AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0497140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0497140 MtrunA17_Chr3g0092091 80.237 253 2 1 1 205 1 253 9.89e-143 398
Msa0497140 MtrunA17_Chr8g0345631 55.670 194 80 2 15 202 73 266 2.41e-70 215
Msa0497140 MtrunA17_Chr2g0301081 51.531 196 89 2 15 204 72 267 4.00e-64 199
Msa0497140 MtrunA17_Chr3g0133901 49.246 199 93 4 15 205 68 266 1.35e-59 187
Msa0497140 MtrunA17_Chr2g0296081 93.103 87 6 0 119 205 19 105 4.21e-55 171
Msa0497140 MtrunA17_Chr5g0448421 45.972 211 81 8 18 201 70 274 1.72e-45 152
Msa0497140 MtrunA17_Chr5g0448411 45.972 211 81 8 18 201 68 272 3.15e-45 151
Msa0497140 MtrunA17_Chr6g0462031 39.623 212 98 6 3 201 44 238 1.63e-38 132
Msa0497140 MtrunA17_Chr1g0157481 36.792 212 102 8 15 202 125 328 8.77e-31 115
Msa0497140 MtrunA17_Chr6g0476641 37.129 202 103 5 15 203 91 281 2.22e-30 113
Msa0497140 MtrunA17_Chr2g0279001 37.629 194 91 6 15 185 73 259 3.81e-28 106
Msa0497140 MtrunA17_Chr6g0453141 34.694 196 104 5 15 195 66 252 7.88e-28 105
Msa0497140 MtrunA17_Chr6g0453151 34.694 196 104 5 15 195 133 319 1.44e-27 106
Msa0497140 MtrunA17_Chr6g0453181 34.184 196 105 5 15 195 66 252 1.89e-27 104
Msa0497140 MtrunA17_Chr4g0051941 34.184 196 105 5 15 195 67 253 2.46e-27 104
Msa0497140 MtrunA17_Chr6g0453161 34.694 196 104 5 15 195 68 254 3.01e-26 105
Msa0497140 MtrunA17_Chr6g0453161 34.184 196 105 5 15 195 333 519 3.67e-26 104
Msa0497140 MtrunA17_Chr5g0447531 33.333 201 100 6 15 195 66 252 1.88e-25 99.8
Msa0497140 MtrunA17_Chr4g0006181 31.984 247 86 6 15 202 122 345 3.51e-25 100
Msa0497140 MtrunA17_Chr2g0318521 35.961 203 94 7 15 195 63 251 1.87e-24 97.1
Msa0497140 MtrunA17_Chr6g0480171 86.486 37 5 0 169 205 29 65 1.88e-17 73.2
Msa0497140 MtrunA17_Chr6g0464511 32.432 185 89 6 15 195 47 199 3.19e-16 73.9
Msa0497140 MtrunA17_Chr6g0453171 51.429 70 27 2 130 192 13 82 2.89e-13 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0497140 AT3G47470.1 75.299 251 13 2 1 202 1 251 2.47e-131 369
Msa0497140 AT3G61470.1 55.670 194 80 2 15 202 62 255 5.19e-70 214
Msa0497140 AT1G45474.2 51.531 196 86 4 15 201 56 251 1.21e-61 192
Msa0497140 AT1G45474.1 51.531 196 86 4 15 201 56 251 1.21e-61 192
Msa0497140 AT1G19150.1 48.454 194 94 1 15 202 75 268 1.31e-61 193
Msa0497140 AT1G61520.2 44.954 218 87 9 12 202 5 216 8.78e-45 148
Msa0497140 AT1G61520.3 45.972 211 81 9 18 201 66 270 2.50e-44 149
Msa0497140 AT1G61520.1 45.972 211 81 9 18 201 66 270 2.50e-44 149
Msa0497140 AT3G54890.1 40.609 197 87 6 14 197 54 233 1.32e-38 133
Msa0497140 AT2G05070.1 34.328 201 98 6 15 195 66 252 3.95e-28 107
Msa0497140 AT2G05100.1 34.328 201 98 6 15 195 66 252 4.73e-28 106
Msa0497140 AT4G10340.1 36.620 213 105 8 12 203 69 272 1.15e-27 106
Msa0497140 AT1G76570.1 36.967 211 101 8 15 201 123 325 1.67e-27 106
Msa0497140 AT1G29930.1 33.679 193 111 4 15 195 67 254 2.32e-27 105
Msa0497140 AT1G29920.1 33.679 193 111 4 15 195 67 254 2.37e-27 105
Msa0497140 AT1G29910.1 33.679 193 111 4 15 195 67 254 2.37e-27 105
Msa0497140 AT3G27690.1 33.831 201 99 6 15 195 67 253 2.64e-27 104
Msa0497140 AT2G34430.1 33.679 193 111 4 15 195 66 253 2.69e-27 104
Msa0497140 AT2G34420.1 33.679 193 111 4 15 195 65 252 2.72e-27 104
Msa0497140 AT3G54890.2 34.197 193 71 4 14 197 54 199 3.42e-27 103
Msa0497140 AT3G27690.2 33.831 201 99 6 15 195 99 285 6.21e-27 104
Msa0497140 AT1G15820.1 36.082 194 94 8 15 185 70 256 1.78e-25 99.8
Msa0497140 AT5G01530.1 31.984 247 86 6 15 202 65 288 2.18e-25 100
Msa0497140 AT5G54270.1 36.634 202 102 6 11 195 60 252 3.37e-25 99.4
Msa0497140 AT3G08940.2 32.389 247 85 8 15 202 62 285 1.18e-24 98.2
Msa0497140 AT5G28450.1 50.495 101 44 3 108 202 71 171 4.77e-23 91.3
Msa0497140 AT3G54890.4 36.250 160 73 5 14 161 54 196 2.47e-21 87.8
Msa0497140 AT2G05100.2 32.447 188 93 6 15 182 66 239 1.11e-19 85.5
Msa0497140 AT2G40100.1 30.667 225 75 6 15 181 66 267 8.23e-18 79.7
Msa0497140 AT3G54890.3 37.500 104 56 3 14 108 54 157 8.03e-14 67.0

Find 100 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATTACAATTCTTTGAATT+TGG 0.078928 3_4:+29390713 Msa0497140:three_prime_UTR
TTCCCTGCATCATACCATTT+TGG 0.201569 3_4:-29389817 None:intergenic
CTTTCAAAATTCATCCATTC+AGG 0.215050 3_4:-29390586 None:intergenic
AAACCTAGTTTCCCTTAAAA+AGG 0.234455 3_4:+29391118 Msa0497140:three_prime_UTR
TGGTAATTTAATGTAGAAAA+TGG 0.245998 3_4:-29391027 None:intergenic
ATTGGCAATGTTGGCATTCT+TGG 0.255174 3_4:+29390400 Msa0497140:CDS
CAAACCACATGGCCGGAAAA+TGG 0.281257 3_4:-29388528 None:intergenic
TATTACAATTCTTTGAATTT+GGG 0.297339 3_4:+29390714 Msa0497140:three_prime_UTR
CCAATGTTGGTGAAGACTTC+GGG 0.301117 3_4:-29389781 None:intergenic
GTTCCTCTGTACATAGAAAT+AGG 0.308373 3_4:-29390633 None:intergenic
AACATAGGCTTTCATGTCAT+TGG 0.323632 3_4:-29390550 None:intergenic
AATCTGAGTAGACCTATATA+AGG 0.336985 3_4:-29391194 None:intergenic
GAATCATCAACGTTCCAAAA+TGG 0.352591 3_4:+29389803 Msa0497140:CDS
GGCCATGTGGTTTGAAATCA+AGG 0.359010 3_4:+29388537 Msa0497140:CDS
TGGGCTATGTTAGGTGTTGC+AGG 0.363791 3_4:+29389748 Msa0497140:CDS
TTTGAACTTTGCACCAACTT+TGG 0.369100 3_4:+29390020 Msa0497140:CDS
TGAAACAGTTCTCTATCGTT+AGG 0.379493 3_4:+29390758 Msa0497140:three_prime_UTR
ACAAACCACTTCAAGTTCTC+TGG 0.381297 3_4:-29389700 None:intergenic
TCAAATGTTTGCAGGGAGAT+TGG 0.385168 3_4:+29390382 Msa0497140:intron
TTGGCAATGTTGGCATTCTT+GGG 0.393741 3_4:+29390401 Msa0497140:CDS
GAGATATAGTAATGAGATAT+AGG 0.394693 3_4:-29390973 None:intergenic
TGTTGCGCTATTAGTCTTCC+CGG 0.394976 3_4:+29389640 Msa0497140:intron
ATTTGAACCGTGACTTTCAA+TGG 0.407460 3_4:+29390862 Msa0497140:three_prime_UTR
CGATAGAGAACTGTTTCAAA+AGG 0.419396 3_4:-29390753 None:intergenic
ATTGCTTGAAGATAGGATCT+TGG 0.434539 3_4:-29389948 None:intergenic
TGGATCGAATCCGTTGTCTC+CGG 0.445088 3_4:-29389659 None:intergenic
GTCATTCAGCACAATGTGAC+AGG 0.452299 3_4:+29390428 Msa0497140:CDS
AAACTAGGTTTCTCCATGCT+TGG 0.454898 3_4:-29391106 None:intergenic
CAGCACAATGTGACAGGAAA+AGG 0.457752 3_4:+29390434 Msa0497140:CDS
CGGTTCAAATGCTCAGTCCT+AGG 0.458778 3_4:-29390849 None:intergenic
TCCAATGTTGGTGAAGACTT+CGG 0.460365 3_4:-29389782 None:intergenic
AAATTACCAACTTGGTTCAC+AGG 0.463934 3_4:+29391041 Msa0497140:three_prime_UTR
TTCTCTTTAGCCTCCAAAGT+TGG 0.464702 3_4:-29390033 None:intergenic
GAAACAGTTCTCTATCGTTA+GGG 0.464877 3_4:+29390759 Msa0497140:three_prime_UTR
GGATCGAATCCGTTGTCTCC+GGG 0.465013 3_4:-29389658 None:intergenic
GAACTTTGCACCAACTTTGG+AGG 0.467219 3_4:+29390023 Msa0497140:CDS
ATCTTCTAATCTCGACGTAA+TGG 0.468668 3_4:-29389894 None:intergenic
AAGCTGTATTGCTTGAAGAT+AGG 0.474202 3_4:-29389955 None:intergenic
GGGTAACCAACCTCACCCTT+TGG 0.479854 3_4:-29389979 None:intergenic
AATGGACGTTGGGCTATGTT+AGG 0.483699 3_4:+29389739 Msa0497140:CDS
AAAGTTGGTGCAAAGTTCAA+AGG 0.485442 3_4:-29390018 None:intergenic
TGCAGGGAGATTGGCAATGT+TGG 0.487632 3_4:+29390391 Msa0497140:intron
CCCGAAGTCTTCACCAACAT+TGG 0.487971 3_4:+29389781 Msa0497140:CDS
GTTCAAGCTGAGCTTGTGAA+TGG 0.488750 3_4:+29389721 Msa0497140:CDS
GATAGAGAACTGTTTCAAAA+GGG 0.495143 3_4:-29390752 None:intergenic
GGATTACATTAGAATAACAT+AGG 0.495974 3_4:-29390565 None:intergenic
AAAGAGAAGGAAATTGCTAA+TGG 0.501630 3_4:+29390048 Msa0497140:CDS
AGCTTGCCAAAGGGTGAGGT+TGG 0.502406 3_4:+29389973 Msa0497140:CDS
ATCTGAGTAGACCTATATAA+GGG 0.502744 3_4:-29391193 None:intergenic
AGACAACGGATTCGATCCAT+TGG 0.505395 3_4:+29389663 Msa0497140:CDS
GTTCCAAAATGGTATGATGC+AGG 0.505984 3_4:+29389814 Msa0497140:CDS
TTTGATCCTGTGAACCAAGT+TGG 0.514498 3_4:-29391047 None:intergenic
GAACAATAGTGTTGTGCCAT+GGG 0.519149 3_4:-29390490 None:intergenic
TCTACATTAAATTACCAACT+TGG 0.520354 3_4:+29391033 Msa0497140:three_prime_UTR
AAGTTGGTGCAAAGTTCAAA+GGG 0.525813 3_4:-29390017 None:intergenic
GGATCTTGGTTAACACTACC+AGG 0.527012 3_4:-29389934 None:intergenic
AACGTTGATGATTCCAATGT+TGG 0.527016 3_4:-29389794 None:intergenic
TGCAGCACCTTTCAGACCCA+TGG 0.527064 3_4:+29390474 Msa0497140:CDS
TATTCTAATGTAATCCTGAA+TGG 0.532739 3_4:+29390572 Msa0497140:three_prime_UTR
AAGGGTGAGGTTGGTTACCC+CGG 0.533098 3_4:+29389982 Msa0497140:CDS
TTGATTTCAAACCACATGGC+CGG 0.533466 3_4:-29388535 None:intergenic
GGATCCTCGGCTAGTCCCAA+TGG 0.534357 3_4:-29389679 None:intergenic
AACACATCTCGCTCCAAGCA+TGG 0.534833 3_4:+29391093 Msa0497140:three_prime_UTR
TGAGCTTGTGAATGGACGTT+GGG 0.536014 3_4:+29389729 Msa0497140:CDS
CTTCAAGTTCTCTGGATCCT+CGG 0.540375 3_4:-29389692 None:intergenic
TGCTGCAAGAGGTTATCAAA+TGG 0.555368 3_4:-29390458 None:intergenic
ATACAGCTTGCCAAAGGGTG+AGG 0.558596 3_4:+29389969 Msa0497140:CDS
CTATGTACAGAGGAACTAAG+TGG 0.559926 3_4:+29390640 Msa0497140:three_prime_UTR
AAAATGGCTTTCTAAGTGGC+GGG 0.565209 3_4:-29390785 None:intergenic
ATTAGTCTTCCCGGAGACAA+CGG 0.567382 3_4:+29389649 Msa0497140:intron
CAAGCAATACAGCTTGCCAA+AGG 0.568836 3_4:+29389963 Msa0497140:CDS
ATTACGTCGAGATTAGAAGA+TGG 0.573199 3_4:+29389896 Msa0497140:CDS
AAGCAATACAGCTTGCCAAA+GGG 0.573830 3_4:+29389964 Msa0497140:CDS
TGAACAATAGTGTTGTGCCA+TGG 0.575513 3_4:-29390491 None:intergenic
CTGAGCTTGTGAATGGACGT+TGG 0.578252 3_4:+29389728 Msa0497140:CDS
AACTTTGGAGGCTAAAGAGA+AGG 0.580248 3_4:+29390035 Msa0497140:CDS
ATGCTTGGAGCGAGATGTGT+TGG 0.580734 3_4:-29391091 None:intergenic
CTCGAGACTTCCTCATGCCT+AGG 0.582653 3_4:+29390832 Msa0497140:three_prime_UTR
GACAACGGATTCGATCCATT+GGG 0.589479 3_4:+29389664 Msa0497140:CDS
TTCCAAAATGGTATGATGCA+GGG 0.594456 3_4:+29389815 Msa0497140:CDS
CGATCCATTGGGACTAGCCG+AGG 0.601654 3_4:+29389675 Msa0497140:CDS
TGTTGTGCCATGGGTCTGAA+AGG 0.604426 3_4:-29390481 None:intergenic
GGGCTATGTTAGGTGTTGCA+GGG 0.612177 3_4:+29389749 Msa0497140:CDS
AACCTTGATTTCAAACCACA+TGG 0.619985 3_4:-29388539 None:intergenic
AGGATCCAGAGAACTTGAAG+TGG 0.633648 3_4:+29389695 Msa0497140:CDS
TGGCAAGACATTAAGAACCC+TGG 0.635088 3_4:+29389916 Msa0497140:CDS
TGTGTCTTGAGTATTAGCAA+TGG 0.636337 3_4:+29391143 Msa0497140:three_prime_UTR
CATGGCCACTGTTACTACAC+AGG 0.640157 3_4:+29388496 None:intergenic
GATCCTATTTCTATGTACAG+AGG 0.648589 3_4:+29390630 Msa0497140:three_prime_UTR
GGTCTGAAAGGTGCTGCAAG+AGG 0.650437 3_4:-29390469 None:intergenic
CAATGTTGGTGAAGACTTCG+GGG 0.658213 3_4:-29389780 None:intergenic
TTATGAAAACAAATTGACAA+CGG 0.660029 3_4:+29391347 Msa0497140:three_prime_UTR
AATGCTCAGTCCTAGGCATG+AGG 0.667162 3_4:-29390842 None:intergenic
GGTGAGGTTGGTTACCCCGG+TGG 0.669754 3_4:+29389985 Msa0497140:CDS
GATCTTGGTTAACACTACCA+GGG 0.677002 3_4:-29389933 None:intergenic
AGAAGCCTGTGTAGTAACAG+TGG 0.678873 3_4:-29388501 None:intergenic
CTCGTGGCCATTGAAAGTCA+CGG 0.685313 3_4:-29390869 None:intergenic
AGAGTCTACTGAGATACTCG+TGG 0.689010 3_4:-29390885 None:intergenic
ATTGTTCAAACACTGAGTGG+TGG 0.700611 3_4:+29390506 Msa0497140:CDS
ACTATTGTTCAAACACTGAG+TGG 0.708128 3_4:+29390503 Msa0497140:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTAAAAAATAAATA+TGG + chr3_4:29389017-29389036 Msa0497140:intron 0.0%
!!! ATATATTATTCAAAAGTATT+TGG + chr3_4:29389123-29389142 Msa0497140:intron 10.0%
!!! CTAAAATTATTTTAGAATTT+AGG + chr3_4:29390917-29390936 Msa0497140:three_prime_UTR 10.0%
!! AATTATGAATATAGTTGTTA+AGG + chr3_4:29389541-29389560 Msa0497140:intron 15.0%
!!! TCAAATTTGATTTGTTAATT+AGG - chr3_4:29390287-29390306 None:intergenic 15.0%
!! TATTACAATTCTTTGAATTT+GGG + chr3_4:29390714-29390733 Msa0497140:three_prime_UTR 15.0%
!!! AATTATTTTAGAATTTAGGT+TGG + chr3_4:29390921-29390940 Msa0497140:three_prime_UTR 15.0%
!!! TTGAATATTGATTTGTATCA+TGG - chr3_4:29388927-29388946 None:intergenic 20.0%
!! ATTGTCAATTAACACATTAA+AGG - chr3_4:29389209-29389228 None:intergenic 20.0%
!! AGCAATTTAAAAACTTGATA+GGG - chr3_4:29389291-29389310 None:intergenic 20.0%
!!! TTTGATTTGTTAATTAGGTA+TGG - chr3_4:29390282-29390301 None:intergenic 20.0%
!!! CAAATTTGATTGATTTCATA+AGG + chr3_4:29390298-29390317 Msa0497140:intron 20.0%
!! CTATTACAATTCTTTGAATT+TGG + chr3_4:29390713-29390732 Msa0497140:three_prime_UTR 20.0%
!! TGGTAATTTAATGTAGAAAA+TGG - chr3_4:29391030-29391049 None:intergenic 20.0%
!!! TGTTTTCATAAACTCTTTTT+AGG - chr3_4:29391338-29391357 None:intergenic 20.0%
!! TTATGAAAACAAATTGACAA+CGG + chr3_4:29391347-29391366 Msa0497140:three_prime_UTR 20.0%
! CAGCAATTTAAAAACTTGAT+AGG - chr3_4:29389292-29389311 None:intergenic 25.0%
! TATTATAGTCCTTAACATTG+AGG + chr3_4:29389321-29389340 Msa0497140:intron 25.0%
! ATTGACATCTTTGCTTAAAT+GGG + chr3_4:29390110-29390129 Msa0497140:intron 25.0%
! CTAAATTAGTCAACCTAAAT+TGG - chr3_4:29390217-29390236 None:intergenic 25.0%
! TCTTCTTGATTATGAAACTA+TGG + chr3_4:29390342-29390361 Msa0497140:intron 25.0%
! GGATTACATTAGAATAACAT+AGG - chr3_4:29390568-29390587 None:intergenic 25.0%
! TATTCTAATGTAATCCTGAA+TGG + chr3_4:29390572-29390591 Msa0497140:three_prime_UTR 25.0%
!!! ATGAATTTTGAAAGACATCT+GGG + chr3_4:29390595-29390614 Msa0497140:three_prime_UTR 25.0%
! GAGATATAGTAATGAGATAT+AGG - chr3_4:29390976-29390995 None:intergenic 25.0%
! TCTACATTAAATTACCAACT+TGG + chr3_4:29391033-29391052 Msa0497140:three_prime_UTR 25.0%
! AATGGAAAAAATAGAAGTGA+AGG + chr3_4:29391161-29391180 Msa0497140:three_prime_UTR 25.0%
! ATGGAAAAAATAGAAGTGAA+GGG + chr3_4:29391162-29391181 Msa0497140:three_prime_UTR 25.0%
! TTTAAGGTTGAAGCTAAGAA+AGG + chr3_4:29388635-29388654 Msa0497140:intron 30.0%
TGTTGATGTTATATCGATGT+AGG + chr3_4:29388849-29388868 Msa0497140:intron 30.0%
TTGTTGAATAATCAAACTCG+AGG - chr3_4:29389153-29389172 None:intergenic 30.0%
AGTGAACAACTCAATTTAGT+GGG - chr3_4:29389240-29389259 None:intergenic 30.0%
TAATTGTGACCTCAATGTTA+AGG - chr3_4:29389333-29389352 None:intergenic 30.0%
!!! TAGTTTTTTCTGGTAGATCT+GGG - chr3_4:29389379-29389398 None:intergenic 30.0%
!!! ATAGTTTTTTCTGGTAGATC+TGG - chr3_4:29389380-29389399 None:intergenic 30.0%
ACCAGAAAAAACTATGTTAG+AGG + chr3_4:29389385-29389404 Msa0497140:intron 30.0%
!!! TCCTCTAACATAGTTTTTTC+TGG - chr3_4:29389389-29389408 None:intergenic 30.0%
AAAGAGAAGGAAATTGCTAA+TGG + chr3_4:29390048-29390067 Msa0497140:CDS 30.0%
CATTGACATCTTTGCTTAAA+TGG + chr3_4:29390109-29390128 Msa0497140:intron 30.0%
TGTGTATTTCAAATGTTTGC+AGG + chr3_4:29390374-29390393 Msa0497140:intron 30.0%
GTGTATTTCAAATGTTTGCA+GGG + chr3_4:29390375-29390394 Msa0497140:intron 30.0%
CTTTCAAAATTCATCCATTC+AGG - chr3_4:29390589-29390608 None:intergenic 30.0%
!! GATGAATTTTGAAAGACATC+TGG + chr3_4:29390594-29390613 Msa0497140:three_prime_UTR 30.0%
GATAGAGAACTGTTTCAAAA+GGG - chr3_4:29390755-29390774 None:intergenic 30.0%
GATGAGATATGTTCCAAAAA+TGG - chr3_4:29390804-29390823 None:intergenic 30.0%
AAACCTAGTTTCCCTTAAAA+AGG + chr3_4:29391118-29391137 Msa0497140:three_prime_UTR 30.0%
TGGAAAAAATAGAAGTGAAG+GGG + chr3_4:29391163-29391182 Msa0497140:three_prime_UTR 30.0%
ATCTGAGTAGACCTATATAA+GGG - chr3_4:29391196-29391215 None:intergenic 30.0%
AATCTGAGTAGACCTATATA+AGG - chr3_4:29391197-29391216 None:intergenic 30.0%
AACCTTGATTTCAAACCACA+TGG - chr3_4:29388542-29388561 None:intergenic 35.0%
TTGAAATCAAGGTTCCTTAC+TGG + chr3_4:29388548-29388567 Msa0497140:intron 35.0%
! TTCACCTTCTGCTTCTTTTA+AGG + chr3_4:29388619-29388638 Msa0497140:intron 35.0%
TCAACCTTAAAAGAAGCAGA+AGG - chr3_4:29388626-29388645 None:intergenic 35.0%
ACTAATGTCTACGTGTCTAT+AGG - chr3_4:29388789-29388808 None:intergenic 35.0%
GAGTGAACAACTCAATTTAG+TGG - chr3_4:29389241-29389260 None:intergenic 35.0%
GAGGAATCATCACTAACTAT+AGG + chr3_4:29389404-29389423 Msa0497140:intron 35.0%
TCTATACGAACTCATGCTTT+GGG - chr3_4:29389435-29389454 None:intergenic 35.0%
CACAATCGTGTTTCAATTTG+CGG - chr3_4:29389510-29389529 None:intergenic 35.0%
!! AACGTTGATGATTCCAATGT+TGG - chr3_4:29389797-29389816 None:intergenic 35.0%
GAATCATCAACGTTCCAAAA+TGG + chr3_4:29389803-29389822 Msa0497140:CDS 35.0%
TTCCAAAATGGTATGATGCA+GGG + chr3_4:29389815-29389834 Msa0497140:CDS 35.0%
ATCTTCTAATCTCGACGTAA+TGG - chr3_4:29389897-29389916 None:intergenic 35.0%
ATTACGTCGAGATTAGAAGA+TGG + chr3_4:29389896-29389915 Msa0497140:CDS 35.0%
ATTGCTTGAAGATAGGATCT+TGG - chr3_4:29389951-29389970 None:intergenic 35.0%
AAGCTGTATTGCTTGAAGAT+AGG - chr3_4:29389958-29389977 None:intergenic 35.0%
AAAGGGTTAAAAATTCCACC+GGG - chr3_4:29390003-29390022 None:intergenic 35.0%
CAAAGGGTTAAAAATTCCAC+CGG - chr3_4:29390004-29390023 None:intergenic 35.0%
!! AAGTTGGTGCAAAGTTCAAA+GGG - chr3_4:29390020-29390039 None:intergenic 35.0%
!! AAAGTTGGTGCAAAGTTCAA+AGG - chr3_4:29390021-29390040 None:intergenic 35.0%
TTTGAACTTTGCACCAACTT+TGG + chr3_4:29390020-29390039 Msa0497140:CDS 35.0%
ATCTTTGCTTAAATGGGACA+TGG + chr3_4:29390116-29390135 Msa0497140:intron 35.0%
TCTTTGCTTAAATGGGACAT+GGG + chr3_4:29390117-29390136 Msa0497140:intron 35.0%
ACTATTGTTCAAACACTGAG+TGG + chr3_4:29390503-29390522 Msa0497140:CDS 35.0%
AACATAGGCTTTCATGTCAT+TGG - chr3_4:29390553-29390572 None:intergenic 35.0%
!! GATCCTATTTCTATGTACAG+AGG + chr3_4:29390630-29390649 Msa0497140:three_prime_UTR 35.0%
GTTCCTCTGTACATAGAAAT+AGG - chr3_4:29390636-29390655 None:intergenic 35.0%
CGATAGAGAACTGTTTCAAA+AGG - chr3_4:29390756-29390775 None:intergenic 35.0%
TGAAACAGTTCTCTATCGTT+AGG + chr3_4:29390758-29390777 Msa0497140:three_prime_UTR 35.0%
GAAACAGTTCTCTATCGTTA+GGG + chr3_4:29390759-29390778 Msa0497140:three_prime_UTR 35.0%
AAAAATGGCTTTCTAAGTGG+CGG - chr3_4:29390789-29390808 None:intergenic 35.0%
TCCAAAAATGGCTTTCTAAG+TGG - chr3_4:29390792-29390811 None:intergenic 35.0%
ATTTGAACCGTGACTTTCAA+TGG + chr3_4:29390862-29390881 Msa0497140:three_prime_UTR 35.0%
AAATTACCAACTTGGTTCAC+AGG + chr3_4:29391041-29391060 Msa0497140:three_prime_UTR 35.0%
!! AGACCTTTTTAAGGGAAACT+AGG - chr3_4:29391124-29391143 None:intergenic 35.0%
! CAAGACACAGACCTTTTTAA+GGG - chr3_4:29391132-29391151 None:intergenic 35.0%
! TCAAGACACAGACCTTTTTA+AGG - chr3_4:29391133-29391152 None:intergenic 35.0%
TGTGTCTTGAGTATTAGCAA+TGG + chr3_4:29391143-29391162 Msa0497140:three_prime_UTR 35.0%
GGAAAAAATAGAAGTGAAGG+GGG + chr3_4:29391164-29391183 Msa0497140:three_prime_UTR 35.0%
TTGATTTCAAACCACATGGC+CGG - chr3_4:29388538-29388557 None:intergenic 40.0%
ACTTACCAGAAGAACCAGTA+AGG - chr3_4:29388565-29388584 None:intergenic 40.0%
! TGGTAAGTTGAACAGAGAAG+TGG + chr3_4:29388577-29388596 Msa0497140:intron 40.0%
TGAACAGAGAAGTGGCTATT+AGG + chr3_4:29388585-29388604 Msa0497140:intron 40.0%
TTGAAGCTAAGAAAGGAGAG+TGG + chr3_4:29388642-29388661 Msa0497140:intron 40.0%
! TATAGCTCTGCATAAGCTCA+AGG - chr3_4:29388954-29388973 None:intergenic 40.0%
GAGCTTATGCAGAGCTATAT+AGG + chr3_4:29388955-29388974 Msa0497140:intron 40.0%
!! GTTGTTCACTCTAAAGTAGC+TGG + chr3_4:29389250-29389269 Msa0497140:intron 40.0%
CTCTATACGAACTCATGCTT+TGG - chr3_4:29389436-29389455 None:intergenic 40.0%
CAAAGCATGAGTTCGTATAG+AGG + chr3_4:29389434-29389453 Msa0497140:intron 40.0%
! ACAAACCACTTCAAGTTCTC+TGG - chr3_4:29389703-29389722 None:intergenic 40.0%
! TCCAATGTTGGTGAAGACTT+CGG - chr3_4:29389785-29389804 None:intergenic 40.0%
GTTCCAAAATGGTATGATGC+AGG + chr3_4:29389814-29389833 Msa0497140:CDS 40.0%
! TTCCCTGCATCATACCATTT+TGG - chr3_4:29389820-29389839 None:intergenic 40.0%
GATCTTGGTTAACACTACCA+GGG - chr3_4:29389936-29389955 None:intergenic 40.0%
AAGCAATACAGCTTGCCAAA+GGG + chr3_4:29389964-29389983 Msa0497140:CDS 40.0%
AAGGGTTAAAAATTCCACCG+GGG - chr3_4:29390002-29390021 None:intergenic 40.0%
TTCTCTTTAGCCTCCAAAGT+TGG - chr3_4:29390036-29390055 None:intergenic 40.0%
! AACTTTGGAGGCTAAAGAGA+AGG + chr3_4:29390035-29390054 Msa0497140:CDS 40.0%
AGATGTCAATGCAGCATTTC+AGG - chr3_4:29390100-29390119 None:intergenic 40.0%
TAGTCAACCTAAATTGGCAC+CGG - chr3_4:29390211-29390230 None:intergenic 40.0%
TCAAATGTTTGCAGGGAGAT+TGG + chr3_4:29390382-29390401 Msa0497140:intron 40.0%
ATTGGCAATGTTGGCATTCT+TGG + chr3_4:29390400-29390419 Msa0497140:CDS 40.0%
TTGGCAATGTTGGCATTCTT+GGG + chr3_4:29390401-29390420 Msa0497140:CDS 40.0%
TGCTGCAAGAGGTTATCAAA+TGG - chr3_4:29390461-29390480 None:intergenic 40.0%
GAACAATAGTGTTGTGCCAT+GGG - chr3_4:29390493-29390512 None:intergenic 40.0%
TGAACAATAGTGTTGTGCCA+TGG - chr3_4:29390494-29390513 None:intergenic 40.0%
ATTGTTCAAACACTGAGTGG+TGG + chr3_4:29390506-29390525 Msa0497140:CDS 40.0%
CTATGTACAGAGGAACTAAG+TGG + chr3_4:29390640-29390659 Msa0497140:three_prime_UTR 40.0%
AAAATGGCTTTCTAAGTGGC+GGG - chr3_4:29390788-29390807 None:intergenic 40.0%
!! GCCACTTAGAAAGCCATTTT+TGG + chr3_4:29390788-29390807 Msa0497140:three_prime_UTR 40.0%
TTTGATCCTGTGAACCAAGT+TGG - chr3_4:29391050-29391069 None:intergenic 40.0%
AAACTAGGTTTCTCCATGCT+TGG - chr3_4:29391109-29391128 None:intergenic 40.0%
AGAAGCCTGTGTAGTAACAG+TGG - chr3_4:29388504-29388523 None:intergenic 45.0%
! GGCCATGTGGTTTGAAATCA+AGG + chr3_4:29388537-29388556 Msa0497140:CDS 45.0%
!! AGGTTCCTTACTGGTTCTTC+TGG + chr3_4:29388557-29388576 Msa0497140:intron 45.0%
AGAAGTGGCTATTAGGCCAA+TGG + chr3_4:29388592-29388611 Msa0497140:intron 45.0%
GAAGTGGCTATTAGGCCAAT+GGG + chr3_4:29388593-29388612 Msa0497140:intron 45.0%
AAGTGGCTATTAGGCCAATG+GGG + chr3_4:29388594-29388613 Msa0497140:intron 45.0%
AAGAAAGGAGAGTGGTTACC+TGG + chr3_4:29388650-29388669 Msa0497140:intron 45.0%
! ATACGAACTCATGCTTTGGG+AGG - chr3_4:29389432-29389451 None:intergenic 45.0%
CTGCTAGACTCAATCAGAGT+TGG + chr3_4:29389474-29389493 Msa0497140:intron 45.0%
!! TGTTGCGCTATTAGTCTTCC+CGG + chr3_4:29389640-29389659 Msa0497140:intron 45.0%
!! ATTAGTCTTCCCGGAGACAA+CGG + chr3_4:29389649-29389668 Msa0497140:intron 45.0%
! AGACAACGGATTCGATCCAT+TGG + chr3_4:29389663-29389682 Msa0497140:CDS 45.0%
! GACAACGGATTCGATCCATT+GGG + chr3_4:29389664-29389683 Msa0497140:CDS 45.0%
! CTTCAAGTTCTCTGGATCCT+CGG - chr3_4:29389695-29389714 None:intergenic 45.0%
AGGATCCAGAGAACTTGAAG+TGG + chr3_4:29389695-29389714 Msa0497140:CDS 45.0%
GTTCAAGCTGAGCTTGTGAA+TGG + chr3_4:29389721-29389740 Msa0497140:CDS 45.0%
TGAGCTTGTGAATGGACGTT+GGG + chr3_4:29389729-29389748 Msa0497140:CDS 45.0%
AATGGACGTTGGGCTATGTT+AGG + chr3_4:29389739-29389758 Msa0497140:CDS 45.0%
! CAATGTTGGTGAAGACTTCG+GGG - chr3_4:29389783-29389802 None:intergenic 45.0%
! CCAATGTTGGTGAAGACTTC+GGG - chr3_4:29389784-29389803 None:intergenic 45.0%
TGGCAAGACATTAAGAACCC+TGG + chr3_4:29389916-29389935 Msa0497140:CDS 45.0%
GGATCTTGGTTAACACTACC+AGG - chr3_4:29389937-29389956 None:intergenic 45.0%
CAAGCAATACAGCTTGCCAA+AGG + chr3_4:29389963-29389982 Msa0497140:CDS 45.0%
GAACTTTGCACCAACTTTGG+AGG + chr3_4:29390023-29390042 Msa0497140:CDS 45.0%
TGCTTAAATGGGACATGGGT+TGG + chr3_4:29390121-29390140 Msa0497140:intron 45.0%
!! GTGGTATTAACTTGCGACCT+GGG + chr3_4:29390148-29390167 Msa0497140:intron 45.0%
TCGAACCTGAAACCTTAAGG+AGG - chr3_4:29390182-29390201 None:intergenic 45.0%
GCATCGAACCTGAAACCTTA+AGG - chr3_4:29390185-29390204 None:intergenic 45.0%
AGTCAACCTAAATTGGCACC+GGG - chr3_4:29390210-29390229 None:intergenic 45.0%
GTCATTCAGCACAATGTGAC+AGG + chr3_4:29390428-29390447 Msa0497140:CDS 45.0%
CAGCACAATGTGACAGGAAA+AGG + chr3_4:29390434-29390453 Msa0497140:CDS 45.0%
AGAGTCTACTGAGATACTCG+TGG - chr3_4:29390888-29390907 None:intergenic 45.0%
!! AGGCTTCTGCAGCCATTTTC+CGG + chr3_4:29388516-29388535 Msa0497140:CDS 50.0%
CAAACCACATGGCCGGAAAA+TGG - chr3_4:29388531-29388550 None:intergenic 50.0%
AGGAGAGTGGTTACCTGGTT+TGG + chr3_4:29388655-29388674 Msa0497140:intron 50.0%
!! TTACCTGGTTTGGCTTCTCC+AGG + chr3_4:29388665-29388684 Msa0497140:intron 50.0%
TAACCTGGAGAAGCCAAACC+AGG - chr3_4:29388671-29388690 None:intergenic 50.0%
GATTGACATACCTGCCAGTG+AGG - chr3_4:29388694-29388713 None:intergenic 50.0%
AGCTCTGCATAAGCTCAAGG+AGG - chr3_4:29388951-29388970 None:intergenic 50.0%
TGGATCGAATCCGTTGTCTC+CGG - chr3_4:29389662-29389681 None:intergenic 50.0%
CTGAGCTTGTGAATGGACGT+TGG + chr3_4:29389728-29389747 Msa0497140:CDS 50.0%
! TGGGCTATGTTAGGTGTTGC+AGG + chr3_4:29389748-29389767 Msa0497140:CDS 50.0%
! GGGCTATGTTAGGTGTTGCA+GGG + chr3_4:29389749-29389768 Msa0497140:CDS 50.0%
CCCGAAGTCTTCACCAACAT+TGG + chr3_4:29389781-29389800 Msa0497140:CDS 50.0%
ATACAGCTTGCCAAAGGGTG+AGG + chr3_4:29389969-29389988 Msa0497140:CDS 50.0%
GGTCGCAAGTTAATACCACC+AGG - chr3_4:29390147-29390166 None:intergenic 50.0%
!! GGTGGTATTAACTTGCGACC+TGG + chr3_4:29390147-29390166 Msa0497140:intron 50.0%
GTGCTCCTCCTTAAGGTTTC+AGG + chr3_4:29390174-29390193 Msa0497140:intron 50.0%
!! GTTTCAGGTTCGATGCTTCC+CGG + chr3_4:29390189-29390208 Msa0497140:intron 50.0%
! ATGCTTCCCGGTGCCAATTT+AGG + chr3_4:29390201-29390220 Msa0497140:intron 50.0%
TGCAGGGAGATTGGCAATGT+TGG + chr3_4:29390391-29390410 Msa0497140:intron 50.0%
TGTTGTGCCATGGGTCTGAA+AGG - chr3_4:29390484-29390503 None:intergenic 50.0%
AATGCTCAGTCCTAGGCATG+AGG - chr3_4:29390845-29390864 None:intergenic 50.0%
CGGTTCAAATGCTCAGTCCT+AGG - chr3_4:29390852-29390871 None:intergenic 50.0%
CTCGTGGCCATTGAAAGTCA+CGG - chr3_4:29390872-29390891 None:intergenic 50.0%
ATGCTTGGAGCGAGATGTGT+TGG - chr3_4:29391094-29391113 None:intergenic 50.0%
AACACATCTCGCTCCAAGCA+TGG + chr3_4:29391093-29391112 Msa0497140:three_prime_UTR 50.0%
GGGGGACTTGTCCCTTATAT+AGG + chr3_4:29391182-29391201 Msa0497140:three_prime_UTR 50.0%
GCAGAAGGTGAACACCCCAT+TGG - chr3_4:29388611-29388630 None:intergenic 55.0%
GCTTCTCCAGGTTACCTCAC+TGG + chr3_4:29388677-29388696 Msa0497140:intron 55.0%
TACCTGCCAGTGAGGTAACC+TGG - chr3_4:29388686-29388705 None:intergenic 55.0%
GGATCGAATCCGTTGTCTCC+GGG - chr3_4:29389661-29389680 None:intergenic 55.0%
AGCTTGCCAAAGGGTGAGGT+TGG + chr3_4:29389973-29389992 Msa0497140:CDS 55.0%
GGGTAACCAACCTCACCCTT+TGG - chr3_4:29389982-29390001 None:intergenic 55.0%
! AAGGGTGAGGTTGGTTACCC+CGG + chr3_4:29389982-29390001 Msa0497140:CDS 55.0%
!! AAATGGGACATGGGTTGGCC+TGG + chr3_4:29390126-29390145 Msa0497140:intron 55.0%
! TTAAGGAGGAGCACACTCCC+AGG - chr3_4:29390168-29390187 None:intergenic 55.0%
! TGGGAGTGTGCTCCTCCTTA+AGG + chr3_4:29390167-29390186 Msa0497140:intron 55.0%
!! GGTCTGAAAGGTGCTGCAAG+AGG - chr3_4:29390472-29390491 None:intergenic 55.0%
TGCAGCACCTTTCAGACCCA+TGG + chr3_4:29390474-29390493 Msa0497140:CDS 55.0%
CTCGAGACTTCCTCATGCCT+AGG + chr3_4:29390832-29390851 Msa0497140:three_prime_UTR 55.0%
!! GCAGCCATTTTCCGGCCATG+TGG + chr3_4:29388524-29388543 Msa0497140:CDS 60.0%
CTCCAGGTTACCTCACTGGC+AGG + chr3_4:29388681-29388700 Msa0497140:intron 60.0%
!! CGATCCATTGGGACTAGCCG+AGG + chr3_4:29389675-29389694 Msa0497140:CDS 60.0%
! GGATCCTCGGCTAGTCCCAA+TGG - chr3_4:29389682-29389701 None:intergenic 60.0%
! GGTGAGGTTGGTTACCCCGG+TGG + chr3_4:29389985-29390004 Msa0497140:CDS 65.0%
!! TGGGACATGGGTTGGCCTGG+TGG + chr3_4:29390129-29390148 Msa0497140:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 29388497 29391385 29388497 ID=Msa0497140;Name=Msa0497140
chr3_4 mRNA 29388497 29391385 29388497 ID=Msa0497140-mRNA-1;Parent=Msa0497140;Name=Msa0497140-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.5|0.66|1|1|1|3|850|205
chr3_4 exon 29388497 29388558 29388497 ID=Msa0497140-mRNA-1:exon:6747;Parent=Msa0497140-mRNA-1
chr3_4 exon 29389654 29390069 29389654 ID=Msa0497140-mRNA-1:exon:6748;Parent=Msa0497140-mRNA-1
chr3_4 exon 29390396 29391385 29390396 ID=Msa0497140-mRNA-1:exon:6749;Parent=Msa0497140-mRNA-1
chr3_4 CDS 29388497 29388558 29388497 ID=Msa0497140-mRNA-1:cds;Parent=Msa0497140-mRNA-1
chr3_4 CDS 29389654 29390069 29389654 ID=Msa0497140-mRNA-1:cds;Parent=Msa0497140-mRNA-1
chr3_4 CDS 29390396 29390535 29390396 ID=Msa0497140-mRNA-1:cds;Parent=Msa0497140-mRNA-1
chr3_4 three_prime_UTR 29390536 29391385 29390536 ID=Msa0497140-mRNA-1:three_prime_utr;Parent=Msa0497140-mRNA-1
Gene Sequence

>Msa0497140

ATGGCCACTGTTACTACACAGGCTTCTGCAGCCATTTTCCGGCCATGTGGTTTGAAATCAAGTCTTCCCGGAGACAACGGATTCGATCCATTGGGACTAGCCGAGGATCCAGAGAACTTGAAGTGGTTTGTTCAAGCTGAGCTTGTGAATGGACGTTGGGCTATGTTAGGTGTTGCAGGGATGTTACTCCCCGAAGTCTTCACCAACATTGGAATCATCAACGTTCCAAAATGGTATGATGCAGGGAAAGAAGAATATTTTGCTTCATCTTCAACACTCTTTGTGATCGAGTTCATTTTGTTCCATTACGTCGAGATTAGAAGATGGCAAGACATTAAGAACCCTGGTAGTGTTAACCAAGATCCTATCTTCAAGCAATACAGCTTGCCAAAGGGTGAGGTTGGTTACCCCGGTGGAATTTTTAACCCTTTGAACTTTGCACCAACTTTGGAGGCTAAAGAGAAGGAAATTGCTAATGGGAGATTGGCAATGTTGGCATTCTTGGGATTTGTCATTCAGCACAATGTGACAGGAAAAGGACCATTTGATAACCTCTTGCAGCACCTTTCAGACCCATGGCACAACACTATTGTTCAAACACTGAGTGGTGGCAACTAA

Protein sequence

>Msa0497140

MATVTTQASAAIFRPCGLKSSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTNIGIINVPKWYDAGKEEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFVIQHNVTGKGPFDNLLQHLSDPWHNTIVQTLSGGN*