AlfalfaGEDB | Msa0457600

M. sativa cultivar zhongmu-4 / Msa0457600

KEGG: K08910
GO: GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009645 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0019904 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0080167 GO:0097159 GO:1901363
PFAM: PF00504.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0457600	XP_013459282.1	99.209	253	2	0	1	253	1	253	0.0	517

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0457600	sp\|Q9SQL2\|CB24_PEA	94.821	251	13	0	1	251	1	251	1.11e-176	488

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0457600	B7FJY9	99.209	253	2	0	1	253	1	253	0.0	517

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000610	Msa0457600	0.844290	8.286049e-59	-8.615850e-47
Msa0000800	Msa0457600	-0.838392	2.956046e-57	-8.615850e-47
Msa0001040	Msa0457600	0.818271	2.138142e-52	-8.615850e-47
Msa0001510	Msa0457600	0.898448	5.252009e-77	-8.615850e-47
Msa0001540	Msa0457600	0.814262	1.684575e-51	-8.615850e-47
Msa0001550	Msa0457600	0.832601	8.614013e-56	-8.615850e-47
Msa0002110	Msa0457600	0.880989	3.482587e-70	-8.615850e-47
Msa0002690	Msa0457600	0.932115	1.381310e-94	-8.615850e-47
Msa0002700	Msa0457600	0.928599	2.300396e-92	-8.615850e-47
Msa0003340	Msa0457600	0.870471	1.422841e-66	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0457600	MtrunA17_Chr3g0092091	99.209	253	2	0	1	253	1	253	0.0	517
Msa0457600	MtrunA17_Chr8g0345631	50.000	244	112	5	15	250	25	266	3.22e-75	229
Msa0457600	MtrunA17_Chr2g0301081	51.724	203	92	2	56	252	65	267	4.58e-68	211
Msa0457600	MtrunA17_Chr3g0133901	50.725	207	94	4	52	250	57	263	3.16e-65	204
Msa0457600	MtrunA17_Chr2g0296081	93.103	87	6	0	167	253	19	105	1.65e-54	171
Msa0457600	MtrunA17_Chr5g0448411	42.279	272	111	11	18	249	7	272	2.51e-48	160
Msa0457600	MtrunA17_Chr5g0448421	40.727	275	127	10	2	249	9	274	8.44e-48	159
Msa0457600	MtrunA17_Chr6g0462031	39.381	226	106	7	38	249	30	238	6.16e-43	145
Msa0457600	MtrunA17_Chr6g0476641	38.614	202	100	5	63	251	91	281	8.88e-33	120
Msa0457600	MtrunA17_Chr1g0157481	37.736	212	100	8	63	250	125	328	1.80e-32	121

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0457600	AT3G47470.1	88.446	251	28	1	1	250	1	251	3.00e-166	459
Msa0457600	AT3G61470.1	52.703	222	96	3	38	250	34	255	1.63e-74	227
Msa0457600	AT1G45474.2	51.905	210	92	4	49	249	42	251	3.22e-68	211
Msa0457600	AT1G45474.1	51.905	210	92	4	49	249	42	251	3.22e-68	211
Msa0457600	AT1G19150.1	44.681	235	122	2	24	250	34	268	1.17e-66	208
Msa0457600	AT1G61520.3	44.978	229	93	9	48	249	48	270	2.74e-46	155
Msa0457600	AT1G61520.1	44.978	229	93	9	48	249	48	270	2.74e-46	155
Msa0457600	AT1G61520.2	46.154	208	79	9	69	249	14	215	2.50e-43	146
Msa0457600	AT3G54890.1	41.176	204	90	6	55	245	47	233	4.42e-42	144
Msa0457600	AT3G08940.2	31.359	287	115	8	23	250	22	285	4.67e-31	116

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Find 127 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGCTTTCTAAGTGGC+GGG	0.565209	3_3:-52624910	None:intergenic
AAACCCTCTGGAAGTCACAT+TGG	0.563919	3_3:-52625448	None:intergenic
AAAGAGAAGGAAATTGCTAA+TGG	0.501630	3_3:+52624173	Msa0457600:CDS
AAATTACCAACTTGGTTCAC+AGG	0.463934	3_3:+52625166	Msa0457600:three_prime_UTR
AACATAGGCTTTCATGTCAT+TGG	0.323632	3_3:-52624675	None:intergenic
AACCTTGATTTCAAACCACA+TGG	0.619985	3_3:-52622828	None:intergenic
AACGTTGATGATTCCAATGT+TGG	0.527016	3_3:-52623919	None:intergenic
AACTCTGGAAGCTAAAGAGA+AGG	0.599977	3_3:+52624160	Msa0457600:CDS
AAGAAAGGAGAGTGGTTGCC+TGG	0.478204	3_3:+52622939	Msa0457600:CDS
AAGCAATACAGCTTGCCAAA+GGG	0.573830	3_3:+52624089	Msa0457600:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTAGGAATAATAGTAGTAG+TGG	-	chr3_3:52622758-52622777	None:intergenic	30.0%
TTATTCCTAGTAGTTGAACA+TGG	+	chr3_3:52622767-52622786	Msa0457600:exon	30.0%
AGTATGACACTAAAACATGT+CGG	+	chr3_3:52623153-52623172	Msa0457600:intron	30.0%
TATGCATAAGCTCAACTTAA+GGG	-	chr3_3:52623235-52623254	None:intergenic	30.0%
TTTAAGTGTACACTTGATGA+AGG	+	chr3_3:52623668-52623687	Msa0457600:intron	30.0%
AAAGAGAAGGAAATTGCTAA+TGG	+	chr3_3:52624173-52624192	Msa0457600:CDS	30.0%
CATCAAAGTCTTTGCTTAAA+TGG	+	chr3_3:52624234-52624253	Msa0457600:intron	30.0%
TGTGTATTTCAAATGTTTGC+AGG	+	chr3_3:52624499-52624518	Msa0457600:intron	30.0%
GTGTATTTCAAATGTTTGCA+GGG	+	chr3_3:52624500-52624519	Msa0457600:intron	30.0%
CTTTCAAAATTCATCCATTC+AGG	-	chr3_3:52624714-52624733	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	52622701	52625475	52622701	ID=Msa0457600;Name=Msa0457600
chr3_3	mRNA	52622701	52625475	52622701	ID=Msa0457600-mRNA-1;Parent=Msa0457600;Name=Msa0457600-mRNA-1;_AED=0.01;_eAED=0.01;_QI=85\|1\|1\|1\|1\|1\|3\|815\|253
chr3_3	exon	52622701	52622991	52622701	ID=Msa0457600-mRNA-1:exon:10136;Parent=Msa0457600-mRNA-1
chr3_3	exon	52623779	52624194	52623779	ID=Msa0457600-mRNA-1:exon:10137;Parent=Msa0457600-mRNA-1
chr3_3	exon	52624521	52625475	52624521	ID=Msa0457600-mRNA-1:exon:10138;Parent=Msa0457600-mRNA-1
chr3_3	five_prime_UTR	52622701	52622785	52622701	ID=Msa0457600-mRNA-1:five_prime_utr;Parent=Msa0457600-mRNA-1
chr3_3	CDS	52622786	52622991	52622786	ID=Msa0457600-mRNA-1:cds;Parent=Msa0457600-mRNA-1
chr3_3	CDS	52623779	52624194	52623779	ID=Msa0457600-mRNA-1:cds;Parent=Msa0457600-mRNA-1
chr3_3	CDS	52624521	52624660	52624521	ID=Msa0457600-mRNA-1:cds;Parent=Msa0457600-mRNA-1
chr3_3	three_prime_UTR	52624661	52625475	52624661	ID=Msa0457600-mRNA-1:three_prime_utr;Parent=Msa0457600-mRNA-1

Gene Sequence

>Msa0457600

ATGGCCACTGTTACTACACAGGCTTCTGCAGCCATTTTCCGGCCATGTGGTTTGAAATCAAGGTTCCTTACTGGTTCTTCTGGTAAGTTGAACAGAGAAGTGGCTATTAGGCCAATGGGTTGTTCACCTTCTGCTTCTTTTAAGGTTGAAGCTAAGAAAGGAGAGTGGTTGCCTGGTTTGGCTTCCCCTGGTTACCTCACTGGCAGTCTTCCCGGAGACAATGGATTCGATCCATTGGGACTAGCCGAGGATCCAGAGAACTTGAAGTGGTTTGTTCAAGCCGAGCTTGTGAATGGACGTTGGGCTATGTTAGGTGTTGCAGGGATGTTACTCCCTGAAGTCTTCACCAACATTGGAATCATCAACGTTCCAAAATGGTACGATGCAGGGAAAGAAGAATATTTTGCTTCATCTTCAACACTCTTTGTGATCGAGTTCATTTTGTTCCATTACGTCGAGATTAGAAGATGGCAAGACATTAAGAACCCTGGTAGTGTTAACCAAGATCCTATCTTCAAGCAATACAGCTTGCCAAAGGGTGAGGTTGGTTACCCCGGTGGAATTTTTAACCCTTTGAACTTTGCACCAACTCTGGAAGCTAAAGAGAAGGAAATTGCTAATGGGAGATTGGCAATGTTAGCATTCTTGGGATTTGTCATTCAGCACAATGTGACAGGAAAAGGACCATTTGATAACCTCTTGCAGCACCTTTCAGACCCATGGCACAACACCATTGTTCAAACACTAAGTGGGGGCAACTAA

Protein sequence

>Msa0457600

MATVTTQASAAIFRPCGLKSRFLTGSSGKLNREVAIRPMGCSPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTNIGIINVPKWYDAGKEEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFVIQHNVTGKGPFDNLLQHLSDPWHNTIVQTLSGGN*