AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1422160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1422160 MtrunA17_Chr4g0045121 94.688 320 17 0 1 320 1 320 0.0 602
Msa1422160 MtrunA17_Chr4g0045131 84.112 321 50 1 1 320 37 357 0.0 578
Msa1422160 MtrunA17_Chr4g0045181 62.229 323 116 3 1 320 1 320 6.33e-156 439
Msa1422160 MtrunA17_Chr7g0235741 60.248 322 122 3 2 320 34 352 6.36e-148 420
Msa1422160 MtrunA17_Chr3g0133701 44.872 312 161 4 14 319 10 316 1.19e-95 286
Msa1422160 MtrunA17_Chr5g0394211 42.683 328 175 7 1 317 33 358 2.66e-94 284
Msa1422160 MtrunA17_Chr4g0045191 45.714 315 151 4 3 317 10 304 9.14e-93 278
Msa1422160 MtrunA17_Chr1g0205871 44.654 318 164 8 10 317 7 322 9.63e-92 276
Msa1422160 MtrunA17_Chr3g0095711 43.827 324 171 6 6 319 48 370 1.37e-90 275
Msa1422160 MtrunA17_Chr8g0353951 43.849 317 170 6 10 319 15 330 2.15e-85 260
Msa1422160 MtrunA17_Chr5g0394251 39.394 330 187 9 2 319 4 332 6.17e-79 243
Msa1422160 MtrunA17_Chr7g0233871 42.857 322 175 6 4 317 5 325 1.37e-77 240
Msa1422160 MtrunA17_Chr1g0205781 43.789 322 169 7 4 317 5 322 1.15e-75 235
Msa1422160 MtrunA17_Chr5g0394241 40.606 330 179 8 4 319 2 328 6.23e-75 233
Msa1422160 MtrunA17_Chr1g0205791 43.168 322 169 8 3 317 2 316 1.17e-69 220
Msa1422160 MtrunA17_Chr1g0149271 38.217 314 178 8 14 320 6 310 5.35e-54 179
Msa1422160 MtrunA17_Chr4g0025291 35.806 310 187 7 18 319 12 317 9.85e-54 178
Msa1422160 MtrunA17_Chr1g0210121 33.779 299 178 5 14 300 29 319 5.85e-48 164
Msa1422160 MtrunA17_Chr7g0214851 33.225 307 173 9 18 300 28 326 9.29e-45 155
Msa1422160 MtrunA17_Chr1g0204201 33.455 275 159 7 23 279 23 291 4.08e-40 143
Msa1422160 MtrunA17_Chr7g0268091 30.159 315 207 7 14 320 10 319 3.54e-39 140
Msa1422160 MtrunA17_Chr6g0474541 33.962 265 160 6 24 277 53 313 1.21e-38 140
Msa1422160 MtrunA17_Chr3g0081521 31.985 272 170 5 61 319 73 342 1.42e-38 139
Msa1422160 MtrunA17_Chr6g0474471 32.550 298 172 11 38 317 39 325 1.06e-37 137
Msa1422160 MtrunA17_Chr8g0351201 33.447 293 178 7 36 317 38 324 7.87e-37 134
Msa1422160 MtrunA17_Chr6g0474491 32.886 298 171 10 38 317 38 324 1.77e-35 130
Msa1422160 MtrunA17_Chr6g0477271 33.115 305 185 8 24 319 59 353 5.77e-35 130
Msa1422160 MtrunA17_Chr8g0351211 33.445 299 172 10 38 320 32 319 9.64e-35 129
Msa1422160 MtrunA17_Chr6g0477161 31.833 311 187 7 24 319 385 685 5.88e-34 131
Msa1422160 MtrunA17_Chr6g0477161 30.844 308 189 7 24 317 37 334 6.00e-34 131
Msa1422160 MtrunA17_Chr1g0196311 32.143 252 151 7 73 317 118 356 3.01e-33 125
Msa1422160 MtrunA17_Chr6g0474411 32.000 300 169 11 38 317 42 326 2.00e-32 122
Msa1422160 MtrunA17_Chr6g0477231 30.565 301 180 8 38 319 47 337 2.32e-32 123
Msa1422160 MtrunA17_Chr6g0477251 31.757 296 179 6 38 319 49 335 2.59e-32 127
Msa1422160 MtrunA17_Chr6g0477251 31.419 296 180 6 38 319 603 889 3.71e-32 126
Msa1422160 MtrunA17_Chr6g0474631 29.762 336 200 11 1 320 12 327 3.77e-32 122
Msa1422160 MtrunA17_Chr1g0204211 31.203 266 163 7 24 276 43 301 6.13e-32 121
Msa1422160 MtrunA17_Chr8g0351171 32.411 253 158 5 38 279 33 283 3.45e-31 119
Msa1422160 MtrunA17_Chr7g0259161 31.250 256 153 8 73 317 103 346 1.29e-30 118
Msa1422160 MtrunA17_Chr1g0191301 29.508 305 181 11 33 317 50 340 1.04e-29 115
Msa1422160 MtrunA17_Chr6g0477241 35.556 180 102 2 38 209 60 233 5.98e-28 110
Msa1422160 MtrunA17_Chr6g0458881 30.038 263 138 10 74 296 158 414 8.39e-19 86.7
Msa1422160 MtrunA17_Chr7g0228721 27.509 269 145 8 74 296 163 427 1.88e-15 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1422160 AT3G48690.1 48.287 321 157 6 7 318 1 321 8.10e-102 302
Msa1422160 AT1G47480.1 47.040 321 158 5 1 319 1 311 7.62e-101 299
Msa1422160 AT2G03550.1 47.619 315 160 4 7 319 1 312 3.28e-100 297
Msa1422160 AT3G48700.1 45.706 326 163 6 7 318 1 326 5.90e-100 297
Msa1422160 AT1G19190.1 46.541 318 162 5 7 319 1 315 2.79e-98 293
Msa1422160 AT1G49650.1 48.701 308 151 6 16 317 66 372 3.22e-95 287
Msa1422160 AT1G49660.1 48.447 322 150 4 7 317 1 317 3.88e-94 282
Msa1422160 AT1G49640.1 47.403 308 149 7 17 317 12 313 2.71e-91 275
Msa1422160 AT1G68620.1 31.288 326 198 10 5 317 17 329 8.25e-44 153
Msa1422160 AT5G06570.1 33.229 319 200 7 10 317 9 325 7.42e-39 140
Msa1422160 AT5G06570.2 33.229 319 200 7 10 317 9 325 7.42e-39 140
Msa1422160 AT5G06570.3 33.229 319 200 7 10 317 24 340 1.12e-38 140
Msa1422160 AT5G06570.4 33.229 319 200 7 10 317 24 340 1.12e-38 140
Msa1422160 AT5G16080.1 31.353 303 184 9 14 302 31 323 1.22e-37 137
Msa1422160 AT2G45600.1 31.864 295 182 8 38 320 31 318 2.43e-36 133
Msa1422160 AT5G27320.1 29.373 303 183 9 33 317 50 339 7.86e-33 124
Msa1422160 AT2G45610.1 32.192 292 180 8 38 317 38 323 9.26e-33 124
Msa1422160 AT3G05120.1 29.180 305 183 10 33 317 50 341 1.26e-32 124
Msa1422160 AT3G63010.1 32.090 268 150 9 33 279 50 306 2.54e-30 118
Msa1422160 AT5G23530.1 30.345 290 179 9 37 317 51 326 1.19e-29 115
Msa1422160 AT5G62180.1 30.909 275 162 8 38 295 38 301 3.72e-29 114

Find 69 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTGGTGGGTGATTGGTTT+TGG 0.145456 tig0025341:-30991 None:intergenic
GCTAATATTTCACACTATTT+AGG 0.162895 tig0025341:+31302 Msa1422160:CDS
TTTAGATTCAACGTTGGTTT+TGG 0.202200 tig0025341:-30919 None:intergenic
ACTTCACTTGCTAATGTTAT+TGG 0.227846 tig0025341:+31107 Msa1422160:CDS
CCATTGCTCATGAAGATTCA+TGG 0.261987 tig0025341:+31171 Msa1422160:CDS
TCGGTTTGGGAAGGAAAATT+TGG 0.267860 tig0025341:+31328 Msa1422160:CDS
TTGAGGTAGTTATGGTAGTT+TGG 0.286089 tig0025341:-31077 None:intergenic
CACTATTTAGGTATTCGGTT+TGG 0.299444 tig0025341:+31314 Msa1422160:CDS
AGTTGTATCCTTCATCAAAA+AGG 0.305612 tig0025341:+31730 Msa1422160:CDS
TTTCACACTATTTAGGTATT+CGG 0.307797 tig0025341:+31309 Msa1422160:CDS
CCCGGCTAATGATCCCGATT+TGG 0.313711 tig0025341:+31511 Msa1422160:CDS
CCGGCTAATGATCCCGATTT+GGG 0.325716 tig0025341:+31512 Msa1422160:CDS
CTTTCTCAAAATCTGCATAT+TGG 0.331880 tig0025341:-31253 None:intergenic
CCTGTCTTTGTTTACTTTCA+CGG 0.344106 tig0025341:+31023 Msa1422160:CDS
TGCTGAGATGTTATGTTCTT+CGG 0.344889 tig0025341:-30955 None:intergenic
GGTCGTGTGGAAAATCTAAT+AGG 0.345060 tig0025341:+30867 Msa1422160:CDS
GCTTCACATGTTGGTGGAAA+TGG 0.350595 tig0025341:+31212 Msa1422160:CDS
AATTGGATCAGAATCAAATA+TGG 0.360234 tig0025341:+31409 Msa1422160:CDS
ATTCATGGCTTGCACTCAAA+TGG 0.361551 tig0025341:+31186 Msa1422160:CDS
AGAATGCTTGTTTGTGTTGC+TGG 0.364980 tig0025341:+31551 Msa1422160:CDS
ACTATTTAGGTATTCGGTTT+GGG 0.372944 tig0025341:+31315 Msa1422160:CDS
TAGAAAAGATTCATAATTTG+TGG 0.374091 tig0025341:+31441 Msa1422160:CDS
TCTTCATGAGCAATGGGAAC+AGG 0.384148 tig0025341:-31164 None:intergenic
AATGGCTATTTCGTCGTTGA+TGG 0.384770 tig0025341:-30811 None:intergenic
TTGGATGGTTTGAAACTTGA+AGG 0.392629 tig0025341:+31347 Msa1422160:CDS
TAACAGAGTTGAGGTAGTTA+TGG 0.398147 tig0025341:-31085 None:intergenic
ATATTTGATTCTGATCCAAT+TGG 0.402441 tig0025341:-31407 None:intergenic
TTATGGTAGTTTGGTGAGAA+AGG 0.405757 tig0025341:-31068 None:intergenic
TGATCCCGATTTGGGGAAGT+TGG 0.407781 tig0025341:+31520 Msa1422160:CDS
ACAACCCAACTTCCCCAAAT+CGG 0.414443 tig0025341:-31525 None:intergenic
AATCAACGGGTCGTCAGATC+CGG 0.425185 tig0025341:-31486 None:intergenic
GATCCCGATTTGGGGAAGTT+GGG 0.451553 tig0025341:+31521 Msa1422160:CDS
CCCAAATCGGGATCATTAGC+CGG 0.457367 tig0025341:-31512 None:intergenic
GCAATGGGAACAGGGTGTTC+CGG 0.459329 tig0025341:-31155 None:intergenic
TTTGTTTACTTTCACGGCGG+TGG 0.469368 tig0025341:+31029 Msa1422160:CDS
CATTAGCCGGGTTAATCAAC+GGG 0.471264 tig0025341:-31499 None:intergenic
GACATAGCATTCTCACAACT+TGG 0.472647 tig0025341:-31695 None:intergenic
CCAAATCGGGATCATTAGCC+GGG 0.473736 tig0025341:-31511 None:intergenic
CAACCCAACTTCCCCAAATC+GGG 0.476448 tig0025341:-31524 None:intergenic
TTCATGGCTTGCACTCAAAT+GGG 0.480049 tig0025341:+31187 Msa1422160:CDS
AAGTGGTTGGGGTGGTGTTG+TGG 0.481631 tig0025341:+31625 Msa1422160:CDS
CATGAATCTTCATGAGCAAT+GGG 0.488874 tig0025341:-31170 None:intergenic
CCGTGAAAGTAAACAAAGAC+AGG 0.497695 tig0025341:-31023 None:intergenic
GGCTATTTCGTCGTTGATGG+TGG 0.504951 tig0025341:-30808 None:intergenic
TTTGAGAAAGTGTTCTTAGG+AGG 0.509667 tig0025341:+31266 Msa1422160:CDS
GAATGCTTGTTTGTGTTGCT+GGG 0.511986 tig0025341:+31552 Msa1422160:CDS
CCATGAATCTTCATGAGCAA+TGG 0.523102 tig0025341:-31171 None:intergenic
TCGTCAGATCCGGTCGTGGT+TGG 0.537151 tig0025341:-31476 None:intergenic
TTTACATGTCCAACCACGAC+CGG 0.538692 tig0025341:+31467 Msa1422160:CDS
TGGATGGTTTGAAACTTGAA+GGG 0.541623 tig0025341:+31348 Msa1422160:CDS
GTGGAAATGGCTCTGATGAA+TGG 0.542774 tig0025341:+31225 Msa1422160:CDS
TATTTCGTCGTTGATGGTGG+AGG 0.545398 tig0025341:-30805 None:intergenic
TTCTTAGGAGGTGATAGTGC+TGG 0.559579 tig0025341:+31278 Msa1422160:CDS
TTTAGGTATTCGGTTTGGGA+AGG 0.559737 tig0025341:+31319 Msa1422160:CDS
TCATTAGCCGGGTTAATCAA+CGG 0.564768 tig0025341:-31500 None:intergenic
TTTGGGAAGGAAAATTTGGA+TGG 0.568228 tig0025341:+31332 Msa1422160:CDS
AAATGGGTTGCTTCACATGT+TGG 0.579541 tig0025341:+31203 Msa1422160:CDS
TTTGTATACTCTCAAGATTG+GGG 0.592780 tig0025341:-30841 None:intergenic
CTTCATGAGCAATGGGAACA+GGG 0.596332 tig0025341:-31163 None:intergenic
TGGGTTGCTTCACATGTTGG+TGG 0.616285 tig0025341:+31206 Msa1422160:CDS
TTGTATACTCTCAAGATTGG+GGG 0.619560 tig0025341:-30840 None:intergenic
TGTTCACTACAGAAGAGCAC+CGG 0.621670 tig0025341:+31136 Msa1422160:CDS
TGACGACCCGTTGATTAACC+CGG 0.631546 tig0025341:+31493 Msa1422160:CDS
GTCTTTGTTTACTTTCACGG+CGG 0.634625 tig0025341:+31026 Msa1422160:CDS
CGTGAAAGTAAACAAAGACA+GGG 0.635829 tig0025341:-31022 None:intergenic
AACGTCTTTAGATTCAACGT+TGG 0.641244 tig0025341:-30925 None:intergenic
CGGCTAATGATCCCGATTTG+GGG 0.655506 tig0025341:+31513 Msa1422160:CDS
TGTGGAAGTTGTTGAAACAG+AGG 0.656063 tig0025341:+31643 Msa1422160:CDS
CAAGTGAAGTAACAGAGTTG+AGG 0.663575 tig0025341:-31094 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATATCCATCCTTATTTT+TGG + tig0025341:31375-31394 Msa1422160:CDS 20.0%
!!! TTATATCCATCCTTATTTTT+GGG + tig0025341:31376-31395 Msa1422160:CDS 20.0%
!! TAGAAAAGATTCATAATTTG+TGG + tig0025341:31441-31460 Msa1422160:CDS 20.0%
!!! TTTATATCCATCCTTATTTT+TGG + tig0025341:31375-31394 Msa1422160:CDS 20.0%
!!! TTATATCCATCCTTATTTTT+GGG + tig0025341:31376-31395 Msa1422160:CDS 20.0%
!! TAGAAAAGATTCATAATTTG+TGG + tig0025341:31441-31460 Msa1422160:CDS 20.0%
!! TTTTGTATACTCTCAAGATT+GGG - tig0025341:30845-30864 None:intergenic 25.0%
!! TTTTTGTATACTCTCAAGAT+TGG - tig0025341:30846-30865 None:intergenic 25.0%
!! ATCTTGAGAGTATACAAAAA+CGG + tig0025341:30846-30865 Msa1422160:CDS 25.0%
! GCTAATATTTCACACTATTT+AGG + tig0025341:31302-31321 Msa1422160:CDS 25.0%
! TTTCACACTATTTAGGTATT+CGG + tig0025341:31309-31328 Msa1422160:CDS 25.0%
!!! TATATCCATCCTTATTTTTG+GGG + tig0025341:31377-31396 Msa1422160:CDS 25.0%
! ATATTTGATTCTGATCCAAT+TGG - tig0025341:31410-31429 None:intergenic 25.0%
! AATTGGATCAGAATCAAATA+TGG + tig0025341:31409-31428 Msa1422160:CDS 25.0%
! AAAGAATTGCTTGAAAAAAG+TGG + tig0025341:31608-31627 Msa1422160:CDS 25.0%
!! TTTTGTATACTCTCAAGATT+GGG - tig0025341:30845-30864 None:intergenic 25.0%
!! TTTTTGTATACTCTCAAGAT+TGG - tig0025341:30846-30865 None:intergenic 25.0%
!! ATCTTGAGAGTATACAAAAA+CGG + tig0025341:30846-30865 Msa1422160:CDS 25.0%
! GCTAATATTTCACACTATTT+AGG + tig0025341:31302-31321 Msa1422160:CDS 25.0%
! TTTCACACTATTTAGGTATT+CGG + tig0025341:31309-31328 Msa1422160:CDS 25.0%
!!! TATATCCATCCTTATTTTTG+GGG + tig0025341:31377-31396 Msa1422160:CDS 25.0%
! ATATTTGATTCTGATCCAAT+TGG - tig0025341:31410-31429 None:intergenic 25.0%
! AATTGGATCAGAATCAAATA+TGG + tig0025341:31409-31428 Msa1422160:CDS 25.0%
! AAAGAATTGCTTGAAAAAAG+TGG + tig0025341:31608-31627 Msa1422160:CDS 25.0%
TTTGTATACTCTCAAGATTG+GGG - tig0025341:30844-30863 None:intergenic 30.0%
!!! TTAGATTCAACGTTGGTTTT+GGG - tig0025341:30921-30940 None:intergenic 30.0%
!!! TTTAGATTCAACGTTGGTTT+TGG - tig0025341:30922-30941 None:intergenic 30.0%
! ACTTCACTTGCTAATGTTAT+TGG + tig0025341:31107-31126 Msa1422160:CDS 30.0%
CTTTCTCAAAATCTGCATAT+TGG - tig0025341:31256-31275 None:intergenic 30.0%
!!! GATTTTGAGAAAGTGTTCTT+AGG + tig0025341:31263-31282 Msa1422160:CDS 30.0%
ACTATTTAGGTATTCGGTTT+GGG + tig0025341:31315-31334 Msa1422160:CDS 30.0%
!! GAAAGATATTTTGAGGGATA+GGG + tig0025341:31574-31593 Msa1422160:CDS 30.0%
!! AAAGATATTTTGAGGGATAG+GGG + tig0025341:31575-31594 Msa1422160:CDS 30.0%
AATTGCTTGAAAAAAGTGGT+TGG + tig0025341:31612-31631 Msa1422160:CDS 30.0%
ATTGCTTGAAAAAAGTGGTT+GGG + tig0025341:31613-31632 Msa1422160:CDS 30.0%
! TTTTGATGAAGGATACAACT+TGG - tig0025341:31730-31749 None:intergenic 30.0%
AGTTGTATCCTTCATCAAAA+AGG + tig0025341:31730-31749 Msa1422160:CDS 30.0%
TTTGTATACTCTCAAGATTG+GGG - tig0025341:30844-30863 None:intergenic 30.0%
!!! TTAGATTCAACGTTGGTTTT+GGG - tig0025341:30921-30940 None:intergenic 30.0%
!!! TTTAGATTCAACGTTGGTTT+TGG - tig0025341:30922-30941 None:intergenic 30.0%
! ACTTCACTTGCTAATGTTAT+TGG + tig0025341:31107-31126 Msa1422160:CDS 30.0%
CTTTCTCAAAATCTGCATAT+TGG - tig0025341:31256-31275 None:intergenic 30.0%
!!! GATTTTGAGAAAGTGTTCTT+AGG + tig0025341:31263-31282 Msa1422160:CDS 30.0%
ACTATTTAGGTATTCGGTTT+GGG + tig0025341:31315-31334 Msa1422160:CDS 30.0%
!! GAAAGATATTTTGAGGGATA+GGG + tig0025341:31574-31593 Msa1422160:CDS 30.0%
!! AAAGATATTTTGAGGGATAG+GGG + tig0025341:31575-31594 Msa1422160:CDS 30.0%
AATTGCTTGAAAAAAGTGGT+TGG + tig0025341:31612-31631 Msa1422160:CDS 30.0%
ATTGCTTGAAAAAAGTGGTT+GGG + tig0025341:31613-31632 Msa1422160:CDS 30.0%
! TTTTGATGAAGGATACAACT+TGG - tig0025341:31730-31749 None:intergenic 30.0%
AGTTGTATCCTTCATCAAAA+AGG + tig0025341:31730-31749 Msa1422160:CDS 30.0%
TTGTATACTCTCAAGATTGG+GGG - tig0025341:30843-30862 None:intergenic 35.0%
AACGTCTTTAGATTCAACGT+TGG - tig0025341:30928-30947 None:intergenic 35.0%
TGCTGAGATGTTATGTTCTT+CGG - tig0025341:30958-30977 None:intergenic 35.0%
! AACAAAGACAGGGAGTTTTT+GGG - tig0025341:31015-31034 None:intergenic 35.0%
! AAACAAAGACAGGGAGTTTT+TGG - tig0025341:31016-31035 None:intergenic 35.0%
CGTGAAAGTAAACAAAGACA+GGG - tig0025341:31025-31044 None:intergenic 35.0%
! CCTGTCTTTGTTTACTTTCA+CGG + tig0025341:31023-31042 Msa1422160:CDS 35.0%
! TTATGGTAGTTTGGTGAGAA+AGG - tig0025341:31071-31090 None:intergenic 35.0%
TTGAGGTAGTTATGGTAGTT+TGG - tig0025341:31080-31099 None:intergenic 35.0%
TAACAGAGTTGAGGTAGTTA+TGG - tig0025341:31088-31107 None:intergenic 35.0%
CATGAATCTTCATGAGCAAT+GGG - tig0025341:31173-31192 None:intergenic 35.0%
!! TTTGAGAAAGTGTTCTTAGG+AGG + tig0025341:31266-31285 Msa1422160:CDS 35.0%
CACTATTTAGGTATTCGGTT+TGG + tig0025341:31314-31333 Msa1422160:CDS 35.0%
TTTGGGAAGGAAAATTTGGA+TGG + tig0025341:31332-31351 Msa1422160:CDS 35.0%
! TTGGATGGTTTGAAACTTGA+AGG + tig0025341:31347-31366 Msa1422160:CDS 35.0%
! TGGATGGTTTGAAACTTGAA+GGG + tig0025341:31348-31367 Msa1422160:CDS 35.0%
! TTGCTGGGAAAGATATTTTG+AGG + tig0025341:31567-31586 Msa1422160:CDS 35.0%
!! TGCTGGGAAAGATATTTTGA+GGG + tig0025341:31568-31587 Msa1422160:CDS 35.0%
!! GGAAAGATATTTTGAGGGAT+AGG + tig0025341:31573-31592 Msa1422160:CDS 35.0%
TTGCTTGAAAAAAGTGGTTG+GGG + tig0025341:31614-31633 Msa1422160:CDS 35.0%
TTGTATACTCTCAAGATTGG+GGG - tig0025341:30843-30862 None:intergenic 35.0%
AACGTCTTTAGATTCAACGT+TGG - tig0025341:30928-30947 None:intergenic 35.0%
TGCTGAGATGTTATGTTCTT+CGG - tig0025341:30958-30977 None:intergenic 35.0%
! AACAAAGACAGGGAGTTTTT+GGG - tig0025341:31015-31034 None:intergenic 35.0%
! AAACAAAGACAGGGAGTTTT+TGG - tig0025341:31016-31035 None:intergenic 35.0%
CGTGAAAGTAAACAAAGACA+GGG - tig0025341:31025-31044 None:intergenic 35.0%
! CCTGTCTTTGTTTACTTTCA+CGG + tig0025341:31023-31042 Msa1422160:CDS 35.0%
! TTATGGTAGTTTGGTGAGAA+AGG - tig0025341:31071-31090 None:intergenic 35.0%
TTGAGGTAGTTATGGTAGTT+TGG - tig0025341:31080-31099 None:intergenic 35.0%
TAACAGAGTTGAGGTAGTTA+TGG - tig0025341:31088-31107 None:intergenic 35.0%
CATGAATCTTCATGAGCAAT+GGG - tig0025341:31173-31192 None:intergenic 35.0%
!! TTTGAGAAAGTGTTCTTAGG+AGG + tig0025341:31266-31285 Msa1422160:CDS 35.0%
CACTATTTAGGTATTCGGTT+TGG + tig0025341:31314-31333 Msa1422160:CDS 35.0%
TTTGGGAAGGAAAATTTGGA+TGG + tig0025341:31332-31351 Msa1422160:CDS 35.0%
! TTGGATGGTTTGAAACTTGA+AGG + tig0025341:31347-31366 Msa1422160:CDS 35.0%
! TGGATGGTTTGAAACTTGAA+GGG + tig0025341:31348-31367 Msa1422160:CDS 35.0%
! TTGCTGGGAAAGATATTTTG+AGG + tig0025341:31567-31586 Msa1422160:CDS 35.0%
!! TGCTGGGAAAGATATTTTGA+GGG + tig0025341:31568-31587 Msa1422160:CDS 35.0%
!! GGAAAGATATTTTGAGGGAT+AGG + tig0025341:31573-31592 Msa1422160:CDS 35.0%
TTGCTTGAAAAAAGTGGTTG+GGG + tig0025341:31614-31633 Msa1422160:CDS 35.0%
! AATGGCTATTTCGTCGTTGA+TGG - tig0025341:30814-30833 None:intergenic 40.0%
! CAAGATTGGGGGTATATCAA+TGG - tig0025341:30832-30851 None:intergenic 40.0%
AGTATACAAAAACGGTCGTG+TGG + tig0025341:30854-30873 Msa1422160:CDS 40.0%
GGTCGTGTGGAAAATCTAAT+AGG + tig0025341:30867-30886 Msa1422160:CDS 40.0%
!!! TTGGTTTTGGGATCAAGAGA+TGG - tig0025341:30909-30928 None:intergenic 40.0%
CCGTGAAAGTAAACAAAGAC+AGG - tig0025341:31026-31045 None:intergenic 40.0%
! GTCTTTGTTTACTTTCACGG+CGG + tig0025341:31026-31045 Msa1422160:CDS 40.0%
CAAGTGAAGTAACAGAGTTG+AGG - tig0025341:31097-31116 None:intergenic 40.0%
CCATGAATCTTCATGAGCAA+TGG - tig0025341:31174-31193 None:intergenic 40.0%
CCATTGCTCATGAAGATTCA+TGG + tig0025341:31171-31190 Msa1422160:CDS 40.0%
! ATTCATGGCTTGCACTCAAA+TGG + tig0025341:31186-31205 Msa1422160:CDS 40.0%
! TTCATGGCTTGCACTCAAAT+GGG + tig0025341:31187-31206 Msa1422160:CDS 40.0%
!! AAATGGGTTGCTTCACATGT+TGG + tig0025341:31203-31222 Msa1422160:CDS 40.0%
!! TTTAGGTATTCGGTTTGGGA+AGG + tig0025341:31319-31338 Msa1422160:CDS 40.0%
!! TCGGTTTGGGAAGGAAAATT+TGG + tig0025341:31328-31347 Msa1422160:CDS 40.0%
TCATTAGCCGGGTTAATCAA+CGG - tig0025341:31503-31522 None:intergenic 40.0%
AGAATGCTTGTTTGTGTTGC+TGG + tig0025341:31551-31570 Msa1422160:CDS 40.0%
! GAATGCTTGTTTGTGTTGCT+GGG + tig0025341:31552-31571 Msa1422160:CDS 40.0%
TGTGGAAGTTGTTGAAACAG+AGG + tig0025341:31643-31662 Msa1422160:CDS 40.0%
GACATAGCATTCTCACAACT+TGG - tig0025341:31698-31717 None:intergenic 40.0%
! AATGGCTATTTCGTCGTTGA+TGG - tig0025341:30814-30833 None:intergenic 40.0%
! CAAGATTGGGGGTATATCAA+TGG - tig0025341:30832-30851 None:intergenic 40.0%
AGTATACAAAAACGGTCGTG+TGG + tig0025341:30854-30873 Msa1422160:CDS 40.0%
GGTCGTGTGGAAAATCTAAT+AGG + tig0025341:30867-30886 Msa1422160:CDS 40.0%
!!! TTGGTTTTGGGATCAAGAGA+TGG - tig0025341:30909-30928 None:intergenic 40.0%
CCGTGAAAGTAAACAAAGAC+AGG - tig0025341:31026-31045 None:intergenic 40.0%
! GTCTTTGTTTACTTTCACGG+CGG + tig0025341:31026-31045 Msa1422160:CDS 40.0%
CAAGTGAAGTAACAGAGTTG+AGG - tig0025341:31097-31116 None:intergenic 40.0%
CCATGAATCTTCATGAGCAA+TGG - tig0025341:31174-31193 None:intergenic 40.0%
CCATTGCTCATGAAGATTCA+TGG + tig0025341:31171-31190 Msa1422160:CDS 40.0%
! ATTCATGGCTTGCACTCAAA+TGG + tig0025341:31186-31205 Msa1422160:CDS 40.0%
! TTCATGGCTTGCACTCAAAT+GGG + tig0025341:31187-31206 Msa1422160:CDS 40.0%
!! AAATGGGTTGCTTCACATGT+TGG + tig0025341:31203-31222 Msa1422160:CDS 40.0%
!! TTTAGGTATTCGGTTTGGGA+AGG + tig0025341:31319-31338 Msa1422160:CDS 40.0%
!! TCGGTTTGGGAAGGAAAATT+TGG + tig0025341:31328-31347 Msa1422160:CDS 40.0%
TCATTAGCCGGGTTAATCAA+CGG - tig0025341:31503-31522 None:intergenic 40.0%
AGAATGCTTGTTTGTGTTGC+TGG + tig0025341:31551-31570 Msa1422160:CDS 40.0%
! GAATGCTTGTTTGTGTTGCT+GGG + tig0025341:31552-31571 Msa1422160:CDS 40.0%
TGTGGAAGTTGTTGAAACAG+AGG + tig0025341:31643-31662 Msa1422160:CDS 40.0%
GACATAGCATTCTCACAACT+TGG - tig0025341:31698-31717 None:intergenic 40.0%
!! TATTTCGTCGTTGATGGTGG+AGG - tig0025341:30808-30827 None:intergenic 45.0%
!!! GTTTTGGGATCAAGAGATGG+AGG - tig0025341:30906-30925 None:intergenic 45.0%
!!! GTTGGTGGGTGATTGGTTTT+GGG - tig0025341:30993-31012 None:intergenic 45.0%
!!! TTTTTGGGTTGGTGGGTGAT+TGG - tig0025341:31000-31019 None:intergenic 45.0%
!!! AAGACAGGGAGTTTTTGGGT+TGG - tig0025341:31011-31030 None:intergenic 45.0%
TTTGTTTACTTTCACGGCGG+TGG + tig0025341:31029-31048 Msa1422160:CDS 45.0%
! TGTTCACTACAGAAGAGCAC+CGG + tig0025341:31136-31155 Msa1422160:CDS 45.0%
CTTCATGAGCAATGGGAACA+GGG - tig0025341:31166-31185 None:intergenic 45.0%
TCTTCATGAGCAATGGGAAC+AGG - tig0025341:31167-31186 None:intergenic 45.0%
! GCTTCACATGTTGGTGGAAA+TGG + tig0025341:31212-31231 Msa1422160:CDS 45.0%
!! GTGGAAATGGCTCTGATGAA+TGG + tig0025341:31225-31244 Msa1422160:CDS 45.0%
! TTCTTAGGAGGTGATAGTGC+TGG + tig0025341:31278-31297 Msa1422160:CDS 45.0%
CCACACCCCAAAAATAAGGA+TGG - tig0025341:31385-31404 None:intergenic 45.0%
!!! CCATCCTTATTTTTGGGGTG+TGG + tig0025341:31382-31401 Msa1422160:CDS 45.0%
GGATCCACACCCCAAAAATA+AGG - tig0025341:31389-31408 None:intergenic 45.0%
!!! TTTTGGGGTGTGGATCCAAT+TGG + tig0025341:31392-31411 Msa1422160:CDS 45.0%
TTTACATGTCCAACCACGAC+CGG + tig0025341:31467-31486 Msa1422160:CDS 45.0%
CATTAGCCGGGTTAATCAAC+GGG - tig0025341:31502-31521 None:intergenic 45.0%
ACAACCCAACTTCCCCAAAT+CGG - tig0025341:31528-31547 None:intergenic 45.0%
CTTGAAAAAAGTGGTTGGGG+TGG + tig0025341:31617-31636 Msa1422160:CDS 45.0%
!! TATTTCGTCGTTGATGGTGG+AGG - tig0025341:30808-30827 None:intergenic 45.0%
!!! GTTTTGGGATCAAGAGATGG+AGG - tig0025341:30906-30925 None:intergenic 45.0%
!!! GTTGGTGGGTGATTGGTTTT+GGG - tig0025341:30993-31012 None:intergenic 45.0%
!!! TTTTTGGGTTGGTGGGTGAT+TGG - tig0025341:31000-31019 None:intergenic 45.0%
!!! AAGACAGGGAGTTTTTGGGT+TGG - tig0025341:31011-31030 None:intergenic 45.0%
TTTGTTTACTTTCACGGCGG+TGG + tig0025341:31029-31048 Msa1422160:CDS 45.0%
! TGTTCACTACAGAAGAGCAC+CGG + tig0025341:31136-31155 Msa1422160:CDS 45.0%
CTTCATGAGCAATGGGAACA+GGG - tig0025341:31166-31185 None:intergenic 45.0%
TCTTCATGAGCAATGGGAAC+AGG - tig0025341:31167-31186 None:intergenic 45.0%
! GCTTCACATGTTGGTGGAAA+TGG + tig0025341:31212-31231 Msa1422160:CDS 45.0%
!! GTGGAAATGGCTCTGATGAA+TGG + tig0025341:31225-31244 Msa1422160:CDS 45.0%
! TTCTTAGGAGGTGATAGTGC+TGG + tig0025341:31278-31297 Msa1422160:CDS 45.0%
CCACACCCCAAAAATAAGGA+TGG - tig0025341:31385-31404 None:intergenic 45.0%
!!! CCATCCTTATTTTTGGGGTG+TGG + tig0025341:31382-31401 Msa1422160:CDS 45.0%
GGATCCACACCCCAAAAATA+AGG - tig0025341:31389-31408 None:intergenic 45.0%
!!! TTTTGGGGTGTGGATCCAAT+TGG + tig0025341:31392-31411 Msa1422160:CDS 45.0%
TTTACATGTCCAACCACGAC+CGG + tig0025341:31467-31486 Msa1422160:CDS 45.0%
CATTAGCCGGGTTAATCAAC+GGG - tig0025341:31502-31521 None:intergenic 45.0%
ACAACCCAACTTCCCCAAAT+CGG - tig0025341:31528-31547 None:intergenic 45.0%
CTTGAAAAAAGTGGTTGGGG+TGG + tig0025341:31617-31636 Msa1422160:CDS 45.0%
! GGCTATTTCGTCGTTGATGG+TGG - tig0025341:30811-30830 None:intergenic 50.0%
!!! GGTTGGTGGGTGATTGGTTT+TGG - tig0025341:30994-31013 None:intergenic 50.0%
!!! CAGGGAGTTTTTGGGTTGGT+GGG - tig0025341:31007-31026 None:intergenic 50.0%
!!! ACAGGGAGTTTTTGGGTTGG+TGG - tig0025341:31008-31027 None:intergenic 50.0%
TGGGTTGCTTCACATGTTGG+TGG + tig0025341:31206-31225 Msa1422160:CDS 50.0%
AATCAACGGGTCGTCAGATC+CGG - tig0025341:31489-31508 None:intergenic 50.0%
! TGACGACCCGTTGATTAACC+CGG + tig0025341:31493-31512 Msa1422160:CDS 50.0%
CCAAATCGGGATCATTAGCC+GGG - tig0025341:31514-31533 None:intergenic 50.0%
CCCAAATCGGGATCATTAGC+CGG - tig0025341:31515-31534 None:intergenic 50.0%
CCGGCTAATGATCCCGATTT+GGG + tig0025341:31512-31531 Msa1422160:CDS 50.0%
! CGGCTAATGATCCCGATTTG+GGG + tig0025341:31513-31532 Msa1422160:CDS 50.0%
!! TGATCCCGATTTGGGGAAGT+TGG + tig0025341:31520-31539 Msa1422160:CDS 50.0%
!! GATCCCGATTTGGGGAAGTT+GGG + tig0025341:31521-31540 Msa1422160:CDS 50.0%
CAACCCAACTTCCCCAAATC+GGG - tig0025341:31527-31546 None:intergenic 50.0%
! GGCTATTTCGTCGTTGATGG+TGG - tig0025341:30811-30830 None:intergenic 50.0%
!!! GGTTGGTGGGTGATTGGTTT+TGG - tig0025341:30994-31013 None:intergenic 50.0%
!!! CAGGGAGTTTTTGGGTTGGT+GGG - tig0025341:31007-31026 None:intergenic 50.0%
!!! ACAGGGAGTTTTTGGGTTGG+TGG - tig0025341:31008-31027 None:intergenic 50.0%
TGGGTTGCTTCACATGTTGG+TGG + tig0025341:31206-31225 Msa1422160:CDS 50.0%
AATCAACGGGTCGTCAGATC+CGG - tig0025341:31489-31508 None:intergenic 50.0%
! TGACGACCCGTTGATTAACC+CGG + tig0025341:31493-31512 Msa1422160:CDS 50.0%
CCAAATCGGGATCATTAGCC+GGG - tig0025341:31514-31533 None:intergenic 50.0%
CCCAAATCGGGATCATTAGC+CGG - tig0025341:31515-31534 None:intergenic 50.0%
CCGGCTAATGATCCCGATTT+GGG + tig0025341:31512-31531 Msa1422160:CDS 50.0%
! CGGCTAATGATCCCGATTTG+GGG + tig0025341:31513-31532 Msa1422160:CDS 50.0%
!! TGATCCCGATTTGGGGAAGT+TGG + tig0025341:31520-31539 Msa1422160:CDS 50.0%
!! GATCCCGATTTGGGGAAGTT+GGG + tig0025341:31521-31540 Msa1422160:CDS 50.0%
CAACCCAACTTCCCCAAATC+GGG - tig0025341:31527-31546 None:intergenic 50.0%
! GCAATGGGAACAGGGTGTTC+CGG - tig0025341:31158-31177 None:intergenic 55.0%
CCCGGCTAATGATCCCGATT+TGG + tig0025341:31511-31530 Msa1422160:CDS 55.0%
! AAGTGGTTGGGGTGGTGTTG+TGG + tig0025341:31625-31644 Msa1422160:CDS 55.0%
! GCAATGGGAACAGGGTGTTC+CGG - tig0025341:31158-31177 None:intergenic 55.0%
CCCGGCTAATGATCCCGATT+TGG + tig0025341:31511-31530 Msa1422160:CDS 55.0%
! AAGTGGTTGGGGTGGTGTTG+TGG + tig0025341:31625-31644 Msa1422160:CDS 55.0%
TCGTCAGATCCGGTCGTGGT+TGG - tig0025341:31479-31498 None:intergenic 60.0%
TCGTCAGATCCGGTCGTGGT+TGG - tig0025341:31479-31498 None:intergenic 60.0%
CGGGTCGTCAGATCCGGTCG+TGG - tig0025341:31483-31502 None:intergenic 70.0%
CGGGTCGTCAGATCCGGTCG+TGG - tig0025341:31483-31502 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0025341 gene 30795 31757 30795 ID=Msa1422160;Name=Msa1422160
tig0025341 mRNA 30795 31757 30795 ID=Msa1422160-mRNA-1;Parent=Msa1422160;Name=Msa1422160-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|320
tig0025341 exon 30795 31757 30795 ID=Msa1422160-mRNA-1:exon:2426;Parent=Msa1422160-mRNA-1
tig0025341 CDS 30795 31757 30795 ID=Msa1422160-mRNA-1:cds;Parent=Msa1422160-mRNA-1
Gene Sequence

>Msa1422160

ATGGATTCAACCTCCACCATCAACGACGAAATAGCCATTGATATACCCCCAATCTTGAGAGTATACAAAAACGGTCGTGTGGAAAATCTAATAGGTGATGAGATTCTTCCTCCATCTCTTGATCCCAAAACCAACGTTGAATCTAAAGACGTTATAATCTCCGAAGAACATAACATCTCAGCAAGACTTTTCATTCCCAAAACCAATCACCCACCAACCCAAAAACTCCCTGTCTTTGTTTACTTTCACGGCGGTGGTTTTTGCATTGAAACACCTTTCTCACCAAACTACCATAACTACCTCAACTCTGTTACTTCACTTGCTAATGTTATTGGTGTTTCTGTTCACTACAGAAGAGCACCGGAACACCCTGTTCCCATTGCTCATGAAGATTCATGGCTTGCACTCAAATGGGTTGCTTCACATGTTGGTGGAAATGGCTCTGATGAATGGTTGAACCAATATGCAGATTTTGAGAAAGTGTTCTTAGGAGGTGATAGTGCTGGTGCTAATATTTCACACTATTTAGGTATTCGGTTTGGGAAGGAAAATTTGGATGGTTTGAAACTTGAAGGGAGTGTTTATATCCATCCTTATTTTTGGGGTGTGGATCCAATTGGATCAGAATCAAATATGGCTGAATTTGTAGAAAAGATTCATAATTTGTGGCGTTTTACATGTCCAACCACGACCGGATCTGACGACCCGTTGATTAACCCGGCTAATGATCCCGATTTGGGGAAGTTGGGTTGTAAGAGAATGCTTGTTTGTGTTGCTGGGAAAGATATTTTGAGGGATAGGGGTTTGTATTACAAAGAATTGCTTGAAAAAAGTGGTTGGGGTGGTGTTGTGGAAGTTGTTGAAACAGAGGATGAACAACATATTTTTCATCTGTTCAAACCAAGTTGTGAGAATGCTATGTCTTTGCTTAACCAAGTTGTATCCTTCATCAAAAAGGCTTGA

Protein sequence

>Msa1422160

MDSTSTINDEIAIDIPPILRVYKNGRVENLIGDEILPPSLDPKTNVESKDVIISEEHNISARLFIPKTNHPPTQKLPVFVYFHGGGFCIETPFSPNYHNYLNSVTSLANVIGVSVHYRRAPEHPVPIAHEDSWLALKWVASHVGGNGSDEWLNQYADFEKVFLGGDSAGANISHYLGIRFGKENLDGLKLEGSVYIHPYFWGVDPIGSESNMAEFVEKIHNLWRFTCPTTTGSDDPLINPANDPDLGKLGCKRMLVCVAGKDILRDRGLYYKELLEKSGWGGVVEVVETEDEQHIFHLFKPSCENAMSLLNQVVSFIKKA*