AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1408860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1408860 MtrunA17_Chr5g0398281 96.508 315 11 0 1 315 1 315 0.0 624
Msa1408860 MtrunA17_Chr4g0057081 73.651 315 72 5 6 311 57 369 8.59e-158 445
Msa1408860 MtrunA17_Chr2g0328301 28.421 190 102 5 131 294 67 248 1.18e-13 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1408860 AT4G22890.1 74.823 282 69 2 34 315 45 324 4.03e-157 442
Msa1408860 AT4G22890.3 74.823 282 69 2 34 315 45 324 4.03e-157 442
Msa1408860 AT4G22890.5 74.113 282 69 1 34 315 45 322 4.99e-157 442
Msa1408860 AT4G22890.4 74.113 282 68 1 34 315 45 321 5.04e-157 442
Msa1408860 AT4G11960.1 68.987 316 89 5 6 315 1 313 4.70e-151 426
Msa1408860 AT4G11960.2 76.494 251 59 0 65 315 46 296 1.34e-145 412
Msa1408860 AT4G22890.2 74.806 258 63 2 34 291 45 300 2.25e-142 404
Msa1408860 AT5G59400.1 30.481 187 104 4 131 294 75 258 2.66e-14 72.4
Msa1408860 AT5G59400.2 30.539 167 93 3 131 274 75 241 1.74e-11 63.9

Find 118 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAATTTAGAAAATTAATTT+TGG 0.192244 tig0023420:-19070 Msa1408860:five_prime_UTR
ACTGAAAACACCTCCTTCTT+TGG 0.198021 tig0023420:-16476 Msa1408860:CDS
CTGCCGTTCCTTTCATTCTA+TGG 0.206904 tig0023420:-16648 Msa1408860:CDS
TCTAACTGTTGACTATTTAA+AGG 0.225624 tig0023420:-17427 Msa1408860:CDS
TATGTCATTCATTAGTTATT+AGG 0.244471 tig0023420:-15658 Msa1408860:three_prime_UTR
ACTTCATTGCCTTTAACTAA+TGG 0.264836 tig0023420:+15886 None:intergenic
CTTCTCACATTTGACTTTGT+TGG 0.266908 tig0023420:+16421 None:intergenic
TGTTGATCGGAGGTGGCCTT+AGG 0.316920 tig0023420:+18589 None:intergenic
CCACCGGCATTGAATTGAAT+TGG 0.333464 tig0023420:+18652 None:intergenic
CCGGCAACTGTGATTGCATT+AGG 0.339486 tig0023420:-17387 Msa1408860:CDS
CATTGAAGGTGAATATTGTT+TGG 0.343763 tig0023420:+18840 None:intergenic
ATTAATAAAGAATATTGTAT+TGG 0.352979 tig0023420:+18776 None:intergenic
TGATCCTTTCATATATATCT+TGG 0.353922 tig0023420:-19105 Msa1408860:five_prime_UTR
CCTCCCCTCTTCAGCTGGCA+AGG 0.379946 tig0023420:-18457 Msa1408860:intron
CCTAATGCAATCACAGTTGC+CGG 0.384531 tig0023420:+17387 None:intergenic
GTGGAGAATGTTGGTCTTGA+AGG 0.390699 tig0023420:+18694 None:intergenic
AGCTAGTTCTTCTAATTATG+AGG 0.392610 tig0023420:+18808 None:intergenic
CCTATTTGTGCTTTCCCCTA+AGG 0.397809 tig0023420:-18605 Msa1408860:CDS
TTCTTCCTTGATGATGTGAC+TGG 0.398806 tig0023420:-16858 Msa1408860:CDS
CTGAAAACACCTCCTTCTTT+GGG 0.404488 tig0023420:-16475 Msa1408860:CDS
AATGTCAACCATTGGAGTTA+AGG 0.405085 tig0023420:+15752 None:intergenic
AAGTAGTACATTAATTATAT+AGG 0.405494 tig0023420:-19046 Msa1408860:five_prime_UTR
GCATCTATTGCTTATGTGTC+TGG 0.406902 tig0023420:-18015 Msa1408860:CDS
AAAATGAAACTGAATGGTTC+TGG 0.407016 tig0023420:+16682 None:intergenic
AACTCTTTATCACTCATGAT+TGG 0.413038 tig0023420:+17988 None:intergenic
CCTTAGGGGAAAGCACAAAT+AGG 0.420342 tig0023420:+18605 None:intergenic
ACTTATGCAGTACTTCCTTC+TGG 0.426241 tig0023420:+16229 None:intergenic
TGAAACAAGAGGAGAAGAAA+GGG 0.435558 tig0023420:-18921 Msa1408860:five_prime_UTR
GTTGATCGGAGGTGGCCTTA+GGG 0.446924 tig0023420:+18590 None:intergenic
CTCACATTTGACTTTGTTGG+TGG 0.447601 tig0023420:+16424 None:intergenic
TGAATTAAAACTGAAGCTAA+AGG 0.449191 tig0023420:-17962 Msa1408860:intron
GTGAAACAAGAGGAGAAGAA+AGG 0.458754 tig0023420:-18922 Msa1408860:five_prime_UTR
AATAAAGAATATTGTATTGG+TGG 0.461111 tig0023420:+18779 None:intergenic
CTCTTCAGCTGGCAAGGTTG+AGG 0.463924 tig0023420:-18451 Msa1408860:intron
TTAAGTTATCACGTGGGCAT+AGG 0.471446 tig0023420:+19018 None:intergenic
TGAATAGGCATTCTACTATG+AGG 0.480147 tig0023420:-18242 Msa1408860:intron
GACTAACGTGTGGAGGGACT+TGG 0.485270 tig0023420:+18885 None:intergenic
TGCTCACTCTGGAACACCAT+TGG 0.491651 tig0023420:-15858 Msa1408860:three_prime_UTR
GCACAAATAGGCCTCGGCGA+AGG 0.498171 tig0023420:+18617 None:intergenic
GAAGGTGAATATTGTTTGGA+GGG 0.500548 tig0023420:+18844 None:intergenic
CACAAATAGGCCTCGGCGAA+GGG 0.502204 tig0023420:+18618 None:intergenic
TTGACATTAATTAACATACT+TGG 0.502422 tig0023420:-15737 Msa1408860:three_prime_UTR
GAATATTGTATTGGTGGTGA+TGG 0.502433 tig0023420:+18785 None:intergenic
CATTAATTAACATACTTGGT+AGG 0.506378 tig0023420:-15733 Msa1408860:three_prime_UTR
AAGGGATGAGTGGCGGCCAC+CGG 0.508999 tig0023420:+18636 None:intergenic
TTCTACTACGAAGACTGCAC+CGG 0.512099 tig0023420:+17707 None:intergenic
AGAAGGGATTAGTTCTCCAT+TGG 0.513240 tig0023420:-15977 Msa1408860:three_prime_UTR
TAAGTTATCACGTGGGCATA+GGG 0.513593 tig0023420:+19019 None:intergenic
AAATTGTGGCAGAGGGTCCC+CGG 0.518295 tig0023420:-17726 Msa1408860:CDS
AACATCAACATCAAAATCCT+AGG 0.518444 tig0023420:+18966 None:intergenic
CATATCATTATTCATGAGAA+GGG 0.525309 tig0023420:-15993 Msa1408860:three_prime_UTR
TGAGGGTATTCATTCATTGA+AGG 0.525774 tig0023420:+18826 None:intergenic
ATGAGGATCCTTAACTCCAA+TGG 0.529643 tig0023420:-15760 Msa1408860:three_prime_UTR
AAGGACTCTAGTAGCAGAAG+TGG 0.532925 tig0023420:+18675 None:intergenic
TGAAGGTGAATATTGTTTGG+AGG 0.533225 tig0023420:+18843 None:intergenic
GGGAAAGCACAAATAGGCCT+CGG 0.534635 tig0023420:+18611 None:intergenic
CAAGTCAAAATGAAACTGAA+TGG 0.534907 tig0023420:+16676 None:intergenic
TTTGGAGGGAAACAAAGATA+AGG 0.535545 tig0023420:+18858 None:intergenic
AAGACCTTGTTGATCGGAGG+TGG 0.538161 tig0023420:+18582 None:intergenic
CAAAGAAAGTATTACTACCT+AGG 0.538190 tig0023420:-18983 Msa1408860:five_prime_UTR
CTGAAACAAACTTGTGGAGG+TGG 0.540197 tig0023420:+15686 None:intergenic
TGTTAATTAATGTCAACCAT+TGG 0.541275 tig0023420:+15744 None:intergenic
AGGGAGTGAAATTGTGGCAG+AGG 0.544360 tig0023420:-17734 Msa1408860:CDS
CGGCATTGAATTGAATTGGA+AGG 0.544410 tig0023420:+18656 None:intergenic
GCATATCATTATTCATGAGA+AGG 0.544610 tig0023420:-15994 Msa1408860:three_prime_UTR
GTAAATAGTTTCTCTACCAA+TGG 0.546890 tig0023420:+15961 None:intergenic
GAATAGGCATTCTACTATGA+GGG 0.550131 tig0023420:-18241 Msa1408860:intron
GGCATTCTACTATGAGGGAA+AGG 0.551864 tig0023420:-18236 Msa1408860:CDS
TGACAATATAGTCCCAAAGA+AGG 0.552001 tig0023420:+16463 None:intergenic
ACTATATTGTCAATTTCAAG+TGG 0.556328 tig0023420:-16452 Msa1408860:CDS
CTTCCAATTCAATTCAATGC+CGG 0.558134 tig0023420:-18655 Msa1408860:CDS
TGAGCAAACCATAGAATGAA+AGG 0.563526 tig0023420:+16640 None:intergenic
TTGATCGGAGGTGGCCTTAG+GGG 0.563797 tig0023420:+18591 None:intergenic
TGGAGAATGTTGGTCTTGAA+GGG 0.565725 tig0023420:+18695 None:intergenic
ATCAAATCAAGAAATTGTCA+AGG 0.566139 tig0023420:-15913 Msa1408860:three_prime_UTR
GCTAGTTCTTCTAATTATGA+GGG 0.566882 tig0023420:+18809 None:intergenic
GGCGCTCCTACTGAAAGTCC+CGG 0.568811 tig0023420:-17406 Msa1408860:CDS
TGAAGTCATTATGCTCACTC+TGG 0.570854 tig0023420:-15869 Msa1408860:three_prime_UTR
GTGCAGTCTTCGTAGTAGAA+AGG 0.571660 tig0023420:-17704 Msa1408860:intron
ATCTCAAAGAAGAACTCATG+TGG 0.574149 tig0023420:-18186 Msa1408860:CDS
CAAATCCAGTCACATCATCA+AGG 0.579365 tig0023420:+16853 None:intergenic
AAAGGCAACTATGTCAAATG+AGG 0.583401 tig0023420:-18218 Msa1408860:CDS
TAAGATAAGACCTTGTTGAT+CGG 0.583501 tig0023420:+18576 None:intergenic
GGCAATGACTAACGTGTGGA+GGG 0.585025 tig0023420:+18879 None:intergenic
TCTACTACGAAGACTGCACC+GGG 0.585139 tig0023420:+17708 None:intergenic
CAGTTGCCGGGACTTTCAGT+AGG 0.588097 tig0023420:+17400 None:intergenic
CCAATTCAATTCAATGCCGG+TGG 0.588629 tig0023420:-18652 Msa1408860:CDS
GATGGAAGGGAGTGAAATTG+TGG 0.591843 tig0023420:-17740 Msa1408860:CDS
AAAGAAGAACTCATGTGGGA+AGG 0.595561 tig0023420:-18181 Msa1408860:CDS
AGGAAGTACTGCATAAGTGA+AGG 0.596142 tig0023420:-16224 Msa1408860:intron
CTAATGCAATCACAGTTGCC+GGG 0.598117 tig0023420:+17388 None:intergenic
AGAAACTATTTACATGTGGA+AGG 0.598825 tig0023420:-15951 Msa1408860:three_prime_UTR
GTAGCAGAAGTGGAGAATGT+TGG 0.602926 tig0023420:+18685 None:intergenic
CTTACCAAGATATATATGAA+AGG 0.608661 tig0023420:+19101 None:intergenic
TAGGGGCCATGTCCTAATTG+TGG 0.612557 tig0023420:-16500 Msa1408860:CDS
AGGCAATGACTAACGTGTGG+AGG 0.617445 tig0023420:+18878 None:intergenic
AGCTAGCTGAAACAAACTTG+TGG 0.618916 tig0023420:+15680 None:intergenic
GGCCTCGGCGAAGGGATGAG+TGG 0.619355 tig0023420:+18626 None:intergenic
GGGAGTGAAATTGTGGCAGA+GGG 0.625703 tig0023420:-17733 Msa1408860:CDS
AACAAACTTGTGGAGGTGGT+AGG 0.630843 tig0023420:+15690 None:intergenic
GTAGAGAAACTATTTACATG+TGG 0.633798 tig0023420:-15955 Msa1408860:three_prime_UTR
GTTATCACGTGGGCATAGGG+TGG 0.634616 tig0023420:+19022 None:intergenic
TAGCTGAAACAAACTTGTGG+AGG 0.634851 tig0023420:+15683 None:intergenic
TCAGTACCACAATTAGGACA+TGG 0.636619 tig0023420:+16494 None:intergenic
CAATATAGTCCCAAAGAAGG+AGG 0.636916 tig0023420:+16466 None:intergenic
TCTCAAAGAAGAACTCATGT+GGG 0.638689 tig0023420:-18185 Msa1408860:CDS
AGATTGATTACATTGCCAGA+AGG 0.638843 tig0023420:-16244 Msa1408860:CDS
CTCGGCGAAGGGATGAGTGG+CGG 0.641648 tig0023420:+18629 None:intergenic
GTATACACATATCAAGCCAA+TGG 0.641751 tig0023420:+15842 None:intergenic
ATAACACACTCTCTCTAACA+TGG 0.645208 tig0023420:+19127 None:intergenic
GATAAGACCTTGTTGATCGG+AGG 0.647194 tig0023420:+18579 None:intergenic
ACGTGATAACTTAAAACATG+AGG 0.649341 tig0023420:-19009 Msa1408860:five_prime_UTR
AAACCATAGAATGAAAGGAA+CGG 0.657593 tig0023420:+16645 None:intergenic
CGCCACTCATCCCTTCGCCG+AGG 0.657673 tig0023420:-18628 Msa1408860:CDS
ATAAGGCAATGACTAACGTG+TGG 0.667599 tig0023420:+18875 None:intergenic
AAGGCCACCTCCGATCAACA+AGG 0.675926 tig0023420:-18586 Msa1408860:intron
TGAGATCAACTATCTGATAG+CGG 0.690835 tig0023420:-16832 Msa1408860:intron
CTACTACGAAGACTGCACCG+GGG 0.817900 tig0023420:+17709 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATAAAGAATATTGTAT+TGG + tig0023420:15960-15979 None:intergenic 10.0%
!!! CTTTATATAATTTTGAAATA+TGG - tig0023420:16879-16898 Msa1408860:intron 10.0%
!!! AGATAGTTATTTTTAATTAT+AGG - tig0023420:18214-18233 Msa1408860:CDS 10.0%
!!! GATAGTTATTTTTAATTATA+GGG - tig0023420:18215-18234 Msa1408860:CDS 10.0%
!!! ATAGTTATTTTTAATTATAG+GGG - tig0023420:18216-18235 Msa1408860:CDS 10.0%
!! AATCAAATTAATATGATATA+TGG - tig0023420:18396-18415 Msa1408860:CDS 10.0%
!! AAGTAGTACATTAATTATAT+AGG - tig0023420:15687-15706 Msa1408860:three_prime_UTR 15.0%
!! TTCTGTTTATTATATTGAAT+AGG - tig0023420:16476-16495 Msa1408860:CDS 15.0%
!! CATAAAAGACATTAAATAAA+AGG - tig0023420:17100-17119 Msa1408860:intron 15.0%
!!! GTTTCTATTTTTACTTTAAT+CGG + tig0023420:17669-17688 None:intergenic 15.0%
!!! AATATATTTTACAGTATTCA+AGG + tig0023420:18545-18564 None:intergenic 15.0%
!! AATAAAGAATATTGTATTGG+TGG + tig0023420:15957-15976 None:intergenic 20.0%
!! TTATGACATTAACAATCTTT+AGG - tig0023420:16182-16201 Msa1408860:intron 20.0%
!! ATACTATTTGTTTCATTCAT+TGG - tig0023420:16236-16255 Msa1408860:CDS 20.0%
!! AATACATGAGTTTACAATAT+TGG - tig0023420:16657-16676 Msa1408860:CDS 20.0%
!!! ACTAATTAATACCCTTTTAT+AGG - tig0023420:17273-17292 Msa1408860:intron 20.0%
!!! AAAAGATTTCTTGATTTTGA+AGG - tig0023420:18137-18156 Msa1408860:intron 20.0%
!!! TTTTTGTAATTTATCTCTGT+TGG - tig0023420:18165-18184 Msa1408860:CDS 20.0%
!! ATGACTTAATAATGTACAAA+AGG + tig0023420:18349-18368 None:intergenic 20.0%
!! TTTATATCTCTAATACATAC+AGG - tig0023420:18717-18736 Msa1408860:CDS 20.0%
!!! TTTTGTTTTTTTGAGTTATG+AGG - tig0023420:18956-18975 Msa1408860:five_prime_UTR 20.0%
!! TTGACATTAATTAACATACT+TGG - tig0023420:18996-19015 Msa1408860:five_prime_UTR 20.0%
!! TATGTCATTCATTAGTTATT+AGG - tig0023420:19075-19094 Msa1408860:five_prime_UTR 20.0%
! TGATCCTTTCATATATATCT+TGG - tig0023420:15628-15647 Msa1408860:three_prime_UTR 25.0%
! CTTACCAAGATATATATGAA+AGG + tig0023420:15635-15654 None:intergenic 25.0%
! TTTGTTGAAAACTTAGTATC+CGG + tig0023420:16208-16227 None:intergenic 25.0%
! ATAACATTCACTGAAGTTAT+TGG + tig0023420:16605-16624 None:intergenic 25.0%
! TGAATTAAAACTGAAGCTAA+AGG - tig0023420:16771-16790 Msa1408860:intron 25.0%
!! GGTTTGATATTTTCATTTCA+TGG - tig0023420:16792-16811 Msa1408860:intron 25.0%
! ATATCTAATAAGAGCTTCAT+CGG - tig0023420:16830-16849 Msa1408860:intron 25.0%
! AATCCATATTGAATCACAAT+TGG + tig0023420:16952-16971 None:intergenic 25.0%
!! TTTCTCTTTTCTTTTACAGA+TGG - tig0023420:16975-16994 Msa1408860:intron 25.0%
! CTGAATTTCAGTATAAATAC+AGG + tig0023420:17164-17183 None:intergenic 25.0%
! TTATACTGAAATTCAGCTTA+AGG - tig0023420:17168-17187 Msa1408860:intron 25.0%
! AACATACATGAATCATTTCA+AGG + tig0023420:17197-17216 None:intergenic 25.0%
! ATCACTGTAAACCTATAAAA+GGG + tig0023420:17287-17306 None:intergenic 25.0%
!! TCTAACTGTTGACTATTTAA+AGG - tig0023420:17306-17325 Msa1408860:intron 25.0%
!! TTTTCAAAGAAATCAATGTC+TGG + tig0023420:17450-17469 None:intergenic 25.0%
!! GAGAACTATAAAGTCTTATA+TGG - tig0023420:17484-17503 Msa1408860:intron 25.0%
! AGTGTACTAGATTTATAACA+AGG + tig0023420:17583-17602 None:intergenic 25.0%
! ATTATCTGCTCTATAATATC+AGG - tig0023420:17849-17868 Msa1408860:intron 25.0%
! ATTCATCTAATGATTGCTAA+AGG - tig0023420:18003-18022 Msa1408860:CDS 25.0%
! AACTATCTTAGCATATGTAA+TGG + tig0023420:18202-18221 None:intergenic 25.0%
! ACTATATTGTCAATTTCAAG+TGG - tig0023420:18281-18300 Msa1408860:intron 25.0%
!! TATGTTGTAGCATAAACTTT+TGG - tig0023420:18572-18591 Msa1408860:intron 25.0%
!! TAGAAATTGGTTTACCTTAT+TGG + tig0023420:18669-18688 None:intergenic 25.0%
! TAGTTACACTAGTTAGAAAT+TGG + tig0023420:18682-18701 None:intergenic 25.0%
! CATATCATTATTCATGAGAA+GGG - tig0023420:18740-18759 Msa1408860:exon 25.0%
! ATCAAATCAAGAAATTGTCA+AGG - tig0023420:18820-18839 Msa1408860:five_prime_UTR 25.0%
! TGTTAATTAATGTCAACCAT+TGG + tig0023420:18992-19011 None:intergenic 25.0%
! CATTAATTAACATACTTGGT+AGG - tig0023420:19000-19019 Msa1408860:five_prime_UTR 25.0%
!!! CATGTTTTAAGTTATCACGT+GGG + tig0023420:15724-15743 None:intergenic 30.0%
!!! TCATGTTTTAAGTTATCACG+TGG + tig0023420:15725-15744 None:intergenic 30.0%
ACGTGATAACTTAAAACATG+AGG - tig0023420:15724-15743 Msa1408860:three_prime_UTR 30.0%
!! CAAAGAAAGTATTACTACCT+AGG - tig0023420:15750-15769 Msa1408860:three_prime_UTR 30.0%
AACATCAACATCAAAATCCT+AGG + tig0023420:15770-15789 None:intergenic 30.0%
GAAAAAGATAGTGAAACAAG+AGG - tig0023420:15801-15820 Msa1408860:three_prime_UTR 30.0%
CATTGAAGGTGAATATTGTT+TGG + tig0023420:15896-15915 None:intergenic 30.0%
! GCTAGTTCTTCTAATTATGA+GGG + tig0023420:15927-15946 None:intergenic 30.0%
! AGCTAGTTCTTCTAATTATG+AGG + tig0023420:15928-15947 None:intergenic 30.0%
CATCATCATCATCATCATAA+TGG - tig0023420:15984-16003 Msa1408860:three_prime_UTR 30.0%
TAAGATAAGACCTTGTTGAT+CGG + tig0023420:16160-16179 None:intergenic 30.0%
! TTTTTGTCTATGCTGCAATA+TGG + tig0023420:16337-16356 None:intergenic 30.0%
AAAAAAGAGAAGAAGTCACT+TGG - tig0023420:16352-16371 Msa1408860:intron 30.0%
! ACAGAACATATGATAATGAG+AGG + tig0023420:16428-16447 None:intergenic 30.0%
! ACAATATTGGTTATTTGTGC+AGG - tig0023420:16670-16689 Msa1408860:CDS 30.0%
TTCTTCTGAGCAAAAATTTC+TGG - tig0023420:16693-16712 Msa1408860:intron 30.0%
AACTCTTTATCACTCATGAT+TGG + tig0023420:16748-16767 None:intergenic 30.0%
GTACCAATTGTGATTCAATA+TGG - tig0023420:16946-16965 Msa1408860:intron 30.0%
! TCTTTTCTTTTACAGATGGA+AGG - tig0023420:16979-16998 Msa1408860:intron 30.0%
! CTTTTCTTTTACAGATGGAA+GGG - tig0023420:16980-16999 Msa1408860:intron 30.0%
ATGCAAATGCTCATAAACAA+TGG + tig0023420:17080-17099 None:intergenic 30.0%
GATCACTGTAAACCTATAAA+AGG + tig0023420:17288-17307 None:intergenic 30.0%
AGTTCATGTTGCATTTGATT+TGG - tig0023420:17409-17428 Msa1408860:CDS 30.0%
TAGAACAACAAATAATGCAG+AGG - tig0023420:17515-17534 Msa1408860:intron 30.0%
AGAACAACAAATAATGCAGA+GGG - tig0023420:17516-17535 Msa1408860:intron 30.0%
! GTATGTGTTGTTAAGCTATT+GGG + tig0023420:17647-17666 None:intergenic 30.0%
!!! CTCAAGTCTTTTTTCAAAAC+TGG + tig0023420:17714-17733 None:intergenic 30.0%
TTGAAAAAAGACTTGAGACA+AGG - tig0023420:17717-17736 Msa1408860:CDS 30.0%
TCTAAATAAGCAATTAGCGA+TGG + tig0023420:17950-17969 None:intergenic 30.0%
AAAATGAAACTGAATGGTTC+TGG + tig0023420:18054-18073 None:intergenic 30.0%
CAAGTCAAAATGAAACTGAA+TGG + tig0023420:18060-18079 None:intergenic 30.0%
!!! CATTCAGTTTCATTTTGACT+TGG - tig0023420:18058-18077 Msa1408860:intron 30.0%
AAACCATAGAATGAAAGGAA+CGG + tig0023420:18091-18110 None:intergenic 30.0%
!!! TGTGAACTTTTTCATAGACA+AGG - tig0023420:18597-18616 Msa1408860:CDS 30.0%
AACACAGTGTATAACCAATA+AGG - tig0023420:18652-18671 Msa1408860:CDS 30.0%
GCATATCATTATTCATGAGA+AGG - tig0023420:18739-18758 Msa1408860:exon 30.0%
GTAAATAGTTTCTCTACCAA+TGG + tig0023420:18775-18794 None:intergenic 30.0%
GTAGAGAAACTATTTACATG+TGG - tig0023420:18778-18797 Msa1408860:five_prime_UTR 30.0%
AGAAACTATTTACATGTGGA+AGG - tig0023420:18782-18801 Msa1408860:five_prime_UTR 30.0%
! CAAGGTTTTCCATTAGTTAA+AGG - tig0023420:18838-18857 Msa1408860:five_prime_UTR 30.0%
ACTTCATTGCCTTTAACTAA+TGG + tig0023420:18850-18869 None:intergenic 30.0%
ATAACACACTCTCTCTAACA+TGG + tig0023420:15609-15628 None:intergenic 35.0%
TGAAACAAGAGGAGAAGAAA+GGG - tig0023420:15812-15831 Msa1408860:three_prime_UTR 35.0%
TTTGGAGGGAAACAAAGATA+AGG + tig0023420:15878-15897 None:intergenic 35.0%
GAAGGTGAATATTGTTTGGA+GGG + tig0023420:15892-15911 None:intergenic 35.0%
TGAAGGTGAATATTGTTTGG+AGG + tig0023420:15893-15912 None:intergenic 35.0%
!! TGAGGGTATTCATTCATTGA+AGG + tig0023420:15910-15929 None:intergenic 35.0%
!! GAATATTGTATTGGTGGTGA+TGG + tig0023420:15951-15970 None:intergenic 35.0%
CTTCCAATTCAATTCAATGC+CGG - tig0023420:16078-16097 Msa1408860:intron 35.0%
GACATTAACAATCTTTAGGC+CGG - tig0023420:16186-16205 Msa1408860:intron 35.0%
TGAATAGGCATTCTACTATG+AGG - tig0023420:16491-16510 Msa1408860:CDS 35.0%
GAATAGGCATTCTACTATGA+GGG - tig0023420:16492-16511 Msa1408860:CDS 35.0%
AAAGGCAACTATGTCAAATG+AGG - tig0023420:16515-16534 Msa1408860:intron 35.0%
ATCTCAAAGAAGAACTCATG+TGG - tig0023420:16547-16566 Msa1408860:intron 35.0%
TCTCAAAGAAGAACTCATGT+GGG - tig0023420:16548-16567 Msa1408860:intron 35.0%
!! AAGGTATCAAGTTGAATCTG+TGG - tig0023420:17048-17067 Msa1408860:intron 35.0%
TCAGTATAAATACAGGACAG+AGG + tig0023420:17157-17176 None:intergenic 35.0%
TCATGCACTCGATTAAAAGA+AGG + tig0023420:17387-17406 None:intergenic 35.0%
GTTCAATGGTTGGAACAAAT+TGG - tig0023420:17541-17560 Msa1408860:intron 35.0%
! GGTATGTGTTGTTAAGCTAT+TGG + tig0023420:17648-17667 None:intergenic 35.0%
ACTTGAGACAAGGTTTATCA+AGG - tig0023420:17727-17746 Msa1408860:CDS 35.0%
GTTTATCAAGGTCGATAGTA+GGG - tig0023420:17739-17758 Msa1408860:CDS 35.0%
TTAGATGAAACAGACCAGTT+TGG - tig0023420:17805-17824 Msa1408860:intron 35.0%
TAGATGAAACAGACCAGTTT+GGG - tig0023420:17806-17825 Msa1408860:intron 35.0%
TGAGATCAACTATCTGATAG+CGG - tig0023420:17901-17920 Msa1408860:intron 35.0%
TGAGCAAACCATAGAATGAA+AGG + tig0023420:18096-18115 None:intergenic 35.0%
! GTGTTTTCAGTACCACAATT+AGG + tig0023420:18248-18267 None:intergenic 35.0%
TGACAATATAGTCCCAAAGA+AGG + tig0023420:18273-18292 None:intergenic 35.0%
! CTTCTCACATTTGACTTTGT+TGG + tig0023420:18315-18334 None:intergenic 35.0%
AGATTGATTACATTGCCAGA+AGG - tig0023420:18489-18508 Msa1408860:intron 35.0%
GTATACACATATCAAGCCAA+TGG + tig0023420:18894-18913 None:intergenic 35.0%
AATGTCAACCATTGGAGTTA+AGG + tig0023420:18984-19003 None:intergenic 35.0%
TAAGTTATCACGTGGGCATA+GGG + tig0023420:15717-15736 None:intergenic 40.0%
TTAAGTTATCACGTGGGCAT+AGG + tig0023420:15718-15737 None:intergenic 40.0%
GTGAAACAAGAGGAGAAGAA+AGG - tig0023420:15811-15830 Msa1408860:three_prime_UTR 40.0%
ATAAGGCAATGACTAACGTG+TGG + tig0023420:15861-15880 None:intergenic 40.0%
!! TGGAGAATGTTGGTCTTGAA+GGG + tig0023420:16041-16060 None:intergenic 40.0%
! CGGCATTGAATTGAATTGGA+AGG + tig0023420:16080-16099 None:intergenic 40.0%
AAAGAAGAACTCATGTGGGA+AGG - tig0023420:16552-16571 Msa1408860:intron 40.0%
GCATCTATTGCTTATGTGTC+TGG - tig0023420:16718-16737 Msa1408860:intron 40.0%
CAATGGTTGGAACAAATTGG+AGG - tig0023420:17544-17563 Msa1408860:intron 40.0%
! CTAGTACACTCGCTTCATTT+TGG - tig0023420:17593-17612 Msa1408860:intron 40.0%
GGTTTATCAAGGTCGATAGT+AGG - tig0023420:17738-17757 Msa1408860:CDS 40.0%
!! TTCTTCCTTGATGATGTGAC+TGG - tig0023420:17875-17894 Msa1408860:intron 40.0%
CAAATCCAGTCACATCATCA+AGG + tig0023420:17883-17902 None:intergenic 40.0%
CAATTAGCGATGGTAGAACA+AGG + tig0023420:17940-17959 None:intergenic 40.0%
TCAGTACCACAATTAGGACA+TGG + tig0023420:18242-18261 None:intergenic 40.0%
ACTGAAAACACCTCCTTCTT+TGG - tig0023420:18257-18276 Msa1408860:intron 40.0%
CTGAAAACACCTCCTTCTTT+GGG - tig0023420:18258-18277 Msa1408860:intron 40.0%
CAATATAGTCCCAAAGAAGG+AGG + tig0023420:18270-18289 None:intergenic 40.0%
! CTCACATTTGACTTTGTTGG+TGG + tig0023420:18312-18331 None:intergenic 40.0%
CCACAGCTGAAGCATAAATT+TGG + tig0023420:18441-18460 None:intergenic 40.0%
CCAAATTTATGCTTCAGCTG+TGG - tig0023420:18438-18457 Msa1408860:CDS 40.0%
ACTTATGCAGTACTTCCTTC+TGG + tig0023420:18507-18526 None:intergenic 40.0%
!! AGGAAGTACTGCATAAGTGA+AGG - tig0023420:18509-18528 Msa1408860:intron 40.0%
!! AGAAGGGATTAGTTCTCCAT+TGG - tig0023420:18756-18775 Msa1408860:five_prime_UTR 40.0%
TGAAGTCATTATGCTCACTC+TGG - tig0023420:18864-18883 Msa1408860:five_prime_UTR 40.0%
ATGAGGATCCTTAACTCCAA+TGG - tig0023420:18973-18992 Msa1408860:five_prime_UTR 40.0%
TAGCTGAAACAAACTTGTGG+AGG + tig0023420:19053-19072 None:intergenic 40.0%
AGCTAGCTGAAACAAACTTG+TGG + tig0023420:19056-19075 None:intergenic 40.0%
!! GTGGAGAATGTTGGTCTTGA+AGG + tig0023420:16042-16061 None:intergenic 45.0%
GTAGCAGAAGTGGAGAATGT+TGG + tig0023420:16051-16070 None:intergenic 45.0%
AAGGACTCTAGTAGCAGAAG+TGG + tig0023420:16061-16080 None:intergenic 45.0%
! CCACCGGCATTGAATTGAAT+TGG + tig0023420:16084-16103 None:intergenic 45.0%
CCAATTCAATTCAATGCCGG+TGG - tig0023420:16081-16100 Msa1408860:intron 45.0%
! CCTTAGGGGAAAGCACAAAT+AGG + tig0023420:16131-16150 None:intergenic 45.0%
CCTATTTGTGCTTTCCCCTA+AGG - tig0023420:16128-16147 Msa1408860:intron 45.0%
GATAAGACCTTGTTGATCGG+AGG + tig0023420:16157-16176 None:intergenic 45.0%
GGCATTCTACTATGAGGGAA+AGG - tig0023420:16497-16516 Msa1408860:CDS 45.0%
GATGGAAGGGAGTGAAATTG+TGG - tig0023420:16993-17012 Msa1408860:intron 45.0%
TTCTACTACGAAGACTGCAC+CGG + tig0023420:17029-17048 None:intergenic 45.0%
GTGCAGTCTTCGTAGTAGAA+AGG - tig0023420:17029-17048 Msa1408860:intron 45.0%
CTAATGCAATCACAGTTGCC+GGG + tig0023420:17348-17367 None:intergenic 45.0%
CCTAATGCAATCACAGTTGC+CGG + tig0023420:17349-17368 None:intergenic 45.0%
TAATGCAGAGGGCAGTTCAA+TGG - tig0023420:17527-17546 Msa1408860:intron 45.0%
CTGCCGTTCCTTTCATTCTA+TGG - tig0023420:18085-18104 Msa1408860:intron 45.0%
AACAAACTTGTGGAGGTGGT+AGG + tig0023420:19046-19065 None:intergenic 45.0%
CTGAAACAAACTTGTGGAGG+TGG + tig0023420:19050-19069 None:intergenic 45.0%
!!! TAAATTTAGAAAATTAATTT+TGG - tig0023420:15663-15682 Msa1408860:three_prime_UTR 5.0%
GGCAATGACTAACGTGTGGA+GGG + tig0023420:15857-15876 None:intergenic 50.0%
AGGCAATGACTAACGTGTGG+AGG + tig0023420:15858-15877 None:intergenic 50.0%
! GGGAAAGCACAAATAGGCCT+CGG + tig0023420:16125-16144 None:intergenic 50.0%
AAGACCTTGTTGATCGGAGG+TGG + tig0023420:16154-16173 None:intergenic 50.0%
TCAACCTTGCCAGCTGAAGA+GGG + tig0023420:16283-16302 None:intergenic 50.0%
AGGGAGTGAAATTGTGGCAG+AGG - tig0023420:16999-17018 Msa1408860:intron 50.0%
GGGAGTGAAATTGTGGCAGA+GGG - tig0023420:17000-17019 Msa1408860:intron 50.0%
TCTACTACGAAGACTGCACC+GGG + tig0023420:17028-17047 None:intergenic 50.0%
CCGGCAACTGTGATTGCATT+AGG - tig0023420:17346-17365 Msa1408860:intron 50.0%
AGCAAGTGTCAAGCCCAAAC+TGG + tig0023420:17822-17841 None:intergenic 50.0%
TAGGGGCCATGTCCTAATTG+TGG - tig0023420:18233-18252 Msa1408860:CDS 50.0%
!! TGCTCACTCTGGAACACCAT+TGG - tig0023420:18875-18894 Msa1408860:five_prime_UTR 50.0%
GTTATCACGTGGGCATAGGG+TGG + tig0023420:15714-15733 None:intergenic 55.0%
GACTAACGTGTGGAGGGACT+TGG + tig0023420:15851-15870 None:intergenic 55.0%
CACAAATAGGCCTCGGCGAA+GGG + tig0023420:16118-16137 None:intergenic 55.0%
! TTGATCGGAGGTGGCCTTAG+GGG + tig0023420:16145-16164 None:intergenic 55.0%
! GTTGATCGGAGGTGGCCTTA+GGG + tig0023420:16146-16165 None:intergenic 55.0%
TGTTGATCGGAGGTGGCCTT+AGG + tig0023420:16147-16166 None:intergenic 55.0%
AAGGCCACCTCCGATCAACA+AGG - tig0023420:16147-16166 Msa1408860:intron 55.0%
TGTTTCCTCCCCTCTTCAGC+TGG - tig0023420:16271-16290 Msa1408860:CDS 55.0%
CAACCTTGCCAGCTGAAGAG+GGG + tig0023420:16282-16301 None:intergenic 55.0%
CTCAACCTTGCCAGCTGAAG+AGG + tig0023420:16284-16303 None:intergenic 55.0%
CTCTTCAGCTGGCAAGGTTG+AGG - tig0023420:16282-16301 Msa1408860:intron 55.0%
TGGTGTGTGTGTGTGCGCAA+CGG - tig0023420:16899-16918 Msa1408860:intron 55.0%
AAATTGTGGCAGAGGGTCCC+CGG - tig0023420:17007-17026 Msa1408860:intron 55.0%
CTACTACGAAGACTGCACCG+GGG + tig0023420:17027-17046 None:intergenic 55.0%
CAGTTGCCGGGACTTTCAGT+AGG + tig0023420:17336-17355 None:intergenic 55.0%
GCAGAGGGCAGTTCAATGGT+TGG - tig0023420:17531-17550 Msa1408860:intron 55.0%
GGTCGATAGTAGGGTGAGTG+AGG - tig0023420:17748-17767 Msa1408860:intron 55.0%
GCACAAATAGGCCTCGGCGA+AGG + tig0023420:16119-16138 None:intergenic 60.0%
GGTGTGTGTGTGTGCGCAAC+GGG - tig0023420:16900-16919 Msa1408860:intron 60.0%
GGCGCTCCTACTGAAAGTCC+CGG - tig0023420:17327-17346 Msa1408860:intron 60.0%
AAGGGATGAGTGGCGGCCAC+CGG + tig0023420:16100-16119 None:intergenic 65.0%
CTCGGCGAAGGGATGAGTGG+CGG + tig0023420:16107-16126 None:intergenic 65.0%
CCTTGCCAGCTGAAGAGGGG+AGG + tig0023420:16279-16298 None:intergenic 65.0%
CCTCCCCTCTTCAGCTGGCA+AGG - tig0023420:16276-16295 Msa1408860:CDS 65.0%
CGCCACTCATCCCTTCGCCG+AGG - tig0023420:16105-16124 Msa1408860:intron 70.0%
GGCCTCGGCGAAGGGATGAG+TGG + tig0023420:16110-16129 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0023420 gene 15599 19156 15599 ID=Msa1408860;Name=Msa1408860
tig0023420 mRNA 15599 19156 15599 ID=Msa1408860-mRNA-1;Parent=Msa1408860;Name=Msa1408860-mRNA-1;_AED=0.16;_eAED=0.16;_QI=404|1|1|1|0.8|0.81|11|424|315
tig0023420 exon 15599 16016 15599 ID=Msa1408860-mRNA-1:exon:25773;Parent=Msa1408860-mRNA-1
tig0023420 exon 16225 16300 16225 ID=Msa1408860-mRNA-1:exon:25772;Parent=Msa1408860-mRNA-1
tig0023420 exon 16422 16519 16422 ID=Msa1408860-mRNA-1:exon:25771;Parent=Msa1408860-mRNA-1
tig0023420 exon 16597 16707 16597 ID=Msa1408860-mRNA-1:exon:25770;Parent=Msa1408860-mRNA-1
tig0023420 exon 16833 16884 16833 ID=Msa1408860-mRNA-1:exon:25769;Parent=Msa1408860-mRNA-1
tig0023420 exon 17384 17460 17384 ID=Msa1408860-mRNA-1:exon:25768;Parent=Msa1408860-mRNA-1
tig0023420 exon 17705 17761 17705 ID=Msa1408860-mRNA-1:exon:25767;Parent=Msa1408860-mRNA-1
tig0023420 exon 17963 18063 17963 ID=Msa1408860-mRNA-1:exon:25766;Parent=Msa1408860-mRNA-1
tig0023420 exon 18161 18257 18161 ID=Msa1408860-mRNA-1:exon:25765;Parent=Msa1408860-mRNA-1
tig0023420 exon 18347 18465 18347 ID=Msa1408860-mRNA-1:exon:25764;Parent=Msa1408860-mRNA-1
tig0023420 exon 18587 19156 18587 ID=Msa1408860-mRNA-1:exon:25763;Parent=Msa1408860-mRNA-1
tig0023420 five_prime_UTR 18753 19156 18753 ID=Msa1408860-mRNA-1:five_prime_utr;Parent=Msa1408860-mRNA-1
tig0023420 CDS 18587 18752 18587 ID=Msa1408860-mRNA-1:cds;Parent=Msa1408860-mRNA-1
tig0023420 CDS 18347 18465 18347 ID=Msa1408860-mRNA-1:cds;Parent=Msa1408860-mRNA-1
tig0023420 CDS 18161 18257 18161 ID=Msa1408860-mRNA-1:cds;Parent=Msa1408860-mRNA-1
tig0023420 CDS 17963 18063 17963 ID=Msa1408860-mRNA-1:cds;Parent=Msa1408860-mRNA-1
tig0023420 CDS 17705 17761 17705 ID=Msa1408860-mRNA-1:cds;Parent=Msa1408860-mRNA-1
tig0023420 CDS 17384 17460 17384 ID=Msa1408860-mRNA-1:cds;Parent=Msa1408860-mRNA-1
tig0023420 CDS 16833 16884 16833 ID=Msa1408860-mRNA-1:cds;Parent=Msa1408860-mRNA-1
tig0023420 CDS 16597 16707 16597 ID=Msa1408860-mRNA-1:cds;Parent=Msa1408860-mRNA-1
tig0023420 CDS 16422 16519 16422 ID=Msa1408860-mRNA-1:cds;Parent=Msa1408860-mRNA-1
tig0023420 CDS 16231 16300 16231 ID=Msa1408860-mRNA-1:cds;Parent=Msa1408860-mRNA-1
tig0023420 three_prime_UTR 16225 16230 16225 ID=Msa1408860-mRNA-1:three_prime_utr;Parent=Msa1408860-mRNA-1
tig0023420 three_prime_UTR 15599 16016 15599 ID=Msa1408860-mRNA-1:three_prime_utr;Parent=Msa1408860-mRNA-1
Gene Sequence

>Msa1408860

ATGGCTAGTAAATTATTAGCATTCACATTGACATGCCCTTCAAGACCAACATTCTCCACTTCTGCTACTAGAGTCCTTCCAATTCAATTCAATGCCGGTGGCCGCCACTCATCCCTTCGCCGAGGCCTATTTGTGCTTTCCCCTAAGGCCACCTCCGATCAACAAGCTGGCAAGGTTGAGGAAGATGCTGTTGTTGATAGTAAAATCTTACCATATTGCAGCATAGACAAAAAAGAGAAGAAGTCACTTGGTGAACTTGAGCAAGATTTTCTTCAAGCACTTCAAGCATTCTACTATGAGGGAAAGGCAACTATGTCAAATGAGGAATTTGATAATCTCAAAGAAGAACTCATGTGGGAAGGAAGCAGCGTTGTAATGCTAAGTTCTTCTGAGCAAAAATTTCTGGAAGCATCTATTGCTTATGTGTCTGGAAAACCAATCATGAGTGATAAAGAGTTTGATGAATTAAAACTGAAGCTAAAGATGGAAGGGAGTGAAATTGTGGCAGAGGGTCCCCGGTGCAGTCTTCGTAGTAGAAAGGTTTACAGTGATCTAACTGTTGACTATTTAAAGGCGCTCCTACTGAAAGTCCCGGCAACTGTGATTGCATTAGGATTGTTCTTCTTCCTTGATGATGTGACTGGATTTGAGATCAACTATCTGATAGCGATTCCAGAACCATTCAGTTTCATTTTGACTTGGTTTGCTGCCGTTCCTTTCATTCTATGGTTTGCTCAGTCAATTACAAATGCAATTATAAAAGATTTCTTGATTTTGAAGGGGCCATGTCCTAATTGTGGTACTGAAAACACCTCCTTCTTTGGGACTATATTGTCAATTTCAAGTGGAAATTCCACCAACAAAGTCAAATGTGAGAACTGTGGAACTGTGATGCTATATGATTCAACTACAAGATTGATTACATTGCCAGAAGGAAGTACTGCATAA

Protein sequence

>Msa1408860

MASKLLAFTLTCPSRPTFSTSATRVLPIQFNAGGRHSSLRRGLFVLSPKATSDQQAGKVEEDAVVDSKILPYCSIDKKEKKSLGELEQDFLQALQAFYYEGKATMSNEEFDNLKEELMWEGSSVVMLSSSEQKFLEASIAYVSGKPIMSDKEFDELKLKLKMEGSEIVAEGPRCSLRSRKVYSDLTVDYLKALLLKVPATVIALGLFFFLDDVTGFEINYLIAIPEPFSFILTWFAAVPFILWFAQSITNAIIKDFLILKGPCPNCGTENTSFFGTILSISSGNSTNKVKCENCGTVMLYDSTTRLITLPEGSTA*