AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0833030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0833030 MtrunA17_Chr5g0398281 96.825 315 10 0 1 315 1 315 0.0 625
Msa0833030 MtrunA17_Chr4g0057081 71.746 315 78 4 6 311 57 369 1.75e-157 444
Msa0833030 MtrunA17_Chr2g0328301 28.421 190 102 5 131 294 67 248 1.23e-13 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0833030 AT4G22890.1 74.823 282 69 2 34 315 45 324 4.55e-157 442
Msa0833030 AT4G22890.3 74.823 282 69 2 34 315 45 324 4.55e-157 442
Msa0833030 AT4G22890.5 74.113 282 69 1 34 315 45 322 5.82e-157 442
Msa0833030 AT4G22890.4 74.113 282 68 1 34 315 45 321 6.92e-157 441
Msa0833030 AT4G11960.1 69.304 316 88 5 6 315 1 313 1.57e-151 427
Msa0833030 AT4G11960.2 76.494 251 59 0 65 315 46 296 1.36e-145 412
Msa0833030 AT4G22890.2 74.806 258 63 2 34 291 45 300 2.43e-142 404
Msa0833030 AT5G59400.1 30.481 187 104 4 131 294 75 258 2.79e-14 72.4
Msa0833030 AT5G59400.2 30.539 167 93 3 131 274 75 241 1.74e-11 63.9

Find 119 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAATTTAGAAAATTAATTT+TGG 0.192244 5_4:-6227426 Msa0833030:five_prime_UTR
ACTGAAAACACCTCCTTCTT+TGG 0.198021 5_4:-6224837 Msa0833030:CDS
CTGCCGTTCCTTTCATTCTA+TGG 0.206904 5_4:-6225009 Msa0833030:CDS
TCTAACTGTTGACTATTTAA+AGG 0.225624 5_4:-6225788 Msa0833030:CDS
TATGTCATTCATTAGTTATT+AGG 0.244471 5_4:-6224019 Msa0833030:three_prime_UTR
ACTTCATTGCCTTTAACTAA+TGG 0.264836 5_4:+6224247 None:intergenic
CTTCTCACATTTGACTTTGT+TGG 0.266908 5_4:+6224782 None:intergenic
TGTTGATCGGAGGTGGCCTT+AGG 0.316920 5_4:+6226950 None:intergenic
CCACCGGCATTGAATTGAAT+TGG 0.333464 5_4:+6227013 None:intergenic
CCGGCAACTGTGATTGCATT+AGG 0.339486 5_4:-6225748 Msa0833030:CDS
CATTGAAGGTGAATATTGTT+TGG 0.343763 5_4:+6227195 None:intergenic
ATTAATAAAGAATATTGTAT+TGG 0.352979 5_4:+6227131 None:intergenic
TGATCCTTTCATATATATCT+TGG 0.353922 5_4:-6227461 Msa0833030:five_prime_UTR
CCTCCCCTCTTCAGCTGGCA+AGG 0.379946 5_4:-6226818 Msa0833030:intron
CCTAATGCAATCACAGTTGC+CGG 0.384531 5_4:+6225748 None:intergenic
GTGGAGAATGTTGGTCTTGA+AGG 0.390699 5_4:+6227055 None:intergenic
AGCTAGTTCTTCTAATTATG+AGG 0.392610 5_4:+6227163 None:intergenic
CCTATTTGTGCTTTCCCCTA+AGG 0.397809 5_4:-6226966 Msa0833030:CDS
TTCTTCCTTGATGATGTGAC+TGG 0.398806 5_4:-6225219 Msa0833030:CDS
CTGAAAACACCTCCTTCTTT+GGG 0.404488 5_4:-6224836 Msa0833030:CDS
AATGTCAACCATTGGAGTTA+AGG 0.405085 5_4:+6224113 None:intergenic
AAGTAGTACATTAATTATAT+AGG 0.405494 5_4:-6227402 Msa0833030:five_prime_UTR
GCATCTATTGCTTATGTGTC+TGG 0.406902 5_4:-6226376 Msa0833030:CDS
AAAATGAAACTGAATGGTTC+TGG 0.407016 5_4:+6225043 None:intergenic
AACTCTTTATCACTCATGAT+TGG 0.413038 5_4:+6226349 None:intergenic
ATTAATCATCATCATCATAA+TGG 0.414062 5_4:-6227110 Msa0833030:exon
CCTTAGGGGAAAGCACAAAT+AGG 0.420342 5_4:+6226966 None:intergenic
ACTTATGCAGTACTTCCTTC+TGG 0.426241 5_4:+6224590 None:intergenic
TGAAACAAGAGGAGAAGAAA+GGG 0.435558 5_4:-6227277 Msa0833030:five_prime_UTR
GTTGATCGGAGGTGGCCTTA+GGG 0.446924 5_4:+6226951 None:intergenic
CTCACATTTGACTTTGTTGG+TGG 0.447601 5_4:+6224785 None:intergenic
TGAATTAAAACTGAAGCTAA+AGG 0.449191 5_4:-6226323 Msa0833030:intron
GTGAAACAAGAGGAGAAGAA+AGG 0.458754 5_4:-6227278 Msa0833030:five_prime_UTR
AATAAAGAATATTGTATTGG+TGG 0.461111 5_4:+6227134 None:intergenic
CTCTTCAGCTGGCAAGGTTG+AGG 0.463924 5_4:-6226812 Msa0833030:intron
TTAAGTTATCACGTGGGCAT+AGG 0.471446 5_4:+6227374 None:intergenic
TGAATAGGCATTCTACTATG+AGG 0.480147 5_4:-6226603 Msa0833030:intron
GACTAACGTGTGGAGGGACT+TGG 0.485270 5_4:+6227241 None:intergenic
TGCTCACTCTGGAACACCAT+TGG 0.491651 5_4:-6224219 Msa0833030:three_prime_UTR
GCACAAATAGGCCTCGGCGA+AGG 0.498171 5_4:+6226978 None:intergenic
GAAGGTGAATATTGTTTGGA+GGG 0.500548 5_4:+6227199 None:intergenic
CACAAATAGGCCTCGGCGAA+GGG 0.502204 5_4:+6226979 None:intergenic
TTGACATTAATTAACATACT+TGG 0.502422 5_4:-6224098 Msa0833030:three_prime_UTR
GAATATTGTATTGGTGGTGA+TGG 0.502433 5_4:+6227140 None:intergenic
CATTAATTAACATACTTGGT+AGG 0.506378 5_4:-6224094 Msa0833030:three_prime_UTR
AAGGGATGAGTGGCGGCCAC+CGG 0.508999 5_4:+6226997 None:intergenic
TTCTACTACGAAGACTGCAC+CGG 0.512099 5_4:+6226068 None:intergenic
AGAAGGGATTAGTTCTCCAT+TGG 0.513240 5_4:-6224338 Msa0833030:three_prime_UTR
TAAGTTATCACGTGGGCATA+GGG 0.513593 5_4:+6227375 None:intergenic
AAATTGTGGCAGAGGGTCCC+CGG 0.518295 5_4:-6226087 Msa0833030:CDS
AACATCAACATCAAAATCCT+AGG 0.518444 5_4:+6227322 None:intergenic
CATATCATTATTCATGAGAA+GGG 0.525309 5_4:-6224354 Msa0833030:three_prime_UTR
TGAGGGTATTCATTCATTGA+AGG 0.525774 5_4:+6227181 None:intergenic
ATGAGGATCCTTAACTCCAA+TGG 0.529643 5_4:-6224121 Msa0833030:three_prime_UTR
TGAAGGTGAATATTGTTTGG+AGG 0.533225 5_4:+6227198 None:intergenic
GGGAAAGCACAAATAGGCCT+CGG 0.534635 5_4:+6226972 None:intergenic
CAAGTCAAAATGAAACTGAA+TGG 0.534907 5_4:+6225037 None:intergenic
TTTGGAGGGAAACAAAGATA+AGG 0.535545 5_4:+6227213 None:intergenic
AAGGACTCTAGAAGCAGAAG+TGG 0.537690 5_4:+6227036 None:intergenic
AAGACCTTGTTGATCGGAGG+TGG 0.538161 5_4:+6226943 None:intergenic
CAAAGAAAGTATTACTACCT+AGG 0.538190 5_4:-6227339 Msa0833030:five_prime_UTR
CTGAAACAAACTTGTGGAGG+TGG 0.540197 5_4:+6224047 None:intergenic
TGTTAATTAATGTCAACCAT+TGG 0.541275 5_4:+6224105 None:intergenic
AGGGAGTGAAATTGTGGCAG+AGG 0.544360 5_4:-6226095 Msa0833030:CDS
CGGCATTGAATTGAATTGGA+AGG 0.544410 5_4:+6227017 None:intergenic
GCATATCATTATTCATGAGA+AGG 0.544610 5_4:-6224355 Msa0833030:three_prime_UTR
GTAAATAGTTTCTCTACCAA+TGG 0.546890 5_4:+6224322 None:intergenic
GAATAGGCATTCTACTATGA+GGG 0.550131 5_4:-6226602 Msa0833030:intron
GGCATTCTACTATGAGGGAA+AGG 0.551864 5_4:-6226597 Msa0833030:CDS
TGACAATATAGTCCCAAAGA+AGG 0.552001 5_4:+6224824 None:intergenic
ACTATATTGTCAATTTCAAG+TGG 0.556328 5_4:-6224813 Msa0833030:CDS
CTTCCAATTCAATTCAATGC+CGG 0.558134 5_4:-6227016 Msa0833030:CDS
TGAGCAAACCATAGAATGAA+AGG 0.563526 5_4:+6225001 None:intergenic
TTGATCGGAGGTGGCCTTAG+GGG 0.563797 5_4:+6226952 None:intergenic
TGGAGAATGTTGGTCTTGAA+GGG 0.565725 5_4:+6227056 None:intergenic
ATCAAATCAAGAAATTGTCA+AGG 0.566139 5_4:-6224274 Msa0833030:three_prime_UTR
GCTAGTTCTTCTAATTATGA+GGG 0.566882 5_4:+6227164 None:intergenic
GGCGCTCCTACTGAAAGTCC+CGG 0.568811 5_4:-6225767 Msa0833030:CDS
TGAAGTCATTATGCTCACTC+TGG 0.570854 5_4:-6224230 Msa0833030:three_prime_UTR
GTGCAGTCTTCGTAGTAGAA+AGG 0.571660 5_4:-6226065 Msa0833030:intron
ATCTCAAAGAAGAACTCATG+TGG 0.574149 5_4:-6226547 Msa0833030:CDS
CAAATCCAGTCACATCATCA+AGG 0.579365 5_4:+6225214 None:intergenic
GCAAATGACTAACGTGTGGA+GGG 0.583392 5_4:+6227235 None:intergenic
AAAGGCAACTATGTCAAATG+AGG 0.583401 5_4:-6226579 Msa0833030:CDS
TAAGATAAGACCTTGTTGAT+CGG 0.583501 5_4:+6226937 None:intergenic
TCTACTACGAAGACTGCACC+GGG 0.585139 5_4:+6226069 None:intergenic
CAGTTGCCGGGACTTTCAGT+AGG 0.588097 5_4:+6225761 None:intergenic
CCAATTCAATTCAATGCCGG+TGG 0.588629 5_4:-6227013 Msa0833030:CDS
GGCAAATGACTAACGTGTGG+AGG 0.591739 5_4:+6227234 None:intergenic
GATGGAAGGGAGTGAAATTG+TGG 0.591843 5_4:-6226101 Msa0833030:CDS
AAAGAAGAACTCATGTGGGA+AGG 0.595561 5_4:-6226542 Msa0833030:CDS
AGGAAGTACTGCATAAGTGA+AGG 0.596142 5_4:-6224585 Msa0833030:intron
CTAATGCAATCACAGTTGCC+GGG 0.598117 5_4:+6225749 None:intergenic
AGAAACTATTTACATGTGGA+AGG 0.598825 5_4:-6224312 Msa0833030:three_prime_UTR
GAAGCAGAAGTGGAGAATGT+TGG 0.602926 5_4:+6227046 None:intergenic
CTTACCAAGATATATATGAA+AGG 0.608661 5_4:+6227457 None:intergenic
TAGGGGCCATGTCCTAATTG+TGG 0.612557 5_4:-6224861 Msa0833030:CDS
AGCTAGCTGAAACAAACTTG+TGG 0.618916 5_4:+6224041 None:intergenic
GGCCTCGGCGAAGGGATGAG+TGG 0.619355 5_4:+6226987 None:intergenic
GGGAGTGAAATTGTGGCAGA+GGG 0.625703 5_4:-6226094 Msa0833030:CDS
AACAAACTTGTGGAGGTGGT+AGG 0.630843 5_4:+6224051 None:intergenic
GTAGAGAAACTATTTACATG+TGG 0.633798 5_4:-6224316 Msa0833030:three_prime_UTR
GTTATCACGTGGGCATAGGG+TGG 0.634616 5_4:+6227378 None:intergenic
TAGCTGAAACAAACTTGTGG+AGG 0.634851 5_4:+6224044 None:intergenic
TCAGTACCACAATTAGGACA+TGG 0.636619 5_4:+6224855 None:intergenic
CAATATAGTCCCAAAGAAGG+AGG 0.636916 5_4:+6224827 None:intergenic
TCTCAAAGAAGAACTCATGT+GGG 0.638689 5_4:-6226546 Msa0833030:CDS
AGATTGATTACATTGCCAGA+AGG 0.638843 5_4:-6224605 Msa0833030:CDS
CTCGGCGAAGGGATGAGTGG+CGG 0.641648 5_4:+6226990 None:intergenic
GTATACACATATCAAGCCAA+TGG 0.641751 5_4:+6224203 None:intergenic
ATAACACACTCTCTCTAACA+TGG 0.645208 5_4:+6227483 None:intergenic
GATAAGACCTTGTTGATCGG+AGG 0.647194 5_4:+6226940 None:intergenic
ACGTGATAACTTAAAACATG+AGG 0.649341 5_4:-6227365 Msa0833030:five_prime_UTR
TAAGGCAAATGACTAACGTG+TGG 0.656815 5_4:+6227231 None:intergenic
AAACCATAGAATGAAAGGAA+CGG 0.657593 5_4:+6225006 None:intergenic
CGCCACTCATCCCTTCGCCG+AGG 0.657673 5_4:-6226989 Msa0833030:CDS
AAGGCCACCTCCGATCAACA+AGG 0.675926 5_4:-6226947 Msa0833030:intron
TGAGATCAACTATCTGATAG+CGG 0.690835 5_4:-6225193 Msa0833030:intron
CTACTACGAAGACTGCACCG+GGG 0.817900 5_4:+6226070 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATAAAGAATATTGTAT+TGG + chr5_4:6224322-6224341 None:intergenic 10.0%
!!! CTTTATATAATTTTGAAATA+TGG - chr5_4:6225235-6225254 Msa0833030:intron 10.0%
!!! AGATAGTTATTTTTAATTAT+AGG - chr5_4:6226570-6226589 Msa0833030:CDS 10.0%
!!! GATAGTTATTTTTAATTATA+GGG - chr5_4:6226571-6226590 Msa0833030:CDS 10.0%
!!! ATAGTTATTTTTAATTATAG+GGG - chr5_4:6226572-6226591 Msa0833030:CDS 10.0%
!! AATCAAATTAATATGATATA+TGG - chr5_4:6226752-6226771 Msa0833030:CDS 10.0%
!! AAGTAGTACATTAATTATAT+AGG - chr5_4:6224048-6224067 Msa0833030:three_prime_UTR 15.0%
!! TTCTGTTTATTATATTGAAT+AGG - chr5_4:6224832-6224851 Msa0833030:CDS 15.0%
!! CATAAAAGACATTAAATAAA+AGG - chr5_4:6225456-6225475 Msa0833030:intron 15.0%
!!! GTTTCTATTTTTACTTTAAT+CGG + chr5_4:6226025-6226044 None:intergenic 15.0%
!!! AATATATTTTACAGTATTCA+AGG + chr5_4:6226901-6226920 None:intergenic 15.0%
!! AATAAAGAATATTGTATTGG+TGG + chr5_4:6224319-6224338 None:intergenic 20.0%
!! ATTAATCATCATCATCATAA+TGG - chr5_4:6224340-6224359 Msa0833030:three_prime_UTR 20.0%
!! TTATGACATTAACAATCTTT+AGG - chr5_4:6224538-6224557 Msa0833030:intron 20.0%
!! ATACTATTTGTTTCATTCAT+TGG - chr5_4:6224592-6224611 Msa0833030:CDS 20.0%
!! AATACATGAGTTTACAATAT+TGG - chr5_4:6225013-6225032 Msa0833030:CDS 20.0%
!!! ACTAATTAATACCCTTTTAT+AGG - chr5_4:6225629-6225648 Msa0833030:intron 20.0%
!!! AAAAGATTTCTTGATTTTGA+AGG - chr5_4:6226493-6226512 Msa0833030:intron 20.0%
!!! TTTTTGTAATTTATCTCTGT+TGG - chr5_4:6226521-6226540 Msa0833030:intron 20.0%
!! ATGACTTAATAATGTACAAA+AGG + chr5_4:6226705-6226724 None:intergenic 20.0%
!! TTTATATCTCTAATACATAC+AGG - chr5_4:6227073-6227092 Msa0833030:CDS 20.0%
!!! TTTTGTTTTTTTGAGTTATG+AGG - chr5_4:6227312-6227331 Msa0833030:five_prime_UTR 20.0%
!! TTGACATTAATTAACATACT+TGG - chr5_4:6227352-6227371 Msa0833030:five_prime_UTR 20.0%
!! TATGTCATTCATTAGTTATT+AGG - chr5_4:6227431-6227450 Msa0833030:five_prime_UTR 20.0%
! TGATCCTTTCATATATATCT+TGG - chr5_4:6223989-6224008 Msa0833030:three_prime_UTR 25.0%
! CTTACCAAGATATATATGAA+AGG + chr5_4:6223996-6224015 None:intergenic 25.0%
! TTTGTTGAAAACTTAGTATC+CGG + chr5_4:6224564-6224583 None:intergenic 25.0%
! ATAACATTCACTGAAGTTAT+TGG + chr5_4:6224961-6224980 None:intergenic 25.0%
! TGAATTAAAACTGAAGCTAA+AGG - chr5_4:6225127-6225146 Msa0833030:intron 25.0%
!! GGTTTGATATTTTCATTTCA+TGG - chr5_4:6225148-6225167 Msa0833030:intron 25.0%
! ATATCTAATAAGAGCTTCAT+CGG - chr5_4:6225186-6225205 Msa0833030:intron 25.0%
! AATCCATATTGAATCACAAT+TGG + chr5_4:6225308-6225327 None:intergenic 25.0%
!! TTTCTCTTTTCTTTTACAGA+TGG - chr5_4:6225331-6225350 Msa0833030:intron 25.0%
! CTGAATTTCAGTATAAATAC+AGG + chr5_4:6225520-6225539 None:intergenic 25.0%
! TTATACTGAAATTCAGCTTA+AGG - chr5_4:6225524-6225543 Msa0833030:intron 25.0%
! AACATACATGAATCATTTCA+AGG + chr5_4:6225553-6225572 None:intergenic 25.0%
! ATCACTGTAAACCTATAAAA+GGG + chr5_4:6225643-6225662 None:intergenic 25.0%
!! TCTAACTGTTGACTATTTAA+AGG - chr5_4:6225662-6225681 Msa0833030:intron 25.0%
!! TTTTCAAAGAAATCAATGTC+TGG + chr5_4:6225806-6225825 None:intergenic 25.0%
!! GAGAACTATAAAGTCTTATA+TGG - chr5_4:6225840-6225859 Msa0833030:intron 25.0%
! AGTGTACTAGATTTATAACA+AGG + chr5_4:6225939-6225958 None:intergenic 25.0%
! ATTATCTGCTCTATAATATC+AGG - chr5_4:6226205-6226224 Msa0833030:intron 25.0%
! ATTCATCTAATGATTGCTAA+AGG - chr5_4:6226359-6226378 Msa0833030:CDS 25.0%
! AACTATCTTAGCATATGTAA+TGG + chr5_4:6226558-6226577 None:intergenic 25.0%
! ACTATATTGTCAATTTCAAG+TGG - chr5_4:6226637-6226656 Msa0833030:intron 25.0%
!! TATGTTGTAGCATAAACTTT+TGG - chr5_4:6226928-6226947 Msa0833030:intron 25.0%
!! TAGAAATTGGTTTACCTTAT+TGG + chr5_4:6227025-6227044 None:intergenic 25.0%
! TAGTTACACTAGTTAGAAAT+TGG + chr5_4:6227038-6227057 None:intergenic 25.0%
! CATATCATTATTCATGAGAA+GGG - chr5_4:6227096-6227115 Msa0833030:exon 25.0%
! ATCAAATCAAGAAATTGTCA+AGG - chr5_4:6227176-6227195 Msa0833030:five_prime_UTR 25.0%
! TGTTAATTAATGTCAACCAT+TGG + chr5_4:6227348-6227367 None:intergenic 25.0%
! CATTAATTAACATACTTGGT+AGG - chr5_4:6227356-6227375 Msa0833030:five_prime_UTR 25.0%
!!! CATGTTTTAAGTTATCACGT+GGG + chr5_4:6224085-6224104 None:intergenic 30.0%
!!! TCATGTTTTAAGTTATCACG+TGG + chr5_4:6224086-6224105 None:intergenic 30.0%
ACGTGATAACTTAAAACATG+AGG - chr5_4:6224085-6224104 Msa0833030:three_prime_UTR 30.0%
!! CAAAGAAAGTATTACTACCT+AGG - chr5_4:6224111-6224130 Msa0833030:three_prime_UTR 30.0%
AACATCAACATCAAAATCCT+AGG + chr5_4:6224131-6224150 None:intergenic 30.0%
GAAAAAGATAGTGAAACAAG+AGG - chr5_4:6224162-6224181 Msa0833030:three_prime_UTR 30.0%
CATTGAAGGTGAATATTGTT+TGG + chr5_4:6224258-6224277 None:intergenic 30.0%
! GCTAGTTCTTCTAATTATGA+GGG + chr5_4:6224289-6224308 None:intergenic 30.0%
! AGCTAGTTCTTCTAATTATG+AGG + chr5_4:6224290-6224309 None:intergenic 30.0%
TAAGATAAGACCTTGTTGAT+CGG + chr5_4:6224516-6224535 None:intergenic 30.0%
! TTTTTGTCTATGCTGCAATA+TGG + chr5_4:6224693-6224712 None:intergenic 30.0%
AAAAAAGAGAAGAAGTCACT+TGG - chr5_4:6224708-6224727 Msa0833030:intron 30.0%
! ACAGAACATATGATAATGAG+AGG + chr5_4:6224784-6224803 None:intergenic 30.0%
! ACAATATTGGTTATTTGTGC+AGG - chr5_4:6225026-6225045 Msa0833030:CDS 30.0%
TTCTTCTGAGCAAAAATTTC+TGG - chr5_4:6225049-6225068 Msa0833030:CDS 30.0%
AACTCTTTATCACTCATGAT+TGG + chr5_4:6225104-6225123 None:intergenic 30.0%
GTACCAATTGTGATTCAATA+TGG - chr5_4:6225302-6225321 Msa0833030:intron 30.0%
! TCTTTTCTTTTACAGATGGA+AGG - chr5_4:6225335-6225354 Msa0833030:intron 30.0%
! CTTTTCTTTTACAGATGGAA+GGG - chr5_4:6225336-6225355 Msa0833030:intron 30.0%
ATGCAAATGCTCATAAACAA+TGG + chr5_4:6225436-6225455 None:intergenic 30.0%
GATCACTGTAAACCTATAAA+AGG + chr5_4:6225644-6225663 None:intergenic 30.0%
AGTTCATGTTGCATTTGATT+TGG - chr5_4:6225765-6225784 Msa0833030:CDS 30.0%
TAGAACAACAAATAATGCAG+AGG - chr5_4:6225871-6225890 Msa0833030:intron 30.0%
AGAACAACAAATAATGCAGA+GGG - chr5_4:6225872-6225891 Msa0833030:intron 30.0%
! GTATGTGTTGTTAAGCTATT+GGG + chr5_4:6226003-6226022 None:intergenic 30.0%
!!! CTCAAGTCTTTTTTCAAAAC+TGG + chr5_4:6226070-6226089 None:intergenic 30.0%
TTGAAAAAAGACTTGAGACA+AGG - chr5_4:6226073-6226092 Msa0833030:CDS 30.0%
TCTAAATAAGCAATTAGCGA+TGG + chr5_4:6226306-6226325 None:intergenic 30.0%
AAAATGAAACTGAATGGTTC+TGG + chr5_4:6226410-6226429 None:intergenic 30.0%
CAAGTCAAAATGAAACTGAA+TGG + chr5_4:6226416-6226435 None:intergenic 30.0%
!!! CATTCAGTTTCATTTTGACT+TGG - chr5_4:6226414-6226433 Msa0833030:intron 30.0%
AAACCATAGAATGAAAGGAA+CGG + chr5_4:6226447-6226466 None:intergenic 30.0%
!!! TGTGAACTTTTTCATAGACA+AGG - chr5_4:6226953-6226972 Msa0833030:CDS 30.0%
AACACAGTGTATAACCAATA+AGG - chr5_4:6227008-6227027 Msa0833030:CDS 30.0%
GCATATCATTATTCATGAGA+AGG - chr5_4:6227095-6227114 Msa0833030:exon 30.0%
GTAAATAGTTTCTCTACCAA+TGG + chr5_4:6227131-6227150 None:intergenic 30.0%
GTAGAGAAACTATTTACATG+TGG - chr5_4:6227134-6227153 Msa0833030:five_prime_UTR 30.0%
AGAAACTATTTACATGTGGA+AGG - chr5_4:6227138-6227157 Msa0833030:five_prime_UTR 30.0%
! CAAGGTTTTCCATTAGTTAA+AGG - chr5_4:6227194-6227213 Msa0833030:five_prime_UTR 30.0%
ACTTCATTGCCTTTAACTAA+TGG + chr5_4:6227206-6227225 None:intergenic 30.0%
ATAACACACTCTCTCTAACA+TGG + chr5_4:6223970-6223989 None:intergenic 35.0%
TGAAACAAGAGGAGAAGAAA+GGG - chr5_4:6224173-6224192 Msa0833030:three_prime_UTR 35.0%
TTTGGAGGGAAACAAAGATA+AGG + chr5_4:6224240-6224259 None:intergenic 35.0%
GAAGGTGAATATTGTTTGGA+GGG + chr5_4:6224254-6224273 None:intergenic 35.0%
TGAAGGTGAATATTGTTTGG+AGG + chr5_4:6224255-6224274 None:intergenic 35.0%
!! TGAGGGTATTCATTCATTGA+AGG + chr5_4:6224272-6224291 None:intergenic 35.0%
!! GAATATTGTATTGGTGGTGA+TGG + chr5_4:6224313-6224332 None:intergenic 35.0%
CTTCCAATTCAATTCAATGC+CGG - chr5_4:6224434-6224453 Msa0833030:intron 35.0%
GACATTAACAATCTTTAGGC+CGG - chr5_4:6224542-6224561 Msa0833030:intron 35.0%
TGAATAGGCATTCTACTATG+AGG - chr5_4:6224847-6224866 Msa0833030:CDS 35.0%
GAATAGGCATTCTACTATGA+GGG - chr5_4:6224848-6224867 Msa0833030:CDS 35.0%
AAAGGCAACTATGTCAAATG+AGG - chr5_4:6224871-6224890 Msa0833030:intron 35.0%
ATCTCAAAGAAGAACTCATG+TGG - chr5_4:6224903-6224922 Msa0833030:intron 35.0%
TCTCAAAGAAGAACTCATGT+GGG - chr5_4:6224904-6224923 Msa0833030:intron 35.0%
!! AAGGTATCAAGTTGAATCTG+TGG - chr5_4:6225404-6225423 Msa0833030:intron 35.0%
TCAGTATAAATACAGGACAG+AGG + chr5_4:6225513-6225532 None:intergenic 35.0%
TCATGCACTCGATTAAAAGA+AGG + chr5_4:6225743-6225762 None:intergenic 35.0%
GTTCAATGGTTGGAACAAAT+TGG - chr5_4:6225897-6225916 Msa0833030:intron 35.0%
! GGTATGTGTTGTTAAGCTAT+TGG + chr5_4:6226004-6226023 None:intergenic 35.0%
ACTTGAGACAAGGTTTATCA+AGG - chr5_4:6226083-6226102 Msa0833030:CDS 35.0%
TTAGATGAAACAGACCAGTT+TGG - chr5_4:6226161-6226180 Msa0833030:intron 35.0%
TAGATGAAACAGACCAGTTT+GGG - chr5_4:6226162-6226181 Msa0833030:intron 35.0%
TGAGATCAACTATCTGATAG+CGG - chr5_4:6226257-6226276 Msa0833030:intron 35.0%
TGAGCAAACCATAGAATGAA+AGG + chr5_4:6226452-6226471 None:intergenic 35.0%
! GTGTTTTCAGTACCACAATT+AGG + chr5_4:6226604-6226623 None:intergenic 35.0%
TGACAATATAGTCCCAAAGA+AGG + chr5_4:6226629-6226648 None:intergenic 35.0%
! CTTCTCACATTTGACTTTGT+TGG + chr5_4:6226671-6226690 None:intergenic 35.0%
AGATTGATTACATTGCCAGA+AGG - chr5_4:6226845-6226864 Msa0833030:intron 35.0%
GTATACACATATCAAGCCAA+TGG + chr5_4:6227250-6227269 None:intergenic 35.0%
AATGTCAACCATTGGAGTTA+AGG + chr5_4:6227340-6227359 None:intergenic 35.0%
TAAGTTATCACGTGGGCATA+GGG + chr5_4:6224078-6224097 None:intergenic 40.0%
TTAAGTTATCACGTGGGCAT+AGG + chr5_4:6224079-6224098 None:intergenic 40.0%
GTGAAACAAGAGGAGAAGAA+AGG - chr5_4:6224172-6224191 Msa0833030:three_prime_UTR 40.0%
TAAGGCAAATGACTAACGTG+TGG + chr5_4:6224222-6224241 None:intergenic 40.0%
!! TGGAGAATGTTGGTCTTGAA+GGG + chr5_4:6224397-6224416 None:intergenic 40.0%
! CGGCATTGAATTGAATTGGA+AGG + chr5_4:6224436-6224455 None:intergenic 40.0%
AAAGAAGAACTCATGTGGGA+AGG - chr5_4:6224908-6224927 Msa0833030:intron 40.0%
GCATCTATTGCTTATGTGTC+TGG - chr5_4:6225074-6225093 Msa0833030:intron 40.0%
CAATGGTTGGAACAAATTGG+AGG - chr5_4:6225900-6225919 Msa0833030:intron 40.0%
! CTAGTACACTCGCTTCATTT+TGG - chr5_4:6225949-6225968 Msa0833030:intron 40.0%
GGTTTATCAAGGTCGATAGT+AGG - chr5_4:6226094-6226113 Msa0833030:CDS 40.0%
!! TTCTTCCTTGATGATGTGAC+TGG - chr5_4:6226231-6226250 Msa0833030:intron 40.0%
CAAATCCAGTCACATCATCA+AGG + chr5_4:6226239-6226258 None:intergenic 40.0%
CAATTAGCGATGGTAGAACA+AGG + chr5_4:6226296-6226315 None:intergenic 40.0%
TCAGTACCACAATTAGGACA+TGG + chr5_4:6226598-6226617 None:intergenic 40.0%
ACTGAAAACACCTCCTTCTT+TGG - chr5_4:6226613-6226632 Msa0833030:intron 40.0%
CTGAAAACACCTCCTTCTTT+GGG - chr5_4:6226614-6226633 Msa0833030:intron 40.0%
CAATATAGTCCCAAAGAAGG+AGG + chr5_4:6226626-6226645 None:intergenic 40.0%
! CTCACATTTGACTTTGTTGG+TGG + chr5_4:6226668-6226687 None:intergenic 40.0%
CCACAGCTGAAGCATAAATT+TGG + chr5_4:6226797-6226816 None:intergenic 40.0%
CCAAATTTATGCTTCAGCTG+TGG - chr5_4:6226794-6226813 Msa0833030:CDS 40.0%
ACTTATGCAGTACTTCCTTC+TGG + chr5_4:6226863-6226882 None:intergenic 40.0%
!! AGGAAGTACTGCATAAGTGA+AGG - chr5_4:6226865-6226884 Msa0833030:intron 40.0%
!! AGAAGGGATTAGTTCTCCAT+TGG - chr5_4:6227112-6227131 Msa0833030:exon 40.0%
TGAAGTCATTATGCTCACTC+TGG - chr5_4:6227220-6227239 Msa0833030:five_prime_UTR 40.0%
ATGAGGATCCTTAACTCCAA+TGG - chr5_4:6227329-6227348 Msa0833030:five_prime_UTR 40.0%
TAGCTGAAACAAACTTGTGG+AGG + chr5_4:6227409-6227428 None:intergenic 40.0%
AGCTAGCTGAAACAAACTTG+TGG + chr5_4:6227412-6227431 None:intergenic 40.0%
GCAAATGACTAACGTGTGGA+GGG + chr5_4:6224218-6224237 None:intergenic 45.0%
!! GTGGAGAATGTTGGTCTTGA+AGG + chr5_4:6224398-6224417 None:intergenic 45.0%
GAAGCAGAAGTGGAGAATGT+TGG + chr5_4:6224407-6224426 None:intergenic 45.0%
! AAGGACTCTAGAAGCAGAAG+TGG + chr5_4:6224417-6224436 None:intergenic 45.0%
! CCACCGGCATTGAATTGAAT+TGG + chr5_4:6224440-6224459 None:intergenic 45.0%
CCAATTCAATTCAATGCCGG+TGG - chr5_4:6224437-6224456 Msa0833030:intron 45.0%
! CCTTAGGGGAAAGCACAAAT+AGG + chr5_4:6224487-6224506 None:intergenic 45.0%
CCTATTTGTGCTTTCCCCTA+AGG - chr5_4:6224484-6224503 Msa0833030:intron 45.0%
GATAAGACCTTGTTGATCGG+AGG + chr5_4:6224513-6224532 None:intergenic 45.0%
GGCATTCTACTATGAGGGAA+AGG - chr5_4:6224853-6224872 Msa0833030:CDS 45.0%
GATGGAAGGGAGTGAAATTG+TGG - chr5_4:6225349-6225368 Msa0833030:intron 45.0%
TTCTACTACGAAGACTGCAC+CGG + chr5_4:6225385-6225404 None:intergenic 45.0%
GTGCAGTCTTCGTAGTAGAA+AGG - chr5_4:6225385-6225404 Msa0833030:intron 45.0%
CTAATGCAATCACAGTTGCC+GGG + chr5_4:6225704-6225723 None:intergenic 45.0%
CCTAATGCAATCACAGTTGC+CGG + chr5_4:6225705-6225724 None:intergenic 45.0%
TAATGCAGAGGGCAGTTCAA+TGG - chr5_4:6225883-6225902 Msa0833030:intron 45.0%
CTGCCGTTCCTTTCATTCTA+TGG - chr5_4:6226441-6226460 Msa0833030:intron 45.0%
AACAAACTTGTGGAGGTGGT+AGG + chr5_4:6227402-6227421 None:intergenic 45.0%
CTGAAACAAACTTGTGGAGG+TGG + chr5_4:6227406-6227425 None:intergenic 45.0%
!!! TAAATTTAGAAAATTAATTT+TGG - chr5_4:6224024-6224043 Msa0833030:three_prime_UTR 5.0%
GGCAAATGACTAACGTGTGG+AGG + chr5_4:6224219-6224238 None:intergenic 50.0%
! GGGAAAGCACAAATAGGCCT+CGG + chr5_4:6224481-6224500 None:intergenic 50.0%
AAGACCTTGTTGATCGGAGG+TGG + chr5_4:6224510-6224529 None:intergenic 50.0%
TCAACCTTGCCAGCTGAAGA+GGG + chr5_4:6224639-6224658 None:intergenic 50.0%
AGGGAGTGAAATTGTGGCAG+AGG - chr5_4:6225355-6225374 Msa0833030:intron 50.0%
GGGAGTGAAATTGTGGCAGA+GGG - chr5_4:6225356-6225375 Msa0833030:intron 50.0%
TCTACTACGAAGACTGCACC+GGG + chr5_4:6225384-6225403 None:intergenic 50.0%
CCGGCAACTGTGATTGCATT+AGG - chr5_4:6225702-6225721 Msa0833030:intron 50.0%
GGTCGATAGTAGGATGAGTG+AGG - chr5_4:6226104-6226123 Msa0833030:intron 50.0%
AGCAAGTGTCAAGCCCAAAC+TGG + chr5_4:6226178-6226197 None:intergenic 50.0%
TAGGGGCCATGTCCTAATTG+TGG - chr5_4:6226589-6226608 Msa0833030:CDS 50.0%
!! TGCTCACTCTGGAACACCAT+TGG - chr5_4:6227231-6227250 Msa0833030:five_prime_UTR 50.0%
GTTATCACGTGGGCATAGGG+TGG + chr5_4:6224075-6224094 None:intergenic 55.0%
GACTAACGTGTGGAGGGACT+TGG + chr5_4:6224212-6224231 None:intergenic 55.0%
CACAAATAGGCCTCGGCGAA+GGG + chr5_4:6224474-6224493 None:intergenic 55.0%
! TTGATCGGAGGTGGCCTTAG+GGG + chr5_4:6224501-6224520 None:intergenic 55.0%
! GTTGATCGGAGGTGGCCTTA+GGG + chr5_4:6224502-6224521 None:intergenic 55.0%
TGTTGATCGGAGGTGGCCTT+AGG + chr5_4:6224503-6224522 None:intergenic 55.0%
AAGGCCACCTCCGATCAACA+AGG - chr5_4:6224503-6224522 Msa0833030:intron 55.0%
TGTTTCCTCCCCTCTTCAGC+TGG - chr5_4:6224627-6224646 Msa0833030:CDS 55.0%
CAACCTTGCCAGCTGAAGAG+GGG + chr5_4:6224638-6224657 None:intergenic 55.0%
CTCAACCTTGCCAGCTGAAG+AGG + chr5_4:6224640-6224659 None:intergenic 55.0%
CTCTTCAGCTGGCAAGGTTG+AGG - chr5_4:6224638-6224657 Msa0833030:CDS 55.0%
TGGTGTGTGTGTGTGCGCAA+CGG - chr5_4:6225255-6225274 Msa0833030:intron 55.0%
AAATTGTGGCAGAGGGTCCC+CGG - chr5_4:6225363-6225382 Msa0833030:intron 55.0%
CTACTACGAAGACTGCACCG+GGG + chr5_4:6225383-6225402 None:intergenic 55.0%
CAGTTGCCGGGACTTTCAGT+AGG + chr5_4:6225692-6225711 None:intergenic 55.0%
GCAGAGGGCAGTTCAATGGT+TGG - chr5_4:6225887-6225906 Msa0833030:intron 55.0%
GCACAAATAGGCCTCGGCGA+AGG + chr5_4:6224475-6224494 None:intergenic 60.0%
GGTGTGTGTGTGTGCGCAAC+GGG - chr5_4:6225256-6225275 Msa0833030:intron 60.0%
GGCGCTCCTACTGAAAGTCC+CGG - chr5_4:6225683-6225702 Msa0833030:intron 60.0%
AAGGGATGAGTGGCGGCCAC+CGG + chr5_4:6224456-6224475 None:intergenic 65.0%
CTCGGCGAAGGGATGAGTGG+CGG + chr5_4:6224463-6224482 None:intergenic 65.0%
CCTTGCCAGCTGAAGAGGGG+AGG + chr5_4:6224635-6224654 None:intergenic 65.0%
CCTCCCCTCTTCAGCTGGCA+AGG - chr5_4:6224632-6224651 Msa0833030:CDS 65.0%
CGCCACTCATCCCTTCGCCG+AGG - chr5_4:6224461-6224480 Msa0833030:intron 70.0%
GGCCTCGGCGAAGGGATGAG+TGG + chr5_4:6224466-6224485 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 6223960 6227512 6223960 ID=Msa0833030;Name=Msa0833030
chr5_4 mRNA 6223960 6227512 6223960 ID=Msa0833030-mRNA-1;Parent=Msa0833030;Name=Msa0833030-mRNA-1;_AED=0.16;_eAED=0.16;_QI=399|1|1|1|0.8|0.81|11|424|315
chr5_4 exon 6223960 6224377 6223960 ID=Msa0833030-mRNA-1:exon:2688;Parent=Msa0833030-mRNA-1
chr5_4 exon 6224586 6224661 6224586 ID=Msa0833030-mRNA-1:exon:2687;Parent=Msa0833030-mRNA-1
chr5_4 exon 6224783 6224880 6224783 ID=Msa0833030-mRNA-1:exon:2686;Parent=Msa0833030-mRNA-1
chr5_4 exon 6224958 6225068 6224958 ID=Msa0833030-mRNA-1:exon:2685;Parent=Msa0833030-mRNA-1
chr5_4 exon 6225194 6225245 6225194 ID=Msa0833030-mRNA-1:exon:2684;Parent=Msa0833030-mRNA-1
chr5_4 exon 6225745 6225821 6225745 ID=Msa0833030-mRNA-1:exon:2683;Parent=Msa0833030-mRNA-1
chr5_4 exon 6226066 6226122 6226066 ID=Msa0833030-mRNA-1:exon:2682;Parent=Msa0833030-mRNA-1
chr5_4 exon 6226324 6226424 6226324 ID=Msa0833030-mRNA-1:exon:2681;Parent=Msa0833030-mRNA-1
chr5_4 exon 6226522 6226618 6226522 ID=Msa0833030-mRNA-1:exon:2680;Parent=Msa0833030-mRNA-1
chr5_4 exon 6226708 6226826 6226708 ID=Msa0833030-mRNA-1:exon:2679;Parent=Msa0833030-mRNA-1
chr5_4 exon 6226948 6227512 6226948 ID=Msa0833030-mRNA-1:exon:2678;Parent=Msa0833030-mRNA-1
chr5_4 five_prime_UTR 6227114 6227512 6227114 ID=Msa0833030-mRNA-1:five_prime_utr;Parent=Msa0833030-mRNA-1
chr5_4 CDS 6226948 6227113 6226948 ID=Msa0833030-mRNA-1:cds;Parent=Msa0833030-mRNA-1
chr5_4 CDS 6226708 6226826 6226708 ID=Msa0833030-mRNA-1:cds;Parent=Msa0833030-mRNA-1
chr5_4 CDS 6226522 6226618 6226522 ID=Msa0833030-mRNA-1:cds;Parent=Msa0833030-mRNA-1
chr5_4 CDS 6226324 6226424 6226324 ID=Msa0833030-mRNA-1:cds;Parent=Msa0833030-mRNA-1
chr5_4 CDS 6226066 6226122 6226066 ID=Msa0833030-mRNA-1:cds;Parent=Msa0833030-mRNA-1
chr5_4 CDS 6225745 6225821 6225745 ID=Msa0833030-mRNA-1:cds;Parent=Msa0833030-mRNA-1
chr5_4 CDS 6225194 6225245 6225194 ID=Msa0833030-mRNA-1:cds;Parent=Msa0833030-mRNA-1
chr5_4 CDS 6224958 6225068 6224958 ID=Msa0833030-mRNA-1:cds;Parent=Msa0833030-mRNA-1
chr5_4 CDS 6224783 6224880 6224783 ID=Msa0833030-mRNA-1:cds;Parent=Msa0833030-mRNA-1
chr5_4 CDS 6224592 6224661 6224592 ID=Msa0833030-mRNA-1:cds;Parent=Msa0833030-mRNA-1
chr5_4 three_prime_UTR 6224586 6224591 6224586 ID=Msa0833030-mRNA-1:three_prime_utr;Parent=Msa0833030-mRNA-1
chr5_4 three_prime_UTR 6223960 6224377 6223960 ID=Msa0833030-mRNA-1:three_prime_utr;Parent=Msa0833030-mRNA-1
Gene Sequence

>Msa0833030

ATGGCTAGTAAATTATTAGCATTCACATTGACATGCCCTTCAAGACCAACATTCTCCACTTCTGCTTCTAGAGTCCTTCCAATTCAATTCAATGCCGGTGGCCGCCACTCATCCCTTCGCCGAGGCCTATTTGTGCTTTCCCCTAAGGCCACCTCCGATCAACAAGCTGGCAAGGTTGAGGAAGATGCTGTTGTTGATAGTAAAATCTTACCATATTGCAGCATAGACAAAAAAGAGAAGAAGTCACTTGGTGAACTTGAGCAAGATTTTCTTCAAGCACTTCAAGCATTCTACTATGAGGGAAAGGCAACTATGTCAAATGAGGAATTTGATAATCTCAAAGAAGAACTCATGTGGGAAGGAAGCAGCGTTGTAATGCTAAGTTCTTCTGAGCAAAAATTTCTGGAAGCATCTATTGCTTATGTGTCTGGAAAACCAATCATGAGTGATAAAGAGTTTGATGAATTAAAACTGAAGCTAAAGATGGAAGGGAGTGAAATTGTGGCAGAGGGTCCCCGGTGCAGTCTTCGTAGTAGAAAGGTTTACAGTGATCTAACTGTTGACTATTTAAAGGCGCTCCTACTGAAAGTCCCGGCAACTGTGATTGCATTAGGATTGTTCTTCTTCCTTGATGATGTGACTGGATTTGAGATCAACTATCTGATAGCGATTCCAGAACCATTCAGTTTCATTTTGACTTGGTTTGCTGCCGTTCCTTTCATTCTATGGTTTGCTCAGTCAATTACAAATGCAATTATAAAAGATTTCTTGATTTTGAAGGGGCCATGTCCTAATTGTGGTACTGAAAACACCTCCTTCTTTGGGACTATATTGTCAATTTCAAGTGGAAATTCCACCAACAAAGTCAAATGTGAGAACTGTGGAACTGTGATGCTATATGATTCAACTACAAGATTGATTACATTGCCAGAAGGAAGTACTGCATAA

Protein sequence

>Msa0833030

MASKLLAFTLTCPSRPTFSTSASRVLPIQFNAGGRHSSLRRGLFVLSPKATSDQQAGKVEEDAVVDSKILPYCSIDKKEKKSLGELEQDFLQALQAFYYEGKATMSNEEFDNLKEELMWEGSSVVMLSSSEQKFLEASIAYVSGKPIMSDKEFDELKLKLKMEGSEIVAEGPRCSLRSRKVYSDLTVDYLKALLLKVPATVIALGLFFFLDDVTGFEINYLIAIPEPFSFILTWFAAVPFILWFAQSITNAIIKDFLILKGPCPNCGTENTSFFGTILSISSGNSTNKVKCENCGTVMLYDSTTRLITLPEGSTA*