AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1143810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1143810 MtrunA17_Chr4g0077121 96.746 338 9 1 1 338 1 336 0.0 674
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1143810 AT2G43950.1 63.295 346 113 3 2 338 3 343 2.71e-153 434
Msa1143810 AT2G43950.2 58.958 307 112 3 2 299 3 304 6.31e-121 352

Find 111 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATGGAGCGTGTAATTATT+AGG 0.200366 7_4:+19662277 None:intergenic
CTGAAAAGATAATTTCAATT+TGG 0.215408 7_4:+19662087 None:intergenic
CGTGTAATTATTAGGGTTTC+CGG 0.226456 7_4:+19662285 None:intergenic
AATTGAACTTTCATCTTCAT+TGG 0.277986 7_4:+19659136 None:intergenic
ATTTGACGGGAGAGAAAGTA+TGG 0.298323 7_4:+19661405 None:intergenic
CCTTGGCTGGGCATCCCTTT+GGG 0.317934 7_4:-19659714 Msa1143810:intron
GGAAATCTGAAAGTTGCTTT+TGG 0.321527 7_4:+19661757 None:intergenic
ATTCGGAGGTTCGCCTTGGC+TGG 0.321634 7_4:-19659727 Msa1143810:CDS
ATATAAATTGCAGGAAATTT+CGG 0.321891 7_4:+19659027 None:intergenic
GCCTTGGCTGGGCATCCCTT+TGG 0.333645 7_4:-19659715 Msa1143810:CDS
ACAATTGCGATTCGAACTAT+TGG 0.339553 7_4:-19659805 Msa1143810:CDS
TATGGAGCGTGTAATTATTA+GGG 0.342261 7_4:+19662278 None:intergenic
AGCACCAGTGAGTTTGAATC+TGG 0.355796 7_4:+19661946 None:intergenic
AGAAGAGATGGGACATTTGA+TGG 0.358516 7_4:-19659057 Msa1143810:exon
ATAATTGACATATAAATTGC+AGG 0.362902 7_4:+19659018 None:intergenic
TTCTTCTGATAACTATAATT+CGG 0.366285 7_4:+19658822 None:intergenic
TCTGTCAGTGGGATTCTTAA+AGG 0.372625 7_4:-19661658 Msa1143810:CDS
CTAGAGCACTGTGGTCTTCA+AGG 0.384543 7_4:+19661993 None:intergenic
TTCCTTCAGGTTGGTGATGA+AGG 0.388318 7_4:-19659178 Msa1143810:intron
TAGTTCCTTGGCGGTGTGGC+TGG 0.393376 7_4:-19658930 Msa1143810:three_prime_UTR
TACTCGGAAATGACAAGATA+TGG 0.407168 7_4:+19662197 None:intergenic
TATTCTGCAAAGGTGACATT+TGG 0.416630 7_4:-19658979 Msa1143810:three_prime_UTR
ATTTAAAGCTGGTTATGATT+CGG 0.428310 7_4:-19659744 Msa1143810:CDS
AAGACCAAACCTACGCTTGA+AGG 0.430680 7_4:+19661369 None:intergenic
TTGGTCTTTCTGACAAGTTA+AGG 0.431557 7_4:-19661354 Msa1143810:intron
TTTGTTGACGGCGGCGGCGG+CGG 0.438275 7_4:+19662220 None:intergenic
TCCAAGTCCATCTAGTTCCT+TGG 0.440586 7_4:-19658942 Msa1143810:three_prime_UTR
AGAGAAAGAGGAGGAGCAGC+AGG 0.441827 7_4:-19661713 Msa1143810:CDS
CAACTACCGCCGGTGAGGAT+TGG 0.444311 7_4:+19662251 None:intergenic
TGACTAGTGGGTGGTGGAGA+TGG 0.451110 7_4:-19662317 Msa1143810:exon
AAAATTTACAGGAAACTTTG+TGG 0.453050 7_4:+19662122 None:intergenic
AGAGGAGGAGCAGCAGGAGG+AGG 0.453391 7_4:-19661707 Msa1143810:CDS
TGCGCTTTCGCTGTCGAACT+CGG 0.456394 7_4:+19662153 None:intergenic
TTTGCCTTCAAGCGTAGGTT+TGG 0.457188 7_4:-19661373 Msa1143810:CDS
GAGTGAGATAAGTGACTAGT+GGG 0.464137 7_4:-19662329 Msa1143810:five_prime_UTR
TGGTTTGTTGACGGCGGCGG+CGG 0.466893 7_4:+19662217 None:intergenic
GAAGATTTCAAATTTAAAGC+TGG 0.470602 7_4:-19659755 Msa1143810:CDS
TGATAGTTGAAGTGCATAGC+CGG 0.474867 7_4:+19661868 None:intergenic
ATATGGTTTGTTGACGGCGG+CGG 0.478912 7_4:+19662214 None:intergenic
GTGGAGATGGATTCAGCAAC+CGG 0.479701 7_4:-19662304 Msa1143810:exon
TTCGGAGGTTCGCCTTGGCT+GGG 0.481241 7_4:-19659726 Msa1143810:CDS
GCCACTTCCATCCGCTGGAT+TGG 0.483583 7_4:-19661843 Msa1143810:intron
ATTCTGAGGGCAGGCCTACT+CGG 0.483618 7_4:+19662181 None:intergenic
TATGATTCGGAGGTTCGCCT+TGG 0.485674 7_4:-19659731 Msa1143810:CDS
GATAGTTGAAGTGCATAGCC+GGG 0.505267 7_4:+19661869 None:intergenic
GAATCTGGGACCAACGTCAA+TGG 0.510577 7_4:+19661961 None:intergenic
ACCAATCCAGCGGATGGAAG+TGG 0.512331 7_4:+19661842 None:intergenic
CTTCAGGTTGGTGATGAAGG+TGG 0.513813 7_4:-19659175 Msa1143810:intron
AGAGTGAGATAAGTGACTAG+TGG 0.514533 7_4:-19662330 Msa1143810:five_prime_UTR
GACAAGATATGGTTTGTTGA+CGG 0.514737 7_4:+19662208 None:intergenic
AGTTTCGTTACAAGAGAAAG+AGG 0.517878 7_4:-19661725 Msa1143810:CDS
AAATTTGAAATCTTCACCAT+AGG 0.521461 7_4:+19659763 None:intergenic
TGTCATTTGCCTTCAAGCGT+AGG 0.530223 7_4:-19661378 Msa1143810:CDS
TGTTTCGGATTAAGAAGAGA+TGG 0.531407 7_4:-19659069 Msa1143810:CDS
CACACCGCCAAGGAACTAGA+TGG 0.531805 7_4:+19658935 None:intergenic
GCAAATGACAAATCATTTGA+CGG 0.532446 7_4:+19661391 None:intergenic
CACTGGTGCTCATGATGTCA+AGG 0.533292 7_4:-19661933 Msa1143810:CDS
TCAACGCCACTTCCATCCGC+TGG 0.542399 7_4:-19661848 Msa1143810:CDS
TCAATTCATCATCCTTGTAG+TGG 0.542879 7_4:+19661608 None:intergenic
GCAACTTTCAGATTTCCTCT+AGG 0.543233 7_4:-19661751 Msa1143810:CDS
AAAATTCCTTGTCTGTCAGT+GGG 0.547827 7_4:-19661669 Msa1143810:CDS
AAGTCCATCTAGTTCCTTGG+CGG 0.549184 7_4:-19658939 Msa1143810:three_prime_UTR
GCTGTCTACAAGCATACCTA+TGG 0.550366 7_4:-19659779 Msa1143810:CDS
CAAGGTCGTAGTGGAGGCTA+AGG 0.551757 7_4:+19662011 None:intergenic
CAAATGACAAATCATTTGAC+GGG 0.553334 7_4:+19661392 None:intergenic
TTCAGGTTGGTGATGAAGGT+GGG 0.556339 7_4:-19659174 Msa1143810:intron
GTTTCGGATTAAGAAGAGAT+GGG 0.558012 7_4:-19659068 Msa1143810:CDS
AAATGAGACACGTACCCAAA+GGG 0.561109 7_4:+19659700 None:intergenic
CAATTCATCATCCTTGTAGT+GGG 0.563611 7_4:+19661609 None:intergenic
CGAACTCGGTGGTAATTCTG+AGG 0.569969 7_4:+19662167 None:intergenic
GGTCCCAGATTCAAACTCAC+TGG 0.571945 7_4:-19661950 Msa1143810:CDS
GATAAGTGACTAGTGGGTGG+TGG 0.572597 7_4:-19662323 Msa1143810:five_prime_UTR
AAAATATGGGTATTCTGCAA+AGG 0.573738 7_4:-19658989 Msa1143810:three_prime_UTR
GAAAGAGGAGGAGCAGCAGG+AGG 0.574367 7_4:-19661710 Msa1143810:CDS
ATATCTTGTCATTTCCGAGT+AGG 0.574605 7_4:-19662195 Msa1143810:CDS
TCGGTGGTAATTCTGAGGGC+AGG 0.578370 7_4:+19662172 None:intergenic
CCCAAAGGGATGCCCAGCCA+AGG 0.579829 7_4:+19659714 None:intergenic
GAACATACCAATCCAGCGGA+TGG 0.588139 7_4:+19661836 None:intergenic
GCCAAGGAACTAGATGGACT+TGG 0.591695 7_4:+19658941 None:intergenic
CATCTAGTTCCTTGGCGGTG+TGG 0.597853 7_4:-19658934 Msa1143810:three_prime_UTR
AAGATAATTTCAATTTGGCG+AGG 0.598597 7_4:+19662092 None:intergenic
TGTCTGCACTGCCCACTACA+AGG 0.599268 7_4:-19661620 Msa1143810:CDS
TAAAGCTGGTTATGATTCGG+AGG 0.600014 7_4:-19659741 Msa1143810:CDS
GAAGTTAAGATACCGCTACA+AGG 0.605149 7_4:-19661587 Msa1143810:intron
GTTGCTAATATCGCTGACCC+CGG 0.605885 7_4:-19661887 Msa1143810:CDS
GTTAAGAGTTCCATTGACGT+TGG 0.609020 7_4:-19661971 Msa1143810:CDS
TATGAAGCTGATCTGAGGCT+CGG 0.610187 7_4:+19662042 None:intergenic
CCATAAAATCCAATCCTCAC+CGG 0.611947 7_4:-19662260 Msa1143810:CDS
CATGATGTCAAGGCTCAACA+AGG 0.612893 7_4:-19661923 Msa1143810:CDS
GGTCTTCAAGGTCGTAGTGG+AGG 0.622677 7_4:+19662005 None:intergenic
AAGAATCCCACTGACAGACA+AGG 0.625574 7_4:+19661663 None:intergenic
TGTGGTCTTCAAGGTCGTAG+TGG 0.626033 7_4:+19662002 None:intergenic
GGCAGAGGATCAACTACCGC+CGG 0.628335 7_4:+19662241 None:intergenic
AAATTGCAGGAAATTTCGGT+AGG 0.630272 7_4:+19659031 None:intergenic
TTCGATATGAAGCTGATCTG+AGG 0.636620 7_4:+19662037 None:intergenic
GCACCAGTGAGTTTGAATCT+GGG 0.638299 7_4:+19661947 None:intergenic
GAACTCGGTGGTAATTCTGA+GGG 0.640245 7_4:+19662168 None:intergenic
AGGATCAACTACCGCCGGTG+AGG 0.644689 7_4:+19662246 None:intergenic
TTCGTTACAAGAGAAAGAGG+AGG 0.646802 7_4:-19661722 Msa1143810:CDS
AGCAGTAATATACCTTGTAG+CGG 0.666629 7_4:+19661575 None:intergenic
TGTCAAGGCTCAACAAGGAG+AGG 0.670822 7_4:-19661918 Msa1143810:CDS
AAGATATGGTTTGTTGACGG+CGG 0.675992 7_4:+19662211 None:intergenic
GCTTTCGCTGTCGAACTCGG+TGG 0.680041 7_4:+19662156 None:intergenic
TTTGACGGGAGAGAAAGTAT+GGG 0.685254 7_4:+19661406 None:intergenic
TGAGATAAGTGACTAGTGGG+TGG 0.689966 7_4:-19662326 Msa1143810:five_prime_UTR
ATAGTTGAAGTGCATAGCCG+GGG 0.690042 7_4:+19661870 None:intergenic
AAAAGAACATACCAATCCAG+CGG 0.697521 7_4:+19661832 None:intergenic
TCAACAAGGAGAGGTTACAA+TGG 0.698086 7_4:-19661909 Msa1143810:CDS
TGTAACGAAACTTCACCTAG+AGG 0.699865 7_4:+19661736 None:intergenic
TAAAATCCAATCCTCACCGG+CGG 0.708233 7_4:-19662257 Msa1143810:CDS
AACTCTTAACTAGAGCACTG+TGG 0.799938 7_4:+19661984 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGATAAAATGATAAAAATT+GGG + chr7_4:19659538-19659557 None:intergenic 10.0%
!! ATAGATAAAATGATAAAAAT+TGG + chr7_4:19659539-19659558 None:intergenic 10.0%
!!! TTTGTTTATTTTAAATTACA+AGG + chr7_4:19660653-19660672 None:intergenic 10.0%
!!! TAAATTTTTCAAATAAATGC+AGG - chr7_4:19659632-19659651 Msa1143810:intron 15.0%
!! TAAATCTTAGAAAATGAAAA+TGG - chr7_4:19660400-19660419 Msa1143810:intron 15.0%
!! AAATCTTAGAAAATGAAAAT+GGG - chr7_4:19660401-19660420 Msa1143810:intron 15.0%
!! TCAAATATCATAAAAGAAAA+TGG + chr7_4:19660507-19660526 None:intergenic 15.0%
!! CACAACAAATAAAAAAATTA+GGG + chr7_4:19660720-19660739 None:intergenic 15.0%
!! TCACAACAAATAAAAAAATT+AGG + chr7_4:19660721-19660740 None:intergenic 15.0%
!! AAATTAATGTTTCATGTAAA+AGG + chr7_4:19660796-19660815 None:intergenic 15.0%
!! CAAAAAAAATTCAAGTAAAA+AGG + chr7_4:19661727-19661746 None:intergenic 15.0%
!! CTGAAAAGATAATTTCAATT+TGG + chr7_4:19658997-19659016 None:intergenic 20.0%
!! AAATAAATGAATGATAGTAG+AGG + chr7_4:19659293-19659312 None:intergenic 20.0%
!! TAGGAAAAAAATTCTTAAGA+GGG + chr7_4:19659768-19659787 None:intergenic 20.0%
!! ATAGGAAAAAAATTCTTAAG+AGG + chr7_4:19659769-19659788 None:intergenic 20.0%
!!! TTTAACATAACATTTCTAGA+TGG + chr7_4:19659812-19659831 None:intergenic 20.0%
!!! GTTAAAATTGTTTTATCAAG+TGG - chr7_4:19659826-19659845 Msa1143810:intron 20.0%
!!! TCTTTCTTATTTATCTCATA+GGG + chr7_4:19660097-19660116 None:intergenic 20.0%
!!! TTCTTTCTTATTTATCTCAT+AGG + chr7_4:19660098-19660117 None:intergenic 20.0%
!! AATGATTTCACAAAGTAAAT+GGG + chr7_4:19660146-19660165 None:intergenic 20.0%
!! AAATGATTTCACAAAGTAAA+TGG + chr7_4:19660147-19660166 None:intergenic 20.0%
!!! AAATTTTCAGAAACTTTTAG+TGG - chr7_4:19660531-19660550 Msa1143810:intron 20.0%
!!! TATTTTAAATTACAAGGAGA+TGG + chr7_4:19660647-19660666 None:intergenic 20.0%
!! TTCTAATGAGATTATATTGA+GGG + chr7_4:19660764-19660783 None:intergenic 20.0%
!! ATTCTAATGAGATTATATTG+AGG + chr7_4:19660765-19660784 None:intergenic 20.0%
!!! ATTGTTAGCATTTTCTTTTT+TGG - chr7_4:19661001-19661020 Msa1143810:intron 20.0%
!!! TTTTAAAAGCCATATTAGTA+AGG + chr7_4:19661234-19661253 None:intergenic 20.0%
!! ATAATGTTATACTGAACAAA+CGG + chr7_4:19661682-19661701 None:intergenic 20.0%
!! ATATAAATTGCAGGAAATTT+CGG + chr7_4:19662057-19662076 None:intergenic 20.0%
!! ATAATTGACATATAAATTGC+AGG + chr7_4:19662066-19662085 None:intergenic 20.0%
!! TTCTTCTGATAACTATAATT+CGG + chr7_4:19662262-19662281 None:intergenic 20.0%
!! CTAAAAATATATTTGCAAGA+CGG + chr7_4:19662309-19662328 None:intergenic 20.0%
! AAAATTTACAGGAAACTTTG+TGG + chr7_4:19658962-19658981 None:intergenic 25.0%
!! CAAAGTTTCCTGTAAATTTT+TGG - chr7_4:19658962-19658981 Msa1143810:three_prime_UTR 25.0%
!! CTTAAAGGTCAATTTTTGAA+TGG - chr7_4:19659438-19659457 Msa1143810:intron 25.0%
! CACATATTATTGCAAGTAAT+AGG + chr7_4:19659787-19659806 None:intergenic 25.0%
!!! AAAATTGTTTTATCAAGTGG+TGG - chr7_4:19659829-19659848 Msa1143810:intron 25.0%
! GAATTTCTTGAAATACAATC+TGG - chr7_4:19659943-19659962 Msa1143810:intron 25.0%
! AAGAAAGAAAATGAAGAGAA+CGG - chr7_4:19660109-19660128 Msa1143810:intron 25.0%
! ATGATTTCACAAAGTAAATG+GGG + chr7_4:19660145-19660164 None:intergenic 25.0%
!!! CTCAGTTTAACTTGATAATA+CGG - chr7_4:19660194-19660213 Msa1143810:intron 25.0%
!!! TCAGTTTAACTTGATAATAC+GGG - chr7_4:19660195-19660214 Msa1143810:intron 25.0%
!!! GTTAATTTTACTTGCTAACA+AGG + chr7_4:19660379-19660398 None:intergenic 25.0%
! ATCATAAAAGAAAATGGTGA+AGG + chr7_4:19660501-19660520 None:intergenic 25.0%
! GTTATGAAGAATGTAAGTTT+AGG + chr7_4:19660578-19660597 None:intergenic 25.0%
! CAATTGTAATAGAGAGAATA+TGG + chr7_4:19660608-19660627 None:intergenic 25.0%
! TTCATCAACTACTTTACATT+TGG - chr7_4:19660829-19660848 Msa1143810:intron 25.0%
!!! TATCAAAGGAGCATTTAATT+GGG + chr7_4:19660946-19660965 None:intergenic 25.0%
!!! ACAATCAATTACTTTTAGGT+TGG + chr7_4:19660986-19661005 None:intergenic 25.0%
!!! GCTAACAATCAATTACTTTT+AGG + chr7_4:19660990-19661009 None:intergenic 25.0%
!!! ATGGCTTTTAAAATGCTTTA+TGG - chr7_4:19661241-19661260 Msa1143810:intron 25.0%
!! AAATTTGAAATCTTCACCAT+AGG + chr7_4:19661321-19661340 None:intergenic 25.0%
!! GAAGATTTCAAATTTAAAGC+TGG - chr7_4:19661326-19661345 Msa1143810:intron 25.0%
!! ATTTAAAGCTGGTTATGATT+CGG - chr7_4:19661337-19661356 Msa1143810:intron 25.0%
! ATTAGAAATGCAAAATCAAC+AGG + chr7_4:19661458-19661477 None:intergenic 25.0%
!! TGATTTTGCATTTCTAATTG+TGG - chr7_4:19661460-19661479 Msa1143810:intron 25.0%
! TCAAAAAATCCTTTATATGC+AGG + chr7_4:19661618-19661637 None:intergenic 25.0%
! CATCATTATACTGAGAAATT+CGG - chr7_4:19661823-19661842 Msa1143810:intron 25.0%
! AATTGAACTTTCATCTTCAT+TGG + chr7_4:19661948-19661967 None:intergenic 25.0%
!!! AATCTTCAGTTTTGATGTTT+CGG - chr7_4:19661997-19662016 Msa1143810:CDS 25.0%
!! ACAATCTTTACAGATTTTGT+AGG + chr7_4:19662220-19662239 None:intergenic 25.0%
TATGGAGCGTGTAATTATTA+GGG + chr7_4:19658806-19658825 None:intergenic 30.0%
TTATGGAGCGTGTAATTATT+AGG + chr7_4:19658807-19658826 None:intergenic 30.0%
AAGATAATTTCAATTTGGCG+AGG + chr7_4:19658992-19659011 None:intergenic 30.0%
! TCTTTTCAGAACAACAGTAA+AGG - chr7_4:19659008-19659027 Msa1143810:three_prime_UTR 30.0%
AAGGTAATAAACTGAAGAGA+TGG + chr7_4:19659570-19659589 None:intergenic 30.0%
ATTTGGCACTCATATAAGAT+TGG - chr7_4:19659606-19659625 Msa1143810:intron 30.0%
CAAATGACAAATCATTTGAC+GGG + chr7_4:19659692-19659711 None:intergenic 30.0%
GCAAATGACAAATCATTTGA+CGG + chr7_4:19659693-19659712 None:intergenic 30.0%
AAATTTGTGTAGAGTAGCTT+TGG + chr7_4:19660029-19660048 None:intergenic 30.0%
CAAAACAAAGAAATGTAGCA+AGG + chr7_4:19660062-19660081 None:intergenic 30.0%
!!! TGAGCACGTATTTTTAGAAA+AGG + chr7_4:19660178-19660197 None:intergenic 30.0%
!! CAGTTTAACTTGATAATACG+GGG - chr7_4:19660196-19660215 Msa1143810:intron 30.0%
!!! GAACAATTGTCTGCATTTTT+TGG + chr7_4:19660336-19660355 None:intergenic 30.0%
ATAGAGAGAATATGGAAGAA+AGG + chr7_4:19660600-19660619 None:intergenic 30.0%
ATGTTTCATGTAAAAGGAGT+CGG + chr7_4:19660790-19660809 None:intergenic 30.0%
TGTAGTTGATTACTATGTGT+TGG + chr7_4:19660856-19660875 None:intergenic 30.0%
!! ATCAAAGGAGCATTTAATTG+GGG + chr7_4:19660945-19660964 None:intergenic 30.0%
!! CTATCAAAGGAGCATTTAAT+TGG + chr7_4:19660947-19660966 None:intergenic 30.0%
!!! AGCATTTTCTTTTTTGGCTA+TGG - chr7_4:19661007-19661026 Msa1143810:intron 30.0%
AAAATACCTTGTTCTCTTGT+CGG + chr7_4:19661101-19661120 None:intergenic 30.0%
AAGTGGAAACACCAAAATAA+GGG + chr7_4:19661145-19661164 None:intergenic 30.0%
TAAGTGGAAACACCAAAATA+AGG + chr7_4:19661146-19661165 None:intergenic 30.0%
! AAATACCTATAGAGCATCTT+TGG + chr7_4:19661178-19661197 None:intergenic 30.0%
AGACGAGCTTATTATTCTAA+GGG + chr7_4:19661211-19661230 None:intergenic 30.0%
AATGCTTTATGGATAGTTAC+TGG - chr7_4:19661252-19661271 Msa1143810:intron 30.0%
ACAGATGGCATTAATGAAAT+CGG + chr7_4:19661428-19661447 None:intergenic 30.0%
AACAGATAGTTAGTAGTGTA+TGG + chr7_4:19661486-19661505 None:intergenic 30.0%
!! TACTAACTATCTGTTGCTTT+GGG - chr7_4:19661491-19661510 Msa1143810:intron 30.0%
AGATATGTTGCACTTACATT+GGG - chr7_4:19661554-19661573 Msa1143810:intron 30.0%
AAAATCCTTTATATGCAGGA+AGG + chr7_4:19661614-19661633 None:intergenic 30.0%
! GAAGATTTTATGTCATCTTG+TGG + chr7_4:19661984-19662003 None:intergenic 30.0%
AAAATATGGGTATTCTGCAA+AGG - chr7_4:19662092-19662111 Msa1143810:CDS 30.0%
CGTGTAATTATTAGGGTTTC+CGG + chr7_4:19658799-19658818 None:intergenic 35.0%
!! GACAAGATATGGTTTGTTGA+CGG + chr7_4:19658876-19658895 None:intergenic 35.0%
TACTCGGAAATGACAAGATA+TGG + chr7_4:19658887-19658906 None:intergenic 35.0%
! ATATCTTGTCATTTCCGAGT+AGG - chr7_4:19658886-19658905 Msa1143810:three_prime_UTR 35.0%
AAAAGAACATACCAATCCAG+CGG + chr7_4:19659252-19659271 None:intergenic 35.0%
!! GGAAATCTGAAAGTTGCTTT+TGG + chr7_4:19659327-19659346 None:intergenic 35.0%
AGTTTCGTTACAAGAGAAAG+AGG - chr7_4:19659356-19659375 Msa1143810:intron 35.0%
AAAAATTCCTTGTCTGTCAG+TGG - chr7_4:19659411-19659430 Msa1143810:intron 35.0%
AAAATTCCTTGTCTGTCAGT+GGG - chr7_4:19659412-19659431 Msa1143810:intron 35.0%
CAATTCATCATCCTTGTAGT+GGG + chr7_4:19659475-19659494 None:intergenic 35.0%
TCAATTCATCATCCTTGTAG+TGG + chr7_4:19659476-19659495 None:intergenic 35.0%
AGCAGTAATATACCTTGTAG+CGG + chr7_4:19659509-19659528 None:intergenic 35.0%
AATAACTACTCAAGCAGCTA+AGG + chr7_4:19659589-19659608 None:intergenic 35.0%
TAGCTGCTTGAGTAGTTATT+TGG - chr7_4:19659589-19659608 Msa1143810:intron 35.0%
! TTGGTCTTTCTGACAAGTTA+AGG - chr7_4:19659727-19659746 Msa1143810:CDS 35.0%
AAGAAAGAAAATACAGCCTC+AGG - chr7_4:19659972-19659991 Msa1143810:intron 35.0%
ATGAAGAGAACGGAAAATTG+AGG - chr7_4:19660119-19660138 Msa1143810:intron 35.0%
CATCTTCTCTTCATCACAAT+GGG + chr7_4:19660246-19660265 None:intergenic 35.0%
TCATCTTCTCTTCATCACAA+TGG + chr7_4:19660247-19660266 None:intergenic 35.0%
TAGATTATGCAGTAACCAGT+TGG + chr7_4:19660888-19660907 None:intergenic 35.0%
CAGTAAGTGTATGCTATCAA+AGG + chr7_4:19660960-19660979 None:intergenic 35.0%
!!! TCTTTTTTGGCTATGGTTTG+TGG - chr7_4:19661014-19661033 Msa1143810:intron 35.0%
!!! CTTTTTTGGCTATGGTTTGT+GGG - chr7_4:19661015-19661034 Msa1143810:intron 35.0%
! TCCTTTGTTTGTCTCTTCAT+TGG - chr7_4:19661043-19661062 Msa1143810:intron 35.0%
TCCAATGAAGAGACAAACAA+AGG + chr7_4:19661047-19661066 None:intergenic 35.0%
AGAGTGAAGACACATATTGA+TGG - chr7_4:19661066-19661085 Msa1143810:intron 35.0%
GAGTGAAGACACATATTGAT+GGG - chr7_4:19661067-19661086 Msa1143810:intron 35.0%
!! AAGACACATATTGATGGGTT+AGG - chr7_4:19661072-19661091 Msa1143810:intron 35.0%
!! AGACACATATTGATGGGTTA+GGG - chr7_4:19661073-19661092 Msa1143810:intron 35.0%
!! GACAAGAGAACAAGGTATTT+TGG - chr7_4:19661100-19661119 Msa1143810:intron 35.0%
!! ACTCATTTGAGCCCTTATTT+TGG - chr7_4:19661131-19661150 Msa1143810:intron 35.0%
GAGACGAGCTTATTATTCTA+AGG + chr7_4:19661212-19661231 None:intergenic 35.0%
ACAATTGCGATTCGAACTAT+TGG - chr7_4:19661276-19661295 Msa1143810:intron 35.0%
GGCATTAATGAAATCGGTTA+TGG + chr7_4:19661422-19661441 None:intergenic 35.0%
! CTACTAACTATCTGTTGCTT+TGG - chr7_4:19661490-19661509 Msa1143810:intron 35.0%
GAGATATGTTGCACTTACAT+TGG - chr7_4:19661553-19661572 Msa1143810:intron 35.0%
TGTTTCGGATTAAGAAGAGA+TGG - chr7_4:19662012-19662031 Msa1143810:CDS 35.0%
GTTTCGGATTAAGAAGAGAT+GGG - chr7_4:19662013-19662032 Msa1143810:CDS 35.0%
AAATTGCAGGAAATTTCGGT+AGG + chr7_4:19662053-19662072 None:intergenic 35.0%
TATTCTGCAAAGGTGACATT+TGG - chr7_4:19662102-19662121 Msa1143810:CDS 35.0%
AGAGTGAGATAAGTGACTAG+TGG - chr7_4:19658751-19658770 Msa1143810:three_prime_UTR 40.0%
GAGTGAGATAAGTGACTAGT+GGG - chr7_4:19658752-19658771 Msa1143810:three_prime_UTR 40.0%
CCATAAAATCCAATCCTCAC+CGG - chr7_4:19658821-19658840 Msa1143810:three_prime_UTR 40.0%
!! AAGATATGGTTTGTTGACGG+CGG + chr7_4:19658873-19658892 None:intergenic 40.0%
GAGGCTGTCCAAAAATTTAC+AGG + chr7_4:19658973-19658992 None:intergenic 40.0%
TTCGATATGAAGCTGATCTG+AGG + chr7_4:19659047-19659066 None:intergenic 40.0%
!! AACTCTTAACTAGAGCACTG+TGG + chr7_4:19659100-19659119 None:intergenic 40.0%
GTTAAGAGTTCCATTGACGT+TGG - chr7_4:19659110-19659129 Msa1143810:CDS 40.0%
TCAACAAGGAGAGGTTACAA+TGG - chr7_4:19659172-19659191 Msa1143810:CDS 40.0%
TGATAGTTGAAGTGCATAGC+CGG + chr7_4:19659216-19659235 None:intergenic 40.0%
GCAACTTTCAGATTTCCTCT+AGG - chr7_4:19659330-19659349 Msa1143810:intron 40.0%
TGTAACGAAACTTCACCTAG+AGG + chr7_4:19659348-19659367 None:intergenic 40.0%
TTCGTTACAAGAGAAAGAGG+AGG - chr7_4:19659359-19659378 Msa1143810:intron 40.0%
TCTGTCAGTGGGATTCTTAA+AGG - chr7_4:19659423-19659442 Msa1143810:intron 40.0%
GAAGTTAAGATACCGCTACA+AGG - chr7_4:19659494-19659513 Msa1143810:intron 40.0%
! TTTGACGGGAGAGAAAGTAT+GGG + chr7_4:19659678-19659697 None:intergenic 40.0%
ATTTGACGGGAGAGAAAGTA+TGG + chr7_4:19659679-19659698 None:intergenic 40.0%
AAAATACAGCCTCAGGAAGT+AGG - chr7_4:19659979-19659998 Msa1143810:intron 40.0%
!! TGTGTAGAGTAGCTTTGGAT+GGG + chr7_4:19660024-19660043 None:intergenic 40.0%
!! TTGTGTAGAGTAGCTTTGGA+TGG + chr7_4:19660025-19660044 None:intergenic 40.0%
! AACTTGATAATACGGGGATG+TGG - chr7_4:19660202-19660221 Msa1143810:intron 40.0%
! ACTTGATAATACGGGGATGT+GGG - chr7_4:19660203-19660222 Msa1143810:intron 40.0%
! GGTGTTTCCACTTACCTTTT+TGG - chr7_4:19661152-19661171 Msa1143810:intron 40.0%
TCTTTGGCCAAAAAGGTAAG+TGG + chr7_4:19661162-19661181 None:intergenic 40.0%
! TAGAGCATCTTTGGCCAAAA+AGG + chr7_4:19661169-19661188 None:intergenic 40.0%
TTTGGCCAAAGATGCTCTAT+AGG - chr7_4:19661170-19661189 Msa1143810:intron 40.0%
AGCTCGTCTCCTTACTAATA+TGG - chr7_4:19661222-19661241 Msa1143810:intron 40.0%
! TAAAGCTGGTTATGATTCGG+AGG - chr7_4:19661340-19661359 Msa1143810:intron 40.0%
AAATGAGACACGTACCCAAA+GGG + chr7_4:19661384-19661403 None:intergenic 40.0%
AAAATGAGACACGTACCCAA+AGG + chr7_4:19661385-19661404 None:intergenic 40.0%
!! TCAACAGGAGTATTCACAGA+TGG + chr7_4:19661443-19661462 None:intergenic 40.0%
!! TAACTATCTGTTGCTTTGGG+TGG - chr7_4:19661494-19661513 Msa1143810:intron 40.0%
TGCTTCCTTCCTGCATATAA+AGG - chr7_4:19661606-19661625 Msa1143810:CDS 40.0%
AGAAGAGATGGGACATTTGA+TGG - chr7_4:19662024-19662043 Msa1143810:CDS 40.0%
TGAGATAAGTGACTAGTGGG+TGG - chr7_4:19658755-19658774 Msa1143810:three_prime_UTR 45.0%
! CCGGTGAGGATTGGATTTTA+TGG + chr7_4:19658824-19658843 None:intergenic 45.0%
TAAAATCCAATCCTCACCGG+CGG - chr7_4:19658824-19658843 Msa1143810:three_prime_UTR 45.0%
! GAACTCGGTGGTAATTCTGA+GGG + chr7_4:19658916-19658935 None:intergenic 45.0%
! TATGAAGCTGATCTGAGGCT+CGG + chr7_4:19659042-19659061 None:intergenic 45.0%
GCACCAGTGAGTTTGAATCT+GGG + chr7_4:19659137-19659156 None:intergenic 45.0%
AGCACCAGTGAGTTTGAATC+TGG + chr7_4:19659138-19659157 None:intergenic 45.0%
CATGATGTCAAGGCTCAACA+AGG - chr7_4:19659158-19659177 Msa1143810:CDS 45.0%
ATAGTTGAAGTGCATAGCCG+GGG + chr7_4:19659214-19659233 None:intergenic 45.0%
GATAGTTGAAGTGCATAGCC+GGG + chr7_4:19659215-19659234 None:intergenic 45.0%
AAGAATCCCACTGACAGACA+AGG + chr7_4:19659421-19659440 None:intergenic 45.0%
! TGTCATTTGCCTTCAAGCGT+AGG - chr7_4:19659703-19659722 Msa1143810:intron 45.0%
TTTGCCTTCAAGCGTAGGTT+TGG - chr7_4:19659708-19659727 Msa1143810:intron 45.0%
AAGACCAAACCTACGCTTGA+AGG + chr7_4:19659715-19659734 None:intergenic 45.0%
TTGTTCCTACCTACTTCCTG+AGG + chr7_4:19659991-19660010 None:intergenic 45.0%
! CTTGATAATACGGGGATGTG+GGG - chr7_4:19660204-19660223 Msa1143810:intron 45.0%
ACTACAATGCAAGCACCAAC+TGG - chr7_4:19660870-19660889 Msa1143810:intron 45.0%
AGGGCTCAAATGAGTGTCTT+AGG + chr7_4:19661126-19661145 None:intergenic 45.0%
GCTGTCTACAAGCATACCTA+TGG - chr7_4:19661302-19661321 Msa1143810:intron 45.0%
! GTGACACATTAGCTTCCTTC+AGG - chr7_4:19661890-19661909 Msa1143810:CDS 45.0%
! CACATTAGCTTCCTTCAGGT+TGG - chr7_4:19661894-19661913 Msa1143810:CDS 45.0%
!! TTCCTTCAGGTTGGTGATGA+AGG - chr7_4:19661903-19661922 Msa1143810:CDS 45.0%
!! TTCAGGTTGGTGATGAAGGT+GGG - chr7_4:19661907-19661926 Msa1143810:CDS 45.0%
! TCCAAGTCCATCTAGTTCCT+TGG - chr7_4:19662139-19662158 Msa1143810:CDS 45.0%
! AAGTCCATCTAGTTCCTTGG+CGG - chr7_4:19662142-19662161 Msa1143810:CDS 45.0%
!! TCAATTATTAAAAAAAAATA+TGG - chr7_4:19662078-19662097 Msa1143810:CDS 5.0%
!! CAATTATTAAAAAAAAATAT+GGG - chr7_4:19662079-19662098 Msa1143810:CDS 5.0%
! GATAAGTGACTAGTGGGTGG+TGG - chr7_4:19658758-19658777 Msa1143810:three_prime_UTR 50.0%
! GTGGAGATGGATTCAGCAAC+CGG - chr7_4:19658777-19658796 Msa1143810:three_prime_UTR 50.0%
!! ATATGGTTTGTTGACGGCGG+CGG + chr7_4:19658870-19658889 None:intergenic 50.0%
! CGAACTCGGTGGTAATTCTG+AGG + chr7_4:19658917-19658936 None:intergenic 50.0%
TGTGGTCTTCAAGGTCGTAG+TGG + chr7_4:19659082-19659101 None:intergenic 50.0%
!! CTAGAGCACTGTGGTCTTCA+AGG + chr7_4:19659091-19659110 None:intergenic 50.0%
! GAATCTGGGACCAACGTCAA+TGG + chr7_4:19659123-19659142 None:intergenic 50.0%
GGTCCCAGATTCAAACTCAC+TGG - chr7_4:19659131-19659150 Msa1143810:CDS 50.0%
CACTGGTGCTCATGATGTCA+AGG - chr7_4:19659148-19659167 Msa1143810:CDS 50.0%
TGTCAAGGCTCAACAAGGAG+AGG - chr7_4:19659163-19659182 Msa1143810:CDS 50.0%
GTTGCTAATATCGCTGACCC+CGG - chr7_4:19659194-19659213 Msa1143810:intron 50.0%
GAACATACCAATCCAGCGGA+TGG + chr7_4:19659248-19659267 None:intergenic 50.0%
TACAGCCTCAGGAAGTAGGT+AGG - chr7_4:19659983-19660002 Msa1143810:intron 50.0%
! TATGATTCGGAGGTTCGCCT+TGG - chr7_4:19661350-19661369 Msa1143810:intron 50.0%
CACCTTCATCACCAACCTGA+AGG + chr7_4:19661908-19661927 None:intergenic 50.0%
!! CTTCAGGTTGGTGATGAAGG+TGG - chr7_4:19661906-19661925 Msa1143810:CDS 50.0%
! GCCAAGGAACTAGATGGACT+TGG + chr7_4:19662143-19662162 None:intergenic 50.0%
!! TGACTAGTGGGTGGTGGAGA+TGG - chr7_4:19658764-19658783 Msa1143810:three_prime_UTR 55.0%
! ATTCTGAGGGCAGGCCTACT+CGG + chr7_4:19658903-19658922 None:intergenic 55.0%
! TCGGTGGTAATTCTGAGGGC+AGG + chr7_4:19658912-19658931 None:intergenic 55.0%
TGCGCTTTCGCTGTCGAACT+CGG + chr7_4:19658931-19658950 None:intergenic 55.0%
! CAAGGTCGTAGTGGAGGCTA+AGG + chr7_4:19659073-19659092 None:intergenic 55.0%
GGTCTTCAAGGTCGTAGTGG+AGG + chr7_4:19659079-19659098 None:intergenic 55.0%
ACCAATCCAGCGGATGGAAG+TGG + chr7_4:19659242-19659261 None:intergenic 55.0%
AGAGAAAGAGGAGGAGCAGC+AGG - chr7_4:19659368-19659387 Msa1143810:intron 55.0%
TGTCTGCACTGCCCACTACA+AGG - chr7_4:19659461-19659480 Msa1143810:intron 55.0%
!! AGGGCACCGACAAGAGAACA+AGG - chr7_4:19661092-19661111 Msa1143810:intron 55.0%
CACACCGCCAAGGAACTAGA+TGG + chr7_4:19662149-19662168 None:intergenic 55.0%
! CATCTAGTTCCTTGGCGGTG+TGG - chr7_4:19662147-19662166 Msa1143810:CDS 55.0%
CAACTACCGCCGGTGAGGAT+TGG + chr7_4:19658833-19658852 None:intergenic 60.0%
AGGATCAACTACCGCCGGTG+AGG + chr7_4:19658838-19658857 None:intergenic 60.0%
GGCAGAGGATCAACTACCGC+CGG + chr7_4:19658843-19658862 None:intergenic 60.0%
GCTTTCGCTGTCGAACTCGG+TGG + chr7_4:19658928-19658947 None:intergenic 60.0%
TCAACGCCACTTCCATCCGC+TGG - chr7_4:19659233-19659252 Msa1143810:intron 60.0%
GCCACTTCCATCCGCTGGAT+TGG - chr7_4:19659238-19659257 Msa1143810:intron 60.0%
GAAAGAGGAGGAGCAGCAGG+AGG - chr7_4:19659371-19659390 Msa1143810:intron 60.0%
ATTCGGAGGTTCGCCTTGGC+TGG - chr7_4:19661354-19661373 Msa1143810:intron 60.0%
TTCGGAGGTTCGCCTTGGCT+GGG - chr7_4:19661355-19661374 Msa1143810:CDS 60.0%
CCTTGGCTGGGCATCCCTTT+GGG - chr7_4:19661367-19661386 Msa1143810:CDS 60.0%
TAGTTCCTTGGCGGTGTGGC+TGG - chr7_4:19662151-19662170 Msa1143810:CDS 60.0%
!! TGGTTTGTTGACGGCGGCGG+CGG + chr7_4:19658867-19658886 None:intergenic 65.0%
AGAGGAGGAGCAGCAGGAGG+AGG - chr7_4:19659374-19659393 Msa1143810:intron 65.0%
GCCTTGGCTGGGCATCCCTT+TGG - chr7_4:19661366-19661385 Msa1143810:CDS 65.0%
CCCAAAGGGATGCCCAGCCA+AGG + chr7_4:19661370-19661389 None:intergenic 65.0%
TCTAGCCAGCCACACCGCCA+AGG + chr7_4:19662159-19662178 None:intergenic 65.0%
TTTGTTGACGGCGGCGGCGG+CGG + chr7_4:19658864-19658883 None:intergenic 70.0%
! GACGGCGGCGGCGGCGGCAG+AGG + chr7_4:19658858-19658877 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 19658723 19662380 19658723 ID=Msa1143810;Name=Msa1143810
chr7_4 mRNA 19658723 19662380 19658723 ID=Msa1143810-mRNA-1;Parent=Msa1143810;Name=Msa1143810-mRNA-1;_AED=0.08;_eAED=0.08;_QI=60|1|1|1|1|1|5|337|338
chr7_4 exon 19658723 19659191 19658723 ID=Msa1143810-mRNA-1:exon:4485;Parent=Msa1143810-mRNA-1
chr7_4 exon 19659715 19659835 19659715 ID=Msa1143810-mRNA-1:exon:4484;Parent=Msa1143810-mRNA-1
chr7_4 exon 19661355 19661449 19661355 ID=Msa1143810-mRNA-1:exon:4483;Parent=Msa1143810-mRNA-1
chr7_4 exon 19661588 19661779 19661588 ID=Msa1143810-mRNA-1:exon:4482;Parent=Msa1143810-mRNA-1
chr7_4 exon 19661844 19662380 19661844 ID=Msa1143810-mRNA-1:exon:4481;Parent=Msa1143810-mRNA-1
chr7_4 five_prime_UTR 19662321 19662380 19662321 ID=Msa1143810-mRNA-1:five_prime_utr;Parent=Msa1143810-mRNA-1
chr7_4 CDS 19661844 19662320 19661844 ID=Msa1143810-mRNA-1:cds;Parent=Msa1143810-mRNA-1
chr7_4 CDS 19661588 19661779 19661588 ID=Msa1143810-mRNA-1:cds;Parent=Msa1143810-mRNA-1
chr7_4 CDS 19661355 19661449 19661355 ID=Msa1143810-mRNA-1:cds;Parent=Msa1143810-mRNA-1
chr7_4 CDS 19659715 19659835 19659715 ID=Msa1143810-mRNA-1:cds;Parent=Msa1143810-mRNA-1
chr7_4 CDS 19659060 19659191 19659060 ID=Msa1143810-mRNA-1:cds;Parent=Msa1143810-mRNA-1
chr7_4 three_prime_UTR 19658723 19659059 19658723 ID=Msa1143810-mRNA-1:three_prime_utr;Parent=Msa1143810-mRNA-1
Gene Sequence

>Msa1143810

ATGGATTCAGCAACCGGAAACCCTAATAATTACACGCTCCATAAAATCCAATCCTCACCGGCGGTAGTTGATCCTCTGCCGCCGCCGCCGCCGTCAACAAACCATATCTTGTCATTTCCGAGTAGGCCTGCCCTCAGAATTACCACCGAGTTCGACAGCGAAAGCGCAAACTTCTTCCACAAAGTTTCCTGTAAATTTTTGGACAGCCTCGCCAAATTGAAATTATCTTTTCAGAACAACAGTAAAGGCGATATCTCCGAGCCTCAGATCAGCTTCATATCGAAGCACCTTAGCCTCCACTACGACCTTGAAGACCACAGTGCTCTAGTTAAGAGTTCCATTGACGTTGGTCCCAGATTCAAACTCACTGGTGCTCATGATGTCAAGGCTCAACAAGGAGAGGTTACAATGGTTGCTAATATCGCTGACCCCGGCTATGCACTTCAACTATCAACGCCACTTCCATCCGCTGGATTGCCAAAAGCAACTTTCAGATTTCCTCTAGGTGAAGTTTCGTTACAAGAGAAAGAGGAGGAGCAGCAGGAGGAGGAACAAGTCAAGATAAAAAATTCCTTGTCTGTCAGTGGGATTCTTAAAGGTCAATTTTTGAATGGTGTCTGCACTGCCCACTACAAGGATGATGAATTGAAGTTAAGATACCGCTACAAGGACGACGAGATGTCATTTCTTCCCATACTTTCTCTCCCGTCAAATGATTTGTCATTTGCCTTCAAGCGTAGGTTTGGTCTTTCTGACAAGTTAAGTTACTGGTACAATTGCGATTCGAACTATTGGAGTGCTGTCTACAAGCATACCTATGGTGAAGATTTCAAATTTAAAGCTGGTTATGATTCGGAGGTTCGCCTTGGCTGGGCATCCCTTTGGGTTGGTGATGAAGGTGGGAAAGCAAAAACAGCTCCAATGAAGATGAAAGTTCAATTCATGCTTCAAGTGCCACAAGATGACATAAAATCTTCAGTTTTGATGTTTCGGATTAAGAAGAGATGGGACATTTGA

Protein sequence

>Msa1143810

MDSATGNPNNYTLHKIQSSPAVVDPLPPPPPSTNHILSFPSRPALRITTEFDSESANFFHKVSCKFLDSLAKLKLSFQNNSKGDISEPQISFISKHLSLHYDLEDHSALVKSSIDVGPRFKLTGAHDVKAQQGEVTMVANIADPGYALQLSTPLPSAGLPKATFRFPLGEVSLQEKEEEQQEEEQVKIKNSLSVSGILKGQFLNGVCTAHYKDDELKLRYRYKDDEMSFLPILSLPSNDLSFAFKRRFGLSDKLSYWYNCDSNYWSAVYKHTYGEDFKFKAGYDSEVRLGWASLWVGDEGGKAKTAPMKMKVQFMLQVPQDDIKSSVLMFRIKKRWDI*