AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0754020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0754020 MtrunA17_Chr5g0398281 96.825 315 10 0 1 315 1 315 0.0 625
Msa0754020 MtrunA17_Chr4g0057081 71.746 315 78 4 6 311 57 369 1.75e-157 444
Msa0754020 MtrunA17_Chr2g0328301 28.421 190 102 5 131 294 67 248 1.23e-13 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0754020 AT4G22890.1 74.823 282 69 2 34 315 45 324 4.55e-157 442
Msa0754020 AT4G22890.3 74.823 282 69 2 34 315 45 324 4.55e-157 442
Msa0754020 AT4G22890.5 74.113 282 69 1 34 315 45 322 5.82e-157 442
Msa0754020 AT4G22890.4 74.113 282 68 1 34 315 45 321 6.92e-157 441
Msa0754020 AT4G11960.1 69.304 316 88 5 6 315 1 313 1.57e-151 427
Msa0754020 AT4G11960.2 76.494 251 59 0 65 315 46 296 1.36e-145 412
Msa0754020 AT4G22890.2 74.806 258 63 2 34 291 45 300 2.43e-142 404
Msa0754020 AT5G59400.1 30.481 187 104 4 131 294 75 258 2.79e-14 72.4
Msa0754020 AT5G59400.2 30.539 167 93 3 131 274 75 241 1.74e-11 63.9

Find 118 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAATTTAGAAAATTAATTT+TGG 0.192244 5_2:-7624735 Msa0754020:five_prime_UTR
ACTGAAAACACCTCCTTCTT+TGG 0.198021 5_2:-7622141 Msa0754020:CDS
CTGCCGTTCCTTTCATTCTA+TGG 0.206904 5_2:-7622313 Msa0754020:CDS
TCTAACTGTTGACTATTTAA+AGG 0.225624 5_2:-7623092 Msa0754020:CDS
TATGTCATTCATTAGTTATT+AGG 0.244471 5_2:-7621323 Msa0754020:three_prime_UTR
ACTTCATTGCCTTTAACTAA+TGG 0.264836 5_2:+7621551 None:intergenic
CTTCTCACATTTGACTTTGT+TGG 0.266908 5_2:+7622086 None:intergenic
TGTTGATCGGAGGTGGCCTT+AGG 0.316920 5_2:+7624254 None:intergenic
CCGGCAACTGTGATTGCATT+AGG 0.339486 5_2:-7623052 Msa0754020:CDS
CATTGAAGGTGAATATTGTT+TGG 0.343763 5_2:+7624505 None:intergenic
ATTAATAAAGAATATTGTAT+TGG 0.352979 5_2:+7624441 None:intergenic
TGATCCTTTCATATATATCT+TGG 0.353922 5_2:-7624770 Msa0754020:five_prime_UTR
CCACCGGCGTTGAATTGAAT+TGG 0.358610 5_2:+7624317 None:intergenic
CCTCCCCTCTTCAGCTGGCA+AGG 0.379946 5_2:-7624122 Msa0754020:intron
CCTAATGCAATCACAGTTGC+CGG 0.384531 5_2:+7623052 None:intergenic
GTGGAGAATGTTGGTCTTGA+AGG 0.390699 5_2:+7624359 None:intergenic
AGCTAGTTCTTCTAATTATG+AGG 0.392610 5_2:+7624473 None:intergenic
CCTATTTGTGCTTTCCCCTA+AGG 0.397809 5_2:-7624270 Msa0754020:CDS
TTCTTCCTTGATGATGTGAC+TGG 0.398806 5_2:-7622523 Msa0754020:CDS
CTGAAAACACCTCCTTCTTT+GGG 0.404488 5_2:-7622140 Msa0754020:CDS
AATGTCAACCATTGGAGTTA+AGG 0.405085 5_2:+7621417 None:intergenic
AAGTAGTACATTAATTATAT+AGG 0.405494 5_2:-7624711 Msa0754020:five_prime_UTR
GCATCTATTGCTTATGTGTC+TGG 0.406902 5_2:-7623680 Msa0754020:CDS
AAAATGAAACTGAATGGTTC+TGG 0.407016 5_2:+7622347 None:intergenic
AACTCTTTATCACTCATGAT+TGG 0.413038 5_2:+7623653 None:intergenic
CCTTAGGGGAAAGCACAAAT+AGG 0.420342 5_2:+7624270 None:intergenic
ACTTATGCAGTACTTCCTTC+TGG 0.426241 5_2:+7621894 None:intergenic
TGAAACAAGAGGAGAAGAAA+GGG 0.435558 5_2:-7624586 Msa0754020:five_prime_UTR
GTTGATCGGAGGTGGCCTTA+GGG 0.446924 5_2:+7624255 None:intergenic
CTCACATTTGACTTTGTTGG+TGG 0.447601 5_2:+7622089 None:intergenic
TGAATTAAAACTGAAGCTAA+AGG 0.449191 5_2:-7623627 Msa0754020:intron
GTGAAACAAGAGGAGAAGAA+AGG 0.458754 5_2:-7624587 Msa0754020:five_prime_UTR
AATAAAGAATATTGTATTGG+TGG 0.461111 5_2:+7624444 None:intergenic
CTCTTCAGCTGGCAAGGTTG+AGG 0.463924 5_2:-7624116 Msa0754020:intron
TTAAGTTATCACGTGGGCAT+AGG 0.471446 5_2:+7624683 None:intergenic
TGAATAGGCATTCTACTATG+AGG 0.480147 5_2:-7623907 Msa0754020:intron
GACTAACGTGTGGAGGGACT+TGG 0.485270 5_2:+7624550 None:intergenic
TGCTCACTCTGGAACACCAT+TGG 0.491651 5_2:-7621523 Msa0754020:three_prime_UTR
GCACAAATAGGCCTCGGCGA+AGG 0.498171 5_2:+7624282 None:intergenic
GAAGGTGAATATTGTTTGGA+GGG 0.500548 5_2:+7624509 None:intergenic
CACAAATAGGCCTCGGCGAA+GGG 0.502204 5_2:+7624283 None:intergenic
TTGACATTAATTAACATACT+TGG 0.502422 5_2:-7621402 Msa0754020:three_prime_UTR
GAATATTGTATTGGTGGTGA+TGG 0.502433 5_2:+7624450 None:intergenic
CATTAATTAACATACTTGGT+AGG 0.506378 5_2:-7621398 Msa0754020:three_prime_UTR
AAGGGATGAGTGGCGGCCAC+CGG 0.508210 5_2:+7624301 None:intergenic
TTCTACTACGAAGACTGCAC+CGG 0.512099 5_2:+7623372 None:intergenic
AGAAGGGATTAGTTCTCCAT+TGG 0.513240 5_2:-7621642 Msa0754020:three_prime_UTR
TAAGTTATCACGTGGGCATA+GGG 0.513593 5_2:+7624684 None:intergenic
AAATTGTGGCAGAGGGTCCC+CGG 0.518295 5_2:-7623391 Msa0754020:CDS
AACATCAACATCAAAATCCT+AGG 0.518444 5_2:+7624631 None:intergenic
CATATCATTATTCATGAGAA+GGG 0.525309 5_2:-7621658 Msa0754020:three_prime_UTR
TGAGGGTATTCATTCATTGA+AGG 0.525774 5_2:+7624491 None:intergenic
ATGAGGATCCTTAACTCCAA+TGG 0.529643 5_2:-7621425 Msa0754020:three_prime_UTR
TGAAGGTGAATATTGTTTGG+AGG 0.533225 5_2:+7624508 None:intergenic
GGGAAAGCACAAATAGGCCT+CGG 0.534635 5_2:+7624276 None:intergenic
CAAGTCAAAATGAAACTGAA+TGG 0.534907 5_2:+7622341 None:intergenic
TTTGGAGGGAAACAAAGATA+AGG 0.535545 5_2:+7624523 None:intergenic
AAGGACTCTAGAAGCAGAAG+TGG 0.537690 5_2:+7624340 None:intergenic
AAGACCTTGTTGATCGGAGG+TGG 0.538161 5_2:+7624247 None:intergenic
CAAAGAAAGTATTACTACCT+AGG 0.538190 5_2:-7624648 Msa0754020:five_prime_UTR
CTGAAACAAACTTGTGGAGG+TGG 0.540197 5_2:+7621351 None:intergenic
TGTTAATTAATGTCAACCAT+TGG 0.541275 5_2:+7621409 None:intergenic
AGGGAGTGAAATTGTGGCAG+AGG 0.544360 5_2:-7623399 Msa0754020:CDS
GCATATCATTATTCATGAGA+AGG 0.544610 5_2:-7621659 Msa0754020:three_prime_UTR
GTAAATAGTTTCTCTACCAA+TGG 0.546890 5_2:+7621626 None:intergenic
GAATAGGCATTCTACTATGA+GGG 0.550131 5_2:-7623906 Msa0754020:intron
GGCATTCTACTATGAGGGAA+AGG 0.551864 5_2:-7623901 Msa0754020:CDS
TGACAATATAGTCCCAAAGA+AGG 0.552001 5_2:+7622128 None:intergenic
ACTATATTGTCAATTTCAAG+TGG 0.556328 5_2:-7622117 Msa0754020:CDS
TGAGCAAACCATAGAATGAA+AGG 0.563526 5_2:+7622305 None:intergenic
TTGATCGGAGGTGGCCTTAG+GGG 0.563797 5_2:+7624256 None:intergenic
TGGAGAATGTTGGTCTTGAA+GGG 0.565725 5_2:+7624360 None:intergenic
ATCAAATCAAGAAATTGTCA+AGG 0.566139 5_2:-7621578 Msa0754020:three_prime_UTR
GCTAGTTCTTCTAATTATGA+GGG 0.566882 5_2:+7624474 None:intergenic
GGCGCTCCTACTGAAAGTCC+CGG 0.568811 5_2:-7623071 Msa0754020:CDS
TGAAGTCATTATGCTCACTC+TGG 0.570854 5_2:-7621534 Msa0754020:three_prime_UTR
GTGCAGTCTTCGTAGTAGAA+AGG 0.571660 5_2:-7623369 Msa0754020:intron
ATCTCAAAGAAGAACTCATG+TGG 0.574149 5_2:-7623851 Msa0754020:CDS
CGGCGTTGAATTGAATTGGA+AGG 0.577025 5_2:+7624321 None:intergenic
CAAATCCAGTCACATCATCA+AGG 0.579365 5_2:+7622518 None:intergenic
AAAGGCAACTATGTCAAATG+AGG 0.583401 5_2:-7623883 Msa0754020:CDS
TAAGATAAGACCTTGTTGAT+CGG 0.583501 5_2:+7624241 None:intergenic
GGCAATGACTAACGTGTGGA+GGG 0.585025 5_2:+7624544 None:intergenic
TCTACTACGAAGACTGCACC+GGG 0.585139 5_2:+7623373 None:intergenic
CAGTTGCCGGGACTTTCAGT+AGG 0.588097 5_2:+7623065 None:intergenic
GATGGAAGGGAGTGAAATTG+TGG 0.591843 5_2:-7623405 Msa0754020:CDS
AAAGAAGAACTCATGTGGGA+AGG 0.595561 5_2:-7623846 Msa0754020:CDS
AGGAAGTACTGCATAAGTGA+AGG 0.596142 5_2:-7621889 Msa0754020:intron
CTAATGCAATCACAGTTGCC+GGG 0.598117 5_2:+7623053 None:intergenic
AGAAACTATTTACATGTGGA+AGG 0.598825 5_2:-7621616 Msa0754020:three_prime_UTR
CCAATTCAATTCAACGCCGG+TGG 0.602875 5_2:-7624317 Msa0754020:CDS
GAAGCAGAAGTGGAGAATGT+TGG 0.602926 5_2:+7624350 None:intergenic
CTTACCAAGATATATATGAA+AGG 0.608661 5_2:+7624766 None:intergenic
TAGGGGCCATGTCCTAATTG+TGG 0.612557 5_2:-7622165 Msa0754020:CDS
AGGCAATGACTAACGTGTGG+AGG 0.617445 5_2:+7624543 None:intergenic
AGCTAGCTGAAACAAACTTG+TGG 0.618916 5_2:+7621345 None:intergenic
GGCCTCGGCGAAGGGATGAG+TGG 0.619355 5_2:+7624291 None:intergenic
GGGAGTGAAATTGTGGCAGA+GGG 0.625703 5_2:-7623398 Msa0754020:CDS
AACAAACTTGTGGAGGTGGT+AGG 0.630843 5_2:+7621355 None:intergenic
GTAGAGAAACTATTTACATG+TGG 0.633798 5_2:-7621620 Msa0754020:three_prime_UTR
GTTATCACGTGGGCATAGGG+TGG 0.634616 5_2:+7624687 None:intergenic
TAGCTGAAACAAACTTGTGG+AGG 0.634851 5_2:+7621348 None:intergenic
TCAGTACCACAATTAGGACA+TGG 0.636619 5_2:+7622159 None:intergenic
CAATATAGTCCCAAAGAAGG+AGG 0.636916 5_2:+7622131 None:intergenic
TCTCAAAGAAGAACTCATGT+GGG 0.638689 5_2:-7623850 Msa0754020:CDS
AGATTGATTACATTGCCAGA+AGG 0.638843 5_2:-7621909 Msa0754020:CDS
CTTCCAATTCAATTCAACGC+CGG 0.639850 5_2:-7624320 Msa0754020:CDS
CTCGGCGAAGGGATGAGTGG+CGG 0.641648 5_2:+7624294 None:intergenic
GTATACACATATCAAGCCAA+TGG 0.641751 5_2:+7621507 None:intergenic
ATAACACACTCTCTCTAACA+TGG 0.645208 5_2:+7624792 None:intergenic
GATAAGACCTTGTTGATCGG+AGG 0.647194 5_2:+7624244 None:intergenic
ACGTGATAACTTAAAACATG+AGG 0.649341 5_2:-7624674 Msa0754020:five_prime_UTR
AAACCATAGAATGAAAGGAA+CGG 0.657593 5_2:+7622310 None:intergenic
CGCCACTCATCCCTTCGCCG+AGG 0.657673 5_2:-7624293 Msa0754020:CDS
ATAAGGCAATGACTAACGTG+TGG 0.667599 5_2:+7624540 None:intergenic
AAGGCCACCTCCGATCAACA+AGG 0.675926 5_2:-7624251 Msa0754020:intron
TGAGATCAACTATCTGATAG+CGG 0.690835 5_2:-7622497 Msa0754020:intron
CTACTACGAAGACTGCACCG+GGG 0.817900 5_2:+7623374 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATAAAGAATATTGTAT+TGG + chr5_2:7621625-7621644 None:intergenic 10.0%
!!! CTTTATATAATTTTGAAATA+TGG - chr5_2:7622544-7622563 Msa0754020:intron 10.0%
!!! AGATAGTTATTTTTAATTAT+AGG - chr5_2:7623879-7623898 Msa0754020:CDS 10.0%
!!! GATAGTTATTTTTAATTATA+GGG - chr5_2:7623880-7623899 Msa0754020:CDS 10.0%
!!! ATAGTTATTTTTAATTATAG+GGG - chr5_2:7623881-7623900 Msa0754020:CDS 10.0%
!! AATCAAATTAATATGATATA+TGG - chr5_2:7624061-7624080 Msa0754020:CDS 10.0%
!! AAGTAGTACATTAATTATAT+AGG - chr5_2:7621352-7621371 Msa0754020:three_prime_UTR 15.0%
!! TTCTGTTTATTATATTGAAT+AGG - chr5_2:7622141-7622160 Msa0754020:CDS 15.0%
!! CATAAAAGACATTAAATAAA+AGG - chr5_2:7622765-7622784 Msa0754020:intron 15.0%
!!! GTTTCTATTTTTACTTTAAT+CGG + chr5_2:7623334-7623353 None:intergenic 15.0%
!!! AATATATTTTACAGTATTCA+AGG + chr5_2:7624210-7624229 None:intergenic 15.0%
!! AATAAAGAATATTGTATTGG+TGG + chr5_2:7621622-7621641 None:intergenic 20.0%
!! TTATGACATTAACAATCTTT+AGG - chr5_2:7621847-7621866 Msa0754020:intron 20.0%
!! ATACTATTTGTTTCATTCAT+TGG - chr5_2:7621901-7621920 Msa0754020:CDS 20.0%
!! AATACATGAGTTTACAATAT+TGG - chr5_2:7622322-7622341 Msa0754020:CDS 20.0%
!!! ACTAATTAATACCCTTTTAT+AGG - chr5_2:7622938-7622957 Msa0754020:intron 20.0%
!!! AAAAGATTTCTTGATTTTGA+AGG - chr5_2:7623802-7623821 Msa0754020:intron 20.0%
!!! TTTTTGTAATTTATCTCTGT+TGG - chr5_2:7623830-7623849 Msa0754020:CDS 20.0%
!! ATGACTTAATAATGTACAAA+AGG + chr5_2:7624014-7624033 None:intergenic 20.0%
!! TTTATATCTCTAATACATAC+AGG - chr5_2:7624382-7624401 Msa0754020:CDS 20.0%
!!! TTTTGTTTTTTTGAGTTATG+AGG - chr5_2:7624621-7624640 Msa0754020:five_prime_UTR 20.0%
!! TTGACATTAATTAACATACT+TGG - chr5_2:7624661-7624680 Msa0754020:five_prime_UTR 20.0%
!! TATGTCATTCATTAGTTATT+AGG - chr5_2:7624740-7624759 Msa0754020:five_prime_UTR 20.0%
! TGATCCTTTCATATATATCT+TGG - chr5_2:7621293-7621312 Msa0754020:three_prime_UTR 25.0%
! CTTACCAAGATATATATGAA+AGG + chr5_2:7621300-7621319 None:intergenic 25.0%
! TTTGTTGAAAACTTAGTATC+CGG + chr5_2:7621873-7621892 None:intergenic 25.0%
! ATAACATTCACTGAAGTTAT+TGG + chr5_2:7622270-7622289 None:intergenic 25.0%
! TGAATTAAAACTGAAGCTAA+AGG - chr5_2:7622436-7622455 Msa0754020:intron 25.0%
!! GGTTTGATATTTTCATTTCA+TGG - chr5_2:7622457-7622476 Msa0754020:intron 25.0%
! ATATCTAATAAGAGCTTCAT+CGG - chr5_2:7622495-7622514 Msa0754020:intron 25.0%
! AATCCATATTGAATCACAAT+TGG + chr5_2:7622617-7622636 None:intergenic 25.0%
!! TTTCTCTTTTCTTTTACAGA+TGG - chr5_2:7622640-7622659 Msa0754020:intron 25.0%
! CTGAATTTCAGTATAAATAC+AGG + chr5_2:7622829-7622848 None:intergenic 25.0%
! TTATACTGAAATTCAGCTTA+AGG - chr5_2:7622833-7622852 Msa0754020:intron 25.0%
! AACATACATGAATCATTTCA+AGG + chr5_2:7622862-7622881 None:intergenic 25.0%
! ATCACTGTAAACCTATAAAA+GGG + chr5_2:7622952-7622971 None:intergenic 25.0%
!! TCTAACTGTTGACTATTTAA+AGG - chr5_2:7622971-7622990 Msa0754020:intron 25.0%
!! TTTTCAAAGAAATCAATGTC+TGG + chr5_2:7623115-7623134 None:intergenic 25.0%
!! GAGAACTATAAAGTCTTATA+TGG - chr5_2:7623149-7623168 Msa0754020:intron 25.0%
! AGTGTACTAGATTTATAACA+AGG + chr5_2:7623248-7623267 None:intergenic 25.0%
! ATTATCTGCTCTATAATATC+AGG - chr5_2:7623514-7623533 Msa0754020:intron 25.0%
! ATTCATCTAATGATTGCTAA+AGG - chr5_2:7623668-7623687 Msa0754020:CDS 25.0%
! AACTATCTTAGCATATGTAA+TGG + chr5_2:7623867-7623886 None:intergenic 25.0%
! ACTATATTGTCAATTTCAAG+TGG - chr5_2:7623946-7623965 Msa0754020:intron 25.0%
!! TATGTTGTAGCATAAACTTT+TGG - chr5_2:7624237-7624256 Msa0754020:intron 25.0%
!! TAGAAATTGGTTTACCTTAT+TGG + chr5_2:7624334-7624353 None:intergenic 25.0%
! TAGTTACACTAGTTAGAAAT+TGG + chr5_2:7624347-7624366 None:intergenic 25.0%
! CATATCATTATTCATGAGAA+GGG - chr5_2:7624405-7624424 Msa0754020:exon 25.0%
! ATCAAATCAAGAAATTGTCA+AGG - chr5_2:7624485-7624504 Msa0754020:five_prime_UTR 25.0%
! TGTTAATTAATGTCAACCAT+TGG + chr5_2:7624657-7624676 None:intergenic 25.0%
! CATTAATTAACATACTTGGT+AGG - chr5_2:7624665-7624684 Msa0754020:five_prime_UTR 25.0%
!!! CATGTTTTAAGTTATCACGT+GGG + chr5_2:7621389-7621408 None:intergenic 30.0%
!!! TCATGTTTTAAGTTATCACG+TGG + chr5_2:7621390-7621409 None:intergenic 30.0%
ACGTGATAACTTAAAACATG+AGG - chr5_2:7621389-7621408 Msa0754020:three_prime_UTR 30.0%
!! CAAAGAAAGTATTACTACCT+AGG - chr5_2:7621415-7621434 Msa0754020:three_prime_UTR 30.0%
AACATCAACATCAAAATCCT+AGG + chr5_2:7621435-7621454 None:intergenic 30.0%
GAAAAAGATAGTGAAACAAG+AGG - chr5_2:7621466-7621485 Msa0754020:three_prime_UTR 30.0%
CATTGAAGGTGAATATTGTT+TGG + chr5_2:7621561-7621580 None:intergenic 30.0%
! GCTAGTTCTTCTAATTATGA+GGG + chr5_2:7621592-7621611 None:intergenic 30.0%
! AGCTAGTTCTTCTAATTATG+AGG + chr5_2:7621593-7621612 None:intergenic 30.0%
CATCATCATCATCATCATAA+TGG - chr5_2:7621649-7621668 Msa0754020:three_prime_UTR 30.0%
TAAGATAAGACCTTGTTGAT+CGG + chr5_2:7621825-7621844 None:intergenic 30.0%
! TTTTTGTCTATGCTGCAATA+TGG + chr5_2:7622002-7622021 None:intergenic 30.0%
AAAAAAGAGAAGAAGTCACT+TGG - chr5_2:7622017-7622036 Msa0754020:intron 30.0%
! ACAGAACATATGATAATGAG+AGG + chr5_2:7622093-7622112 None:intergenic 30.0%
! ACAATATTGGTTATTTGTGC+AGG - chr5_2:7622335-7622354 Msa0754020:CDS 30.0%
TTCTTCTGAGCAAAAATTTC+TGG - chr5_2:7622358-7622377 Msa0754020:intron 30.0%
AACTCTTTATCACTCATGAT+TGG + chr5_2:7622413-7622432 None:intergenic 30.0%
GTACCAATTGTGATTCAATA+TGG - chr5_2:7622611-7622630 Msa0754020:intron 30.0%
! TCTTTTCTTTTACAGATGGA+AGG - chr5_2:7622644-7622663 Msa0754020:intron 30.0%
! CTTTTCTTTTACAGATGGAA+GGG - chr5_2:7622645-7622664 Msa0754020:intron 30.0%
ATGCAAATGCTCATAAACAA+TGG + chr5_2:7622745-7622764 None:intergenic 30.0%
GATCACTGTAAACCTATAAA+AGG + chr5_2:7622953-7622972 None:intergenic 30.0%
AGTTCATGTTGCATTTGATT+TGG - chr5_2:7623074-7623093 Msa0754020:CDS 30.0%
TAGAACAACAAATAATGCAG+AGG - chr5_2:7623180-7623199 Msa0754020:intron 30.0%
AGAACAACAAATAATGCAGA+GGG - chr5_2:7623181-7623200 Msa0754020:intron 30.0%
! GTATGTGTTGTTAAGCTATT+GGG + chr5_2:7623312-7623331 None:intergenic 30.0%
!!! CTCAAGTCTTTTTTCAAAAC+TGG + chr5_2:7623379-7623398 None:intergenic 30.0%
TTGAAAAAAGACTTGAGACA+AGG - chr5_2:7623382-7623401 Msa0754020:CDS 30.0%
ATAGAGCAGATAATAAACAG+AGG + chr5_2:7623508-7623527 None:intergenic 30.0%
TCTAAATAAGCAATTAGCGA+TGG + chr5_2:7623615-7623634 None:intergenic 30.0%
AAAATGAAACTGAATGGTTC+TGG + chr5_2:7623719-7623738 None:intergenic 30.0%
CAAGTCAAAATGAAACTGAA+TGG + chr5_2:7623725-7623744 None:intergenic 30.0%
!!! CATTCAGTTTCATTTTGACT+TGG - chr5_2:7623723-7623742 Msa0754020:intron 30.0%
AAACCATAGAATGAAAGGAA+CGG + chr5_2:7623756-7623775 None:intergenic 30.0%
!!! TGTGAACTTTTTCATAGACA+AGG - chr5_2:7624262-7624281 Msa0754020:CDS 30.0%
AACACAGTGTATAACCAATA+AGG - chr5_2:7624317-7624336 Msa0754020:CDS 30.0%
GCATATCATTATTCATGAGA+AGG - chr5_2:7624404-7624423 Msa0754020:exon 30.0%
GTAAATAGTTTCTCTACCAA+TGG + chr5_2:7624440-7624459 None:intergenic 30.0%
GTAGAGAAACTATTTACATG+TGG - chr5_2:7624443-7624462 Msa0754020:five_prime_UTR 30.0%
AGAAACTATTTACATGTGGA+AGG - chr5_2:7624447-7624466 Msa0754020:five_prime_UTR 30.0%
! CAAGGTTTTCCATTAGTTAA+AGG - chr5_2:7624503-7624522 Msa0754020:five_prime_UTR 30.0%
ACTTCATTGCCTTTAACTAA+TGG + chr5_2:7624515-7624534 None:intergenic 30.0%
ATAACACACTCTCTCTAACA+TGG + chr5_2:7621274-7621293 None:intergenic 35.0%
TGAAACAAGAGGAGAAGAAA+GGG - chr5_2:7621477-7621496 Msa0754020:three_prime_UTR 35.0%
TTTGGAGGGAAACAAAGATA+AGG + chr5_2:7621543-7621562 None:intergenic 35.0%
GAAGGTGAATATTGTTTGGA+GGG + chr5_2:7621557-7621576 None:intergenic 35.0%
TGAAGGTGAATATTGTTTGG+AGG + chr5_2:7621558-7621577 None:intergenic 35.0%
!! TGAGGGTATTCATTCATTGA+AGG + chr5_2:7621575-7621594 None:intergenic 35.0%
!! GAATATTGTATTGGTGGTGA+TGG + chr5_2:7621616-7621635 None:intergenic 35.0%
GACATTAACAATCTTTAGGC+CGG - chr5_2:7621851-7621870 Msa0754020:intron 35.0%
TGAATAGGCATTCTACTATG+AGG - chr5_2:7622156-7622175 Msa0754020:CDS 35.0%
GAATAGGCATTCTACTATGA+GGG - chr5_2:7622157-7622176 Msa0754020:CDS 35.0%
AAAGGCAACTATGTCAAATG+AGG - chr5_2:7622180-7622199 Msa0754020:intron 35.0%
ATCTCAAAGAAGAACTCATG+TGG - chr5_2:7622212-7622231 Msa0754020:intron 35.0%
TCTCAAAGAAGAACTCATGT+GGG - chr5_2:7622213-7622232 Msa0754020:intron 35.0%
!! AAGGTATCAAGTTGAATCTG+TGG - chr5_2:7622713-7622732 Msa0754020:intron 35.0%
TCAGTATAAATACAGGACAG+AGG + chr5_2:7622822-7622841 None:intergenic 35.0%
TCATGCACTCGATTAAAAGA+AGG + chr5_2:7623052-7623071 None:intergenic 35.0%
GTTCAATGGTTGGAACAAAT+TGG - chr5_2:7623206-7623225 Msa0754020:intron 35.0%
! GGTATGTGTTGTTAAGCTAT+TGG + chr5_2:7623313-7623332 None:intergenic 35.0%
ACTTGAGACAAGGTTTATCA+AGG - chr5_2:7623392-7623411 Msa0754020:CDS 35.0%
GTTTATCAAGGTCGATAGTA+GGG - chr5_2:7623404-7623423 Msa0754020:CDS 35.0%
TTAGATGAAACAGACCAGTT+TGG - chr5_2:7623470-7623489 Msa0754020:intron 35.0%
TAGATGAAACAGACCAGTTT+GGG - chr5_2:7623471-7623490 Msa0754020:intron 35.0%
TGAGATCAACTATCTGATAG+CGG - chr5_2:7623566-7623585 Msa0754020:intron 35.0%
TGAGCAAACCATAGAATGAA+AGG + chr5_2:7623761-7623780 None:intergenic 35.0%
! GTGTTTTCAGTACCACAATT+AGG + chr5_2:7623913-7623932 None:intergenic 35.0%
TGACAATATAGTCCCAAAGA+AGG + chr5_2:7623938-7623957 None:intergenic 35.0%
! CTTCTCACATTTGACTTTGT+TGG + chr5_2:7623980-7623999 None:intergenic 35.0%
AGATTGATTACATTGCCAGA+AGG - chr5_2:7624154-7624173 Msa0754020:intron 35.0%
GTATACACATATCAAGCCAA+TGG + chr5_2:7624559-7624578 None:intergenic 35.0%
AATGTCAACCATTGGAGTTA+AGG + chr5_2:7624649-7624668 None:intergenic 35.0%
TAAGTTATCACGTGGGCATA+GGG + chr5_2:7621382-7621401 None:intergenic 40.0%
TTAAGTTATCACGTGGGCAT+AGG + chr5_2:7621383-7621402 None:intergenic 40.0%
GTGAAACAAGAGGAGAAGAA+AGG - chr5_2:7621476-7621495 Msa0754020:three_prime_UTR 40.0%
ATAAGGCAATGACTAACGTG+TGG + chr5_2:7621526-7621545 None:intergenic 40.0%
!! TGGAGAATGTTGGTCTTGAA+GGG + chr5_2:7621706-7621725 None:intergenic 40.0%
CTTCCAATTCAATTCAACGC+CGG - chr5_2:7621743-7621762 Msa0754020:intron 40.0%
AAAGAAGAACTCATGTGGGA+AGG - chr5_2:7622217-7622236 Msa0754020:intron 40.0%
GCATCTATTGCTTATGTGTC+TGG - chr5_2:7622383-7622402 Msa0754020:intron 40.0%
CAATGGTTGGAACAAATTGG+AGG - chr5_2:7623209-7623228 Msa0754020:intron 40.0%
! CTAGTACACTCGCTTCATTT+TGG - chr5_2:7623258-7623277 Msa0754020:intron 40.0%
GGTTTATCAAGGTCGATAGT+AGG - chr5_2:7623403-7623422 Msa0754020:CDS 40.0%
!! TTCTTCCTTGATGATGTGAC+TGG - chr5_2:7623540-7623559 Msa0754020:intron 40.0%
CAAATCCAGTCACATCATCA+AGG + chr5_2:7623548-7623567 None:intergenic 40.0%
CAATTAGCGATGGTAGAACA+AGG + chr5_2:7623605-7623624 None:intergenic 40.0%
TCAGTACCACAATTAGGACA+TGG + chr5_2:7623907-7623926 None:intergenic 40.0%
ACTGAAAACACCTCCTTCTT+TGG - chr5_2:7623922-7623941 Msa0754020:intron 40.0%
CTGAAAACACCTCCTTCTTT+GGG - chr5_2:7623923-7623942 Msa0754020:intron 40.0%
CAATATAGTCCCAAAGAAGG+AGG + chr5_2:7623935-7623954 None:intergenic 40.0%
! CTCACATTTGACTTTGTTGG+TGG + chr5_2:7623977-7623996 None:intergenic 40.0%
CCACAGCTGAAGCATAAATT+TGG + chr5_2:7624106-7624125 None:intergenic 40.0%
CCAAATTTATGCTTCAGCTG+TGG - chr5_2:7624103-7624122 Msa0754020:CDS 40.0%
ACTTATGCAGTACTTCCTTC+TGG + chr5_2:7624172-7624191 None:intergenic 40.0%
!! AGGAAGTACTGCATAAGTGA+AGG - chr5_2:7624174-7624193 Msa0754020:intron 40.0%
!! AGAAGGGATTAGTTCTCCAT+TGG - chr5_2:7624421-7624440 Msa0754020:five_prime_UTR 40.0%
TGAAGTCATTATGCTCACTC+TGG - chr5_2:7624529-7624548 Msa0754020:five_prime_UTR 40.0%
ATGAGGATCCTTAACTCCAA+TGG - chr5_2:7624638-7624657 Msa0754020:five_prime_UTR 40.0%
TAGCTGAAACAAACTTGTGG+AGG + chr5_2:7624718-7624737 None:intergenic 40.0%
AGCTAGCTGAAACAAACTTG+TGG + chr5_2:7624721-7624740 None:intergenic 40.0%
!! GTGGAGAATGTTGGTCTTGA+AGG + chr5_2:7621707-7621726 None:intergenic 45.0%
GAAGCAGAAGTGGAGAATGT+TGG + chr5_2:7621716-7621735 None:intergenic 45.0%
! AAGGACTCTAGAAGCAGAAG+TGG + chr5_2:7621726-7621745 None:intergenic 45.0%
! CGGCGTTGAATTGAATTGGA+AGG + chr5_2:7621745-7621764 None:intergenic 45.0%
! CCTTAGGGGAAAGCACAAAT+AGG + chr5_2:7621796-7621815 None:intergenic 45.0%
CCTATTTGTGCTTTCCCCTA+AGG - chr5_2:7621793-7621812 Msa0754020:intron 45.0%
GATAAGACCTTGTTGATCGG+AGG + chr5_2:7621822-7621841 None:intergenic 45.0%
GGCATTCTACTATGAGGGAA+AGG - chr5_2:7622162-7622181 Msa0754020:CDS 45.0%
GATGGAAGGGAGTGAAATTG+TGG - chr5_2:7622658-7622677 Msa0754020:intron 45.0%
TTCTACTACGAAGACTGCAC+CGG + chr5_2:7622694-7622713 None:intergenic 45.0%
GTGCAGTCTTCGTAGTAGAA+AGG - chr5_2:7622694-7622713 Msa0754020:intron 45.0%
CTAATGCAATCACAGTTGCC+GGG + chr5_2:7623013-7623032 None:intergenic 45.0%
CCTAATGCAATCACAGTTGC+CGG + chr5_2:7623014-7623033 None:intergenic 45.0%
TAATGCAGAGGGCAGTTCAA+TGG - chr5_2:7623192-7623211 Msa0754020:intron 45.0%
CTGCCGTTCCTTTCATTCTA+TGG - chr5_2:7623750-7623769 Msa0754020:intron 45.0%
AACAAACTTGTGGAGGTGGT+AGG + chr5_2:7624711-7624730 None:intergenic 45.0%
CTGAAACAAACTTGTGGAGG+TGG + chr5_2:7624715-7624734 None:intergenic 45.0%
!!! TAAATTTAGAAAATTAATTT+TGG - chr5_2:7621328-7621347 Msa0754020:three_prime_UTR 5.0%
GGCAATGACTAACGTGTGGA+GGG + chr5_2:7621522-7621541 None:intergenic 50.0%
AGGCAATGACTAACGTGTGG+AGG + chr5_2:7621523-7621542 None:intergenic 50.0%
! CCACCGGCGTTGAATTGAAT+TGG + chr5_2:7621749-7621768 None:intergenic 50.0%
CCAATTCAATTCAACGCCGG+TGG - chr5_2:7621746-7621765 Msa0754020:intron 50.0%
! GGGAAAGCACAAATAGGCCT+CGG + chr5_2:7621790-7621809 None:intergenic 50.0%
AAGACCTTGTTGATCGGAGG+TGG + chr5_2:7621819-7621838 None:intergenic 50.0%
TCAACCTTGCCAGCTGAAGA+GGG + chr5_2:7621948-7621967 None:intergenic 50.0%
AGGGAGTGAAATTGTGGCAG+AGG - chr5_2:7622664-7622683 Msa0754020:intron 50.0%
GGGAGTGAAATTGTGGCAGA+GGG - chr5_2:7622665-7622684 Msa0754020:intron 50.0%
TCTACTACGAAGACTGCACC+GGG + chr5_2:7622693-7622712 None:intergenic 50.0%
CCGGCAACTGTGATTGCATT+AGG - chr5_2:7623011-7623030 Msa0754020:intron 50.0%
TAGGGGCCATGTCCTAATTG+TGG - chr5_2:7623898-7623917 Msa0754020:CDS 50.0%
!! TGCTCACTCTGGAACACCAT+TGG - chr5_2:7624540-7624559 Msa0754020:five_prime_UTR 50.0%
GTTATCACGTGGGCATAGGG+TGG + chr5_2:7621379-7621398 None:intergenic 55.0%
GACTAACGTGTGGAGGGACT+TGG + chr5_2:7621516-7621535 None:intergenic 55.0%
CACAAATAGGCCTCGGCGAA+GGG + chr5_2:7621783-7621802 None:intergenic 55.0%
! TTGATCGGAGGTGGCCTTAG+GGG + chr5_2:7621810-7621829 None:intergenic 55.0%
! GTTGATCGGAGGTGGCCTTA+GGG + chr5_2:7621811-7621830 None:intergenic 55.0%
TGTTGATCGGAGGTGGCCTT+AGG + chr5_2:7621812-7621831 None:intergenic 55.0%
AAGGCCACCTCCGATCAACA+AGG - chr5_2:7621812-7621831 Msa0754020:intron 55.0%
TGTTTCCTCCCCTCTTCAGC+TGG - chr5_2:7621936-7621955 Msa0754020:CDS 55.0%
CAACCTTGCCAGCTGAAGAG+GGG + chr5_2:7621947-7621966 None:intergenic 55.0%
CTCAACCTTGCCAGCTGAAG+AGG + chr5_2:7621949-7621968 None:intergenic 55.0%
CTCTTCAGCTGGCAAGGTTG+AGG - chr5_2:7621947-7621966 Msa0754020:intron 55.0%
TGGTGTGTGTGTGTGCGCAA+CGG - chr5_2:7622564-7622583 Msa0754020:intron 55.0%
AAATTGTGGCAGAGGGTCCC+CGG - chr5_2:7622672-7622691 Msa0754020:intron 55.0%
CTACTACGAAGACTGCACCG+GGG + chr5_2:7622692-7622711 None:intergenic 55.0%
CAGTTGCCGGGACTTTCAGT+AGG + chr5_2:7623001-7623020 None:intergenic 55.0%
GCAGAGGGCAGTTCAATGGT+TGG - chr5_2:7623196-7623215 Msa0754020:intron 55.0%
GGTCGATAGTAGGGTGAGTG+AGG - chr5_2:7623413-7623432 Msa0754020:intron 55.0%
GGCAAGTGTCAAGCCCAAAC+TGG + chr5_2:7623487-7623506 None:intergenic 55.0%
GCACAAATAGGCCTCGGCGA+AGG + chr5_2:7621784-7621803 None:intergenic 60.0%
GGTGTGTGTGTGTGCGCAAC+GGG - chr5_2:7622565-7622584 Msa0754020:intron 60.0%
GGCGCTCCTACTGAAAGTCC+CGG - chr5_2:7622992-7623011 Msa0754020:intron 60.0%
AAGGGATGAGTGGCGGCCAC+CGG + chr5_2:7621765-7621784 None:intergenic 65.0%
CTCGGCGAAGGGATGAGTGG+CGG + chr5_2:7621772-7621791 None:intergenic 65.0%
CCTTGCCAGCTGAAGAGGGG+AGG + chr5_2:7621944-7621963 None:intergenic 65.0%
CCTCCCCTCTTCAGCTGGCA+AGG - chr5_2:7621941-7621960 Msa0754020:CDS 65.0%
CGCCACTCATCCCTTCGCCG+AGG - chr5_2:7621770-7621789 Msa0754020:intron 70.0%
GGCCTCGGCGAAGGGATGAG+TGG + chr5_2:7621775-7621794 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 7621264 7624821 7621264 ID=Msa0754020;Name=Msa0754020
chr5_2 mRNA 7621264 7624821 7621264 ID=Msa0754020-mRNA-1;Parent=Msa0754020;Name=Msa0754020-mRNA-1;_AED=0.16;_eAED=0.16;_QI=404|1|1|1|0.8|0.81|11|424|315
chr5_2 exon 7621264 7621681 7621264 ID=Msa0754020-mRNA-1:exon:3473;Parent=Msa0754020-mRNA-1
chr5_2 exon 7621890 7621965 7621890 ID=Msa0754020-mRNA-1:exon:3472;Parent=Msa0754020-mRNA-1
chr5_2 exon 7622087 7622184 7622087 ID=Msa0754020-mRNA-1:exon:3471;Parent=Msa0754020-mRNA-1
chr5_2 exon 7622262 7622372 7622262 ID=Msa0754020-mRNA-1:exon:3470;Parent=Msa0754020-mRNA-1
chr5_2 exon 7622498 7622549 7622498 ID=Msa0754020-mRNA-1:exon:3469;Parent=Msa0754020-mRNA-1
chr5_2 exon 7623049 7623125 7623049 ID=Msa0754020-mRNA-1:exon:3468;Parent=Msa0754020-mRNA-1
chr5_2 exon 7623370 7623426 7623370 ID=Msa0754020-mRNA-1:exon:3467;Parent=Msa0754020-mRNA-1
chr5_2 exon 7623628 7623728 7623628 ID=Msa0754020-mRNA-1:exon:3466;Parent=Msa0754020-mRNA-1
chr5_2 exon 7623826 7623922 7623826 ID=Msa0754020-mRNA-1:exon:3465;Parent=Msa0754020-mRNA-1
chr5_2 exon 7624012 7624130 7624012 ID=Msa0754020-mRNA-1:exon:3464;Parent=Msa0754020-mRNA-1
chr5_2 exon 7624252 7624821 7624252 ID=Msa0754020-mRNA-1:exon:3463;Parent=Msa0754020-mRNA-1
chr5_2 five_prime_UTR 7624418 7624821 7624418 ID=Msa0754020-mRNA-1:five_prime_utr;Parent=Msa0754020-mRNA-1
chr5_2 CDS 7624252 7624417 7624252 ID=Msa0754020-mRNA-1:cds;Parent=Msa0754020-mRNA-1
chr5_2 CDS 7624012 7624130 7624012 ID=Msa0754020-mRNA-1:cds;Parent=Msa0754020-mRNA-1
chr5_2 CDS 7623826 7623922 7623826 ID=Msa0754020-mRNA-1:cds;Parent=Msa0754020-mRNA-1
chr5_2 CDS 7623628 7623728 7623628 ID=Msa0754020-mRNA-1:cds;Parent=Msa0754020-mRNA-1
chr5_2 CDS 7623370 7623426 7623370 ID=Msa0754020-mRNA-1:cds;Parent=Msa0754020-mRNA-1
chr5_2 CDS 7623049 7623125 7623049 ID=Msa0754020-mRNA-1:cds;Parent=Msa0754020-mRNA-1
chr5_2 CDS 7622498 7622549 7622498 ID=Msa0754020-mRNA-1:cds;Parent=Msa0754020-mRNA-1
chr5_2 CDS 7622262 7622372 7622262 ID=Msa0754020-mRNA-1:cds;Parent=Msa0754020-mRNA-1
chr5_2 CDS 7622087 7622184 7622087 ID=Msa0754020-mRNA-1:cds;Parent=Msa0754020-mRNA-1
chr5_2 CDS 7621896 7621965 7621896 ID=Msa0754020-mRNA-1:cds;Parent=Msa0754020-mRNA-1
chr5_2 three_prime_UTR 7621890 7621895 7621890 ID=Msa0754020-mRNA-1:three_prime_utr;Parent=Msa0754020-mRNA-1
chr5_2 three_prime_UTR 7621264 7621681 7621264 ID=Msa0754020-mRNA-1:three_prime_utr;Parent=Msa0754020-mRNA-1
Gene Sequence

>Msa0754020

ATGGCTAGTAAATTATTAGCATTCACATTGACATGCCCTTCAAGACCAACATTCTCCACTTCTGCTTCTAGAGTCCTTCCAATTCAATTCAACGCCGGTGGCCGCCACTCATCCCTTCGCCGAGGCCTATTTGTGCTTTCCCCTAAGGCCACCTCCGATCAACAAGCTGGCAAGGTTGAGGAAGATGCTGTTGTTGATAGTAAAATCTTACCATATTGCAGCATAGACAAAAAAGAGAAGAAGTCACTTGGTGAACTTGAGCAAGATTTTCTTCAAGCACTTCAAGCATTCTACTATGAGGGAAAGGCAACTATGTCAAATGAGGAATTTGATAATCTCAAAGAAGAACTCATGTGGGAAGGAAGCAGCGTTGTAATGCTAAGTTCTTCTGAGCAAAAATTTCTGGAAGCATCTATTGCTTATGTGTCTGGAAAACCAATCATGAGTGATAAAGAGTTTGATGAATTAAAACTGAAGCTAAAGATGGAAGGGAGTGAAATTGTGGCAGAGGGTCCCCGGTGCAGTCTTCGTAGTAGAAAGGTTTACAGTGATCTAACTGTTGACTATTTAAAGGCGCTCCTACTGAAAGTCCCGGCAACTGTGATTGCATTAGGATTGTTCTTCTTCCTTGATGATGTGACTGGATTTGAGATCAACTATCTGATAGCGATTCCAGAACCATTCAGTTTCATTTTGACTTGGTTTGCTGCCGTTCCTTTCATTCTATGGTTTGCTCAGTCAATTACAAATGCAATTATAAAAGATTTCTTGATTTTGAAGGGGCCATGTCCTAATTGTGGTACTGAAAACACCTCCTTCTTTGGGACTATATTGTCAATTTCAAGTGGAAATTCCACCAACAAAGTCAAATGTGAGAACTGTGGAACTGTGATGCTATATGATTCAACTACAAGATTGATTACATTGCCAGAAGGAAGTACTGCATAA

Protein sequence

>Msa0754020

MASKLLAFTLTCPSRPTFSTSASRVLPIQFNAGGRHSSLRRGLFVLSPKATSDQQAGKVEEDAVVDSKILPYCSIDKKEKKSLGELEQDFLQALQAFYYEGKATMSNEEFDNLKEELMWEGSSVVMLSSSEQKFLEASIAYVSGKPIMSDKEFDELKLKLKMEGSEIVAEGPRCSLRSRKVYSDLTVDYLKALLLKVPATVIALGLFFFLDDVTGFEINYLIAIPEPFSFILTWFAAVPFILWFAQSITNAIIKDFLILKGPCPNCGTENTSFFGTILSISSGNSTNKVKCENCGTVMLYDSTTRLITLPEGSTA*