATCTGTTG+TGG 0.521069 4_2:-47869846 Msa0603380:three_prime_UTR
CAGTGAGAGTGTGGAAGAGT+GGG 0.521122 4_2:+47875618 None:intergenic
CAACGAATCAAGCAAACCTT+GGG 0.521442 4_2:+47869506 None:intergenic
TTGTCCCTGTTGCTTACCGC+AGG 0.522475 4_2:-47874791 Msa0603380:five_prime_UTR
TCAGCAATCTTAAGAAACAT+AGG 0.524078 4_2:+47874828 None:intergenic
ATAGACGCATTATTATATGC+AGG 0.524216 4_2:+47874706 None:intergenic
TGATACCTTATCCTAGGATA+AGG 0.524433 4_2:+47870475 None:intergenic
GAATCCGGAGGTGGCCGAGT+TGG 0.524551 4_2:-47869613 Msa0603380:three_prime_UTR
AATTTGTACAGTCAAGGTTA+CGG 0.526954 4_2:-47875068 Msa0603380:five_prime_UTR
TTGTTATCAGTTTGTGCACA+AGG 0.528738 4_2:-47869295 Msa0603380:three_prime_UTR
ATCTGATGCTTCTGGCACCA+TGG 0.529188 4_2:-47875372 Msa0603380:five_prime_UTR
AAAACAACCAAAACAGCACA+GGG 0.531002 4_2:+47869872 None:intergenic
TGAAATAAGCTATAAGCTCA+TGG 0.532113 4_2:+47874060 None:intergenic
TAAATAAAACTAGGCATACA+AGG 0.534367 4_2:-47868960 Msa0603380:three_prime_UTR
AGGAATAAGAAAATTTGTAA+GGG 0.534993 4_2:-47869706 Msa0603380:three_prime_UTR
TTGTGTACCTCCAAGACCTT+GGG 0.536559 4_2:+47872531 None:intergenic
GTCGGTAGATCCTTCGATTG+AGG 0.536831 4_2:-47872830 Msa0603380:five_prime_UTR
GTTAAGAAATTAGTTGTGGT+AGG 0.537921 4_2:-47874202 Msa0603380:five_prime_UTR
ACAGTCCAAACCACACCAGC+AGG 0.538429 4_2:+47869245 None:intergenic
CTTGTGTACCTCCAAGACCT+TGG 0.541010 4_2:+47872530 None:intergenic
GACTGATGATACCTTATCCT+AGG 0.542227 4_2:+47870469 None:intergenic
AATGACAGTTGAAGAGAAGG+TGG 0.543559 4_2:-47871177 Msa0603380:CDS
ACCTACCCTAGAGATTGATT+CGG 0.545769 4_2:+47875577 None:intergenic
TTTATATCAGTTGGATGGGA+GGG 0.546071 4_2:-47870703 Msa0603380:CDS
GCTGCCGTAGCCTGCTGGTG+TGG 0.547359 4_2:-47869255 Msa0603380:three_prime_UTR
ACTGAAGGTGCACAAGTGAC+TGG 0.548205 4_2:-47872493 Msa0603380:five_prime_UTR
ACAACATGCCATGACATTGA+AGG 0.550242 4_2:+47870747 None:intergenic
ATTACTCCAGCACACTCCCA+AGG 0.550779 4_2:+47869735 None:intergenic
AGGTGGTGCTGCTGTTAGCG+TGG 0.551251 4_2:-47869363 Msa0603380:three_prime_UTR
GGTACCCATGTGCCTACCCA+AGG 0.553541 4_2:-47872547 Msa0603380:five_prime_UTR
ATTATTATATGCAGGGCTTG+GGG 0.555012 4_2:+47874714 None:intergenic
GAGAAATGAAAACCTGGGTG+TGG 0.556381 4_2:+47873722 None:intergenic
TACGGAAATTTGTACAGTCA+AGG 0.556701 4_2:-47875074 Msa0603380:five_prime_UTR
GGTGGCCTGTTTGTGTGAGG+TGG 0.558865 4_2:-47869380 Msa0603380:three_prime_UTR
TTCTAAGAGATGAATGTGCC+CGG 0.559680 4_2:+47870401 None:intergenic
AACATGTTAATGTTGAGGGG+GGG 0.561184 4_2:-47872717 Msa0603380:five_prime_UTR
AGCTTAGTTGTTCAGATGAG+TGG 0.562434 4_2:-47872997 Msa0603380:five_prime_UTR
CAGACGACATGCTTCTGAAG+TGG 0.563314 4_2:-47872626 Msa0603380:five_prime_UTR
TGGATCATCATTTAAATGGA+AGG 0.564174 4_2:-47873170 Msa0603380:five_prime_UTR
GCTGTGCGGTTGTGTGTTTG+CGG 0.564534 4_2:-47869430 Msa0603380:three_prime_UTR
CAAGGTAGTGAAAGACAAGA+GGG 0.565833 4_2:-47870157 Msa0603380:CDS
GTATGACAGAGTGGTGGGAG+AGG 0.566731 4_2:-47869788 Msa0603380:three_prime_UTR
CAAGTGACTGGTCAAGGTGG+AGG 0.567091 4_2:-47872481 Msa0603380:five_prime_UTR
GCTCCGTCTTGTGTGGCACA+CGG 0.569922 4_2:-47869683 Msa0603380:three_prime_UTR
GTGCCTAACTGTGATGAGAC+TGG 0.570049 4_2:+47874176 None:intergenic
AAGATTGCTGAGTATCGTGC+TGG 0.570660 4_2:-47874816 Msa0603380:five_prime_UTR
AAAGACAAGAGGGAAGATCA+GGG 0.574105 4_2:-47870147 Msa0603380:CDS
ATGGTGAAACTGGATTAGGA+TGG 0.575573 4_2:-47873036 Msa0603380:five_prime_UTR
AATCCCCACCTTCAATGTCA+TGG 0.576613 4_2:-47870755 Msa0603380:CDS
GCAATTAGTGGTAGAAGTAG+GGG 0.577399 4_2:-47871047 Msa0603380:CDS
AATGCAACTAAACCTATAGC+AGG 0.577430 4_2:+47869160 None:intergenic
CTCCAGTATTCCTCAATCGA+AGG 0.577951 4_2:+47872820 None:intergenic
GTAAGGGGCTCCGTCTTGTG+TGG 0.578517 4_2:-47869690 Msa0603380:three_prime_UTR
AGCACTGCTTTGTTCAACAA+TGG 0.578791 4_2:-47875026 Msa0603380:five_prime_UTR
CTGTAACTCATCCACCAACT+CGG 0.579225 4_2:+47869599 None:intergenic
TGGAACATGTTAATGTTGAG+GGG 0.580928 4_2:-47872720 Msa0603380:five_prime_UTR
GCAAGGTATGACAGAGTGGT+GGG 0.582604 4_2:-47869793 Msa0603380:three_prime_UTR
TATAGTTAAGAAATTAGTTG+TGG 0.584553 4_2:-47874206 Msa0603380:five_prime_UTR
CACCTCCGAATCAATCTCTA+GGG 0.584744 4_2:-47875582 Msa0603380:five_prime_UTR
ATTTATATCAGTTGGATGGG+AGG 0.586207 4_2:-47870704 Msa0603380:CDS
TCAAGTAATGATAAAATGGA+AGG 0.588534 4_2:-47873277 Msa0603380:five_prime_UTR
TAGACGCATTATTATATGCA+GGG 0.589592 4_2:+47874707 None:intergenic
AAAATGAAGTAGTAAAAGAG+TGG 0.590171 4_2:+47874658 None:intergenic
TGGTGAAACTGGATTAGGAT+GGG 0.590498 4_2:-47873035 Msa0603380:five_prime_UTR
CAAACCACACCAGCAGGCTA+CGG 0.591450 4_2:+47869251 None:intergenic
GGCTTCTTGAGCATTAGTTG+GGG 0.591786 4_2:+47870429 None:intergenic
ACGCCGTGTGCCACACAAGA+CGG 0.592408 4_2:+47869680 None:intergenic
TCAACATTAACATGTTCCAC+AGG 0.594898 4_2:+47872724 None:intergenic
GGCAAGGTATGACAGAGTGG+TGG 0.595950 4_2:-47869794 Msa0603380:three_prime_UTR
AACTTTCCGAAGCCACCAGA+TGG 0.597239 4_2:-47870628 Msa0603380:intron
TCCTGAATTGGTTCAACCTG+TGG 0.597923 4_2:-47872740 Msa0603380:five_prime_UTR
AGAGCGCTTTCAACATTCTG+GGG 0.598087 4_2:-47871105 Msa0603380:CDS
TTCATTAGAATAAATGGACG+TGG 0.598170 4_2:-47873190 Msa0603380:five_prime_UTR
TTCAACAATGGTTTAAGCTG+TGG 0.599006 4_2:-47875014 Msa0603380:five_prime_UTR
GGAATAAGAAAATTTGTAAG+GGG 0.599514 4_2:-47869705 Msa0603380:three_prime_UTR
GTTTACAACTTGCATTGTAG+GGG 0.600193 4_2:+47875667 None:intergenic
ACTTTATTTAAACAGTTGTG+TGG 0.602388 4_2:-47871239 Msa0603380:CDS
TAGTTGTTCAGATGAGTGGT+GGG 0.602613 4_2:-47872993 Msa0603380:five_prime_UTR
TGGATGAATGAGATATTGAA+TGG 0.602809 4_2:-47871302 Msa0603380:CDS
TTAGTTGTTCAGATGAGTGG+TGG 0.603094 4_2:-47872994 Msa0603380:five_prime_UTR
CTTGGTTGAGCAAAATTAGG+AGG 0.603163 4_2:+47874903 None:intergenic
TTACTCCAGCACACTCCCAA+GGG 0.603489 4_2:+47869736 None:intergenic
TGCTCAAGAAGCCTTTAACC+GGG 0.605100 4_2:-47870419 Msa0603380:CDS
CCTTAGTAATTAATTACCAG+TGG 0.606215 4_2:+47869136 None:intergenic
ACATGCCATGACATTGAAGG+TGG 0.607026 4_2:+47870750 None:intergenic
ACTGATTCGTTTCCACACCC+AGG 0.608955 4_2:-47873734 Msa0603380:intron
TTTGTGTATACACTTGCTAT+GGG 0.610480 4_2:-47871149 Msa0603380:CDS
GGCATAGCAAGATCAAAATG+AGG 0.611060 4_2:+47874849 None:intergenic
AAAGGATATCCTGATAAAGA+GGG 0.611877 4_2:-47870508 Msa0603380:CDS
TTGGGAGTGTGCTGGAGTAA+TGG 0.613027 4_2:-47869733 Msa0603380:three_prime_UTR
TACCCTAGAGATTGATTCGG+AGG 0.613044 4_2:+47875580 None:intergenic
AGCTGCATGTATTCCTGAGG+CGG 0.613635 4_2:-47870806 Msa0603380:CDS
AACCAATTCAGGATCCATAG+AGG 0.615080 4_2:+47872750 None:intergenic
TCAAGGTAGTGAAAGACAAG+AGG 0.615234 4_2:-47870158 Msa0603380:CDS
GGTGCACAAGTGACTGGTCA+AGG 0.615876 4_2:-47872487 Msa0603380:five_prime_UTR
TGACCACCAGAGTAAACACC+AGG 0.616969 4_2:+47875428 None:intergenic
GCACCTTCAGTATATTCACT+AGG 0.618197 4_2:+47872505 None:intergenic
GCTCATGCTACTTTCTATGG+TGG 0.618802 4_2:-47875395 Msa0603380:five_prime_UTR
CATCATTATGAGATTGATGG+AGG 0.622802 4_2:-47872667 Msa0603380:five_prime_UTR
AGGGAGATCAACCAAGACAA+AGG 0.623380 4_2:-47870128 Msa0603380:CDS
ACAAATATACACAATTGTGA+AGG 0.624210 4_2:+47868991 None:intergenic
AAGACCTTGGGTAGGCACAT+GGG 0.624761 4_2:+47872543 None:intergenic
AACTCGACAGAAAATCCAGA+TGG 0.625031 4_2:+47869944 None:intergenic
GTTTAATAGTTTGAATCCGG+AGG 0.626692 4_2:-47869625 Msa0603380:three_prime_UTR
TGGGTCTTAACGCTAAATTG+TGG 0.627260 4_2:+47870319 None:intergenic
GGTAGAAGTAGGGGCTACAG+GGG 0.627456 4_2:-47871038 Msa0603380:CDS
TTTGGTGGCCTGTTTGTGTG+AGG 0.627721 4_2:-47869383 Msa0603380:three_prime_UTR
AGTAATGTATGGGGTTTCCG+GGG 0.629849 4_2:-47874743 Msa0603380:five_prime_UTR
TCTTAAGTTTGTGATACAAG+TGG 0.630391 4_2:-47874526 Msa0603380:five_prime_UTR
GCAAGATCAAAATGAGGACG+AGG 0.630560 4_2:+47874855 None:intergenic
ATGCCATGACATTGAAGGTG+GGG 0.632052 4_2:+47870752 None:intergenic
TCTTCATGCAATTAACACAC+CGG 0.632673 4_2:-47870656 Msa0603380:CDS
GGCTTCGGAAAGTTTAACGC+CGG 0.635053 4_2:+47870637 None:intergenic
ATGACAGTTGAAGAGAAGGT+GGG 0.635335 4_2:-47871176 Msa0603380:CDS
GGAACATGTTAATGTTGAGG+GGG 0.640316 4_2:-47872719 Msa0603380:five_prime_UTR
ACGTGATATCATAAGACCAA+AGG 0.641000 4_2:-47871009 Msa0603380:CDS
GAACATGTTAATGTTGAGGG+GGG 0.642314 4_2:-47872718 Msa0603380:five_prime_UTR
ACCAATTCAGGATCCATAGA+GGG 0.643334 4_2:+47872751 None:intergenic
GCAGCAAGAAGGGTTTGGCA+AGG 0.645361 4_2:-47869810 Msa0603380:three_prime_UTR
TTGATGACAATTATGCAACT+GGG 0.647938 4_2:-47872789 Msa0603380:five_prime_UTR
AACCAAGTGATAATGGTGGT+TGG 0.649043 4_2:-47874887 Msa0603380:five_prime_UTR
TGTGGAACATGTTAATGTTG+AGG 0.649163 4_2:-47872722 Msa0603380:five_prime_UTR
AGATCAAAATGAGGACGAGG+AGG 0.649689 4_2:+47874858 None:intergenic
GCTTCTTGAGCATTAGTTGG+GGG 0.650707 4_2:+47870430 None:intergenic
TCCGAATCAATCTCTAGGGT+AGG 0.651811 4_2:-47875578 Msa0603380:five_prime_UTR
TGGGTGTGGAAACGAATCAG+TGG 0.653753 4_2:+47873736 None:intergenic
CGCTCATCATTAGAAATATG+CGG 0.656782 4_2:+47870963 None:intergenic
GTACCTAGTGAATATACTGA+AGG 0.660409 4_2:-47872508 Msa0603380:five_prime_UTR
CATGCCATGACATTGAAGGT+GGG 0.661703 4_2:+47870751 None:intergenic
GATCAAAATGAGGACGAGGA+GGG 0.663864 4_2:+47874859 None:intergenic
CGCATATTTCTAATGATGAG+CGG 0.664511 4_2:-47870962 Msa0603380:CDS
AATCACAGAGAAAGGAACGA+AGG 0.671127 4_2:+47873782 None:intergenic
ATGAGTTACAGGTTATGTCG+TGG 0.674533 4_2:-47869587 Msa0603380:three_prime_UTR
CAAATAATAATACCATCTGG+TGG 0.678592 4_2:+47870616 None:intergenic
AGTGTGCAAATGACAAAGAG+TGG 0.680419 4_2:-47874974 Msa0603380:five_prime_UTR
TGTGCTCAACATCACACCGA+AGG 0.680699 4_2:-47871526 Msa0603380:intron
GCACAAGTGACTGGTCAAGG+TGG 0.681395 4_2:-47872484 Msa0603380:five_prime_UTR
TATAGCTGCATGTATTCCTG+AGG 0.681478 4_2:-47870809 Msa0603380:CDS
GTATGACTTCACTTCAAAGG+GGG 0.681704 4_2:-47871331 Msa0603380:CDS
TTTGGCAAGGTATGACAGAG+TGG 0.687125 4_2:-47869797 Msa0603380:three_prime_UTR
TGTGCTGGAGTAATGGCGAG+AGG 0.687653 4_2:-47869726 Msa0603380:three_prime_UTR
GAAACGAATCAGTGGAACGA+CGG 0.689262 4_2:+47873744 None:intergenic
CTAACCTGCGGTAAGCAACA+GGG 0.690792 4_2:+47874787 None:intergenic
ACTAAACCTATAGCAGGACA+AGG 0.692719 4_2:+47869166 None:intergenic
AAAGGAAAGTAACTAACCTG+CGG 0.699656 4_2:+47874775 None:intergenic
TACTCCAGCACACTCCCAAG+GGG 0.705173 4_2:+47869737 None:intergenic
CTCAGTCTTAGGCTGCTGTG+CGG 0.708610 4_2:-47869444 Msa0603380:three_prime_UTR
GTACCTCCAAGACCTTGGGT+AGG 0.709359 4_2:+47872535 None:intergenic
AGGCATTCATACATCGAACA+GGG 0.709805 4_2:+47871276 None:intergenic
GTGGTGCTGCTGTTAGCGTG+GGG 0.711716 4_2:-47869361 Msa0603380:three_prime_UTR
TGATGACAATTATGCAACTG+GGG 0.713435 4_2:-47872788 Msa0603380:five_prime_UTR
TGTATGACTTCACTTCAAAG+GGG 0.715580 4_2:-47871332 Msa0603380:CDS
ACAACCAAAACAGCACAGGG+AGG 0.718622 4_2:+47869875 None:intergenic
GCTCAACCAAGTGATAATGG+TGG 0.719451 4_2:-47874891 Msa0603380:five_prime_UTR
TGAATGCAGTAGCATCTATG+GGG 0.730463 4_2:+47869049 None:intergenic
CATTCATACATCGAACAGGG+TGG 0.739476 4_2:+47871279 None:intergenic
TTGTCTGTAGGAGAAACCTG+AGG 0.744782 4_2:-47872872 Msa0603380:intron
TCATCATTAGAAATATGCGG+CGG 0.753629 4_2:+47870966 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATAATAAATTATAAA+GGG + chr4_2:47870724-47870743 None:intergenic 0.0%
!!! TTTTTTATAATAAATTATAA+AGG + chr4_2:47870725-47870744 None:intergenic 0.0%
!!! ATTTTATCTTTAAGTTATTT+AGG - chr4_2:47870062-47870081 Msa0603380:exon 10.0%
!!! AAGTTTATTTTATTTTACTT+TGG - chr4_2:47870090-47870109 Msa0603380:CDS 10.0%
!! TATACTACTAAAATAAATTA+AGG + chr4_2:47870346-47870365 None:intergenic 10.0%
!! TTGAATTATAGAAATAAAAA+AGG + chr4_2:47871297-47871316 None:intergenic 10.0%
!!! ATGTTTTTTTAGGTTTAATT+AGG + chr4_2:47869484-47869503 None:intergenic 15.0%
!!! ATTATGTTAATTTTTTGTGT+TGG - chr4_2:47869521-47869540 Msa0603380:three_prime_UTR 15.0%
!! TGAAAAGAAAAAAAAATTAG+AGG - chr4_2:47870271-47870290 Msa0603380:CDS 15.0%
!!! TAAAAATAATATAAAGTACC+AGG - chr4_2:47870308-47870327 Msa0603380:CDS 15.0%
!!! TTTTCTTTTTCATTAATTGA+GGG + chr4_2:47870374-47870393 None:intergenic 15.0%
!!! ATATATTATTGACTTTTCTT+TGG - chr4_2:47870401-47870420 Msa0603380:CDS 15.0%
!!! GATTTTAGAAAAAATAGTAT+GGG + chr4_2:47870693-47870712 None:intergenic 15.0%
!! TAAATTATAAAGGGTAAAAA+AGG + chr4_2:47870715-47870734 None:intergenic 15.0%
!!! TTTTTTTTTATTGTTGAGAA+TGG + chr4_2:47870823-47870842 None:intergenic 15.0%
!!! GTAGTTTATGATTTTTTTTA+CGG - chr4_2:47870996-47871015 Msa0603380:CDS 15.0%
!!! GATTAATGAAAATTTTTACA+TGG - chr4_2:47871206-47871225 Msa0603380:CDS 15.0%
!! ATATTGTCAAATTTATAAGA+TGG - chr4_2:47871339-47871358 Msa0603380:CDS 15.0%
!!! TTATTCTTTAAAGTTTTTGA+GGG + chr4_2:47871538-47871557 None:intergenic 15.0%
!! ATAATTTATATAAGATCTGA+AGG - chr4_2:47871728-47871747 Msa0603380:intron 15.0%
!! TAAAAAATATCGTAATAAGT+CGG - chr4_2:47871793-47871812 Msa0603380:intron 15.0%
!! TAATTACAAATCAAAATCAA+AGG + chr4_2:47872775-47872794 None:intergenic 15.0%
!!! ATATATTTTACCTTGAAATA+AGG + chr4_2:47873711-47873730 None:intergenic 15.0%
!! TAACTAATGTTTAATATTTG+AGG + chr4_2:47875534-47875553 None:intergenic 15.0%
!! TGTATATGTTAAATAAAACT+AGG - chr4_2:47875672-47875691 Msa0603380:five_prime_UTR 15.0%
!! AAAAATACTAGAAATAGCTA+TGG - chr4_2:47869125-47869144 Msa0603380:three_prime_UTR 20.0%
!!! GTAACATTTCATGTTTTTTT+AGG + chr4_2:47869494-47869513 None:intergenic 20.0%
!! TACATTACTTGAACAAAAAA+AGG + chr4_2:47869887-47869906 None:intergenic 20.0%
!!! TTTTTTGTTCAAGTAATGTA+TGG - chr4_2:47869887-47869906 Msa0603380:three_prime_UTR 20.0%
!!! TTTTTGTTCAAGTAATGTAT+GGG - chr4_2:47869888-47869907 Msa0603380:three_prime_UTR 20.0%
!! AATATTTAGGTCTCTTAATA+AGG - chr4_2:47870140-47870159 Msa0603380:CDS 20.0%
!! TTAAGGTTAAATTATATTCC+TGG + chr4_2:47870329-47870348 None:intergenic 20.0%
!!! CTTTTCTTTTTCATTAATTG+AGG + chr4_2:47870375-47870394 None:intergenic 20.0%
!! TATAGTTAAGAAATTAGTTG+TGG - chr4_2:47870435-47870454 Msa0603380:CDS 20.0%
!!! ATAAGCTATAAGCTATTTTT+TGG + chr4_2:47870503-47870522 None:intergenic 20.0%
!!! GGATTTTAGAAAAAATAGTA+TGG + chr4_2:47870694-47870713 None:intergenic 20.0%
!! TGTTCTTCATTAGATTTATT+TGG - chr4_2:47871135-47871154 Msa0603380:CDS 20.0%
!! TTTGACAATATACAATAATG+AGG + chr4_2:47871330-47871349 None:intergenic 20.0%
!!! CAAAATTTCTTTTCATATTC+AGG + chr4_2:47871415-47871434 None:intergenic 20.0%
!! GTAAAGTTCATTAGAATAAA+TGG - chr4_2:47871445-47871464 Msa0603380:CDS 20.0%
!!! CTTATTCTTTAAAGTTTTTG+AGG + chr4_2:47871539-47871558 None:intergenic 20.0%
!! TTCAAAAGTAAACAAGTTAA+TGG - chr4_2:47872340-47872359 Msa0603380:intron 20.0%
!!! TTTTTTTTGGGAATGTAAAT+AGG + chr4_2:47872539-47872558 None:intergenic 20.0%
!!! TGTCAACATTCATTTTTTTT+GGG + chr4_2:47872551-47872570 None:intergenic 20.0%
!!! ATGTCAACATTCATTTTTTT+TGG + chr4_2:47872552-47872571 None:intergenic 20.0%
!! TTATGACAAATCAAAATCAA+TGG + chr4_2:47872593-47872612 None:intergenic 20.0%
!! TAATTACAATTCAAAATCAG+AGG + chr4_2:47872637-47872656 None:intergenic 20.0%
!! TAATTACAATTCAAAATCAG+AGG + chr4_2:47872637-47872656 None:intergenic 20.0%
!! TAATTACAATTCAAAATCAG+AGG + chr4_2:47872637-47872656 None:intergenic 20.0%
!!! AATGTTAACATTAGTTTGAA+TGG - chr4_2:47872878-47872897 Msa0603380:intron 20.0%
!! ACAACTGTTTAAATAAAGTT+GGG + chr4_2:47873401-47873420 None:intergenic 20.0%
!! AATCTTATACTTTATCATGA+TGG - chr4_2:47873747-47873766 Msa0603380:five_prime_UTR 20.0%
!!! TCTAACTAACCTTTTTTAAT+AGG - chr4_2:47873781-47873800 Msa0603380:five_prime_UTR 20.0%
!! CAATACAATCCTATTAAAAA+AGG + chr4_2:47873793-47873812 None:intergenic 20.0%
!!! CTTTTTTAATAGGATTGTAT+TGG - chr4_2:47873791-47873810 Msa0603380:five_prime_UTR 20.0%
!! ATACAAATAATAATACCATC+TGG + chr4_2:47874031-47874050 None:intergenic 20.0%
!! AATTATAAAACAAACTTCCT+CGG + chr4_2:47874073-47874092 None:intergenic 20.0%
!!! TTTTGTTTTTTCTCTTAAAC+AGG - chr4_2:47874091-47874110 Msa0603380:five_prime_UTR 20.0%
!! TTAAACAGGTAGATATTATT+TGG - chr4_2:47874105-47874124 Msa0603380:five_prime_UTR 20.0%
!!! AGATATTATTTGGTTGATAA+AGG - chr4_2:47874115-47874134 Msa0603380:five_prime_UTR 20.0%
!! AGCTATAATAACATCAATTT+GGG + chr4_2:47874344-47874363 None:intergenic 20.0%
!! AGGAATAAGAAAATTTGTAA+GGG - chr4_2:47874935-47874954 Msa0603380:five_prime_UTR 20.0%
! AATCACTTTGACATATAGTT+AGG - chr4_2:47869359-47869378 Msa0603380:three_prime_UTR 25.0%
! ATCACTTTGACATATAGTTA+GGG - chr4_2:47869360-47869379 Msa0603380:three_prime_UTR 25.0%
! TATCCACATGTTTGTATTTA+CGG + chr4_2:47869435-47869454 None:intergenic 25.0%
!!! TTTTTTGTGTTGGTGTTTTT+AGG - chr4_2:47869531-47869550 Msa0603380:three_prime_UTR 25.0%
!! TTTTGTTCAAGTAATGTATG+GGG - chr4_2:47869889-47869908 Msa0603380:three_prime_UTR 25.0%
! AAAATGAAGTAGTAAAAGAG+TGG + chr4_2:47869986-47870005 None:intergenic 25.0%
! GATACAAGTGGTAAATATTT+AGG - chr4_2:47870127-47870146 Msa0603380:CDS 25.0%
! AAAAATAGTATGGGTAAAAG+TGG + chr4_2:47870684-47870703 None:intergenic 25.0%
! ATTATACTTCAATCGTTTGT+TGG - chr4_2:47870967-47870986 Msa0603380:CDS 25.0%
!! ATTTCTGATTTGATTGTGTT+TGG - chr4_2:47871076-47871095 Msa0603380:CDS 25.0%
!! TGATTGTGTTTGGATTTTAT+TGG - chr4_2:47871086-47871105 Msa0603380:CDS 25.0%
! AATCATTTGAATACACACAA+CGG + chr4_2:47871170-47871189 None:intergenic 25.0%
! TAGAAATAAAAAAGGACACA+TGG + chr4_2:47871289-47871308 None:intergenic 25.0%
!! TTCCATTTTATCATTACTTG+AGG + chr4_2:47871365-47871384 None:intergenic 25.0%
! TCAAGTAATGATAAAATGGA+AGG - chr4_2:47871364-47871383 Msa0603380:CDS 25.0%
! TAGATACTATGAAGAAAGAT+TGG - chr4_2:47871560-47871579 Msa0603380:intron 25.0%
! AATCATCATTATGAGATTGA+TGG - chr4_2:47871971-47871990 Msa0603380:intron 25.0%
!! TTTGCCTAATTTTATGAATG+AGG - chr4_2:47872066-47872085 Msa0603380:intron 25.0%
! ATGACTAACAAACCTATTAA+GGG - chr4_2:47872211-47872230 Msa0603380:intron 25.0%
! TTTGATATCTCAATCGAATT+TGG - chr4_2:47872291-47872310 Msa0603380:intron 25.0%
!! TGTCATAATATTAGCTTGAA+TGG - chr4_2:47872605-47872624 Msa0603380:five_prime_UTR 25.0%
! ACTAAATATGACTGTAAACT+GGG - chr4_2:47873042-47873061 Msa0603380:five_prime_UTR 25.0%
! CAAAACAATCGTTGAAATTA+TGG + chr4_2:47873092-47873111 None:intergenic 25.0%
! CACAACTGTTTAAATAAAGT+TGG + chr4_2:47873402-47873421 None:intergenic 25.0%
!! ACTTTATTTAAACAGTTGTG+TGG - chr4_2:47873402-47873421 Msa0603380:intron 25.0%
!! AAAAAAGGTTAGTTAGACAA+CGG + chr4_2:47873778-47873797 None:intergenic 25.0%
! TGTTTCACATTTATATCAGT+TGG - chr4_2:47873929-47873948 Msa0603380:five_prime_UTR 25.0%
! AGTTGTATAGAAAGATCATT+TGG - chr4_2:47874262-47874281 Msa0603380:five_prime_UTR 25.0%
! CAGCTATAATAACATCAATT+TGG + chr4_2:47874345-47874364 None:intergenic 25.0%
! TCATCATTAGGTATGTAATT+TGG + chr4_2:47874439-47874458 None:intergenic 25.0%
!!! ACAATATTGCTGCTTTATTA+TGG - chr4_2:47874545-47874564 Msa0603380:five_prime_UTR 25.0%
!! CTGCTTTATTATGGAATAAT+AGG - chr4_2:47874554-47874573 Msa0603380:five_prime_UTR 25.0%
!! AGCTAGTTAAATCAACATTT+TGG - chr4_2:47874654-47874673 Msa0603380:five_prime_UTR 25.0%
!!! TCAACATTTTGGATTGATTT+TGG - chr4_2:47874665-47874684 Msa0603380:five_prime_UTR 25.0%
! GAGGAATAAGAAAATTTGTA+AGG - chr4_2:47874934-47874953 Msa0603380:five_prime_UTR 25.0%
! GGAATAAGAAAATTTGTAAG+GGG - chr4_2:47874936-47874955 Msa0603380:five_prime_UTR 25.0%
! AGAGTTTAATAGTTTGAATC+CGG - chr4_2:47875013-47875032 Msa0603380:five_prime_UTR 25.0%
! CCATTAAAAAACATACAAGT+TGG + chr4_2:47875107-47875126 None:intergenic 25.0%
!!! CCAACTTGTATGTTTTTTAA+TGG - chr4_2:47875104-47875123 Msa0603380:intron 25.0%
!!! TGTATGTTTTTTAATGGTGT+TGG - chr4_2:47875110-47875129 Msa0603380:intron 25.0%
! TTAGTTAAGACTTGTAAAGT+TGG - chr4_2:47875547-47875566 Msa0603380:five_prime_UTR 25.0%
! ACAAATATACACAATTGTGA+AGG + chr4_2:47875653-47875672 None:intergenic 25.0%
! TAAATAAAACTAGGCATACA+AGG - chr4_2:47875681-47875700 Msa0603380:five_prime_UTR 25.0%
!! AAAGCAATGTAGAGCATTTT+GGG + chr4_2:47869153-47869172 None:intergenic 30.0%
AGAAAATATGAGGGCAAAAA+GGG + chr4_2:47869317-47869336 None:intergenic 30.0%
GACATAATCTCGATGTATTA+GGG + chr4_2:47869405-47869424 None:intergenic 30.0%
TGACATAATCTCGATGTATT+AGG + chr4_2:47869406-47869425 None:intergenic 30.0%
AATTTGTACAGTCAAGGTTA+CGG - chr4_2:47869573-47869592 Msa0603380:three_prime_UTR 30.0%
GTAGCAGTAATGAAAATTGA+AGG + chr4_2:47869708-47869727 None:intergenic 30.0%
TCAGCAATCTTAAGAAACAT+AGG + chr4_2:47869816-47869835 None:intergenic 30.0%
TAGACGCATTATTATATGCA+GGG + chr4_2:47869937-47869956 None:intergenic 30.0%
ATAGACGCATTATTATATGC+AGG + chr4_2:47869938-47869957 None:intergenic 30.0%
TCTTAAGTTTGTGATACAAG+TGG - chr4_2:47870115-47870134 Msa0603380:CDS 30.0%
GTTAAGAAATTAGTTGTGGT+AGG - chr4_2:47870439-47870458 Msa0603380:CDS 30.0%
TGAAATAAGCTATAAGCTCA+TGG + chr4_2:47870584-47870603 None:intergenic 30.0%
TTCAAGAGAAATGAAAACCT+GGG + chr4_2:47870927-47870946 None:intergenic 30.0%
TACGGAAATCATTGTGAAAA+AGG - chr4_2:47871014-47871033 Msa0603380:CDS 30.0%
ACGGAAATCATTGTGAAAAA+GGG - chr4_2:47871015-47871034 Msa0603380:CDS 30.0%
AGAAATGAGAAAGATACTTG+GGG + chr4_2:47871062-47871081 None:intergenic 30.0%
CAGAAATGAGAAAGATACTT+GGG + chr4_2:47871063-47871082 None:intergenic 30.0%
TCAGAAATGAGAAAGATACT+TGG + chr4_2:47871064-47871083 None:intergenic 30.0%
! TTGTGTTTGGATTTTATTGG+TGG - chr4_2:47871089-47871108 Msa0603380:CDS 30.0%
TTCATTAGAATAAATGGACG+TGG - chr4_2:47871451-47871470 Msa0603380:exon 30.0%
TGGATCATCATTTAAATGGA+AGG - chr4_2:47871471-47871490 Msa0603380:five_prime_UTR 30.0%
!! AAGTTTTTGAGGGAACTTTT+CGG + chr4_2:47871528-47871547 None:intergenic 30.0%
ATCAACTTATCTTTGTCTGT+AGG - chr4_2:47871757-47871776 Msa0603380:intron 30.0%
!!! TTACGATATTTTTTAGCCTC+AGG + chr4_2:47871788-47871807 None:intergenic 30.0%
! TTTGATGACAATTATGCAAC+TGG - chr4_2:47871851-47871870 Msa0603380:intron 30.0%
! TTGATGACAATTATGCAACT+GGG - chr4_2:47871852-47871871 Msa0603380:intron 30.0%
! CCTAATTTTATGAATGAGGT+GGG - chr4_2:47872070-47872089 Msa0603380:intron 30.0%
!!! AGGTTTGTTAGTCATGTTTT+GGG + chr4_2:47872206-47872225 None:intergenic 30.0%
!!! TAGGTTTGTTAGTCATGTTT+TGG + chr4_2:47872207-47872226 None:intergenic 30.0%
CATGACTAACAAACCTATTA+AGG - chr4_2:47872210-47872229 Msa0603380:intron 30.0%
TGACTAACAAACCTATTAAG+GGG - chr4_2:47872212-47872231 Msa0603380:intron 30.0%
CAGCAATGACTGTTATAAAT+CGG - chr4_2:47872380-47872399 Msa0603380:intron 30.0%
AATGACTGTTATAAATCGGA+TGG - chr4_2:47872384-47872403 Msa0603380:intron 30.0%
GTTTGATTGAGAATGAAACA+AGG - chr4_2:47872458-47872477 Msa0603380:five_prime_UTR 30.0%
! ATGATGATTCTAGGAAATCT+TGG - chr4_2:47872509-47872528 Msa0603380:five_prime_UTR 30.0%
! AGTCATAACATTAGCTTGAA+TGG - chr4_2:47872674-47872693 Msa0603380:five_prime_UTR 30.0%
! AGTCATAACATTAGCTTGAA+TGG - chr4_2:47872674-47872693 Msa0603380:five_prime_UTR 30.0%
! AGTCATAACATTAGCTTGAA+TGG - chr4_2:47872674-47872693 Msa0603380:five_prime_UTR 30.0%
TAATGTCGAATCAAAATCAG+AGG + chr4_2:47872910-47872929 None:intergenic 30.0%
CTTATACTTCAACACCAATA+AGG - chr4_2:47872978-47872997 Msa0603380:intron 30.0%
AAAATGTTATGACACTCTCT+CGG + chr4_2:47873007-47873026 None:intergenic 30.0%
TACAGTCATATTTAGTCACA+CGG + chr4_2:47873038-47873057 None:intergenic 30.0%
GACTAAATATGACTGTAAAC+TGG - chr4_2:47873041-47873060 Msa0603380:five_prime_UTR 30.0%
! GAAGAAAGTATGCACTTTAT+TGG - chr4_2:47873220-47873239 Msa0603380:five_prime_UTR 30.0%
ATGTATGACTTCACTTCAAA+GGG - chr4_2:47873308-47873327 Msa0603380:intron 30.0%
TGGATGAATGAGATATTGAA+TGG - chr4_2:47873339-47873358 Msa0603380:intron 30.0%
! ATGTATGAATGCCTTTAGAA+TGG - chr4_2:47873374-47873393 Msa0603380:intron 30.0%
! GGTGATTTGCAATCAAAATA+TGG - chr4_2:47873423-47873442 Msa0603380:intron 30.0%
! ATTTGTGTATACACTTGCTA+TGG - chr4_2:47873491-47873510 Msa0603380:intron 30.0%
!! TTTGTGTATACACTTGCTAT+GGG - chr4_2:47873492-47873511 Msa0603380:intron 30.0%
!!! GAAGTTTTAGAAGCAATTAG+TGG - chr4_2:47873582-47873601 Msa0603380:intron 30.0%
AATTGAAAAGTTGGATCCTT+TGG + chr4_2:47873651-47873670 None:intergenic 30.0%
GATTGTATTGGATGTATTGA+TGG - chr4_2:47873803-47873822 Msa0603380:five_prime_UTR 30.0%
TCACATTTATATCAGTTGGA+TGG - chr4_2:47873933-47873952 Msa0603380:five_prime_UTR 30.0%
CACATTTATATCAGTTGGAT+GGG - chr4_2:47873934-47873953 Msa0603380:five_prime_UTR 30.0%
CAAATAATAATACCATCTGG+TGG + chr4_2:47874028-47874047 None:intergenic 30.0%
! ATTTCTACAAGTTTTTACCG+AGG - chr4_2:47874053-47874072 Msa0603380:five_prime_UTR 30.0%
TAAAGGATATCCTGATAAAG+AGG - chr4_2:47874132-47874151 Msa0603380:five_prime_UTR 30.0%
AAAGGATATCCTGATAAAGA+GGG - chr4_2:47874133-47874152 Msa0603380:five_prime_UTR 30.0%
TGATAACCATCAACAATATC+CGG + chr4_2:47874466-47874485 None:intergenic 30.0%
!! GATATTGTTGATGGTTATCA+AGG - chr4_2:47874466-47874485 Msa0603380:five_prime_UTR 30.0%
CCTTAGTAATTAATTACCAG+TGG + chr4_2:47875508-47875527 None:intergenic 30.0%
CCACTGGTAATTAATTACTA+AGG - chr4_2:47875505-47875524 Msa0603380:five_prime_UTR 30.0%
GTTTACAACTTGCATTGTAG+GGG + chr4_2:47868977-47868996 None:intergenic 35.0%
GGTTTACAACTTGCATTGTA+GGG + chr4_2:47868978-47868997 None:intergenic 35.0%
TGGTTTACAACTTGCATTGT+AGG + chr4_2:47868979-47868998 None:intergenic 35.0%
!! GAAAGCAATGTAGAGCATTT+TGG + chr4_2:47869154-47869173 None:intergenic 35.0%
ATTGTTGAAGCTAGAATTCC+TGG - chr4_2:47869195-47869214 Msa0603380:three_prime_UTR 35.0%
GGTAATATGTTACATACCCA+TGG + chr4_2:47869289-47869308 None:intergenic 35.0%
CAGAAAATATGAGGGCAAAA+AGG + chr4_2:47869318-47869337 None:intergenic 35.0%
! CTTTTTGCCCTCATATTTTC+TGG - chr4_2:47869316-47869335 Msa0603380:three_prime_UTR 35.0%
CCTCAATCCAGAAAATATGA+GGG + chr4_2:47869326-47869345 None:intergenic 35.0%
! CCTCATATTTTCTGGATTGA+GGG - chr4_2:47869324-47869343 Msa0603380:three_prime_UTR 35.0%
TCACCGTAAATACAAACATG+TGG - chr4_2:47869429-47869448 Msa0603380:three_prime_UTR 35.0%
!!! TTTGTGTTGGTGTTTTTAGG+AGG - chr4_2:47869534-47869553 Msa0603380:three_prime_UTR 35.0%
TACGGAAATTTGTACAGTCA+AGG - chr4_2:47869567-47869586 Msa0603380:three_prime_UTR 35.0%
TTCAACAATGGTTTAAGCTG+TGG - chr4_2:47869627-47869646 Msa0603380:three_prime_UTR 35.0%
TCACTTGGTTGAGCAAAATT+AGG + chr4_2:47869744-47869763 None:intergenic 35.0%
TTTGCTCAACCAAGTGATAA+TGG - chr4_2:47869747-47869766 Msa0603380:three_prime_UTR 35.0%
AAAGGAAAGTAACTAACCTG+CGG + chr4_2:47869869-47869888 None:intergenic 35.0%
ATTATTATATGCAGGGCTTG+GGG + chr4_2:47869930-47869949 None:intergenic 35.0%
CATTATTATATGCAGGGCTT+GGG + chr4_2:47869931-47869950 None:intergenic 35.0%
TTCCAACTGAATTAAGCTCT+TGG - chr4_2:47869957-47869976 Msa0603380:three_prime_UTR 35.0%
TTCCAAGAGCTTAATTCAGT+TGG + chr4_2:47869962-47869981 None:intergenic 35.0%
!! TGAAAAAGTGTTACCAAACG+GGG + chr4_2:47870561-47870580 None:intergenic 35.0%
!! GTGAAAAAGTGTTACCAAAC+GGG + chr4_2:47870562-47870581 None:intergenic 35.0%
!! GGTGAAAAAGTGTTACCAAA+CGG + chr4_2:47870563-47870582 None:intergenic 35.0%
GTTCAAGAGAAATGAAAACC+TGG + chr4_2:47870928-47870947 None:intergenic 35.0%
!! TTGGATTTTATTGGTGGATG+TGG - chr4_2:47871095-47871114 Msa0603380:CDS 35.0%
GGCCTCAAGTAATGATAAAA+TGG - chr4_2:47871360-47871379 Msa0603380:CDS 35.0%
!!! TGGAAGGACTCAGTTTTAAA+TGG - chr4_2:47871380-47871399 Msa0603380:CDS 35.0%
GACGTGGATCATCATTTAAA+TGG - chr4_2:47871467-47871486 Msa0603380:exon 35.0%
!! GATTCACCAAGATTTTGAAG+AGG - chr4_2:47871495-47871514 Msa0603380:five_prime_UTR 35.0%
!! CTTTGGAAGTTTCTGAAGTA+TGG - chr4_2:47871586-47871605 Msa0603380:intron 35.0%
!! TTTCTGAAGTATGGTGAAAC+TGG - chr4_2:47871595-47871614 Msa0603380:intron 35.0%
AAGTATGGTGAAACTGGATT+AGG - chr4_2:47871601-47871620 Msa0603380:intron 35.0%
! GTGGTGGGATAGAAAAATTA+AGG - chr4_2:47871663-47871682 Msa0603380:intron 35.0%
TGATGACAATTATGCAACTG+GGG - chr4_2:47871853-47871872 Msa0603380:intron 35.0%
TCAACATTAACATGTTCCAC+AGG + chr4_2:47871920-47871939 None:intergenic 35.0%
TGTGGAACATGTTAATGTTG+AGG - chr4_2:47871919-47871938 Msa0603380:intron 35.0%
GTGGAACATGTTAATGTTGA+GGG - chr4_2:47871920-47871939 Msa0603380:intron 35.0%
TGGAACATGTTAATGTTGAG+GGG - chr4_2:47871921-47871940 Msa0603380:intron 35.0%
CATCATTATGAGATTGATGG+AGG - chr4_2:47871974-47871993 Msa0603380:intron 35.0%
! GCCTAATTTTATGAATGAGG+TGG - chr4_2:47872069-47872088 Msa0603380:intron 35.0%
CCCACCTCATTCATAAAATT+AGG + chr4_2:47872073-47872092 None:intergenic 35.0%
! AATTTTATGAATGAGGTGGG+TGG - chr4_2:47872073-47872092 Msa0603380:intron 35.0%
GTACCTAGTGAATATACTGA+AGG - chr4_2:47872133-47872152 Msa0603380:intron 35.0%
! CTTTTACGATTCCCCTTAAT+AGG + chr4_2:47872226-47872245 None:intergenic 35.0%
AATCGTAAAAGAAAACGCTC+AGG - chr4_2:47872235-47872254 Msa0603380:intron 35.0%
ATCTCAATCGAATTTGGCAT+TGG - chr4_2:47872297-47872316 Msa0603380:intron 35.0%
ATAAATCGGATGGTTACCAA+AGG - chr4_2:47872394-47872413 Msa0603380:intron 35.0%
!! TACCAAAGGTCTTTTGGAAA+AGG - chr4_2:47872408-47872427 Msa0603380:intron 35.0%
!! ACCAAAGGTCTTTTGGAAAA+GGG - chr4_2:47872409-47872428 Msa0603380:intron 35.0%
TGATTGAGAATGAAACAAGG+CGG - chr4_2:47872461-47872480 Msa0603380:five_prime_UTR 35.0%
! CGGGAGATTTTTCTAAACAT+GGG - chr4_2:47872481-47872500 Msa0603380:five_prime_UTR 35.0%
! GGGAGATTTTTCTAAACATG+GGG - chr4_2:47872482-47872501 Msa0603380:five_prime_UTR 35.0%
! GGAGATTTTTCTAAACATGG+GGG - chr4_2:47872483-47872502 Msa0603380:five_prime_UTR 35.0%
GTTATGACTTATGACAAAGC+TGG + chr4_2:47872663-47872682 None:intergenic 35.0%
GTTATGACTTATGACAAAGC+TGG + chr4_2:47872663-47872682 None:intergenic 35.0%
GTTATGACTTATGACACATC+TGG + chr4_2:47872801-47872820 None:intergenic 35.0%
TCAAGTATGAAGTTCACCTT+CGG + chr4_2:47873134-47873153 None:intergenic 35.0%
CTCATTCTGCAGATTAAAGT+TGG - chr4_2:47873159-47873178 Msa0603380:five_prime_UTR 35.0%
! AGTTGGTGCTCATGTTATTA+TGG - chr4_2:47873176-47873195 Msa0603380:five_prime_UTR 35.0%
!! CTTTGAAGTGAAGTCATACA+TGG + chr4_2:47873309-47873328 None:intergenic 35.0%
CATGTATGACTTCACTTCAA+AGG - chr4_2:47873307-47873326 Msa0603380:intron 35.0%
TGTATGACTTCACTTCAAAG+GGG - chr4_2:47873309-47873328 Msa0603380:intron 35.0%
TAAAGTTGGGTCCATTCTAA+AGG + chr4_2:47873388-47873407 None:intergenic 35.0%
TCAACTGTCATTCTCTTACT+TGG + chr4_2:47873456-47873475 None:intergenic 35.0%
AAGCAATTAGTGGTAGAAGT+AGG - chr4_2:47873592-47873611 Msa0603380:intron 35.0%
AGCAATTAGTGGTAGAAGTA+GGG - chr4_2:47873593-47873612 Msa0603380:intron 35.0%
ACGTGATATCATAAGACCAA+AGG - chr4_2:47873632-47873651 Msa0603380:intron 35.0%
GGCGGTATAAATTGAAAAGT+TGG + chr4_2:47873660-47873679 None:intergenic 35.0%
TCATCATTAGAAATATGCGG+CGG + chr4_2:47873678-47873697 None:intergenic 35.0%
CGCTCATCATTAGAAATATG+CGG + chr4_2:47873681-47873700 None:intergenic 35.0%
! CGCATATTTCTAATGATGAG+CGG - chr4_2:47873679-47873698 Msa0603380:intron 35.0%
AGGAATACATGCAGCTATAT+GGG + chr4_2:47873831-47873850 None:intergenic 35.0%
ATGCGTTATAGAGGTAGAAA+AGG - chr4_2:47873863-47873882 Msa0603380:five_prime_UTR 35.0%
ATTTATATCAGTTGGATGGG+AGG - chr4_2:47873937-47873956 Msa0603380:five_prime_UTR 35.0%
TTTATATCAGTTGGATGGGA+GGG - chr4_2:47873938-47873957 Msa0603380:five_prime_UTR 35.0%
TCTTCATGCAATTAACACAC+CGG - chr4_2:47873985-47874004 Msa0603380:five_prime_UTR 35.0%
TCCTGATAAAGAGGGATATA+TGG - chr4_2:47874141-47874160 Msa0603380:five_prime_UTR 35.0%
ACCATATATCCCTCTTTATC+AGG + chr4_2:47874145-47874164 None:intergenic 35.0%
TGATACCTTATCCTAGGATA+AGG + chr4_2:47874169-47874188 None:intergenic 35.0%
CATACCTAATGATGAACTTC+CGG - chr4_2:47874444-47874463 Msa0603380:five_prime_UTR 35.0%
ATATCCGGAAGTTCATCATT+AGG + chr4_2:47874451-47874470 None:intergenic 35.0%
CTCTATTATTGAGCTTCGTA+TGG - chr4_2:47874725-47874744 Msa0603380:five_prime_UTR 35.0%
AAAACAACCAAAACAGCACA+GGG + chr4_2:47874772-47874791 None:intergenic 35.0%
!! TGGTTGTTTTGTTGTGATGT+TGG - chr4_2:47874782-47874801 Msa0603380:five_prime_UTR 35.0%
GTTTAATAGTTTGAATCCGG+AGG - chr4_2:47875016-47875035 Msa0603380:five_prime_UTR 35.0%
!! TTTGCTTGATTCGTTGATTC+CGG - chr4_2:47875142-47875161 Msa0603380:intron 35.0%
AAAAACAGAAGCTAGAAACC+CGG + chr4_2:47875164-47875183 None:intergenic 35.0%
!!! GTTTCTAGCTTCTGTTTTTG+TGG - chr4_2:47875165-47875184 Msa0603380:intron 35.0%
! CTATCTGGTGTGTTTAGTTT+GGG - chr4_2:47875312-47875331 Msa0603380:intron 35.0%
TTGTTATCAGTTTGTGCACA+AGG - chr4_2:47875346-47875365 Msa0603380:intron 35.0%
AATGCAACTAAACCTATAGC+AGG + chr4_2:47875484-47875503 None:intergenic 35.0%
GTTAAGACTTGTAAAGTTGG+TGG - chr4_2:47875550-47875569 Msa0603380:five_prime_UTR 35.0%
!! TGCATTGTAGGGGTCATTTT+TGG + chr4_2:47868967-47868986 None:intergenic 40.0%
ACCTACCCTAGAGATTGATT+CGG + chr4_2:47869067-47869086 None:intergenic 40.0%
AGAATTCCTGGTGTTTACTC+TGG - chr4_2:47869207-47869226 Msa0603380:three_prime_UTR 40.0%
!! GATGCTCATGCTACTTTCTA+TGG - chr4_2:47869243-47869262 Msa0603380:three_prime_UTR 40.0%
ATGAGGGCAAAAAGGGAAAT+GGG + chr4_2:47869310-47869329 None:intergenic 40.0%
TATGAGGGCAAAAAGGGAAA+TGG + chr4_2:47869311-47869330 None:intergenic 40.0%
! CCCTCATATTTTCTGGATTG+AGG - chr4_2:47869323-47869342 Msa0603380:three_prime_UTR 40.0%
CCCTCAATCCAGAAAATATG+AGG + chr4_2:47869327-47869346 None:intergenic 40.0%
!!! TGTTTTTAGGAGGAGCATGT+GGG - chr4_2:47869544-47869563 Msa0603380:three_prime_UTR 40.0%
! AGCACTGCTTTGTTCAACAA+TGG - chr4_2:47869615-47869634 Msa0603380:three_prime_UTR 40.0%
AGTGTGCAAATGACAAAGAG+TGG - chr4_2:47869667-47869686 Msa0603380:three_prime_UTR 40.0%
CTTGGTTGAGCAAAATTAGG+AGG + chr4_2:47869741-47869760 None:intergenic 40.0%
!! AACCAAGTGATAATGGTGGT+TGG - chr4_2:47869754-47869773 Msa0603380:three_prime_UTR 40.0%
GGCATAGCAAGATCAAAATG+AGG + chr4_2:47869795-47869814 None:intergenic 40.0%
CAAGTAATGTATGGGGTTTC+CGG - chr4_2:47869896-47869915 Msa0603380:three_prime_UTR 40.0%
AAGTAATGTATGGGGTTTCC+GGG - chr4_2:47869897-47869916 Msa0603380:three_prime_UTR 40.0%
GCATTATTATATGCAGGGCT+TGG + chr4_2:47869932-47869951 None:intergenic 40.0%
TTGACAAAAAAAGCCCCGTT+TGG - chr4_2:47870545-47870564 Msa0603380:intron 40.0%
CTATAAGCTCAAACGCTACT+TGG + chr4_2:47870638-47870657 None:intergenic 40.0%
AATCACAGAGAAAGGAACGA+AGG + chr4_2:47870862-47870881 None:intergenic 40.0%
CGAGCAAAAATCACAGAGAA+AGG + chr4_2:47870870-47870889 None:intergenic 40.0%
! ATTGGTGGATGTGGATTCTT+AGG - chr4_2:47871104-47871123 Msa0603380:CDS 40.0%
TGATGGCCTCTTCAAAATCT+TGG + chr4_2:47871504-47871523 None:intergenic 40.0%
TGAAGAAAGATTGGCGACTT+TGG - chr4_2:47871569-47871588 Msa0603380:intron 40.0%
! ATGGTGAAACTGGATTAGGA+TGG - chr4_2:47871605-47871624 Msa0603380:intron 40.0%
! TGGTGAAACTGGATTAGGAT+GGG - chr4_2:47871606-47871625 Msa0603380:intron 40.0%
CAACTAAGCTTTCCTGTAAC+AGG + chr4_2:47871634-47871653 None:intergenic 40.0%
AGCTTAGTTGTTCAGATGAG+TGG - chr4_2:47871644-47871663 Msa0603380:intron 40.0%
TTAGTTGTTCAGATGAGTGG+TGG - chr4_2:47871647-47871666 Msa0603380:intron 40.0%
TAGTTGTTCAGATGAGTGGT+GGG - chr4_2:47871648-47871667 Msa0603380:intron 40.0%
ATCCTTCGATTGAGGAATAC+TGG - chr4_2:47871819-47871838 Msa0603380:intron 40.0%
ACCAATTCAGGATCCATAGA+GGG + chr4_2:47871893-47871912 None:intergenic 40.0%
AACCAATTCAGGATCCATAG+AGG + chr4_2:47871894-47871913 None:intergenic 40.0%
GGAACATGTTAATGTTGAGG+GGG - chr4_2:47871922-47871941 Msa0603380:intron 40.0%
GAACATGTTAATGTTGAGGG+GGG - chr4_2:47871923-47871942 Msa0603380:intron 40.0%
AACATGTTAATGTTGAGGGG+GGG - chr4_2:47871924-47871943 Msa0603380:intron 40.0%
GCACCTTCAGTATATTCACT+AGG + chr4_2:47872139-47872158 None:intergenic 40.0%
GCATTGGAGATAATGCAATC+TGG - chr4_2:47872313-47872332 Msa0603380:intron 40.0%
TTGGAGATAATGCAATCTGG+TGG - chr4_2:47872316-47872335 Msa0603380:intron 40.0%
AACAGTCATTGCTGTAGCAA+TGG + chr4_2:47872374-47872393 None:intergenic 40.0%
! GATGGTTACCAAAGGTCTTT+TGG - chr4_2:47872402-47872421 Msa0603380:intron 40.0%
! ACCCTTTTCCAAAAGACCTT+TGG + chr4_2:47872413-47872432 None:intergenic 40.0%
TGGAAAAGGGTAGTGAATTG+TGG - chr4_2:47872422-47872441 Msa0603380:intron 40.0%
GATTGAGAATGAAACAAGGC+GGG - chr4_2:47872462-47872481 Msa0603380:five_prime_UTR 40.0%
! GCGGGAGATTTTTCTAAACA+TGG - chr4_2:47872480-47872499 Msa0603380:five_prime_UTR 40.0%
AATATGACTGTAAACTGGGC+AGG - chr4_2:47873046-47873065 Msa0603380:five_prime_UTR 40.0%
GTATGACTTCACTTCAAAGG+GGG - chr4_2:47873310-47873329 Msa0603380:intron 40.0%
AGGCATTCATACATCGAACA+GGG + chr4_2:47873368-47873387 None:intergenic 40.0%
! AAGGCATTCATACATCGAAC+AGG + chr4_2:47873369-47873388 None:intergenic 40.0%
GAGAATGACAGTTGAAGAGA+AGG - chr4_2:47873461-47873480 Msa0603380:intron 40.0%
AATGACAGTTGAAGAGAAGG+TGG - chr4_2:47873464-47873483 Msa0603380:intron 40.0%
ATGACAGTTGAAGAGAAGGT+GGG - chr4_2:47873465-47873484 Msa0603380:intron 40.0%
TTGCTATGGGTGCTTCTAAT+AGG - chr4_2:47873505-47873524 Msa0603380:intron 40.0%
TGCTATGGGTGCTTCTAATA+GGG - chr4_2:47873506-47873525 Msa0603380:intron 40.0%
GCAATTAGTGGTAGAAGTAG+GGG - chr4_2:47873594-47873613 Msa0603380:intron 40.0%
CAGGAATACATGCAGCTATA+TGG + chr4_2:47873832-47873851 None:intergenic 40.0%
TATAGCTGCATGTATTCCTG+AGG - chr4_2:47873832-47873851 Msa0603380:five_prime_UTR 40.0%
ACAACATGCCATGACATTGA+AGG + chr4_2:47873897-47873916 None:intergenic 40.0%
ATAATACCATCTGGTGGCTT+CGG + chr4_2:47874022-47874041 None:intergenic 40.0%
GATATATGGTGCCTTATCCT+AGG - chr4_2:47874155-47874174 Msa0603380:five_prime_UTR 40.0%
GACTGATGATACCTTATCCT+AGG + chr4_2:47874175-47874194 None:intergenic 40.0%
AGGCTTCTTGAGCATTAGTT+GGG + chr4_2:47874216-47874235 None:intergenic 40.0%
AAGGCTTCTTGAGCATTAGT+TGG + chr4_2:47874217-47874236 None:intergenic 40.0%
ATGCTCAAGAAGCCTTTAAC+CGG - chr4_2:47874221-47874240 Msa0603380:five_prime_UTR 40.0%
! TTCTAAGAGATGAATGTGCC+CGG + chr4_2:47874243-47874262 None:intergenic 40.0%
!! TTGGAGTGCTGAAGAAAAGA+TGG - chr4_2:47874281-47874300 Msa0603380:five_prime_UTR 40.0%
TGGGTCTTAACGCTAAATTG+TGG + chr4_2:47874325-47874344 None:intergenic 40.0%
GAACTTCCGGATATTGTTGA+TGG - chr4_2:47874457-47874476 Msa0603380:five_prime_UTR 40.0%
TCAAGGTAGTGAAAGACAAG+AGG - chr4_2:47874483-47874502 Msa0603380:five_prime_UTR 40.0%
CAAGGTAGTGAAAGACAAGA+GGG - chr4_2:47874484-47874503 Msa0603380:five_prime_UTR 40.0%
AAAGACAAGAGGGAAGATCA+GGG - chr4_2:47874494-47874513 Msa0603380:five_prime_UTR 40.0%
GTTACGCATTTCCTTTGTCT+TGG + chr4_2:47874527-47874546 None:intergenic 40.0%
!!! TTTGGATTGATTTTGGCTGC+AGG - chr4_2:47874672-47874691 Msa0603380:five_prime_UTR 40.0%
AACTCGACAGAAAATCCAGA+TGG + chr4_2:47874700-47874719 None:intergenic 40.0%
! TCTGGATTTTCTGTCGAGTT+TGG - chr4_2:47874700-47874719 Msa0603380:five_prime_UTR 40.0%
CAAAACAACCAAAACAGCAC+AGG + chr4_2:47874773-47874792 None:intergenic 40.0%
! GTGATGTTGGTTATCTGTTG+TGG - chr4_2:47874795-47874814 Msa0603380:five_prime_UTR 40.0%
TTGGTTATCTGTTGTGGTAC+TGG - chr4_2:47874801-47874820 Msa0603380:five_prime_UTR 40.0%
! TGGTTTTTCTGCAGCAAGAA+GGG - chr4_2:47874821-47874840 Msa0603380:five_prime_UTR 40.0%
TAATAGTTTGAATCCGGAGG+TGG - chr4_2:47875019-47875038 Msa0603380:five_prime_UTR 40.0%
ATGAGTTACAGGTTATGTCG+TGG - chr4_2:47875054-47875073 Msa0603380:five_prime_UTR 40.0%
! TTTAATGGTGTTGGATCCCA+AGG - chr4_2:47875119-47875138 Msa0603380:intron 40.0%
CAACGAATCAAGCAAACCTT+GGG + chr4_2:47875138-47875157 None:intergenic 40.0%
TCAACGAATCAAGCAAACCT+TGG + chr4_2:47875139-47875158 None:intergenic 40.0%
!! TTGCTTGATTCGTTGATTCC+GGG - chr4_2:47875143-47875162 Msa0603380:intron 40.0%
!!! AGCTTCTGTTTTTGTGGTAC+TGG - chr4_2:47875171-47875190 Msa0603380:intron 40.0%
!!! CTAGGCTTTGTTGCTTGTTT+TGG - chr4_2:47875240-47875259 Msa0603380:intron 40.0%
CCAAACTAAACACACCAGAT+AGG + chr4_2:47875314-47875333 None:intergenic 40.0%
CCTATCTGGTGTGTTTAGTT+TGG - chr4_2:47875311-47875330 Msa0603380:intron 40.0%
ACTAAACCTATAGCAGGACA+AGG + chr4_2:47875478-47875497 None:intergenic 40.0%
AGGTTTAGTTGCATTTCCAC+TGG - chr4_2:47875489-47875508 Msa0603380:five_prime_UTR 40.0%
TGAATGCAGTAGCATCTATG+GGG + chr4_2:47875595-47875614 None:intergenic 40.0%
CTGAATGCAGTAGCATCTAT+GGG + chr4_2:47875596-47875615 None:intergenic 40.0%
!! GTGGGAGTACTTATGGAGTT+GGG + chr4_2:47869008-47869027 None:intergenic 45.0%
!! AGTGGGAGTACTTATGGAGT+TGG + chr4_2:47869009-47869028 None:intergenic 45.0%
!! TGGAAGAGTGGGAGTACTTA+TGG + chr4_2:47869015-47869034 None:intergenic 45.0%
! TTCGGAGGTGAGAGTTGATT+GGG + chr4_2:47869049-47869068 None:intergenic 45.0%
! ATTCGGAGGTGAGAGTTGAT+TGG + chr4_2:47869050-47869069 None:intergenic 45.0%
TCACCTCCGAATCAATCTCT+AGG - chr4_2:47869058-47869077 Msa0603380:three_prime_UTR 45.0%
CACCTCCGAATCAATCTCTA+GGG - chr4_2:47869059-47869078 Msa0603380:three_prime_UTR 45.0%
!! TACCCTAGAGATTGATTCGG+AGG + chr4_2:47869064-47869083 None:intergenic 45.0%
!! TCCGAATCAATCTCTAGGGT+AGG - chr4_2:47869063-47869082 Msa0603380:three_prime_UTR 45.0%
ATTCCTGGTGTTTACTCTGG+TGG - chr4_2:47869210-47869229 Msa0603380:three_prime_UTR 45.0%
GTGTTTACTCTGGTGGTCAA+TGG - chr4_2:47869217-47869236 Msa0603380:three_prime_UTR 45.0%
!! GCTCATGCTACTTTCTATGG+TGG - chr4_2:47869246-47869265 Msa0603380:three_prime_UTR 45.0%
!! TATGGTGGATCTGATGCTTC+TGG - chr4_2:47869261-47869280 Msa0603380:three_prime_UTR 45.0%
!!! GTGTTTTTAGGAGGAGCATG+TGG - chr4_2:47869543-47869562 Msa0603380:three_prime_UTR 45.0%
!! GACAAAGAGTGGTGTCATTC+TGG - chr4_2:47869678-47869697 Msa0603380:three_prime_UTR 45.0%
!! GCTCAACCAAGTGATAATGG+TGG - chr4_2:47869750-47869769 Msa0603380:three_prime_UTR 45.0%
CACCAACCACCATTATCACT+TGG + chr4_2:47869759-47869778 None:intergenic 45.0%
GATCAAAATGAGGACGAGGA+GGG + chr4_2:47869785-47869804 None:intergenic 45.0%
AGATCAAAATGAGGACGAGG+AGG + chr4_2:47869786-47869805 None:intergenic 45.0%
GCAAGATCAAAATGAGGACG+AGG + chr4_2:47869789-47869808 None:intergenic 45.0%
! AAGATTGCTGAGTATCGTGC+TGG - chr4_2:47869825-47869844 Msa0603380:three_prime_UTR 45.0%
AGTAATGTATGGGGTTTCCG+GGG - chr4_2:47869898-47869917 Msa0603380:three_prime_UTR 45.0%
AGTCCAGTCTCATCACAGTT+AGG - chr4_2:47870462-47870481 Msa0603380:CDS 45.0%
! CATCACAGTTAGGCACTGTT+TGG - chr4_2:47870472-47870491 Msa0603380:CDS 45.0%
GAAACGAATCAGTGGAACGA+CGG + chr4_2:47870900-47870919 None:intergenic 45.0%
GAGAAATGAAAACCTGGGTG+TGG + chr4_2:47870922-47870941 None:intergenic 45.0%
! TGAGGGAACTTTTCGGTTGA+TGG + chr4_2:47871521-47871540 None:intergenic 45.0%
TTAGGATGGGATCCTGTTAC+AGG - chr4_2:47871619-47871638 Msa0603380:intron 45.0%
TTGTCTGTAGGAGAAACCTG+AGG - chr4_2:47871769-47871788 Msa0603380:intron 45.0%
CTCCAGTATTCCTCAATCGA+AGG + chr4_2:47871824-47871843 None:intergenic 45.0%
!! AGAGTTTGTTGCACCCTCTA+TGG - chr4_2:47871877-47871896 Msa0603380:intron 45.0%
ACCCTCTATGGATCCTGAAT+TGG - chr4_2:47871889-47871908 Msa0603380:intron 45.0%
! TCCTGAATTGGTTCAACCTG+TGG - chr4_2:47871901-47871920 Msa0603380:intron 45.0%
! TCCACAGGTTGAACCAATTC+AGG + chr4_2:47871905-47871924 None:intergenic 45.0%
ACATGTTAATGTTGAGGGGG+GGG - chr4_2:47871925-47871944 Msa0603380:intron 45.0%
TTGTGTACCTCCAAGACCTT+GGG + chr4_2:47872113-47872132 None:intergenic 45.0%
CGTAAAAGAAAACGCTCAGG+AGG - chr4_2:47872238-47872257 Msa0603380:intron 45.0%
! TGGGGGATGATGATGATTCT+AGG - chr4_2:47872500-47872519 Msa0603380:five_prime_UTR 45.0%
CACTCTCTCGGATTCCTTAT+TGG + chr4_2:47872995-47873014 None:intergenic 45.0%
CATTCATACATCGAACAGGG+TGG + chr4_2:47873365-47873384 None:intergenic 45.0%
!! AGAGAGCGCTTTCAACATTC+TGG - chr4_2:47873534-47873553 Msa0603380:intron 45.0%
!! GAGAGCGCTTTCAACATTCT+GGG - chr4_2:47873535-47873554 Msa0603380:intron 45.0%
! AGAGCGCTTTCAACATTCTG+GGG - chr4_2:47873536-47873555 Msa0603380:intron 45.0%
!! GCGGTACATGCCTTATTTCA+AGG - chr4_2:47873698-47873717 Msa0603380:intron 45.0%
GCGGATCAAATGCGTTATAG+AGG - chr4_2:47873854-47873873 Msa0603380:five_prime_UTR 45.0%
AATCCCCACCTTCAATGTCA+TGG - chr4_2:47873886-47873905 Msa0603380:five_prime_UTR 45.0%
ATGCCATGACATTGAAGGTG+GGG + chr4_2:47873892-47873911 None:intergenic 45.0%
CATGCCATGACATTGAAGGT+GGG + chr4_2:47873893-47873912 None:intergenic 45.0%
ACATGCCATGACATTGAAGG+TGG + chr4_2:47873894-47873913 None:intergenic 45.0%
TGGTGCCTTATCCTAGGATA+AGG - chr4_2:47874161-47874180 Msa0603380:five_prime_UTR 45.0%
GCTTCTTGAGCATTAGTTGG+GGG + chr4_2:47874214-47874233 None:intergenic 45.0%
GGCTTCTTGAGCATTAGTTG+GGG + chr4_2:47874215-47874234 None:intergenic 45.0%
TGCTCAAGAAGCCTTTAACC+GGG - chr4_2:47874222-47874241 Msa0603380:five_prime_UTR 45.0%
AGATGAATGTGCCCGGTTAA+AGG + chr4_2:47874236-47874255 None:intergenic 45.0%
GAAAGACAAGAGGGAAGATC+AGG - chr4_2:47874493-47874512 Msa0603380:five_prime_UTR 45.0%
AGGGAGATCAACCAAGACAA+AGG - chr4_2:47874513-47874532 Msa0603380:five_prime_UTR 45.0%
!!! TTTTCCTCCCTGTGCTGTTT+TGG - chr4_2:47874762-47874781 Msa0603380:five_prime_UTR 45.0%
!! CTGGTTTTTCTGCAGCAAGA+AGG - chr4_2:47874820-47874839 Msa0603380:five_prime_UTR 45.0%
TTTCTGCAGCAAGAAGGGTT+TGG - chr4_2:47874826-47874845 Msa0603380:five_prime_UTR 45.0%
TTTGGCAAGGTATGACAGAG+TGG - chr4_2:47874844-47874863 Msa0603380:five_prime_UTR 45.0%
!!! TCCGATTGTTTTTGCCCCTT+GGG - chr4_2:47874890-47874909 Msa0603380:five_prime_UTR 45.0%
TCCCAAGGGGCAAAAACAAT+CGG + chr4_2:47874894-47874913 None:intergenic 45.0%
CTGTAACTCATCCACCAACT+CGG + chr4_2:47875045-47875064 None:intergenic 45.0%
!! GGTACTGGTATCTCAGTCTT+AGG - chr4_2:47875186-47875205 Msa0603380:intron 45.0%
!!! GGCTTTGTTGCTTGTTTTGG+TGG - chr4_2:47875243-47875262 Msa0603380:intron 45.0%
!! GGTGTGGTTTGGACTGTTTT+AGG - chr4_2:47875402-47875421 Msa0603380:five_prime_UTR 45.0%
!! GTGGTTTGGACTGTTTTAGG+TGG - chr4_2:47875405-47875424 Msa0603380:five_prime_UTR 45.0%
! GGCTTGACAGTTCTGTTTTG+TGG - chr4_2:47875426-47875445 Msa0603380:five_prime_UTR 45.0%
! TGACAGTTCTGTTTTGTGGC+TGG - chr4_2:47875430-47875449 Msa0603380:five_prime_UTR 45.0%
!! GGCAGCTTGTTTTTCTGTGT+TGG - chr4_2:47875451-47875470 Msa0603380:five_prime_UTR 45.0%
GCTGAATGCAGTAGCATCTA+TGG + chr4_2:47875597-47875616 None:intergenic 45.0%
!!! TCATTTTTTTATTATTTTTT+TGG - chr4_2:47869999-47870018 Msa0603380:three_prime_UTR 5.0%
!!! ATTATTTTTAGATTTTATTT+TGG + chr4_2:47870298-47870317 None:intergenic 5.0%
! CTTATGGAGTTGGGAAGTGC+TGG + chr4_2:47868999-47869018 None:intergenic 50.0%
! CAGTGAGAGTGTGGAAGAGT+GGG + chr4_2:47869026-47869045 None:intergenic 50.0%
TTGATTGGGCAGTGAGAGTG+TGG + chr4_2:47869035-47869054 None:intergenic 50.0%
TGACCACCAGAGTAAACACC+AGG + chr4_2:47869216-47869235 None:intergenic 50.0%
ATCTGATGCTTCTGGCACCA+TGG - chr4_2:47869269-47869288 Msa0603380:three_prime_UTR 50.0%
TCTGATGCTTCTGGCACCAT+GGG - chr4_2:47869270-47869289 Msa0603380:three_prime_UTR 50.0%
! TTAGGAGGAGCATGTGGGTA+CGG - chr4_2:47869549-47869568 Msa0603380:three_prime_UTR 50.0%
CTAACCTGCGGTAAGCAACA+GGG + chr4_2:47869857-47869876 None:intergenic 50.0%
ACTAACCTGCGGTAAGCAAC+AGG + chr4_2:47869858-47869877 None:intergenic 50.0%
GTGCCTAACTGTGATGAGAC+TGG + chr4_2:47870468-47870487 None:intergenic 50.0%
TGGGTGTGGAAACGAATCAG+TGG + chr4_2:47870908-47870927 None:intergenic 50.0%
!! ACTGATTCGTTTCCACACCC+AGG - chr4_2:47870907-47870926 Msa0603380:intron 50.0%
GTCGGTAGATCCTTCGATTG+AGG - chr4_2:47871811-47871830 Msa0603380:intron 50.0%
GGGGGGATAAAGAAAGTGGT+GGG - chr4_2:47871942-47871961 Msa0603380:intron 50.0%
GGGGGATAAAGAAAGTGGTG+GGG - chr4_2:47871943-47871962 Msa0603380:intron 50.0%
! CAGACGACATGCTTCTGAAG+TGG - chr4_2:47872015-47872034 Msa0603380:intron 50.0%
AAGACCTTGGGTAGGCACAT+GGG + chr4_2:47872101-47872120 None:intergenic 50.0%
CTTGTGTACCTCCAAGACCT+TGG + chr4_2:47872114-47872133 None:intergenic 50.0%
! ACTGAAGGTGCACAAGTGAC+TGG - chr4_2:47872148-47872167 Msa0603380:intron 50.0%
! TCAGGAGGTGCAACAAAGCT+AGG - chr4_2:47872253-47872272 Msa0603380:intron 50.0%
TGTGCTCAACATCACACCGA+AGG - chr4_2:47873115-47873134 Msa0603380:five_prime_UTR 50.0%
CACTTCAAAGGGGGCAAGAT+TGG - chr4_2:47873319-47873338 Msa0603380:intron 50.0%
TGGTAGAAGTAGGGGCTACA+GGG - chr4_2:47873602-47873621 Msa0603380:intron 50.0%
AGCTGCATGTATTCCTGAGG+CGG - chr4_2:47873835-47873854 Msa0603380:five_prime_UTR 50.0%
TAACGCATTTGATCCGCCTC+AGG + chr4_2:47873851-47873870 None:intergenic 50.0%
GGCTTCGGAAAGTTTAACGC+CGG + chr4_2:47874007-47874026 None:intergenic 50.0%
AACTTTCCGAAGCCACCAGA+TGG - chr4_2:47874013-47874032 Msa0603380:five_prime_UTR 50.0%
CTTCGTATGGTCTGTTCTGC+AGG - chr4_2:47874738-47874757 Msa0603380:five_prime_UTR 50.0%
ACAACCAAAACAGCACAGGG+AGG + chr4_2:47874769-47874788 None:intergenic 50.0%
GCAAGGTATGACAGAGTGGT+GGG - chr4_2:47874848-47874867 Msa0603380:five_prime_UTR 50.0%
CAAGGGGCAAAAACAATCGG+AGG + chr4_2:47874891-47874910 None:intergenic 50.0%
!!! CTCCGATTGTTTTTGCCCCT+TGG - chr4_2:47874889-47874908 Msa0603380:five_prime_UTR 50.0%
TTACTCCAGCACACTCCCAA+GGG + chr4_2:47874908-47874927 None:intergenic 50.0%
ATTACTCCAGCACACTCCCA+AGG + chr4_2:47874909-47874928 None:intergenic 50.0%
! TTGGGAGTGTGCTGGAGTAA+TGG - chr4_2:47874908-47874927 Msa0603380:five_prime_UTR 50.0%
!! CGAGTTGGTGGATGAGTTAC+AGG - chr4_2:47875043-47875062 Msa0603380:five_prime_UTR 50.0%
TACAGGTTATGTCGTGGCGT+TGG - chr4_2:47875060-47875079 Msa0603380:five_prime_UTR 50.0%
ACAGGTTATGTCGTGGCGTT+GGG - chr4_2:47875061-47875080 Msa0603380:five_prime_UTR 50.0%
!! GTGTGTTTGCGGTTTGGTCT+AGG - chr4_2:47875222-47875241 Msa0603380:intron 50.0%
! TTTGGTGGCCTGTTTGTGTG+AGG - chr4_2:47875258-47875277 Msa0603380:intron 50.0%
!! GTGTGTTTAGTTTGGGCTGC+TGG - chr4_2:47875319-47875338 Msa0603380:intron 50.0%
GTTGGTCCTTGTCCTGCTAT+AGG - chr4_2:47875469-47875488 Msa0603380:five_prime_UTR 50.0%
! GCAGTGAGAGTGTGGAAGAG+TGG + chr4_2:47869027-47869046 None:intergenic 55.0%
! TTGTCCCTGTTGCTTACCGC+AGG - chr4_2:47869850-47869869 Msa0603380:three_prime_UTR 55.0%
GAGGGGGGGGATAAAGAAAG+TGG - chr4_2:47871938-47871957 Msa0603380:intron 55.0%
GGGGGGGATAAAGAAAGTGG+TGG - chr4_2:47871941-47871960 Msa0603380:intron 55.0%
CAAGACCTTGGGTAGGCACA+TGG + chr4_2:47872102-47872121 None:intergenic 55.0%
CATGTGCCTACCCAAGGTCT+TGG - chr4_2:47872100-47872119 Msa0603380:intron 55.0%
GTACCTCCAAGACCTTGGGT+AGG + chr4_2:47872109-47872128 None:intergenic 55.0%
! GGTGCACAAGTGACTGGTCA+AGG - chr4_2:47872154-47872173 Msa0603380:intron 55.0%
! GCACAAGTGACTGGTCAAGG+TGG - chr4_2:47872157-47872176 Msa0603380:intron 55.0%
! CAAGTGACTGGTCAAGGTGG+AGG - chr4_2:47872160-47872179 Msa0603380:intron 55.0%
! GGAGGTGCAACAAAGCTAGG+TGG - chr4_2:47872256-47872275 Msa0603380:intron 55.0%
GTGGTAGAAGTAGGGGCTAC+AGG - chr4_2:47873601-47873620 Msa0603380:intron 55.0%
GGTAGAAGTAGGGGCTACAG+GGG - chr4_2:47873603-47873622 Msa0603380:intron 55.0%
!! TTTTGGCTGCAGGCTCCATC+TGG - chr4_2:47874682-47874701 Msa0603380:five_prime_UTR 55.0%
GCAGCAAGAAGGGTTTGGCA+AGG - chr4_2:47874831-47874850 Msa0603380:five_prime_UTR 55.0%
GGCAAGGTATGACAGAGTGG+TGG - chr4_2:47874847-47874866 Msa0603380:five_prime_UTR 55.0%
! GTATGACAGAGTGGTGGGAG+AGG - chr4_2:47874853-47874872 Msa0603380:five_prime_UTR 55.0%
TACTCCAGCACACTCCCAAG+GGG + chr4_2:47874907-47874926 None:intergenic 55.0%
TGTGCTGGAGTAATGGCGAG+AGG - chr4_2:47874915-47874934 Msa0603380:five_prime_UTR 55.0%
! TTGTGTGGCACACGGCGTTT+TGG - chr4_2:47874966-47874985 Msa0603380:five_prime_UTR 55.0%
! TGTGTGGCACACGGCGTTTT+GGG - chr4_2:47874967-47874986 Msa0603380:five_prime_UTR 55.0%
CTCAGTCTTAGGCTGCTGTG+CGG - chr4_2:47875197-47875216 Msa0603380:intron 55.0%
GCTGTGCGGTTGTGTGTTTG+CGG - chr4_2:47875211-47875230 Msa0603380:intron 55.0%
GCGGTTGTGTGTTTGCGGTT+TGG - chr4_2:47875216-47875235 Msa0603380:intron 55.0%
CAGCACCACCTCACACAAAC+AGG + chr4_2:47875269-47875288 None:intergenic 55.0%
CAAACCACACCAGCAGGCTA+CGG + chr4_2:47875393-47875412 None:intergenic 55.0%
ACAGTCCAAACCACACCAGC+AGG + chr4_2:47875399-47875418 None:intergenic 55.0%
GGTACCCATGTGCCTACCCA+AGG - chr4_2:47872094-47872113 Msa0603380:intron 60.0%
GTGCCTACCCAAGGTCTTGG+AGG - chr4_2:47872103-47872122 Msa0603380:intron 60.0%
! TTTGCCCCTTGGGAGTGTGC+TGG - chr4_2:47874900-47874919 Msa0603380:five_prime_UTR 60.0%
GTAAGGGGCTCCGTCTTGTG+TGG - chr4_2:47874951-47874970 Msa0603380:five_prime_UTR 60.0%
GCTCCGTCTTGTGTGGCACA+CGG - chr4_2:47874958-47874977 Msa0603380:five_prime_UTR 60.0%
ACGCCGTGTGCCACACAAGA+CGG + chr4_2:47874964-47874983 None:intergenic 60.0%
! TATGTCGTGGCGTTGGGCGT+TGG - chr4_2:47875067-47875086 Msa0603380:five_prime_UTR 60.0%
GGTGGCCTGTTTGTGTGAGG+TGG - chr4_2:47875261-47875280 Msa0603380:intron 60.0%
!! AGGTGGTGCTGCTGTTAGCG+TGG - chr4_2:47875278-47875297 Msa0603380:intron 60.0%
!! GGTGGTGCTGCTGTTAGCGT+GGG - chr4_2:47875279-47875298 Msa0603380:intron 60.0%
!! GTGGTGCTGCTGTTAGCGTG+GGG - chr4_2:47875280-47875299 Msa0603380:intron 60.0%
GCTGTTAGCGTGGGGCTGTT+TGG - chr4_2:47875288-47875307 Msa0603380:intron 60.0%
GTGGGGCTGTTTGGCCTATC+TGG - chr4_2:47875297-47875316 Msa0603380:intron 60.0%
CGTAGCCTGCTGGTGTGGTT+TGG - chr4_2:47875391-47875410 Msa0603380:five_prime_UTR 60.0%
GAATCCGGAGGTGGCCGAGT+TGG - chr4_2:47875028-47875047 Msa0603380:five_prime_UTR 65.0%
TCCACCAACTCGGCCACCTC+CGG + chr4_2:47875035-47875054 None:intergenic 65.0%
TTGCTGCTGCCGTAGCCTGC+TGG - chr4_2:47875381-47875400 Msa0603380:five_prime_UTR 65.0%
AGGGCTTGGGGTTCGAGCCC+CGG + chr4_2:47869918-47869937 None:intergenic 70.0%
! TCCGGAGGTGGCCGAGTTGG+TGG - chr4_2:47875031-47875050 Msa0603380:five_prime_UTR 70.0%
GCTGCCGTAGCCTGCTGGTG+TGG - chr4_2:47875386-47875405 Msa0603380:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 47868957 47875706 47868957 ID=Msa0603380;Name=Msa0603380
chr4_2 mRNA 47868957 47875706 47868957 ID=Msa0603380-mRNA-1;Parent=Msa0603380;Name=Msa0603380-mRNA-1;_AED=0.14;_eAED=0.14;_QI=2540|1|1|1|0.66|0.57|7|1124|408
chr4_2 exon 47868957 47870550 47868957 ID=Msa0603380-mRNA-1:exon:10968;Parent=Msa0603380-mRNA-1
chr4_2 exon 47870629 47870860 47870629 ID=Msa0603380-mRNA-1:exon:10967;Parent=Msa0603380-mRNA-1
chr4_2 exon 47870944 47871538 47870944 ID=Msa0603380-mRNA-1:exon:10966;Parent=Msa0603380-mRNA-1
chr4_2 exon 47872453 47872884 47872453 ID=Msa0603380-mRNA-1:exon:10965;Parent=Msa0603380-mRNA-1
chr4_2 exon 47872979 47873305 47872979 ID=Msa0603380-mRNA-1:exon:10964;Parent=Msa0603380-mRNA-1
chr4_2 exon 47873735 47875110 47873735 ID=Msa0603380-mRNA-1:exon:10963;Parent=Msa0603380-mRNA-1
chr4_2 exon 47875372 47875706 47875372 ID=Msa0603380-mRNA-1:exon:10962;Parent=Msa0603380-mRNA-1
chr4_2 five_prime_UTR 47875372 47875706 47875372 ID=Msa0603380-mRNA-1:five_prime_utr;Parent=Msa0603380-mRNA-1
chr4_2 five_prime_UTR 47873735 47875110 47873735 ID=Msa0603380-mRNA-1:five_prime_utr;Parent=Msa0603380-mRNA-1
chr4_2 five_prime_UTR 47872979 47873305 47872979 ID=Msa0603380-mRNA-1:five_prime_utr;Parent=Msa0603380-mRNA-1
chr4_2 five_prime_UTR 47872453 47872884 47872453 ID=Msa0603380-mRNA-1:five_prime_utr;Parent=Msa0603380-mRNA-1
chr4_2 five_prime_UTR 47871469 47871538 47871469 ID=Msa0603380-mRNA-1:five_prime_utr;Parent=Msa0603380-mRNA-1
chr4_2 CDS 47870944 47871468 47870944 ID=Msa0603380-mRNA-1:cds;Parent=Msa0603380-mRNA-1
chr4_2 CDS 47870629 47870860 47870629 ID=Msa0603380-mRNA-1:cds;Parent=Msa0603380-mRNA-1
chr4_2 CDS 47870081 47870550 47870081 ID=Msa0603380-mRNA-1:cds;Parent=Msa0603380-mRNA-1
chr4_2 three_prime_UTR 47868957 47870080 47868957 ID=Msa0603380-mRNA-1:three_prime_utr;Parent=Msa0603380-mRNA-1
Gene Sequence

>Msa0603380

ATGGATAATGAAAGAGAAAATAAGAGAAGAAAGTATGCACTTTATTGGAATATAAGATCAAGTGCAATAAGTGCAATTGCTACATATTACTATAAATATGTCTATAAAGAACCATGTATGACTTCACTTCAAAGGGGGCAAGATTGGATGAATGAGATATTGAATGGCCACCCTGTTCGATGTATGAATGCCTTTAGAATGGACCCAACTTTATTTAAACAGTTGTGTGGTGATTTGCAATCAAAATATGGATTGCAACCAAGTAAGAGAATGACAGTTGAAGAGAAGGTGGGCATATTTGTGTATACACTTGCTATGGGTGCTTCTAATAGGGATGTTAGAGAGCGCTTTCAACATTCTGGGGAGACTATTAGCAGAGCATTTCATGAAGTTTTAGAAGCAATTAGTGGTAGAAGTAGGGGCTACAGGGGTCTAGCACGTGATATCATAAGACCAAAGGATCCAACTTTTCAATTTATACCGCCGCATATTTCTAATGATGAGCGGTACATGCCTTATTTCAAGGATTGTATTGGATGTATTGATGGTACCCATATAGCTGCATGTATTCCTGAGGCGGATCAAATGCGTTATAGAGGTAGAAAAGGAATCCCCACCTTCAATGTCATGGCATGTTGTGATTTTGATATGTGTTTCACATTTATATCAGTTGGATGGGAGGGATCAGCGCATGACACACGTGTTTTTCTTCATGCAATTAACACACCGGCGTTAAACTTTCCGAAGCCACCAGATGGTAGATATTATTTGGTTGATAAAGGATATCCTGATAAAGAGGGATATATGGTGCCTTATCCTAGGATAAGGTATCATCAGTCTCAGTTCGAACACGAACCCCCAACTAATGCTCAAGAAGCCTTTAACCGGGCACATTCATCTCTTAGAAGTTGTATAGAAAGATCATTTGGAGTGCTGAAGAAAAGATGGAAGATACTAAACAAAATGCCACAATTTAGCGTTAAGACCCAAATTGATGTTATTATAGCTGCATTTGCGTTGCATAACTATATTCGCATCAACTCACAAGATGATGCAATGTTTACTATTCTTGAGCGACATCCAAATTACATACCTAATGATGAACTTCCGGATATTGTTGATGGTTATCAAGGTAGTGAAAGACAAGAGGGAAGATCAGGGAGATCAACCAAGACAAAGGAAATGCGTAACAATATTGCTGCTTTATTATGGAATAATAGGCGATAG
Protein sequence

>Msa0603380

MDNERENKRRKYALYWNIRSSAISAIATYYYKYVYKEPCMTSLQRGQDWMNEILNGHPVRCMNAFRMDPTLFKQLCGDLQSKYGLQPSKRMTVEEKVGIFVYTLAMGASNRDVRERFQHSGETISRAFHEVLEAISGRSRGYRGLARDIIRPKDPTFQFIPPHISNDERYMPYFKDCIGCIDGTHIAACIPEADQMRYRGRKGIPTFNVMACCDFDMCFTFISVGWEGSAHDTRVFLHAINTPALNFPKPPDGRYYLVDKGYPDKEGYMVPYPRIRYHQSQFEHEPPTNAQEAFNRAHSSLRSCIERSFGVLKKRWKILNKMPQFSVKTQIDVIIAAFALHNYIRINSQDDAMFTILERHPNYIPNDELPDIVDGYQGSERQEGRSGRSTKTKEMRNNIAALLWNNRR*