Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684220 | XP_013456138.1 | 98.450 | 258 | 4 | 0 | 1 | 258 | 1 | 258 | 0.0 | 525 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684220 | sp|O48818|EXPA4_ARATH | 83.794 | 253 | 41 | 0 | 6 | 258 | 5 | 257 | 3.49e-162 | 452 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684220 | A0A072UK92 | 98.450 | 258 | 4 | 0 | 1 | 258 | 1 | 258 | 0.0 | 525 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0019900 | Msa0684220 | 0.833986 | 3.891532e-56 | -8.615850e-47 |
| Msa0025160 | Msa0684220 | 0.807399 | 5.151598e-50 | -8.615850e-47 |
| Msa0034210 | Msa0684220 | 0.802496 | 5.458011e-49 | -8.615850e-47 |
| Msa0050660 | Msa0684220 | 0.821827 | 3.282448e-53 | -8.615850e-47 |
| Msa0050700 | Msa0684220 | 0.822433 | 2.375042e-53 | -8.615850e-47 |
| Msa0050790 | Msa0684220 | 0.824090 | 9.745844e-54 | -8.615850e-47 |
| Msa0090400 | Msa0684220 | 0.814593 | 1.423955e-51 | -8.615850e-47 |
| Msa0603380 | Msa0684220 | 0.806007 | 1.013844e-49 | -8.615850e-47 |
| Msa0644410 | Msa0684220 | 0.884942 | 1.245450e-71 | -8.615850e-47 |
| Msa0670100 | Msa0684220 | 0.802743 | 4.852781e-49 | -8.615850e-47 |
| Msa0675330 | Msa0684220 | 0.866880 | 2.062709e-65 | -8.615850e-47 |
| Msa0684220 | Msa0725750 | 0.800790 | 1.221527e-48 | -8.615850e-47 |
| Msa0684220 | Msa0761670 | 0.811345 | 7.332794e-51 | -8.615850e-47 |
| Msa0684220 | Msa0859290 | 0.800685 | 1.283620e-48 | -8.615850e-47 |
| Msa0684220 | Msa0966320 | 0.800263 | 1.564787e-48 | -8.615850e-47 |
| Msa0684220 | Msa1029530 | 0.800596 | 1.338122e-48 | -8.615850e-47 |
| Msa0684220 | Msa1042160 | 0.826317 | 2.898788e-54 | -8.615850e-47 |
| Msa0684220 | Msa1042190 | 0.830029 | 3.696047e-55 | -8.615850e-47 |
| Msa0684220 | Msa1123210 | 0.839486 | 1.539498e-57 | -8.615850e-47 |
| Msa0684220 | Msa1167470 | 0.816737 | 4.739319e-52 | -8.615850e-47 |
| Msa0684220 | Msa1224930 | 0.801850 | 7.413242e-49 | -8.615850e-47 |
| Msa0684220 | Msa1315160 | 0.808651 | 2.788758e-50 | -8.615850e-47 |
| Msa0684220 | Msa1321340 | 0.807858 | 4.116554e-50 | -8.615850e-47 |
| Msa0684220 | Msa1343170 | 0.810614 | 1.055952e-50 | -8.615850e-47 |
| Msa0684220 | Msa1411790 | 0.807989 | 3.860730e-50 | -8.615850e-47 |
| Msa0684220 | Msa1415540 | 0.856943 | 2.284472e-62 | -8.615850e-47 |
| Msa0684220 | Msa1431480 | 0.824433 | 8.091694e-54 | -8.615850e-47 |
| Msa0684220 | Msa1440630 | 0.823893 | 1.083987e-53 | -8.615850e-47 |
| Msa0121330 | Msa0684220 | 0.825935 | 3.572775e-54 | -8.615850e-47 |
| Msa0128310 | Msa0684220 | 0.815773 | 7.786264e-52 | -8.615850e-47 |
| Msa0137880 | Msa0684220 | 0.826184 | 3.117815e-54 | -8.615850e-47 |
| Msa0140280 | Msa0684220 | 0.818809 | 1.615165e-52 | -8.615850e-47 |
| Msa0158860 | Msa0684220 | 0.827374 | 1.620683e-54 | -8.615850e-47 |
| Msa0161930 | Msa0684220 | 0.809370 | 1.956839e-50 | -8.615850e-47 |
| Msa0174440 | Msa0684220 | 0.821118 | 4.784720e-53 | -8.615850e-47 |
| Msa0182190 | Msa0684220 | 0.810131 | 1.342310e-50 | -8.615850e-47 |
| Msa0182240 | Msa0684220 | 0.813063 | 3.094513e-51 | -8.615850e-47 |
| Msa0200050 | Msa0684220 | 0.821621 | 3.663670e-53 | -8.615850e-47 |
| Msa0367690 | Msa0684220 | 0.804546 | 2.050565e-49 | -8.615850e-47 |
| Msa0380670 | Msa0684220 | 0.811191 | 7.921653e-51 | -8.615850e-47 |
| Msa0415450 | Msa0684220 | 0.800207 | 1.605784e-48 | -8.615850e-47 |
| Msa0419540 | Msa0684220 | 0.813796 | 2.134834e-51 | -8.615850e-47 |
| Msa0430300 | Msa0684220 | 0.813852 | 2.075555e-51 | -8.615850e-47 |
| Msa0447750 | Msa0684220 | 0.808061 | 3.727250e-50 | -8.615850e-47 |
| Msa0472950 | Msa0684220 | 0.822610 | 2.160963e-53 | -8.615850e-47 |
| Msa0267110 | Msa0684220 | 0.803679 | 3.107584e-49 | -8.615850e-47 |
| Msa0298470 | Msa0684220 | 0.805698 | 1.177467e-49 | -8.615850e-47 |
| Msa0517250 | Msa0684220 | 0.801386 | 9.226406e-49 | -8.615850e-47 |
| Msa0520990 | Msa0684220 | 0.803611 | 3.209117e-49 | -8.615850e-47 |
| Msa0528570 | Msa0684220 | 0.852832 | 3.562694e-61 | -8.615850e-47 |
| Msa0541300 | Msa0684220 | 0.858392 | 8.502490e-63 | -8.615850e-47 |
| Msa0541310 | Msa0684220 | 0.856927 | 2.309995e-62 | -8.615850e-47 |
| Msa0548470 | Msa0684220 | 0.853063 | 3.060983e-61 | -8.615850e-47 |
| Msa0571290 | Msa0684220 | 0.805055 | 1.605381e-49 | -8.615850e-47 |
| Msa0585020 | Msa0684220 | 0.863533 | 2.325429e-64 | -8.615850e-47 |
| Msa0597270 | Msa0684220 | 0.865052 | 7.806825e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684220 | MtrunA17_Chr4g0031621 | 98.450 | 258 | 4 | 0 | 1 | 258 | 1 | 258 | 0.0 | 525 |
| Msa0684220 | MtrunA17_Chr2g0328261 | 87.209 | 258 | 33 | 0 | 1 | 258 | 3 | 260 | 5.77e-174 | 479 |
| Msa0684220 | MtrunA17_Chr5g0435311 | 81.746 | 252 | 42 | 1 | 7 | 258 | 61 | 308 | 9.21e-161 | 448 |
| Msa0684220 | MtrunA17_Chr7g0238681 | 82.745 | 255 | 43 | 1 | 5 | 258 | 4 | 258 | 3.14e-160 | 444 |
| Msa0684220 | MtrunA17_Chr5g0417701 | 71.616 | 229 | 63 | 1 | 29 | 257 | 22 | 248 | 1.54e-124 | 354 |
| Msa0684220 | MtrunA17_Chr4g0042521 | 66.000 | 250 | 78 | 3 | 5 | 253 | 1 | 244 | 1.50e-122 | 349 |
| Msa0684220 | MtrunA17_Chr3g0128801 | 64.314 | 255 | 86 | 3 | 5 | 256 | 1 | 253 | 2.30e-122 | 348 |
| Msa0684220 | MtrunA17_Chr3g0128791 | 64.173 | 254 | 86 | 3 | 5 | 256 | 3 | 253 | 2.73e-121 | 346 |
| Msa0684220 | MtrunA17_Chr3g0092071 | 70.222 | 225 | 65 | 1 | 32 | 256 | 25 | 247 | 7.68e-120 | 342 |
| Msa0684220 | MtrunA17_Chr5g0432611 | 63.780 | 254 | 87 | 3 | 5 | 256 | 1 | 251 | 7.83e-120 | 342 |
| Msa0684220 | MtrunA17_Chr3g0107291 | 63.281 | 256 | 92 | 1 | 1 | 256 | 7 | 260 | 1.05e-116 | 334 |
| Msa0684220 | MtrunA17_Chr3g0107311 | 63.424 | 257 | 90 | 3 | 1 | 256 | 1 | 254 | 5.45e-116 | 332 |
| Msa0684220 | MtrunA17_Chr7g0217661 | 63.265 | 245 | 80 | 2 | 12 | 256 | 6 | 240 | 2.65e-114 | 328 |
| Msa0684220 | MtrunA17_Chr1g0193631 | 61.157 | 242 | 86 | 4 | 16 | 254 | 18 | 254 | 9.70e-107 | 309 |
| Msa0684220 | MtrunA17_Chr7g0271001 | 57.312 | 253 | 100 | 4 | 2 | 251 | 1 | 248 | 1.27e-106 | 308 |
| Msa0684220 | MtrunA17_Chr6g0453341 | 62.846 | 253 | 84 | 2 | 4 | 256 | 10 | 252 | 6.69e-106 | 307 |
| Msa0684220 | MtrunA17_Chr4g0069711 | 59.471 | 227 | 89 | 2 | 30 | 255 | 59 | 283 | 6.44e-103 | 300 |
| Msa0684220 | MtrunA17_Chr1g0157061 | 61.504 | 226 | 83 | 3 | 32 | 254 | 14 | 238 | 1.72e-97 | 285 |
| Msa0684220 | MtrunA17_Chr8g0360041 | 57.207 | 222 | 93 | 1 | 32 | 253 | 31 | 250 | 5.87e-95 | 279 |
| Msa0684220 | MtrunA17_Chr7g0218751 | 57.399 | 223 | 93 | 1 | 32 | 254 | 28 | 248 | 4.93e-94 | 276 |
| Msa0684220 | MtrunA17_Chr7g0218741 | 53.750 | 240 | 106 | 3 | 16 | 254 | 15 | 250 | 1.22e-93 | 276 |
| Msa0684220 | MtrunA17_Chr5g0398271 | 50.400 | 250 | 122 | 2 | 6 | 254 | 11 | 259 | 3.50e-92 | 272 |
| Msa0684220 | MtrunA17_Chr4g0057091 | 50.394 | 254 | 123 | 3 | 6 | 257 | 10 | 262 | 4.26e-91 | 270 |
| Msa0684220 | MtrunA17_Chr7g0218761 | 59.804 | 204 | 80 | 1 | 51 | 254 | 8 | 209 | 1.04e-88 | 261 |
| Msa0684220 | MtrunA17_Chr8g0360721 | 59.204 | 201 | 80 | 1 | 51 | 251 | 17 | 215 | 1.24e-88 | 262 |
| Msa0684220 | MtrunA17_Chr4g0021561 | 48.000 | 250 | 124 | 1 | 7 | 256 | 13 | 256 | 6.43e-88 | 261 |
| Msa0684220 | MtrunA17_Chr5g0433841 | 55.310 | 226 | 100 | 1 | 31 | 256 | 40 | 264 | 6.65e-88 | 261 |
| Msa0684220 | MtrunA17_Chr3g0109801 | 52.340 | 235 | 103 | 5 | 31 | 257 | 52 | 285 | 1.15e-79 | 241 |
| Msa0684220 | MtrunA17_Chr4g0022841 | 59.483 | 116 | 47 | 0 | 138 | 253 | 1 | 116 | 2.28e-45 | 148 |
| Msa0684220 | MtrunA17_Chr4g0022851 | 55.556 | 126 | 48 | 3 | 5 | 129 | 7 | 125 | 2.17e-43 | 143 |
| Msa0684220 | MtrunA17_Chr2g0324191 | 46.154 | 130 | 70 | 0 | 27 | 156 | 23 | 152 | 2.24e-41 | 139 |
| Msa0684220 | MtrunA17_Chr2g0324181 | 51.485 | 101 | 49 | 0 | 156 | 256 | 17 | 117 | 7.95e-32 | 113 |
| Msa0684220 | MtrunA17_Chr2g0324221 | 30.041 | 243 | 144 | 9 | 24 | 254 | 27 | 255 | 5.23e-25 | 99.8 |
| Msa0684220 | MtrunA17_Chr2g0324201 | 28.947 | 266 | 160 | 11 | 4 | 254 | 2 | 253 | 4.81e-23 | 94.7 |
| Msa0684220 | MtrunA17_Chr4g0021641 | 31.780 | 236 | 135 | 11 | 31 | 254 | 40 | 261 | 9.33e-23 | 94.0 |
| Msa0684220 | MtrunA17_Chr8g0359981 | 51.163 | 86 | 33 | 4 | 74 | 156 | 2 | 81 | 3.43e-21 | 85.9 |
| Msa0684220 | MtrunA17_Chr8g0359971 | 45.000 | 80 | 43 | 1 | 177 | 255 | 1 | 80 | 5.37e-19 | 79.0 |
| Msa0684220 | MtrunA17_Chr4g0012801 | 29.237 | 236 | 132 | 11 | 32 | 251 | 42 | 258 | 3.17e-18 | 81.6 |
| Msa0684220 | MtrunA17_Chr7g0231221 | 28.571 | 231 | 135 | 12 | 37 | 251 | 53 | 269 | 1.57e-16 | 77.0 |
| Msa0684220 | MtrunA17_Chr7g0231211 | 28.512 | 242 | 137 | 13 | 27 | 251 | 42 | 264 | 2.37e-15 | 73.9 |
| Msa0684220 | MtrunA17_Chr5g0399811 | 25.991 | 227 | 151 | 9 | 35 | 254 | 32 | 248 | 1.52e-13 | 68.6 |
| Msa0684220 | MtrunA17_Chr4g0038741 | 28.000 | 225 | 127 | 9 | 43 | 251 | 32 | 237 | 3.03e-13 | 67.8 |
| Msa0684220 | MtrunA17_Chr4g0055561 | 25.751 | 233 | 152 | 10 | 28 | 251 | 24 | 244 | 3.50e-13 | 67.4 |
| Msa0684220 | MtrunA17_Chr1g0193571 | 52.542 | 59 | 27 | 1 | 201 | 258 | 4 | 62 | 4.70e-13 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684220 | AT2G39700.1 | 83.794 | 253 | 41 | 0 | 6 | 258 | 5 | 257 | 3.55e-163 | 452 |
| Msa0684220 | AT2G28950.1 | 83.922 | 255 | 40 | 1 | 5 | 258 | 3 | 257 | 1.70e-156 | 435 |
| Msa0684220 | AT3G55500.1 | 78.125 | 256 | 56 | 0 | 3 | 258 | 5 | 260 | 3.06e-154 | 430 |
| Msa0684220 | AT2G37640.1 | 79.447 | 253 | 52 | 0 | 6 | 258 | 10 | 262 | 1.58e-153 | 428 |
| Msa0684220 | AT5G02260.1 | 74.031 | 258 | 67 | 0 | 1 | 258 | 1 | 258 | 1.79e-150 | 420 |
| Msa0684220 | AT2G37640.2 | 82.381 | 210 | 37 | 0 | 49 | 258 | 28 | 237 | 3.75e-132 | 373 |
| Msa0684220 | AT1G69530.2 | 66.798 | 253 | 81 | 2 | 5 | 257 | 1 | 250 | 7.91e-125 | 355 |
| Msa0684220 | AT1G69530.1 | 66.798 | 253 | 81 | 2 | 5 | 257 | 1 | 250 | 7.91e-125 | 355 |
| Msa0684220 | AT1G69530.3 | 66.403 | 253 | 82 | 2 | 5 | 257 | 1 | 250 | 2.73e-123 | 352 |
| Msa0684220 | AT2G03090.1 | 72.124 | 226 | 61 | 1 | 32 | 257 | 30 | 253 | 1.59e-121 | 347 |
| Msa0684220 | AT5G56320.1 | 64.844 | 256 | 83 | 3 | 5 | 257 | 1 | 252 | 1.66e-120 | 344 |
| Msa0684220 | AT5G56320.2 | 64.844 | 256 | 83 | 3 | 5 | 257 | 1 | 252 | 1.66e-120 | 344 |
| Msa0684220 | AT5G56320.3 | 67.355 | 242 | 75 | 2 | 16 | 257 | 15 | 252 | 1.15e-119 | 344 |
| Msa0684220 | AT1G26770.1 | 66.008 | 253 | 82 | 2 | 5 | 257 | 1 | 249 | 5.76e-117 | 335 |
| Msa0684220 | AT1G26770.2 | 65.748 | 254 | 83 | 2 | 4 | 257 | 10 | 259 | 7.38e-117 | 335 |
| Msa0684220 | AT5G05290.1 | 63.347 | 251 | 88 | 3 | 7 | 256 | 8 | 255 | 6.94e-115 | 330 |
| Msa0684220 | AT2G40610.1 | 61.719 | 256 | 92 | 3 | 2 | 256 | 3 | 253 | 2.31e-114 | 328 |
| Msa0684220 | AT3G29030.1 | 65.929 | 226 | 68 | 2 | 32 | 257 | 38 | 254 | 4.22e-110 | 318 |
| Msa0684220 | AT1G69530.4 | 61.660 | 253 | 64 | 3 | 5 | 257 | 1 | 220 | 5.15e-109 | 314 |
| Msa0684220 | AT1G69530.5 | 61.265 | 253 | 65 | 3 | 5 | 257 | 1 | 220 | 1.27e-107 | 311 |
| Msa0684220 | AT4G01630.1 | 60.643 | 249 | 89 | 5 | 6 | 251 | 7 | 249 | 9.72e-107 | 309 |
| Msa0684220 | AT1G20190.1 | 61.538 | 221 | 82 | 2 | 34 | 252 | 28 | 247 | 1.58e-97 | 286 |
| Msa0684220 | AT5G39290.1 | 50.000 | 278 | 111 | 5 | 1 | 254 | 3 | 276 | 3.69e-95 | 281 |
| Msa0684220 | AT5G39270.1 | 50.000 | 278 | 111 | 5 | 1 | 254 | 3 | 276 | 1.76e-94 | 279 |
| Msa0684220 | AT1G62980.1 | 52.800 | 250 | 116 | 2 | 6 | 254 | 5 | 253 | 3.87e-92 | 272 |
| Msa0684220 | AT5G39280.1 | 55.157 | 223 | 96 | 2 | 32 | 254 | 54 | 272 | 1.49e-89 | 266 |
| Msa0684220 | AT1G12560.1 | 51.172 | 256 | 118 | 5 | 4 | 257 | 12 | 262 | 3.15e-89 | 265 |
| Msa0684220 | AT5G39300.1 | 54.709 | 223 | 97 | 2 | 32 | 254 | 55 | 273 | 1.21e-88 | 264 |
| Msa0684220 | AT5G39310.1 | 54.911 | 224 | 96 | 3 | 32 | 254 | 90 | 309 | 3.31e-87 | 262 |
| Msa0684220 | AT3G03220.1 | 53.509 | 228 | 105 | 1 | 31 | 258 | 39 | 265 | 4.96e-86 | 257 |
| Msa0684220 | AT4G38210.1 | 46.311 | 244 | 129 | 1 | 16 | 257 | 12 | 255 | 2.81e-80 | 242 |
| Msa0684220 | AT1G20190.2 | 57.979 | 188 | 76 | 2 | 67 | 252 | 2 | 188 | 3.32e-76 | 229 |
| Msa0684220 | AT3G15370.1 | 47.368 | 247 | 119 | 6 | 12 | 254 | 8 | 247 | 3.36e-76 | 232 |
| Msa0684220 | AT5G39260.1 | 47.191 | 267 | 120 | 6 | 1 | 255 | 3 | 260 | 5.27e-76 | 231 |
| Msa0684220 | AT3G15370.2 | 42.238 | 277 | 119 | 7 | 12 | 254 | 8 | 277 | 1.18e-69 | 216 |
| Msa0684220 | AT4G28250.1 | 30.705 | 241 | 138 | 11 | 28 | 254 | 32 | 257 | 1.07e-23 | 96.7 |
| Msa0684220 | AT2G20750.1 | 29.114 | 237 | 144 | 9 | 31 | 254 | 39 | 264 | 7.43e-22 | 92.0 |
| Msa0684220 | AT1G65680.1 | 30.126 | 239 | 138 | 11 | 28 | 251 | 43 | 267 | 3.51e-20 | 87.4 |
| Msa0684220 | AT4G28250.2 | 29.583 | 240 | 136 | 11 | 28 | 254 | 32 | 251 | 6.56e-20 | 86.7 |
| Msa0684220 | AT2G20750.2 | 32.386 | 176 | 97 | 7 | 31 | 195 | 39 | 203 | 3.56e-16 | 75.5 |
| Msa0684220 | AT4G28250.4 | 32.240 | 183 | 95 | 8 | 28 | 200 | 32 | 195 | 1.18e-15 | 73.9 |
| Msa0684220 | AT4G28250.3 | 32.584 | 178 | 91 | 8 | 28 | 195 | 32 | 190 | 8.27e-15 | 71.6 |
| Msa0684220 | AT3G60570.1 | 23.194 | 263 | 173 | 8 | 10 | 258 | 12 | 259 | 2.34e-13 | 68.6 |
| Msa0684220 | AT4G17030.1 | 24.757 | 206 | 140 | 6 | 9 | 209 | 4 | 199 | 2.04e-12 | 65.5 |
| Msa0684220 | AT3G45970.2 | 24.883 | 213 | 138 | 9 | 50 | 251 | 14 | 215 | 5.76e-12 | 64.3 |
Find 101 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAGCAATGTAGAGCATTT+TGG | 0.171716 | 4_4:+47544021 | None:intergenic |
| GACAAAGAGTGGTGTCATTC+TGG | 0.235057 | 4_4:-47543497 | Msa0684220:CDS |
| TCACTTGGTTGAGCAAAATT+AGG | 0.253485 | 4_4:+47543434 | None:intergenic |
| GCTCCTCCTAGTTGGCAATT+TGG | 0.267981 | 4_4:-47541871 | Msa0684220:CDS |
| TGGAAGAGTGGGAGTACTTA+TGG | 0.288277 | 4_4:+47544160 | None:intergenic |
| GATGCTCATGCTACTTTCTA+TGG | 0.312345 | 4_4:-47543929 | Msa0684220:CDS |
| CGGATTCCGTTACTTTAATC+TGG | 0.315449 | 4_4:-47542082 | Msa0684220:CDS |
| TTTGCTCAACCAAGTGATAA+TGG | 0.336925 | 4_4:-47543428 | Msa0684220:CDS |
| TATGGTGGATCTGATGCTTC+TGG | 0.339901 | 4_4:-47543911 | Msa0684220:CDS |
| GCCAGTTCTGACCCCAGTTT+CGG | 0.341334 | 4_4:+47541977 | None:intergenic |
| TGATTTGTCTTGGTTATTGA+TGG | 0.348494 | 4_4:-47541648 | Msa0684220:three_prime_UTR |
| GGATGCCACTGAGCCGAAAC+TGG | 0.348922 | 4_4:-47541990 | Msa0684220:CDS |
| TGGTTTACAACTTGCATTGT+AGG | 0.350657 | 4_4:+47544196 | None:intergenic |
| AACCTACCCTAGAGATTGAT+TGG | 0.386084 | 4_4:+47544107 | None:intergenic |
| CAATTTGGTCAGACTTTCAC+TGG | 0.392488 | 4_4:-47541856 | Msa0684220:CDS |
| GGTTTACAACTTGCATTGTA+GGG | 0.393654 | 4_4:+47544197 | None:intergenic |
| ATTGTTGAAGCTAGAATTCC+AGG | 0.394127 | 4_4:-47543977 | Msa0684220:CDS |
| CAGTGGCATCCACTCGGTTC+GGG | 0.402414 | 4_4:+47542002 | None:intergenic |
| ACTAACCTGCGATAAGCAAC+AGG | 0.415595 | 4_4:+47543320 | None:intergenic |
| TCAGTGGCATCCACTCGGTT+CGG | 0.423453 | 4_4:+47542001 | None:intergenic |
| ATTGGGAGGTGAGAGTTGAT+TGG | 0.432169 | 4_4:+47544125 | None:intergenic |
| CTTATGGAGTTGGGAAGTGC+TGG | 0.436835 | 4_4:+47544176 | None:intergenic |
| GACTAGGTGTTGATTTGTCT+TGG | 0.439194 | 4_4:-47541658 | Msa0684220:three_prime_UTR |
| TGTCTTGGTTATTGATGGTA+GGG | 0.442385 | 4_4:-47541643 | Msa0684220:three_prime_UTR |
| ACCGTAGATCTTCAACATCT+TGG | 0.445386 | 4_4:-47541900 | Msa0684220:CDS |
| GCCGAAACTGGGGTCAGAAC+TGG | 0.448238 | 4_4:-47541978 | Msa0684220:CDS |
| GTGGGAGTACTTATGGAGTT+GGG | 0.448696 | 4_4:+47544167 | None:intergenic |
| ACAAAGAGTGGTGTCATTCT+GGG | 0.452005 | 4_4:-47543496 | Msa0684220:CDS |
| CACCAACCACCATTATCACT+TGG | 0.453463 | 4_4:+47543419 | None:intergenic |
| AGTGGGAGTACTTATGGAGT+TGG | 0.462111 | 4_4:+47544166 | None:intergenic |
| TTGGAGAGAATGAGATGGAT+GGG | 0.462614 | 4_4:-47541709 | Msa0684220:three_prime_UTR |
| TCACCTCCCAATCAATCTCT+AGG | 0.479472 | 4_4:-47544114 | Msa0684220:five_prime_UTR |
| TTGATTGGGCAGTGAGAGTG+TGG | 0.485587 | 4_4:+47544140 | None:intergenic |
| TTGTCTTGGTTATTGATGGT+AGG | 0.485720 | 4_4:-47541644 | Msa0684220:three_prime_UTR |
| TTGGGAGGTGAGAGTTGATT+GGG | 0.487228 | 4_4:+47544126 | None:intergenic |
| GGAACATTGCTCCTCCTAGT+TGG | 0.491170 | 4_4:-47541879 | Msa0684220:CDS |
| TGGAGAGAATGAGATGGATG+GGG | 0.492356 | 4_4:-47541708 | Msa0684220:three_prime_UTR |
| GTAGCAGTAATGAAAATTGA+AGG | 0.495390 | 4_4:+47543470 | None:intergenic |
| GCAGTGAGAGTGTGGAAGAG+TGG | 0.503109 | 4_4:+47544148 | None:intergenic |
| TCTGATGCTTCTGGCACCAT+GGG | 0.503667 | 4_4:-47543902 | Msa0684220:intron |
| TTATATAACTAATGTAATGA+AGG | 0.507787 | 4_4:-47541598 | Msa0684220:three_prime_UTR |
| AATTTGTATGCTACTAGAGA+AGG | 0.508073 | 4_4:-47541565 | Msa0684220:three_prime_UTR |
| GGAATAAGATTCACCGTGAA+CGG | 0.509029 | 4_4:-47542102 | Msa0684220:CDS |
| GTCTGACCAAATTGCCAACT+AGG | 0.513055 | 4_4:+47541865 | None:intergenic |
| TTAGGAGGAGCATGTGGGTA+CGG | 0.517583 | 4_4:-47543626 | Msa0684220:intron |
| ATTCCACCGCGCTTTCTGCA+TGG | 0.520175 | 4_4:+47542120 | None:intergenic |
| TTGTCCCTGTTGCTTATCGC+AGG | 0.520176 | 4_4:-47543325 | Msa0684220:intron |
| GTGTTTACTCTGGTGGTCAA+TGG | 0.521019 | 4_4:-47543955 | Msa0684220:CDS |
| CAGTGAGAGTGTGGAAGAGT+GGG | 0.521122 | 4_4:+47544149 | None:intergenic |
| TAATCAAAGTGATAAGCAAA+TGG | 0.521796 | 4_4:+47541439 | None:intergenic |
| AAAGTAACGGAATCCGTTCA+CGG | 0.524076 | 4_4:+47542089 | None:intergenic |
| TCAGCAATCTTAAGAAACAT+AGG | 0.524078 | 4_4:+47543362 | None:intergenic |
| AATTTGTACAGTCAAGGTTA+CGG | 0.526954 | 4_4:-47543602 | Msa0684220:CDS |
| ATTAGCAACGTAGCAGGTGC+TGG | 0.528629 | 4_4:-47542054 | Msa0684220:CDS |
| ATCTGATGCTTCTGGCACCA+TGG | 0.529188 | 4_4:-47543903 | Msa0684220:CDS |
| GTGCTAATTAGCAACGTAGC+AGG | 0.532373 | 4_4:-47542060 | Msa0684220:CDS |
| AGAATTCCAGGTGTTTACTC+TGG | 0.536978 | 4_4:-47543965 | Msa0684220:CDS |
| ACCTACCCTAGAGATTGATT+GGG | 0.539903 | 4_4:+47544108 | None:intergenic |
| TCCAAGATGTTGAAGATCTA+CGG | 0.544252 | 4_4:+47541899 | None:intergenic |
| GATGCCACTGAGCCGAAACT+GGG | 0.544292 | 4_4:-47541989 | Msa0684220:CDS |
| AGAGAAGGAAAGCGAAAGGT+AGG | 0.545681 | 4_4:-47541550 | Msa0684220:three_prime_UTR |
| CTTTGATTAAGTGTTTGTGT+TGG | 0.550603 | 4_4:-47541425 | Msa0684220:three_prime_UTR |
| ATCGTGCGCGCCTACGTGAA+AGG | 0.554876 | 4_4:-47542027 | Msa0684220:CDS |
| TACGGAAATTTGTACAGTCA+AGG | 0.556701 | 4_4:-47543608 | Msa0684220:CDS |
| AAACACGAAAGGACAAAGCC+TGG | 0.564825 | 4_4:+47541932 | None:intergenic |
| ATTCCAGGTGTTTACTCTGG+TGG | 0.567430 | 4_4:-47543962 | Msa0684220:CDS |
| AAGATTGCTGAGTATCGTGC+TGG | 0.570660 | 4_4:-47543350 | Msa0684220:CDS |
| TGACCACCAGAGTAAACACC+TGG | 0.570964 | 4_4:+47543959 | None:intergenic |
| AGCACTGCTTTGTTCAACAA+TGG | 0.578791 | 4_4:-47543560 | Msa0684220:CDS |
| GGTTCGGGTTCCTTTCACGT+AGG | 0.581009 | 4_4:+47542017 | None:intergenic |
| TTTGGAGAGAATGAGATGGA+TGG | 0.581394 | 4_4:-47541710 | Msa0684220:three_prime_UTR |
| CACCTCCCAATCAATCTCTA+GGG | 0.584744 | 4_4:-47544113 | Msa0684220:five_prime_UTR |
| TCGGCTCAGTGGCATCCACT+CGG | 0.585195 | 4_4:+47541996 | None:intergenic |
| TACCCTAGAGATTGATTGGG+AGG | 0.598826 | 4_4:+47544111 | None:intergenic |
| TTCAACAATGGTTTAAGCTG+TGG | 0.599006 | 4_4:-47543548 | Msa0684220:CDS |
| GTTTACAACTTGCATTGTAG+GGG | 0.600193 | 4_4:+47544198 | None:intergenic |
| AAGGTAGGAAATGCTGAAAG+TGG | 0.601780 | 4_4:-47541535 | Msa0684220:three_prime_UTR |
| TACTAGAGAAGGAAAGCGAA+AGG | 0.602464 | 4_4:-47541554 | Msa0684220:three_prime_UTR |
| CTTGGTTGAGCAAAATTAGG+AGG | 0.603163 | 4_4:+47543437 | None:intergenic |
| TTAGCACCAGATTAAAGTAA+CGG | 0.605687 | 4_4:+47542076 | None:intergenic |
| TGCTGAAAGTGGCTAAACAA+TGG | 0.608988 | 4_4:-47541524 | Msa0684220:three_prime_UTR |
| GGCATAGCAAGATCAAAATG+AGG | 0.611060 | 4_4:+47543383 | None:intergenic |
| GCTCATGCTACTTTCTATGG+TGG | 0.618802 | 4_4:-47543926 | Msa0684220:CDS |
| TGACCCCAGTTTCGGCTCAG+TGG | 0.625730 | 4_4:+47541985 | None:intergenic |
| CTGGCCCACTAAAACCGCGT+TGG | 0.630033 | 4_4:+47541951 | None:intergenic |
| GCAAGATCAAAATGAGGACG+AGG | 0.630560 | 4_4:+47543389 | None:intergenic |
| GTCACTGCTTGAAACACGAA+AGG | 0.633040 | 4_4:+47541921 | None:intergenic |
| ATGACAAGTTAATTGTGACT+AGG | 0.638803 | 4_4:-47541674 | Msa0684220:three_prime_UTR |
| AACCAAGTGATAATGGTGGT+TGG | 0.649043 | 4_4:-47543421 | Msa0684220:CDS |
| AGATCAAAATGAGGACGAGG+AGG | 0.649689 | 4_4:+47543392 | None:intergenic |
| TCCCAATCAATCTCTAGGGT+AGG | 0.651811 | 4_4:-47544109 | Msa0684220:five_prime_UTR |
| TGAAAGGAACCCGAACCGAG+TGG | 0.653524 | 4_4:-47542011 | Msa0684220:CDS |
| GTGCCATGCAGAAAGCGCGG+TGG | 0.659131 | 4_4:-47542123 | Msa0684220:CDS |
| TGACCAAATTGCCAACTAGG+AGG | 0.660446 | 4_4:+47541868 | None:intergenic |
| GATCAAAATGAGGACGAGGA+GGG | 0.663864 | 4_4:+47543393 | None:intergenic |
| ATGCCACTGAGCCGAAACTG+GGG | 0.678002 | 4_4:-47541988 | Msa0684220:CDS |
| AGGGTGCCATGCAGAAAGCG+CGG | 0.679047 | 4_4:-47542126 | Msa0684220:CDS |
| AGTGTGCAAATGACAAAGAG+TGG | 0.680419 | 4_4:-47543508 | Msa0684220:CDS |
| GCTCAACCAAGTGATAATGG+TGG | 0.719451 | 4_4:-47543425 | Msa0684220:CDS |
| CTAACCTGCGATAAGCAACA+GGG | 0.724040 | 4_4:+47543321 | None:intergenic |
| TCAGAACTGGCAATCCAACG+CGG | 0.772854 | 4_4:-47541965 | Msa0684220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATCTTTAAGTTATTT+AGG | - | chr4_4:47542344-47542363 | Msa0684220:intron | 10.0% |
| !!! | AAGTTTATTTTATTTTACTT+TGG | - | chr4_4:47542372-47542391 | Msa0684220:intron | 10.0% |
| !! | TATACTACTAAAATAAATTA+AGG | + | chr4_4:47542628-47542647 | None:intergenic | 10.0% |
| !!! | TTAATTATCCAATTTTTATA+TGG | + | chr4_4:47543256-47543275 | None:intergenic | 10.0% |
| !!! | CTAATATATTTTTTTAATGT+TGG | - | chr4_4:47543766-47543785 | Msa0684220:intron | 10.0% |
| !!! | ATGTTTTTTTAGGTTTAATT+AGG | + | chr4_4:47541867-47541886 | None:intergenic | 15.0% |
| !!! | TTTATGTTAATTTTTTGTGT+TGG | - | chr4_4:47541901-47541920 | Msa0684220:CDS | 15.0% |
| !!! | ACTACATTTTTTTAATTTCT+TGG | - | chr4_4:47542281-47542300 | Msa0684220:intron | 15.0% |
| !! | TGAAAAGAAAAAAAAATTAG+AGG | - | chr4_4:47542553-47542572 | Msa0684220:intron | 15.0% |
| !!! | TAAAAATAATATAAAGTACC+AGG | - | chr4_4:47542590-47542609 | Msa0684220:intron | 15.0% |
| !!! | TTTTCTTTTTCATTAATTGA+GGG | + | chr4_4:47542656-47542675 | None:intergenic | 15.0% |
| !!! | ATATATTATTGACTTTTCTT+TGG | - | chr4_4:47542683-47542702 | Msa0684220:intron | 15.0% |
| !! | CTATCTATATTAAATAGAAA+TGG | + | chr4_4:47543221-47543240 | None:intergenic | 15.0% |
| !! | TTATATAACTAATGTAATGA+AGG | - | chr4_4:47543957-47543976 | Msa0684220:CDS | 15.0% |
| !!! | ATAATTTGTTTTGATTTGTT+TGG | - | chr4_4:47544191-47544210 | Msa0684220:five_prime_UTR | 15.0% |
| !!! | TAATTTGTTTTGATTTGTTT+GGG | - | chr4_4:47544192-47544211 | Msa0684220:five_prime_UTR | 15.0% |
| !! | AAAAATACTAGAAATAGCTA+TGG | - | chr4_4:47541508-47541527 | Msa0684220:three_prime_UTR | 20.0% |
| !!! | GTAACATTTCATGTTTTTTT+AGG | + | chr4_4:47541877-47541896 | None:intergenic | 20.0% |
| !! | TCTTAACAAGGAAAAATATT+TGG | - | chr4_4:47542434-47542453 | Msa0684220:intron | 20.0% |
| !! | TTAAGGTTAAATTATATTCC+TGG | + | chr4_4:47542611-47542630 | None:intergenic | 20.0% |
| !!! | CTTTTCTTTTTCATTAATTG+AGG | + | chr4_4:47542657-47542676 | None:intergenic | 20.0% |
| !! | TATAGTTAAGAAATTAGTTG+TGG | - | chr4_4:47542717-47542736 | Msa0684220:intron | 20.0% |
| !! | AGAAATAAATGAAGTAACTA+GGG | + | chr4_4:47542799-47542818 | None:intergenic | 20.0% |
| !! | GTAGAAAATGGAATTAATTA+TGG | - | chr4_4:47543305-47543324 | Msa0684220:intron | 20.0% |
| !! | AAAATGGAATTAATTATGGT+AGG | - | chr4_4:47543309-47543328 | Msa0684220:intron | 20.0% |
| !! | AAATGGAATTAATTATGGTA+GGG | - | chr4_4:47543310-47543329 | Msa0684220:intron | 20.0% |
| !! | AAAATGTGAAAAGTCAAAAA+CGG | - | chr4_4:47543381-47543400 | Msa0684220:CDS | 20.0% |
| !!! | TATTTTGTTGATATTTACAC+AGG | - | chr4_4:47543409-47543428 | Msa0684220:CDS | 20.0% |
| !!! | ATTTTGTTGATATTTACACA+GGG | - | chr4_4:47543410-47543429 | Msa0684220:CDS | 20.0% |
| !!! | TTTCACTGGAAAAAATTTTA+GGG | - | chr4_4:47543713-47543732 | Msa0684220:intron | 20.0% |
| !!! | TATTTTTTTAATGTTGGTTG+AGG | - | chr4_4:47543772-47543791 | Msa0684220:intron | 20.0% |
| !!! | TTTTTCTTACTGTTTTTAGT+TGG | - | chr4_4:47543803-47543822 | Msa0684220:intron | 20.0% |
| ! | AATCACTTTGACATATAGTT+AGG | - | chr4_4:47541742-47541761 | Msa0684220:three_prime_UTR | 25.0% |
| ! | ATCACTTTGACATATAGTTA+GGG | - | chr4_4:47541743-47541762 | Msa0684220:three_prime_UTR | 25.0% |
| !!! | TTTTTTGTGTTGGTGTTTTT+AGG | - | chr4_4:47541911-47541930 | Msa0684220:CDS | 25.0% |
| ! | GATACAAGTGGTAAATAATT+AGG | - | chr4_4:47542409-47542428 | Msa0684220:intron | 25.0% |
| ! | AATAATTAGGTCTCTTAACA+AGG | - | chr4_4:47542422-47542441 | Msa0684220:intron | 25.0% |
| ! | CAGAAATAAATGAAGTAACT+AGG | + | chr4_4:47542800-47542819 | None:intergenic | 25.0% |
| ! | ATGGAAAGAATGAAAAAGAA+AGG | + | chr4_4:47543063-47543082 | None:intergenic | 25.0% |
| ! | TAAAATATGAGACACTAACA+TGG | + | chr4_4:47543082-47543101 | None:intergenic | 25.0% |
| !! | AGTGTCTCATATTTTACTTT+TGG | - | chr4_4:47543086-47543105 | Msa0684220:intron | 25.0% |
| !! | CTTTCACTGGAAAAAATTTT+AGG | - | chr4_4:47543712-47543731 | Msa0684220:intron | 25.0% |
| ! | TAAAAATACAAATTAGCTGC+GGG | + | chr4_4:47544060-47544079 | None:intergenic | 25.0% |
| ! | GTAAAAATACAAATTAGCTG+CGG | + | chr4_4:47544061-47544080 | None:intergenic | 25.0% |
| !!! | GTATTTTTACAGAATGATGA+TGG | - | chr4_4:47544071-47544090 | Msa0684220:five_prime_UTR | 25.0% |
| ! | TAATCAAAGTGATAAGCAAA+TGG | + | chr4_4:47544119-47544138 | None:intergenic | 25.0% |
| !!! | TGTTCTTAAGTTGATTTTAG+AGG | - | chr4_4:47544165-47544184 | Msa0684220:five_prime_UTR | 25.0% |
| !! | AAAGCAATGTAGAGCATTTT+GGG | + | chr4_4:47541536-47541555 | None:intergenic | 30.0% |
| GACATAATCTCGATGTATTA+GGG | + | chr4_4:47541788-47541807 | None:intergenic | 30.0% | |
| TGACATAATCTCGATGTATT+AGG | + | chr4_4:47541789-47541808 | None:intergenic | 30.0% | |
| TATCCACATGTTTGTATTTG+CGG | + | chr4_4:47541818-47541837 | None:intergenic | 30.0% | |
| AATTTGTACAGTCAAGGTTA+CGG | - | chr4_4:47541953-47541972 | Msa0684220:CDS | 30.0% | |
| GTAGCAGTAATGAAAATTGA+AGG | + | chr4_4:47542088-47542107 | None:intergenic | 30.0% | |
| TCAGCAATCTTAAGAAACAT+AGG | + | chr4_4:47542196-47542215 | None:intergenic | 30.0% | |
| TGTAGTAAAAGAGCAAAAGA+AGG | + | chr4_4:47542267-47542286 | None:intergenic | 30.0% | |
| TCTTAAGTTTGTGATACAAG+TGG | - | chr4_4:47542397-47542416 | Msa0684220:intron | 30.0% | |
| GTTAAGAAATTAGTTGTGGT+AGG | - | chr4_4:47542721-47542740 | Msa0684220:intron | 30.0% | |
| ! | CAATTTTTGTACGAAGAACA+AGG | + | chr4_4:47542998-47543017 | None:intergenic | 30.0% |
| CGACTCAACCATATAAAAAT+TGG | - | chr4_4:47543245-47543264 | Msa0684220:intron | 30.0% | |
| TGTACGGAAAAAGTAGAAAA+TGG | - | chr4_4:47543293-47543312 | Msa0684220:intron | 30.0% | |
| TTAGCACCAGATTAAAGTAA+CGG | + | chr4_4:47543482-47543501 | None:intergenic | 30.0% | |
| !! | TTTTTAATGTTGGTTGAGGA+AGG | - | chr4_4:47543776-47543795 | Msa0684220:intron | 30.0% |
| !!! | GTTTTTTGACTTGATGCTTT+TGG | - | chr4_4:47543827-47543846 | Msa0684220:intron | 30.0% |
| ATGACAAGTTAATTGTGACT+AGG | - | chr4_4:47543881-47543900 | Msa0684220:intron | 30.0% | |
| ! | TGATTTGTCTTGGTTATTGA+TGG | - | chr4_4:47543907-47543926 | Msa0684220:CDS | 30.0% |
| AATTTGTATGCTACTAGAGA+AGG | - | chr4_4:47543990-47544009 | Msa0684220:CDS | 30.0% | |
| !!! | TTTTTACAGAATGATGATGG+TGG | - | chr4_4:47544074-47544093 | Msa0684220:five_prime_UTR | 30.0% |
| CTTTGATTAAGTGTTTGTGT+TGG | - | chr4_4:47544130-47544149 | Msa0684220:five_prime_UTR | 30.0% | |
| GTTTACAACTTGCATTGTAG+GGG | + | chr4_4:47541360-47541379 | None:intergenic | 35.0% | |
| GGTTTACAACTTGCATTGTA+GGG | + | chr4_4:47541361-47541380 | None:intergenic | 35.0% | |
| TGGTTTACAACTTGCATTGT+AGG | + | chr4_4:47541362-47541381 | None:intergenic | 35.0% | |
| !! | GAAAGCAATGTAGAGCATTT+TGG | + | chr4_4:47541537-47541556 | None:intergenic | 35.0% |
| ATTGTTGAAGCTAGAATTCC+AGG | - | chr4_4:47541578-47541597 | Msa0684220:three_prime_UTR | 35.0% | |
| !! | GGTAATTTGTTACATACCCA+TGG | + | chr4_4:47541672-47541691 | None:intergenic | 35.0% |
| AGAAAATACGAGGGCAAAAA+GGG | + | chr4_4:47541700-47541719 | None:intergenic | 35.0% | |
| !!! | TTTGTGTTGGTGTTTTTAGG+AGG | - | chr4_4:47541914-47541933 | Msa0684220:CDS | 35.0% |
| TACGGAAATTTGTACAGTCA+AGG | - | chr4_4:47541947-47541966 | Msa0684220:CDS | 35.0% | |
| TTCAACAATGGTTTAAGCTG+TGG | - | chr4_4:47542007-47542026 | Msa0684220:CDS | 35.0% | |
| TCACTTGGTTGAGCAAAATT+AGG | + | chr4_4:47542124-47542143 | None:intergenic | 35.0% | |
| TTTGCTCAACCAAGTGATAA+TGG | - | chr4_4:47542127-47542146 | Msa0684220:CDS | 35.0% | |
| ACAGACAAGTACTATACACT+TGG | + | chr4_4:47542516-47542535 | None:intergenic | 35.0% | |
| TTCATTAACTGTGATGAGAC+TGG | + | chr4_4:47542750-47542769 | None:intergenic | 35.0% | |
| !! | TGATGGTGTTTTCGACTTTT+TGG | - | chr4_4:47542850-47542869 | Msa0684220:intron | 35.0% |
| AAATTTAGGTACGTTGACGT+AGG | + | chr4_4:47543155-47543174 | None:intergenic | 35.0% | |
| GTGAAGTGATATAGACTGTA+CGG | - | chr4_4:47543277-47543296 | Msa0684220:intron | 35.0% | |
| TCCAAGATGTTGAAGATCTA+CGG | + | chr4_4:47543659-47543678 | None:intergenic | 35.0% | |
| ! | TTGTCTTGGTTATTGATGGT+AGG | - | chr4_4:47543911-47543930 | Msa0684220:CDS | 35.0% |
| ! | TGTCTTGGTTATTGATGGTA+GGG | - | chr4_4:47543912-47543931 | Msa0684220:CDS | 35.0% |
| !! | TGCATTGTAGGGGTCATTTT+TGG | + | chr4_4:47541350-47541369 | None:intergenic | 40.0% |
| ACCTACCCTAGAGATTGATT+GGG | + | chr4_4:47541450-47541469 | None:intergenic | 40.0% | |
| AACCTACCCTAGAGATTGAT+TGG | + | chr4_4:47541451-47541470 | None:intergenic | 40.0% | |
| AGAATTCCAGGTGTTTACTC+TGG | - | chr4_4:47541590-47541609 | Msa0684220:three_prime_UTR | 40.0% | |
| !! | GATGCTCATGCTACTTTCTA+TGG | - | chr4_4:47541626-47541645 | Msa0684220:three_prime_UTR | 40.0% |
| CAGAAAATACGAGGGCAAAA+AGG | + | chr4_4:47541701-47541720 | None:intergenic | 40.0% | |
| ! | CTTTTTGCCCTCGTATTTTC+TGG | - | chr4_4:47541699-47541718 | Msa0684220:three_prime_UTR | 40.0% |
| CCTCAATCCAGAAAATACGA+GGG | + | chr4_4:47541709-47541728 | None:intergenic | 40.0% | |
| ! | CCTCGTATTTTCTGGATTGA+GGG | - | chr4_4:47541707-47541726 | Msa0684220:three_prime_UTR | 40.0% |
| TCACCGCAAATACAAACATG+TGG | - | chr4_4:47541812-47541831 | Msa0684220:three_prime_UTR | 40.0% | |
| !!! | TGTTTTTAGGAGGAGCATGT+GGG | - | chr4_4:47541924-47541943 | Msa0684220:CDS | 40.0% |
| ! | AGCACTGCTTTGTTCAACAA+TGG | - | chr4_4:47541995-47542014 | Msa0684220:CDS | 40.0% |
| AGTGTGCAAATGACAAAGAG+TGG | - | chr4_4:47542047-47542066 | Msa0684220:CDS | 40.0% | |
| !! | ACAAAGAGTGGTGTCATTCT+GGG | - | chr4_4:47542059-47542078 | Msa0684220:CDS | 40.0% |
| CTTGGTTGAGCAAAATTAGG+AGG | + | chr4_4:47542121-47542140 | None:intergenic | 40.0% | |
| !! | AACCAAGTGATAATGGTGGT+TGG | - | chr4_4:47542134-47542153 | Msa0684220:intron | 40.0% |
| GGCATAGCAAGATCAAAATG+AGG | + | chr4_4:47542175-47542194 | None:intergenic | 40.0% | |
| GTTGCTCTAGTCAAATGTGA+TGG | - | chr4_4:47542833-47542852 | Msa0684220:intron | 40.0% | |
| TGTGTGTCTGATTCATGAAG+TGG | - | chr4_4:47542904-47542923 | Msa0684220:intron | 40.0% | |
| GTGTGTCTGATTCATGAAGT+GGG | - | chr4_4:47542905-47542924 | Msa0684220:intron | 40.0% | |
| TGTGTCTGATTCATGAAGTG+GGG | - | chr4_4:47542906-47542925 | Msa0684220:intron | 40.0% | |
| GGAATAAGATTCACCGTGAA+CGG | - | chr4_4:47543453-47543472 | Msa0684220:CDS | 40.0% | |
| ! | AAAGTAACGGAATCCGTTCA+CGG | + | chr4_4:47543469-47543488 | None:intergenic | 40.0% |
| ! | CGGATTCCGTTACTTTAATC+TGG | - | chr4_4:47543473-47543492 | Msa0684220:CDS | 40.0% |
| ACCGTAGATCTTCAACATCT+TGG | - | chr4_4:47543655-47543674 | Msa0684220:intron | 40.0% | |
| CAATTTGGTCAGACTTTCAC+TGG | - | chr4_4:47543699-47543718 | Msa0684220:intron | 40.0% | |
| !! | TGCTTTTGGAGAGAATGAGA+TGG | - | chr4_4:47543841-47543860 | Msa0684220:intron | 40.0% |
| TTTGGAGAGAATGAGATGGA+TGG | - | chr4_4:47543845-47543864 | Msa0684220:intron | 40.0% | |
| TTGGAGAGAATGAGATGGAT+GGG | - | chr4_4:47543846-47543865 | Msa0684220:intron | 40.0% | |
| !! | GACTAGGTGTTGATTTGTCT+TGG | - | chr4_4:47543897-47543916 | Msa0684220:intron | 40.0% |
| TACTAGAGAAGGAAAGCGAA+AGG | - | chr4_4:47544001-47544020 | Msa0684220:CDS | 40.0% | |
| AAGGTAGGAAATGCTGAAAG+TGG | - | chr4_4:47544020-47544039 | Msa0684220:CDS | 40.0% | |
| TGCTGAAAGTGGCTAAACAA+TGG | - | chr4_4:47544031-47544050 | Msa0684220:CDS | 40.0% | |
| !! | GTGGGAGTACTTATGGAGTT+GGG | + | chr4_4:47541391-47541410 | None:intergenic | 45.0% |
| !! | AGTGGGAGTACTTATGGAGT+TGG | + | chr4_4:47541392-47541411 | None:intergenic | 45.0% |
| !! | TGGAAGAGTGGGAGTACTTA+TGG | + | chr4_4:47541398-47541417 | None:intergenic | 45.0% |
| ! | TTGGGAGGTGAGAGTTGATT+GGG | + | chr4_4:47541432-47541451 | None:intergenic | 45.0% |
| ! | ATTGGGAGGTGAGAGTTGAT+TGG | + | chr4_4:47541433-47541452 | None:intergenic | 45.0% |
| TCACCTCCCAATCAATCTCT+AGG | - | chr4_4:47541441-47541460 | Msa0684220:three_prime_UTR | 45.0% | |
| CACCTCCCAATCAATCTCTA+GGG | - | chr4_4:47541442-47541461 | Msa0684220:three_prime_UTR | 45.0% | |
| TACCCTAGAGATTGATTGGG+AGG | + | chr4_4:47541447-47541466 | None:intergenic | 45.0% | |
| !! | TCCCAATCAATCTCTAGGGT+AGG | - | chr4_4:47541446-47541465 | Msa0684220:three_prime_UTR | 45.0% |
| ATTCCAGGTGTTTACTCTGG+TGG | - | chr4_4:47541593-47541612 | Msa0684220:three_prime_UTR | 45.0% | |
| GTGTTTACTCTGGTGGTCAA+TGG | - | chr4_4:47541600-47541619 | Msa0684220:three_prime_UTR | 45.0% | |
| !! | GCTCATGCTACTTTCTATGG+TGG | - | chr4_4:47541629-47541648 | Msa0684220:three_prime_UTR | 45.0% |
| !! | TATGGTGGATCTGATGCTTC+TGG | - | chr4_4:47541644-47541663 | Msa0684220:three_prime_UTR | 45.0% |
| ACGAGGGCAAAAAGGGAAAT+GGG | + | chr4_4:47541693-47541712 | None:intergenic | 45.0% | |
| TACGAGGGCAAAAAGGGAAA+TGG | + | chr4_4:47541694-47541713 | None:intergenic | 45.0% | |
| ! | CCCTCGTATTTTCTGGATTG+AGG | - | chr4_4:47541706-47541725 | Msa0684220:three_prime_UTR | 45.0% |
| CCCTCAATCCAGAAAATACG+AGG | + | chr4_4:47541710-47541729 | None:intergenic | 45.0% | |
| !!! | GTGTTTTTAGGAGGAGCATG+TGG | - | chr4_4:47541923-47541942 | Msa0684220:CDS | 45.0% |
| !! | GACAAAGAGTGGTGTCATTC+TGG | - | chr4_4:47542058-47542077 | Msa0684220:CDS | 45.0% |
| !! | GCTCAACCAAGTGATAATGG+TGG | - | chr4_4:47542130-47542149 | Msa0684220:intron | 45.0% |
| CACCAACCACCATTATCACT+TGG | + | chr4_4:47542139-47542158 | None:intergenic | 45.0% | |
| GATCAAAATGAGGACGAGGA+GGG | + | chr4_4:47542165-47542184 | None:intergenic | 45.0% | |
| AGATCAAAATGAGGACGAGG+AGG | + | chr4_4:47542166-47542185 | None:intergenic | 45.0% | |
| GCAAGATCAAAATGAGGACG+AGG | + | chr4_4:47542169-47542188 | None:intergenic | 45.0% | |
| ! | AAGATTGCTGAGTATCGTGC+TGG | - | chr4_4:47542205-47542224 | Msa0684220:intron | 45.0% |
| CTAACCTGCGATAAGCAACA+GGG | + | chr4_4:47542237-47542256 | None:intergenic | 45.0% | |
| ACTAACCTGCGATAAGCAAC+AGG | + | chr4_4:47542238-47542257 | None:intergenic | 45.0% | |
| !! | GAAGTGGGGTAGTGTTACTT+CGG | - | chr4_4:47542920-47542939 | Msa0684220:intron | 45.0% |
| !! | AAGTGGGGTAGTGTTACTTC+GGG | - | chr4_4:47542921-47542940 | Msa0684220:intron | 45.0% |
| !! | GGTAGTGTTACTTCGGGTAA+AGG | - | chr4_4:47542927-47542946 | Msa0684220:intron | 45.0% |
| GTGCTAATTAGCAACGTAGC+AGG | - | chr4_4:47543495-47543514 | Msa0684220:CDS | 45.0% | |
| !! | CAATCCAACGCGGTTTTAGT+GGG | - | chr4_4:47543600-47543619 | Msa0684220:CDS | 45.0% |
| AAACACGAAAGGACAAAGCC+TGG | + | chr4_4:47543626-47543645 | None:intergenic | 45.0% | |
| GTCACTGCTTGAAACACGAA+AGG | + | chr4_4:47543637-47543656 | None:intergenic | 45.0% | |
| TGACCAAATTGCCAACTAGG+AGG | + | chr4_4:47543690-47543709 | None:intergenic | 45.0% | |
| GTCTGACCAAATTGCCAACT+AGG | + | chr4_4:47543693-47543712 | None:intergenic | 45.0% | |
| TGGAGAGAATGAGATGGATG+GGG | - | chr4_4:47543847-47543866 | Msa0684220:intron | 45.0% | |
| AGAGAAGGAAAGCGAAAGGT+AGG | - | chr4_4:47544005-47544024 | Msa0684220:CDS | 45.0% | |
| !!! | ATTATTTTTAGATTTTATTT+TGG | + | chr4_4:47542580-47542599 | None:intergenic | 5.0% |
| !! | TAAAAAAAAAATGAAAATTT+AGG | + | chr4_4:47543169-47543188 | None:intergenic | 5.0% |
| ! | CTTATGGAGTTGGGAAGTGC+TGG | + | chr4_4:47541382-47541401 | None:intergenic | 50.0% |
| ! | CAGTGAGAGTGTGGAAGAGT+GGG | + | chr4_4:47541409-47541428 | None:intergenic | 50.0% |
| TTGATTGGGCAGTGAGAGTG+TGG | + | chr4_4:47541418-47541437 | None:intergenic | 50.0% | |
| TGACCACCAGAGTAAACACC+TGG | + | chr4_4:47541599-47541618 | None:intergenic | 50.0% | |
| ATCTGATGCTTCTGGCACCA+TGG | - | chr4_4:47541652-47541671 | Msa0684220:three_prime_UTR | 50.0% | |
| TCTGATGCTTCTGGCACCAT+GGG | - | chr4_4:47541653-47541672 | Msa0684220:three_prime_UTR | 50.0% | |
| ! | TTAGGAGGAGCATGTGGGTA+CGG | - | chr4_4:47541929-47541948 | Msa0684220:CDS | 50.0% |
| ! | TTGTCCCTGTTGCTTATCGC+AGG | - | chr4_4:47542230-47542249 | Msa0684220:intron | 50.0% |
| ATTAGCAACGTAGCAGGTGC+TGG | - | chr4_4:47543501-47543520 | Msa0684220:CDS | 50.0% | |
| TCAGAACTGGCAATCCAACG+CGG | - | chr4_4:47543590-47543609 | Msa0684220:CDS | 50.0% | |
| !! | GCAATCCAACGCGGTTTTAG+TGG | - | chr4_4:47543599-47543618 | Msa0684220:CDS | 50.0% |
| GGAACATTGCTCCTCCTAGT+TGG | - | chr4_4:47543676-47543695 | Msa0684220:intron | 50.0% | |
| GCTCCTCCTAGTTGGCAATT+TGG | - | chr4_4:47543684-47543703 | Msa0684220:intron | 50.0% | |
| ! | GCAGTGAGAGTGTGGAAGAG+TGG | + | chr4_4:47541410-47541429 | None:intergenic | 55.0% |
| ATTCCACCGCGCTTTCTGCA+TGG | + | chr4_4:47543438-47543457 | None:intergenic | 55.0% | |
| ! | GGTTCGGGTTCCTTTCACGT+AGG | + | chr4_4:47543541-47543560 | None:intergenic | 55.0% |
| TGAAAGGAACCCGAACCGAG+TGG | - | chr4_4:47543544-47543563 | Msa0684220:CDS | 55.0% | |
| TCAGTGGCATCCACTCGGTT+CGG | + | chr4_4:47543557-47543576 | None:intergenic | 55.0% | |
| GATGCCACTGAGCCGAAACT+GGG | - | chr4_4:47543566-47543585 | Msa0684220:CDS | 55.0% | |
| ATGCCACTGAGCCGAAACTG+GGG | - | chr4_4:47543567-47543586 | Msa0684220:CDS | 55.0% | |
| ! | GCCAGTTCTGACCCCAGTTT+CGG | + | chr4_4:47543581-47543600 | None:intergenic | 55.0% |
| ! | AGGGTGCCATGCAGAAAGCG+CGG | - | chr4_4:47543429-47543448 | Msa0684220:CDS | 60.0% |
| ATCGTGCGCGCCTACGTGAA+AGG | - | chr4_4:47543528-47543547 | Msa0684220:CDS | 60.0% | |
| CAGTGGCATCCACTCGGTTC+GGG | + | chr4_4:47543556-47543575 | None:intergenic | 60.0% | |
| TCGGCTCAGTGGCATCCACT+CGG | + | chr4_4:47543562-47543581 | None:intergenic | 60.0% | |
| GGATGCCACTGAGCCGAAAC+TGG | - | chr4_4:47543565-47543584 | Msa0684220:CDS | 60.0% | |
| TGACCCCAGTTTCGGCTCAG+TGG | + | chr4_4:47543573-47543592 | None:intergenic | 60.0% | |
| GCCGAAACTGGGGTCAGAAC+TGG | - | chr4_4:47543577-47543596 | Msa0684220:CDS | 60.0% | |
| CTGGCCCACTAAAACCGCGT+TGG | + | chr4_4:47543607-47543626 | None:intergenic | 60.0% | |
| !! | CAACGCGGTTTTAGTGGGCC+AGG | - | chr4_4:47543605-47543624 | Msa0684220:CDS | 60.0% |
| ! | GTGCCATGCAGAAAGCGCGG+TGG | - | chr4_4:47543432-47543451 | Msa0684220:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 47541340 | 47544237 | 47541340 | ID=Msa0684220;Name=Msa0684220 |
| chr4_4 | mRNA | 47541340 | 47544237 | 47541340 | ID=Msa0684220-mRNA-1;Parent=Msa0684220;Name=Msa0684220-mRNA-1;_AED=0.22;_eAED=0.22;_QI=187|1|1|1|1|1|3|497|258 |
| chr4_4 | exon | 47541340 | 47542146 | 47541340 | ID=Msa0684220-mRNA-1:exon:11736;Parent=Msa0684220-mRNA-1 |
| chr4_4 | exon | 47543326 | 47543644 | 47543326 | ID=Msa0684220-mRNA-1:exon:11735;Parent=Msa0684220-mRNA-1 |
| chr4_4 | exon | 47543903 | 47544237 | 47543903 | ID=Msa0684220-mRNA-1:exon:11734;Parent=Msa0684220-mRNA-1 |
| chr4_4 | five_prime_UTR | 47544051 | 47544237 | 47544051 | ID=Msa0684220-mRNA-1:five_prime_utr;Parent=Msa0684220-mRNA-1 |
| chr4_4 | CDS | 47543903 | 47544050 | 47543903 | ID=Msa0684220-mRNA-1:cds;Parent=Msa0684220-mRNA-1 |
| chr4_4 | CDS | 47543326 | 47543644 | 47543326 | ID=Msa0684220-mRNA-1:cds;Parent=Msa0684220-mRNA-1 |
| chr4_4 | CDS | 47541837 | 47542146 | 47541837 | ID=Msa0684220-mRNA-1:cds;Parent=Msa0684220-mRNA-1 |
| chr4_4 | three_prime_UTR | 47541340 | 47541836 | 47541340 | ID=Msa0684220-mRNA-1:three_prime_utr;Parent=Msa0684220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
